Citrus Sinensis ID: 025293

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccHHHHHHcccccccccccHHHccccHHHHcHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccHHHHHcccccHHHHHcccccccccHHHHHHHHHHHHccccEEcccccccccccccccEEccccccEEEEcccccccccccHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccccccccccccccEccccccccccEEEEccccccccEEEccccccccEcccccEEEccccHcccccEccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEcccccccHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHccccEEEcccccccccccccccEcccccEEEEEEccEEEcccccHHHHHHHHHccc
Coil and Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsghhgflsFSWIRrnanaqpvfgktrslvqNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRllptsalasnvnvkhivglagppgagkstLAAEVVRRINKiwpqkassfdsqvkppdvatvlpmdgfhLYLSqldamedpkeaharrgapwtfnpLLLLNCLKNLrnqgsvyapsfdhgvgdpveddILVGLQHKVvivdgnylfldggvwkdvssmfdekw
Flexible Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsGHHGFLSFSWIRRNANAQPvfgktrslvqnktslkvlcsqrreipvVEARCMDEVYDALAQRLLPTSALASNVNVKHIVglagppgagKSTLAAEVVRRINKIwpqkassfdsqvkPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Low Complexity Region (SEG)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFnpllllnclknlrnQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered region (IsUnstruct)
*********************************HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK***********DVATVLPMDGFHLYLSQLDA*********RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV********
Disordered Region (DISOPRED)
********************************HHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered Region (DISEMBL)
****************************LPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK********KPPDVATVLPMDGFHLYLSQLDAME********RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Disordered Region (DISPRO)
*DVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q9UTC5	235	Putative uridine kinase C	yes	no	0.525	0.570	0.398	2e-26
C5DNG5	347	ATP-dependent kinase YFH7	yes	no	0.643	0.472	0.269	2e-14
P11664	237	Uncharacterized protein Y	N/A	no	0.603	0.649	0.346	1e-12
A7A245	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
B5VI33	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
B3LUL5	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
P43591	353	ATP-dependent kinase YFH7	yes	no	0.384	0.277	0.291	1e-10
C7GYB3	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
C8Z7U0	353	ATP-dependent kinase YFH7	N/A	no	0.384	0.277	0.291	1e-10
C5DXG0	375	ATP-dependent kinase YFH7	yes	no	0.494	0.336	0.272	1e-10

>sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1

 Score =  119 bits (298), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 14/148 (9%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct: 31  LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             ++P++A A RGA WTF+  L  + ++ ++      +YAPSFDH +GDPV DDI V  +
Sbjct: 79  RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           ++++I +GNYL L+   W D   ++D K
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIK 166

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8

>sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 51/215 (23%)

Query: 75  IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
           IP  E + + +V +        Q   P   +  N   + +VG+ G P +           
Sbjct: 81  IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130

Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-- 187
           R+  + P + S+ D ++     A ++PMDGFHL    LD  +DP EAH RRG+P TF+  
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRGSPPTFDSN 185

Query: 188 ------PLLLLNCL--------KNLRNQG---------------SVYAPSFDHGVGDPVE 218
                  LL   C         K   + G               S+Y P FDH + DP  
Sbjct: 186 NCLQLCKLLAKTCTIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPST 245

Query: 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
               V    ++++++G YL LD   W+D+   F +
Sbjct: 246 GQHCVDAFTRIIVLEGLYLLLDEDNWRDIYPTFKD 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 25/179 (13%)

Query: 78  VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++A+  +E  + + + LL   A    VN +   +V L  PPG GKSTL           W
Sbjct: 12  IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63

Query: 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL 195
              A   D ++  P + T LPMDGFH Y S LDA     +    +GAP TF+   +    
Sbjct: 64  EYLAQQ-DPEL--PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFD---VAKLT 112

Query: 196 KNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
           +NLR   +G    P +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct: 113 ENLRQVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCD 169

Escherichia coli (strain K12) (taxid: 83333)

>sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQKIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain JAY291) (taxid: 574961)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/169 (27%), Positives = 68/169 (40%), Gaps = 43/169 (25%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G  G P A   +         N + P + SSF         A ++PMDGFHL    L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197

Query: 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS------------------------ 203
            + ++P+EAH RRG+P TF+        K L    +                        
Sbjct: 198 SSFQNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTYDPHFP 257

Query: 204 -VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF 251
            +  P FDH + DP  D   +    ++VI++G YL  D   W+ V  + 
Sbjct: 258 CIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEIL 306

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
255559925	312	ATP binding protein, putative [Ricinus c	0.992	0.810	0.714	4e-99
225437219	312	PREDICTED: putative uridine kinase C227.	0.992	0.810	0.679	2e-91
449452236	309	PREDICTED: putative uridine kinase C227.	0.862	0.711	0.693	2e-88
449519647	251	PREDICTED: putative uridine kinase C227.	0.862	0.876	0.693	2e-88
356572241	309	PREDICTED: ATP-dependent kinase YFH7-lik	0.960	0.792	0.593	5e-80
297843102	301	phosphoribulokinase/uridine kinase [Arab	0.945	0.800	0.638	1e-79
224082738	231	predicted protein [Populus trichocarpa]	0.678	0.748	0.809	2e-79
42561642	301	P-loop containing nucleoside triphosphat	0.952	0.807	0.619	5e-79
255633506	233	unknown [Glycine max]	0.890	0.974	0.588	8e-71
326508064	322	predicted protein [Hordeum vulgare subsp	0.811	0.642	0.623	9e-71

>gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis]

 Score =  366 bits (940), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 183/256 (71%), Positives = 208/256 (81%), Gaps = 3/256 (1%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGK-TRSLV 59
           M+VSSLS T RAC  S +TES  LKR   PS H   +S S  +R +  Q +F + T   V
Sbjct: 1   MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58

Query: 60  QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             + S+KVLCS RR++PVVEA  M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59  FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEKW 255
             G WKD+SSMFDEKW
Sbjct: 239 GEGAWKDISSMFDEKW 254

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera]

 Score =  341 bits (875), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 174/256 (67%), Positives = 206/256 (80%), Gaps = 3/256 (1%)

Query: 1   MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLV 59
           M+V+S ST+ +   SSSS+ E   L++ ++P  +   +  S  RR+   QP+FG TRS  
Sbjct: 1   MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58

Query: 60  QNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             ++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59  GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KSTLA+EV  R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY  QLDAMEDP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P  LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEKW 255
             G WK+VSSMFDEKW
Sbjct: 239 QEGDWKEVSSMFDEKW 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 184/222 (82%), Gaps = 2/222 (0%)

Query: 34  HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQR 93
           H FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+D++YD LA+R
Sbjct: 32  HNFLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCIDDIYDDLARR 89

Query: 94  LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153
           LLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS DSQV P DVA 
Sbjct: 90  LLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMDSQVNPADVAA 149

Query: 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 213
           VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGSVYAPSFDHGV
Sbjct: 150 VLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGSVYAPSFDHGV 209

Query: 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           GDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKW
Sbjct: 210 GDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKW 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519647|ref|XP_004166846.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  331 bits (848), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 184/222 (82%), Gaps = 2/222 (0%)

Query: 34  HGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQR 93
           H FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+D++YD LA+R
Sbjct: 32  HNFLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCIDDIYDDLARR 89

Query: 94  LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT 153
           LLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS DSQV P DVA 
Sbjct: 90  LLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMDSQVNPADVAA 149

Query: 154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV 213
           VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGSVYAPSFDHGV
Sbjct: 150 VLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGSVYAPSFDHGV 209

Query: 214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           GDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEKW
Sbjct: 210 GDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEKW 251

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max]

 Score =  303 bits (776), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 155/261 (59%), Positives = 186/261 (71%), Gaps = 16/261 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHHGFLSFSWIRRNANAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYLFLDGGVWKDVSSMFDEKW 255
           NYL L+ GVWK++SS+FDEKW
Sbjct: 231 NYLLLEDGVWKEISSLFDEKW 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata]

 Score =  302 bits (773), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 164/257 (63%), Positives = 192/257 (74%), Gaps = 16/257 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S          EL S   GF    W       Q +     S  +
Sbjct: 1   MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46

Query: 61  NKTSLKVL--CSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
            KT+ + L  CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGA
Sbjct: 47  RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106

Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178
           GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166

Query: 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238
           RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ 
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226

Query: 239 LDGGVWKDVSSMFDEKW 255
           L+ G WKD+S MFDEKW
Sbjct: 227 LEEGSWKDISDMFDEKW 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 140/173 (80%), Positives = 155/173 (89%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           MDE+YDALA RLLPT+  ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1   MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
           D QVKPPDVA VLPMDGFHLY SQLDAME+P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61  DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEKW
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEKW 173

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/255 (61%), Positives = 189/255 (74%), Gaps = 12/255 (4%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S             S   GF    W   + +  P+    R   +
Sbjct: 1   MEVSSFSTVPRYCNSRSFVPEL--------SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48

Query: 61  NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
           N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct: 49  NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
           ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
           GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query: 241 GGVWKDVSSMFDEKW 255
            G WKD+S MFDEKW
Sbjct: 229 EGSWKDISDMFDEKW 243

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633506|gb|ACU17111.1| unknown [Glycine max]

 Score =  272 bits (696), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 143/243 (58%), Positives = 170/243 (69%), Gaps = 16/243 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHHGFLSFSWIRRNANAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYL 237
           NYL
Sbjct: 231 NYL 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508064|dbj|BAJ86775.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  272 bits (696), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 129/207 (62%), Positives = 156/207 (75%)

Query: 49  QPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKH 108
           QP F +  +    K    V C QR+  P +EA+ M+EVYDALA+ LL       N++ K+
Sbjct: 56  QPAFHQPVTRATWKKKHNVTCYQRQGAPQIEAKSMEEVYDALAEHLLSALKSIDNLDSKY 115

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           IVGLAGPPGAGKST+A+EVVRR+NK W QK +   S     D+AT+LPMDGFHLY SQLD
Sbjct: 116 IVGLAGPPGAGKSTVASEVVRRVNKRWSQKHAKDGSPNSDEDIATMLPMDGFHLYRSQLD 175

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
           AMEDPKEAHARRGAPWTFNP L L CL+ L+ +GSVYAPSFDHGVGDPVE+DI V  QHK
Sbjct: 176 AMEDPKEAHARRGAPWTFNPSLFLKCLQILKEEGSVYAPSFDHGVGDPVENDIFVKPQHK 235

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           +VIV+GNYL L+  VW+++ +MFDEKW
Sbjct: 236 IVIVEGNYLLLEEDVWREIRNMFDEKW 262

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2007544	301	AT1G03030 [Arabidopsis thalian	0.952	0.807	0.592	1.5e-74
POMBASE|SPAC227.14	235	SPAC227.14 "uridine kinase (pr	0.525	0.570	0.391	2.6e-24
UNIPROTKB|G4MQ63	236	MGG_02303 "Phosphoribulokinase	0.627	0.677	0.392	6.8e-24
CGD|CAL0002107	226	orf19.7061 [Candida albicans (	0.545	0.615	0.367	1.6e-22
ASPGD|ASPL0000074767	234	AN4382 [Emericella nidulans (t	0.560	0.611	0.352	4.9e-21
ASPGD|ASPL0000094429	583	AN11942 [Emericella nidulans (	0.396	0.173	0.358	6.8e-14
SGD|S000001903	353	YFH7 "Putative kinase with sim	0.537	0.388	0.288	1.2e-09
UNIPROTKB|P11664	237	yggC "conserved protein with n	0.376	0.405	0.375	3.4e-07

TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)]

 Score = 752 (269.8 bits), Expect = 1.5e-74, P = 1.5e-74
 Identities = 151/255 (59%), Positives = 180/255 (70%)

Query:     1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPVFGKTRSLVQ 60
             M+VSS ST PR C S S     P    EL S   GF    W   + +  P+    R   +
Sbjct:     1 MEVSSFSTVPRYCNSRSFV---P----EL-SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48

Query:    61 NKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
             N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct:    49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query:   121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
             ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct:   109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query:   181 GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
             GAPWTF              +GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct:   169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query:   241 GGVWKDVSSMFDEKW 255
              G WKD+S MFDEKW
Sbjct:   229 EGSWKDISDMFDEKW 243

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 58/148 (39%), Positives = 84/148 (56%)

Query:   109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
             ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct:    31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query:   169 AMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQ 226
               ++P++A A RGA WTF                   +YAPSFDH +GDPV DDI V  +
Sbjct:    79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query:   227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
             ++++I +GNYL L+   W D   ++D K
Sbjct:   139 NRILIFEGNYLLLNKPPWSDACKLYDIK 166

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 69/176 (39%), Positives = 95/176 (53%)

Query:    90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149
             LA+++     LA     + ++G+AG PGAGK+TLA  VV  +  I   +  + D +    
Sbjct:     9 LAKKVWARYKLAEPTK-RILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGEF--- 64

Query:   150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQ 201
                T +PMDG+HL  +QL AM DP+ A  RRGA +TF                      Q
Sbjct:    65 --VTDIPMDGYHLTRAQLAAMPDPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQ 122

Query:   202 GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
             G+V  YAPSFDH V DPV D I +  + ++VI++GNYL LD   WK  +S+ DE W
Sbjct:   123 GTVTIYAPSFDHAVKDPVADSIPISPKMRIVIIEGNYLALDREPWKSAASLLDEIW 178

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 57/155 (36%), Positives = 86/155 (55%)

Query:   102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161
             S+   ++++ LAG PG+GK+T A  + +R+        S+F   V       VL  DGFH
Sbjct:    29 SDSQPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFH 73

Query:   162 LYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDD 220
             LY S+L  M DPKEA  RRGAP+TF              +  ++ APSFDH + DP+EDD
Sbjct:    74 LYRSELTLMADPKEAFRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDD 133

Query:   221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
             I++     ++I++GNY+ L    W ++ +  D+ W
Sbjct:   134 IVIHGNVDIIIIEGNYVSLRDKYWDEIENFVDDTW 168

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 55/156 (35%), Positives = 85/156 (54%)

Query:   105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
             N + ++ ++G PG+GK+ LA  + RRIN    +K  + +  +    +A  +PMDG+HL  
Sbjct:    22 NARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTR 73

Query:   165 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVED 219
             +QL  M DP+ A ARRGA +TF                     +++APSFDH V DPV++
Sbjct:    74 AQLAQMPDPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDN 133

Query:   220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
             DI +    +V+  +GNYL L+   W   + + DE W
Sbjct:   134 DIPIAAARRVIFFEGNYLSLNKEPWSSAAKLMDELW 169

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 42/117 (35%), Positives = 60/117 (51%)

Query:   152 ATVLPMDGFHLYLSQLDAMEDPK--EAHARRGAPWTFX--------------XXXXXXXX 195
             A VL MDGFHL  S+LD + + +  EA+ RRGAPWTF                       
Sbjct:    74 ALVLSMDGFHLPRSELDTLPNKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSS 133

Query:   196 XXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
                   G +YAP+F H   DP+ + I++     +VI++GNYL LD   W+D++ + D
Sbjct:   134 SSEETAGVLYAPTFSHSTKDPIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVD 190

GO:0006059 "hexitol metabolic process" evidence=RCA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=RCA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 117 (46.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
 Identities = 45/156 (28%), Positives = 72/156 (46%)

Query:    33 HHGFLSFSWIRRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCM--DEVYDAL 90
             +H FLS      + N   V  + + +V    SLK L    +   ++E + +  D V D  
Sbjct:    52 YHTFLS-----EHPNVIEVNDRLKPMVNLVDSLKTL-QPNKVAEMIENQGLFKDHVEDVN 105

Query:    91 AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPD 150
              Q +  ++  ++N     +V   G   A +       V  +NK+      + DS     +
Sbjct:   106 FQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVN-VNKL------AQDSI----N 154

Query:   151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF 186
             +A ++PMDGFHL    LD  +DP+ AH RRG+P TF
Sbjct:   155 IAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTF 190

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016310 "phosphorylation" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)]

 Score = 135 (52.6 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 39/104 (37%), Positives = 51/104 (49%)

Query:   149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPS 208
             P + T LPMDGFH Y S LDA     +    +GAP TF              +G    P 
Sbjct:    74 PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQ 127

Query:   209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
             +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct:   128 YDRQKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCD 169

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	3e-39
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	3e-33
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	2e-11
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	3e-08
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	4e-08
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	5e-06
TIGR00235	207	TIGR00235, udk, uridine kinase	2e-05
COG4240	300	COG4240, COG4240, Predicted kinase [General functi	2e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	1e-04
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	2e-04
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	2e-04
cd02025	220	cd02025, PanK, Pantothenate kinase (PanK) catalyze	7e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	7e-04
cd02026	273	cd02026, PRK, Phosphoribulokinase (PRK) is an enzy	0.001
cd02024	187	cd02024, NRK1, Nicotinamide riboside kinase (NRK)	0.001
COG1855	604	COG1855, COG1855, ATPase (PilT family) [General fu	0.002
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.003
PLN02348	395	PLN02348, PLN02348, phosphoribulokinase	0.003
pfam03308	267	pfam03308, ArgK, ArgK protein	0.004

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score =  135 bits (343), Expect = 3e-39
 Identities = 68/180 (37%), Positives = 94/180 (52%), Gaps = 19/180 (10%)

Query: 78  VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
           V+A+  DE  +A+ + LL   +AL +    + IVG+AGPPGAGKSTLA  +   + +   
Sbjct: 3   VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--- 59

Query: 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK 196
                          A  +PMDGFHL  + LDA         R+GAP TF+   L   L+
Sbjct: 60  ----------DGELPAIQVPMDGFHLDNAVLDAHG----LRPRKGAPETFDVAGLAALLR 105

Query: 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            LR     VY P FD  + DPV D I+V    ++VIV+GNYL LD   W+ ++ +FD   
Sbjct: 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTI 165

Length = 229

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score =  121 bits (306), Expect = 3e-33
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158
           L +N      I+G+AG    GKST A  +++ +   WP+           P V  V  MD
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPES----------PKVDLV-TMD 121

Query: 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV 217
           GFH   + LD         AR+G P +++   LL  L +++     V+AP + H + DPV
Sbjct: 122 GFHYPNAVLDERG----LMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPV 177

Query: 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
            D   V  Q  ++IV+GN +  DG  W  +S  FD
Sbjct: 178 PDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFD 212

Length = 283

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 61.1 bits (149), Expect = 2e-11
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 24/146 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E+  ++                      V+ +D ++   S L 
Sbjct: 10  IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHLP 53

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E           P  F+  LL+  LK+L+    V  P +D+       + I V     
Sbjct: 54  FEE---RNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND- 109

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VVIV+G  L  D    + +  + D K
Sbjct: 110 VVIVEGILLLYD----ERLRDLMDLK 131

Length = 218

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 51.8 bits (125), Expect = 3e-08
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 36/152 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E++ ++                      ++  D ++  LS   
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41

Query: 169 AMEDPKEA------HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222
             E+ +E       H      + F+  LL++ L++L+N  SV  P +D      +++ + 
Sbjct: 42  -HEELEERKNNNYDHP---DAFDFD--LLISHLQDLKNGKSVEIPVYDFKTHSRLKETVT 95

Query: 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           V     V+I++G     D    K++  + D K
Sbjct: 96  VY-PADVIILEGILALYD----KELRDLMDLK 122

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 27/153 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  GAGK+T    V R    I       F  +  P         D FH Y     
Sbjct: 1   IIGVTGSSGAGKTT----VARTFVSI-------FGREGVPAAGIE---GDSFHRYDRFYM 46

Query: 169 --AMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDI 221
               ED K A        +P   +  LL    K L+  GS   P  +   G  DP   ++
Sbjct: 47  DLHPEDRKRAGNNHYSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPEL 106

Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           + G    ++  +G    L G   + V+ + D K
Sbjct: 107 IEG--ADILFYEG----LHGLYDERVAQLLDLK 133

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           +VG+AGP G+GK+T A +     R+N I P    S D    P         DG + + S 
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYYVPRKTPRDE--DGNYDFESI 57

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
           LD                    LL  N L +L N   V  P +D   G       L    
Sbjct: 58  LDL------------------DLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPP 98

Query: 227 HKVVIVDGNY 236
             VVI++G Y
Sbjct: 99  SGVVILEGIY 108

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 26/135 (19%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  G+GK+T+A ++  ++ K+                   ++  D ++   S L 
Sbjct: 8   IIGIGGGSGSGKTTVARKIYEQLGKLE----------------IVIISQDNYYKDQSHL- 50

Query: 169 AMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225
            M + K+    H     P  F+  LL   LKNL+N   +  P +D+      ++ + +  
Sbjct: 51  EMAERKKTNFDH-----PDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE- 104

Query: 226 QHKVVIVDGNYLFLD 240
              VVI++G     D
Sbjct: 105 PKDVVILEGIMPLFD 119

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only]

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           IVG++GP G+GKSTL+A +VR +     ++ ++               +D    YL+  D
Sbjct: 52  IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-------------LDDL--YLTHAD 96

Query: 169 AMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDD 220
            +   ++ +     RG P T +P L LN L  +   G  V  P FD     G GD     
Sbjct: 97  RLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQT 156

Query: 221 ILVGLQHKVVIVDG 234
             +  +  +VI++G
Sbjct: 157 QWIKFEVDIVILEG 170

Length = 300

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ + GPPG+GKSTLA ++  ++ 
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLG 24

Length = 114

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 30/150 (20%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G+AG  G+GK+T+A+ +   +                   +A V+P D ++   S L
Sbjct: 7   IIIGIAGGSGSGKTTVASTIYEEL---------------GDESIA-VIPQDSYYKDQSHL 50

Query: 168 DAMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224
              E+  +    H     P  F+  LL+  LK L+   ++  P +D+      ++ I V 
Sbjct: 51  S-FEERVKTNYDH-----PDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE 104

Query: 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
               V+I++G  L  D    + +  + D K
Sbjct: 105 -PKDVIILEGILLLED----ERLRDLMDIK 129

Length = 209

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
           R I +VE+R  D    ALA+ LL   AL       H++G+ G PGAGKSTL   + R 
Sbjct: 21  RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74

Length = 323

>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 26/150 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----L 164
           I+G+AG    GKST  A V++ +   WP   +         ++ T    DGF LY    L
Sbjct: 1   IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNV--------ELITT---DGF-LYPNKEL 47

Query: 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 223
            +   M+       R+G P +++   LL  LK++++    V  P + H   D +  +   
Sbjct: 48  IERGLMD-------RKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQT 100

Query: 224 GLQHKVVIVDG-NYLFLDGGVWKDVSSMFD 252
             Q  ++I++G N L         VS  FD
Sbjct: 101 VDQPDILIIEGLNVLQTGQNPRLFVSDFFD 130

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.5 bits (89), Expect = 7e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
             ++ + GPPG+GK+TLA  + R +  
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGP 28

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 41/154 (26%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----- 163
           I+G+AG  G GKST     +RR+  ++              D+ TV+ +D +H       
Sbjct: 1   IIGVAGDSGCGKSTF----LRRLTSLF------------GSDLVTVICLDDYHSLDRKGR 44

Query: 164 -LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDD 220
             + + A+ DP+  +        F+  L+   LK L+   ++  P ++H  G  DP E  
Sbjct: 45  KETGITAL-DPRANN--------FD--LMYEQLKALKEGQAIEKPIYNHVTGLIDPPE-- 91

Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWK--DVSSMFD 252
            L+     +V+++G +   D  V +  D S   D
Sbjct: 92  -LIKPTK-IVVIEGLHPLYDERVRELLDFSVYLD 123

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273

>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 54/167 (32%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF----------DSQV-------KPPDV 151
           IVG++G   +GK+TLA    + + +I P   +            + ++       K  DV
Sbjct: 1   IVGISGVTNSGKTTLA----KLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDV 53

Query: 152 ATVLPMDGFHLYLSQLDA-MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD 210
              L M+     +S LD   E                        K LR+ G+   P  +
Sbjct: 54  LEALDMEAM---MSTLDYWRETGHFP-------------------KFLRSHGNENDPEKE 91

Query: 211 HGVGDPV---EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
                 +   + D+L      ++IVDG  L+      K +  +FD +
Sbjct: 92  FIEDAQIEETKADLLGAEDLHILIVDGFLLYNY----KPLVDLFDIR 134

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187

>gnl|CDD|224768 COG1855, COG1855, ATPase (PilT family) [General function prediction only]

 Score = 38.9 bits (91), Expect = 0.002
 Identities = 34/98 (34%), Positives = 43/98 (43%), Gaps = 18/98 (18%)

Query: 70  SQRREI----PVVEARCMD-EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLA 124
           S R EI    PVV+    D  + D L +RL      A  + +      AG PGAGKST A
Sbjct: 230 SDRWEITAVRPVVKLSLEDYGLSDKLKERLEER---AEGILI------AGAPGAGKSTFA 280

Query: 125 ---AEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG 159
              AE      KI     S  D QV  P++    P++G
Sbjct: 281 QALAEFYASQGKIVKTMESPRDLQV-SPEITQYSPLEG 317

Length = 604

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 89  ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
           A++ RL P SA    V    I+ L GP GAGKSTL A
Sbjct: 7   AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40

Length = 248

>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 28/153 (18%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLY 163
           ++GLA   G GKST     +RR+  ++     P K  + DS     D  TV+ +D +H  
Sbjct: 51  VIGLAADSGCGKSTF----MRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS- 105

Query: 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GVGDPVEDDI 221
              LD     KE       P   N  L+   +K L+   +V  P ++H  G+ DP E   
Sbjct: 106 ---LD-RTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--- 158

Query: 222 LVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD 252
              L    K+++++G +   D    + V  + D
Sbjct: 159 ---LIEPPKILVIEGLHPMYD----ERVRDLLD 184

Length = 395

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL 123
           R I +VE+R         A+ LL    L       H VG+ G PGAGKSTL
Sbjct: 3   RAITLVESR------RPEARELL--RRLMPLTGRAHRVGITGVPGAGKSTL 45

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	99.98
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	99.98
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	99.98
PRK10908	222	cell division protein FtsE; Provisional	99.98
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	99.98
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	99.98
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	99.98
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	99.98
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	99.98
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	99.98
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	99.98
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	99.98
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	99.98
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	99.98
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	99.98
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	99.98
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	99.98
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	99.98
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	99.98
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	99.98
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	99.98
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	99.98
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
COG0410	237	LivF ABC-type branched-chain amino acid transport	99.97
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	99.97
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	99.97
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	99.97
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	99.97
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	99.97
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.97
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	99.97
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	99.97
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	99.97
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.97
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	99.97
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	99.97
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.97
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.97
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.97
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	99.97
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.97
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.97
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.97
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.97
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.97
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.97
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.97
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.97
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.97
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.97
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.97
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.97
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.97
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.97
COG4181	228	Predicted ABC-type transport system involved in ly	99.97
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.97
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.97
COG1123	539	ATPase components of various ABC-type transport sy	99.97
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.97
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.97
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.97
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.97
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.97
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.97
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.97
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.97
COG0488	530	Uup ATPase components of ABC transporters with dup	99.97
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.97
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.97
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.97
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.97
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.97
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.97
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.97
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.97
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.97
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.97
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.97
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.97
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.97
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.97
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.97
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.97
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.97
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.97
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.97
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.97
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.97
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.97
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.97
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.97
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.97
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.97
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.97
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.97
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03246	173	ABCC_Protease_Secretion This family represents the	99.97
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.97
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.97
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.97
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.97
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.97
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.96
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.96
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.96
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.96
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.96
COG1123	539	ATPase components of various ABC-type transport sy	99.96
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.96
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.96
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.96
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.96
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.96
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.96
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.96
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.96
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.96
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.96
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.96
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.96
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.96
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.96
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.96
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.96
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.96
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.96
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.96
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.96
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.96
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.96
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.96
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.96
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.96
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.96
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.95
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.95
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.95
PRK13409	590	putative ATPase RIL; Provisional	99.95
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.95
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.95
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.95
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.95
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.95
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.95
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.95
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.95
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.95
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.95
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.95
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.95
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.95
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.95
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.95
COG4559	259	ABC-type hemin transport system, ATPase component	99.95
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.95
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.95
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.95
COG0488	530	Uup ATPase components of ABC transporters with dup	99.95
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.95
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.95
PLN03073	718	ABC transporter F family; Provisional	99.94
PLN03211	659	ABC transporter G-25; Provisional	99.94
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.94
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.94
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.94
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.94
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.94
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.94
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.94
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.94
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.94
COG4172	534	ABC-type uncharacterized transport system, duplica	99.94
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.94
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.94
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.94
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.94
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.94
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.94
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.94
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.94
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.94
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.94
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.94
COG4172	534	ABC-type uncharacterized transport system, duplica	99.93
COG4988	559	CydD ABC-type transport system involved in cytochr	99.93
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.93
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.93
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.93
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.93
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.93
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.93
PLN03073	718	ABC transporter F family; Provisional	99.93
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.93
PRK13409	590	putative ATPase RIL; Provisional	99.93
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.93
PLN03232	1495	ABC transporter C family member; Provisional	99.92
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.92
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.92
PLN03130	1622	ABC transporter C family member; Provisional	99.92
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.92
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.92
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.92
PTZ00243	1560	ABC transporter; Provisional	99.92
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.92
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.92
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.91
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.91
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.91
PLN03140	1470	ABC transporter G family member; Provisional	99.91
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.9
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.9
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.9
PLN03232	1495	ABC transporter C family member; Provisional	99.9
PLN03130	1622	ABC transporter C family member; Provisional	99.89
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.89
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.89
PLN03140	1470	ABC transporter G family member; Provisional	99.89
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.89
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.88
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.86
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.86
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.86
PTZ00243	1560	ABC transporter; Provisional	99.85
COG4178	604	ABC-type uncharacterized transport system, permeas	99.85
KOG0062	582	consensus ATPase component of ABC transporters wit	99.84
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.84
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.84
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.83
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.82
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.82
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.81
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.81
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.8
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.8
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.78
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.77
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.77
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.77
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.77
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.76
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.75
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.74
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.74
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.69
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.69
KOG0062	582	consensus ATPase component of ABC transporters wit	99.69
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.67
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.66
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.62
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.61
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.61
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.6
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.57
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.57
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.54
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.54
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.52
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.52
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.49
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.46
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.46
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.45
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.44
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.43
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.4
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.36
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.35
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.29
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.28
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.27
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.24
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.24
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.22
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.22
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.19
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.19
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.17
PLN02796	347	D-glycerate 3-kinase	99.17
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.17
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	99.14
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	99.12
PRK05439	311	pantothenate kinase; Provisional	99.1
PRK05480	209	uridine/cytidine kinase; Provisional	99.08
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.06
PTZ00301	210	uridine kinase; Provisional	99.05
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	98.98
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.97
PRK08533	230	flagellar accessory protein FlaH; Reviewed	98.96
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.96
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.92
PLN03046	460	D-glycerate 3-kinase; Provisional	98.91
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.91
PLN02318	656	phosphoribulokinase/uridine kinase	98.9
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	98.89
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.89
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.87
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	98.82
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.82
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.81
cd01128	249	rho_factor Transcription termination factor rho is	98.78
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.76
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.75
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.74
COG3910	233	Predicted ATPase [General function prediction only	98.69
PLN02348	395	phosphoribulokinase	98.67
PRK13695	174	putative NTPase; Provisional	98.67
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	98.66
PRK07429	327	phosphoribulokinase; Provisional	98.64
COG4240	300	Predicted kinase [General function prediction only	98.59
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.56
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.52
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.5
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.47
TIGR00767	415	rho transcription termination factor Rho. Members	98.45
smart00382	148	AAA ATPases associated with a variety of cellular	98.45
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.44
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.41
PRK06067	234	flagellar accessory protein FlaH; Validated	98.4
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.35
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.34
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.32
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.31
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.31
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.31
PRK09825	176	idnK D-gluconate kinase; Provisional	98.3
PRK09862	506	putative ATP-dependent protease; Provisional	98.29
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.29
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.27
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.26
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.25
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.24
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.24
PHA02562	562	46 endonuclease subunit; Provisional	98.17
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.17
PRK00300	205	gmk guanylate kinase; Provisional	98.15
TIGR02546	422	III_secr_ATP type III secretion apparatus H+-trans	98.14
PRK15453	290	phosphoribulokinase; Provisional	98.13
PRK07667	193	uridine kinase; Provisional	98.12
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.12
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.12
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.12
PRK08149	428	ATP synthase SpaL; Validated	98.11
TIGR01026	440	fliI_yscN ATPase FliI/YscN family. This family of	98.11
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.11
PRK09099	441	type III secretion system ATPase; Provisional	98.1
PRK10416	318	signal recognition particle-docking protein FtsY;	98.07
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.06
PRK05688	451	fliI flagellum-specific ATP synthase; Validated	98.06
TIGR03498	418	FliI_clade3 flagellar protein export ATPase FliI.	98.06
PRK08972	444	fliI flagellum-specific ATP synthase; Validated	98.06
PRK10869	553	recombination and repair protein; Provisional	98.06
PRK05922	434	type III secretion system ATPase; Validated	98.05
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.05
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	98.04

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=1.6e-40  Score=271.56  Aligned_cols=169  Identities=20%  Similarity=0.254  Sum_probs=139.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------  147 (255)
                      ++|+++||+|+||+..    +|++||++|.+||+++|+||||||||||||||+++.+   |++|+ .+++. +.      
T Consensus         1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~   73 (240)
T COG1126           1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL   73 (240)
T ss_pred             CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence            3799999999999854    6699999999999999999999999999999999998   99999 56553 21      


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                        +..+|.+ + ..|.++. .+++.+|...... ..+.+........+++|+.+++.  .+.|+.+|||||||||+||||
T Consensus        74 ~~R~~vGmV-F-Q~fnLFP-HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA  150 (240)
T COG1126          74 KLRRKVGMV-F-QQFNLFP-HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA  150 (240)
T ss_pred             HHHHhcCee-c-ccccccc-cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence              2346663 3 3333332 3788888776554 34556666667788999999987  568999999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|+++|+||||+.|||+...++.+++.+.
T Consensus       151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~~L  182 (240)
T COG1126         151 LAMDPKVMLFDEPTSALDPELVGEVLDVMKDL  182 (240)
T ss_pred             HcCCCCEEeecCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988753

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.5e-40  Score=276.15  Aligned_cols=170  Identities=16%  Similarity=0.225  Sum_probs=143.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCe
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV  151 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~  151 (255)
                      .+++++++++.|++.  .  +|+|+||+|.+||+++|+||||||||||||+|+|+.+   |++|+ .+++...   .++.
T Consensus         2 ~~l~i~~v~~~f~~~--~--vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~   74 (248)
T COG1116           2 ALLEIEGVSKSFGGV--E--VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI   74 (248)
T ss_pred             ceEEEEeeEEEeCce--E--EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence            478999999999983  3  6699999999999999999999999999999999999   99999 4554322   4567


Q ss_pred             EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      |+ +++.+..++.  +++.+|+.+.....+...........++++.+++.  .++++.+|||||||||+|||||+.+|++
T Consensus        75 ~~-vFQ~~~LlPW--~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l  151 (248)
T COG1116          75 GY-VFQEDALLPW--LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL  151 (248)
T ss_pred             EE-EeccCcccch--hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence            77 5555544433  68888888877776655555556788999999985  6899999999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHhhC
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDEKW  255 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~~~  255 (255)
                      |+|||||..||+..+..+.+.+.++|
T Consensus       152 LLlDEPFgALDalTR~~lq~~l~~lw  177 (248)
T COG1116         152 LLLDEPFGALDALTREELQDELLRLW  177 (248)
T ss_pred             EEEcCCcchhhHHHHHHHHHHHHHHH
Confidence            99999999999999999999987765

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.4e-38  Score=264.25  Aligned_cols=168  Identities=16%  Similarity=0.164  Sum_probs=145.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++||+|.|++.  .  +++|+||+|++||+++++|||||||||+||||+++++   |++|+ .+++...        
T Consensus         1 MI~~~nvsk~y~~~--~--av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L   73 (309)
T COG1125           1 MIEFENVSKRYGNK--K--AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL   73 (309)
T ss_pred             CceeeeeehhcCCc--e--eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence            68999999999973  3  5599999999999999999999999999999999999   99999 5554322        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhh
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l  223 (255)
                      +..+|++++..+...+   +++.+|+.......+........+..++++.+++.    .++|+++|||||+|||.+||||
T Consensus        74 Rr~IGYviQqigLFPh---~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL  150 (309)
T COG1125          74 RRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL  150 (309)
T ss_pred             HHhhhhhhhhcccCCC---ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence            3468887777665443   78999998888887776666667788999999986    4689999999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||..|||.++.++.+.+.++
T Consensus       151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~l  181 (309)
T COG1125         151 AADPPILLMDEPFGALDPITRKQLQEEIKEL  181 (309)
T ss_pred             hcCCCeEeecCCccccChhhHHHHHHHHHHH
Confidence            9999999999999999999999999888653

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-37  Score=261.21  Aligned_cols=171  Identities=16%  Similarity=0.219  Sum_probs=131.1

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-c-CCCCCC----C
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVK----P  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~-~~~~~~----~  148 (255)
                      +++|+++||++.|++.  +  +|+||||+|++|++++|+||||||||||+|+|+|+++   |.+|+ . ++....    .
T Consensus         2 ~~~i~v~nl~v~y~~~--~--vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~   74 (254)
T COG1121           2 MPMIEVENLTVSYGNR--P--VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR   74 (254)
T ss_pred             CcEEEEeeeEEEECCE--e--eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence            5689999999999963  3  5699999999999999999999999999999999998   99999 3 333221    1


Q ss_pred             CCeEEEEecCC-CCCCCccCCcccChHHHHH-hcCC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          149 PDVATVLPMDG-FHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 ~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~-~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                      ..+|+ +++.- ++... .+++.+.+...+. ..+.   +...+...+.++|+.+++.  .++.+..|||||+|||.|||
T Consensus        75 ~~IgY-VPQ~~~~d~~f-P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR  152 (254)
T COG1121          75 LRIGY-VPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR  152 (254)
T ss_pred             CeEEE-cCcccccCCCC-CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence            34676 44422 22111 1344443322110 1111   1223356778999999987  57889999999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+.+|++|+|||||+++|+.++..+.++|++.
T Consensus       153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l  185 (254)
T COG1121         153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL  185 (254)
T ss_pred             HhccCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3.2e-37  Score=264.08  Aligned_cols=172  Identities=16%  Similarity=0.169  Sum_probs=144.8

Q ss_pred             eEEecCchheehh-hhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~-~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ||++++|+|.|.. ....+.+++||||+|++||++||+|.||||||||+|+|+++.+   |++|+ .+++...       
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~   77 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE   77 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence            6899999999986 2234568899999999999999999999999999999999998   99999 4555221       


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                          +..+|. |++ .|.+.. ..|+.+|+.+..+..+.+......++.++++.+++.  .+.|+.+|||||||||+|||
T Consensus        78 Lr~~R~~IGM-IFQ-hFnLLs-srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR  154 (339)
T COG1135          78 LRQLRQKIGM-IFQ-HFNLLS-SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR  154 (339)
T ss_pred             HHHHHhhccE-Eec-cccccc-cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence                345776 333 333322 258889999999888887777777889999999987  46889999999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+.+|+|||.||+|+.|||...+.+.+++.++
T Consensus       155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~I  187 (339)
T COG1135         155 ALANNPKILLCDEATSALDPETTQSILELLKDI  187 (339)
T ss_pred             HHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.8e-37  Score=255.63  Aligned_cols=172  Identities=16%  Similarity=0.141  Sum_probs=138.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-------  147 (255)
                      +++++||+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+   |++|. .+++. ..       
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~   77 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL   77 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence            46799999999764334557899999999999999999999999999999999998   99999 55542 11       


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--C-ccCCCCCcccccchhhh
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-VYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~-~~~~~lS~G~kqrv~la  220 (255)
                          ...+|. +++++..++.  +++.+++.......+............+++.+++..  . .++.+|||||||||+||
T Consensus        78 ~~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA  154 (226)
T COG1136          78 AKLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA  154 (226)
T ss_pred             HHHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence                235777 5555444433  788888887665555543333455677888888862  3 66889999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+.+|++++.||||..||..+.+.++++|.+.
T Consensus       155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~  188 (226)
T COG1136         155 RALINNPKIILADEPTGNLDSKTAKEVLELLREL  188 (226)
T ss_pred             HHHhcCCCeEEeeCccccCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999764

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=4.2e-37  Score=270.88  Aligned_cols=169  Identities=17%  Similarity=0.125  Sum_probs=145.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.||+..    +++++||+|+.||+++|+||||||||||||+|+|+..   |++|+ .+++...      
T Consensus         1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~   73 (338)
T COG3839           1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE   73 (338)
T ss_pred             CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            56899999999999832    5699999999999999999999999999999999998   99999 5665322      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...++. +++++-.++  .+++.+|+.+..+..+.+......++.++.+.+++.  .++++.+|||||+|||++||||+.
T Consensus        74 ~R~iam-VFQ~yALyP--hmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr  150 (338)
T COG3839          74 KRGIAM-VFQNYALYP--HMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVR  150 (338)
T ss_pred             HCCEEE-EeCCccccC--CCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhc
Confidence            234565 555443333  389999999999998887777778889999999887  578899999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+++|+|||++.||...+..++..|.+
T Consensus       151 ~P~v~L~DEPlSnLDa~lR~~mr~ei~~  178 (338)
T COG3839         151 KPKVFLLDEPLSNLDAKLRVLMRSEIKK  178 (338)
T ss_pred             CCCEEEecCchhHhhHHHHHHHHHHHHH
Confidence            9999999999999999999999888765

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=7e-37  Score=254.53  Aligned_cols=175  Identities=16%  Similarity=0.153  Sum_probs=135.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----  149 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~----  149 (255)
                      +++|+++||++.|+.......++++|||+|.+||++||+|+||||||||.|+|+|+.+   |+.|+ .++++...+    
T Consensus         1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~   77 (252)
T COG1124           1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA   77 (252)
T ss_pred             CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence            4689999999999874322235699999999999999999999999999999999998   99999 666643222    


Q ss_pred             ----CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhh
Q 025293          150 ----DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       150 ----~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~  222 (255)
                          ..-.+|++|.+.-.++..++.+.+.......++..  ...+..++++.++++   .++++.+|||||+||++||||
T Consensus        78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~--~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA  155 (252)
T COG1124          78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSK--SQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA  155 (252)
T ss_pred             hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccH--HHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence                11233666665443333444433333333333321  233478899999987   578899999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||+.||...+.++++++.+.
T Consensus       156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~l  187 (252)
T COG1124         156 LIPEPKLLILDEPTSALDVSVQAQILNLLLEL  187 (252)
T ss_pred             hccCCCEEEecCchhhhcHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999764

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.7e-36  Score=243.14  Aligned_cols=169  Identities=17%  Similarity=0.127  Sum_probs=145.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-C--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-V--------  146 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~--------  146 (255)
                      ||+++||+|.|++. +.  +|+||||+|++||++-|+||||||||||||+|.+..+   |+.|+ .+++. +        
T Consensus         1 mI~f~~V~k~Y~~g-~~--aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i   74 (223)
T COG2884           1 MIRFENVSKAYPGG-RE--ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI   74 (223)
T ss_pred             CeeehhhhhhcCCC-ch--hhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence            68999999999875 33  6699999999999999999999999999999999998   99999 44442 1        


Q ss_pred             --CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293          147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       147 --~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~  222 (255)
                        .+..+|. +++|+..+..  .++.+|+.+..+..|.+.......+.++++.+++..  +..+.+|||||+|||+||||
T Consensus        75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA  151 (223)
T COG2884          75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA  151 (223)
T ss_pred             chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence              1345776 6777665554  688999999999999877667778899999999874  45678999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|++||.||||-.|||+...+++++|.+.
T Consensus       152 iV~~P~vLlADEPTGNLDp~~s~~im~lfeei  183 (223)
T COG2884         152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEEI  183 (223)
T ss_pred             HccCCCeEeecCCCCCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999999999764

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=1.6e-36  Score=266.16  Aligned_cols=170  Identities=18%  Similarity=0.187  Sum_probs=141.5

Q ss_pred             CCeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC-CCC----
Q 025293           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS-QVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~-~~~----  147 (255)
                      +.+++++||+|.|+ +..    +|+||||+|++|+++||+||||||||||+|+|+|++.   |++|+ .+++ +..    
T Consensus         2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~   74 (293)
T COG1131           2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA   74 (293)
T ss_pred             CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence            35789999999999 533    6699999999999999999999999999999999998   99999 3443 322    


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l  223 (255)
                        ...+|++...+.++   +.+++.+++.+....++.+.......+..+++.+++..  ++++..||+|||||+.+|.+|
T Consensus        75 ~~~~~igy~~~~~~~~---~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL  151 (293)
T COG1131          75 KVRRRIGYVPQEPSLY---PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL  151 (293)
T ss_pred             HHHhheEEEccCCCCC---ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence              23467743333322   33899999999888887654444567889999999986  677899999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|+++||||||+|||+..+..++++|.+.
T Consensus       152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l  182 (293)
T COG1131         152 LHDPELLILDEPTSGLDPESRREIWELLREL  182 (293)
T ss_pred             hcCCCEEEECCCCcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999764

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=9.6e-37  Score=269.93  Aligned_cols=170  Identities=15%  Similarity=0.150  Sum_probs=140.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------C
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------K  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------~  147 (255)
                      ++.++++||+|.|++..    +++|+||+|++||+++|+||||||||||||+|+|+..   |++|+ .+++..      .
T Consensus         3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~   75 (352)
T COG3842           3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE   75 (352)
T ss_pred             CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            46899999999999633    6699999999999999999999999999999999998   99999 555532      2


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      +..+|. +++++-.++.  +++.+|+.+..+.... ........+.++++.+++.  .++++.+|||||+|||++||||+
T Consensus        76 kR~ig~-VFQ~YALFPH--ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~  152 (352)
T COG3842          76 KRPIGM-VFQSYALFPH--MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV  152 (352)
T ss_pred             hcccce-eecCcccCCC--CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence            335676 6666554443  8999999998874443 2233445778888888876  57889999999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||||||++.||..-+.++...+.+.
T Consensus       153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk~l  182 (352)
T COG3842         153 PEPKVLLLDEPLSALDAKLREQMRKELKEL  182 (352)
T ss_pred             cCcchhhhcCcccchhHHHHHHHHHHHHHH
Confidence            999999999999999999999888877653

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=3e-36  Score=250.02  Aligned_cols=170  Identities=18%  Similarity=0.225  Sum_probs=137.7

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-c-CCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVK-----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~-~~~~~~-----  147 (255)
                      .++|++++|+++||+  +.|  ++|+||+|++||+++|+||||||||||||+|.|+++   |++|+ . ++.++.     
T Consensus         6 ~~~I~vr~v~~~fG~--~~I--ld~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~   78 (263)
T COG1127           6 EPLIEVRGVTKSFGD--RVI--LDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE   78 (263)
T ss_pred             cceEEEeeeeeecCC--EEE--ecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence            468999999999998  444  499999999999999999999999999999999999   99999 3 343321     


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~  218 (255)
                           ...+|. +++.+-.+.  .+++.+|+.+..+.+. ++.......+..-++.+++.   .++++.+|||||++|++
T Consensus        79 ~~~~ir~r~Gv-lFQ~gALFs--sltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva  155 (263)
T COG1127          79 ELYEIRKRMGV-LFQQGALFS--SLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA  155 (263)
T ss_pred             HHHHHHhheeE-Eeecccccc--ccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence                 234776 555554433  3789999887655443 34444444455667777776   46889999999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|||++.+|+++++||||+||||.+...+.++|.+.
T Consensus       156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L  191 (263)
T COG1127         156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIREL  191 (263)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999988754

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=6.7e-36  Score=254.23  Aligned_cols=168  Identities=17%  Similarity=0.175  Sum_probs=130.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++||+++|++  +.+  ++|+||+|++|++++|+||||||||||||+|+|+++   |.+|+ .+++...        
T Consensus         2 ~L~~~~ls~~y~~--~~i--l~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel   74 (258)
T COG1120           2 MLEVENLSFGYGG--KPI--LDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL   74 (258)
T ss_pred             eeEEEEEEEEECC--eeE--EecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence            6899999999997  444  599999999999999999999999999999999998   99999 5555322        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCC---CccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW---TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~---~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                      ....++ +.+.....+  .+++.+.+...+.- .+...   ..+...+..+++.+++.  .++.+..|||||||||.||+
T Consensus        75 Ak~ia~-vpQ~~~~~~--~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr  151 (258)
T COG1120          75 AKKLAY-VPQSPSAPF--GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR  151 (258)
T ss_pred             hhhEEE-eccCCCCCC--CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence            124555 444432221  25666655443322 12221   22333566778888775  56779999999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+.+|++|+|||||+.||..++.++++++.+.
T Consensus       152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l  184 (258)
T COG1120         152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRDL  184 (258)
T ss_pred             HHhcCCCEEEeCCCccccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998753

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.3e-36  Score=247.46  Aligned_cols=170  Identities=18%  Similarity=0.208  Sum_probs=132.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------  147 (255)
                      .+|+++||++.|.+. +.  +|+||||+|++||+++|+|+||||||||||+|+|+..   |++|+ .+++. +.      
T Consensus         2 ~~i~~~nl~k~yp~~-~~--aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k~   75 (258)
T COG3638           2 MMIEVKNLSKTYPGG-HQ--ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGKE   75 (258)
T ss_pred             ceEEEeeeeeecCCC-ce--eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchHH
Confidence            589999999999432 33  6699999999999999999999999999999999998   99999 44442 11      


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChH--------HHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCccc
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPK--------EAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV  213 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~--------~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~  213 (255)
                          +.+.|. +++..-...+  +++.+|+.        .++..++++...+.....+.|+.+++..  ..+...|||||
T Consensus        76 lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQ  152 (258)
T COG3638          76 LRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQ  152 (258)
T ss_pred             HHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcch
Confidence                235776 4433322222  44444432        2344556555555666788999998863  46678999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|||+|||+|+.+|+|+|.|||++.|||.+.++++++|.+.
T Consensus       153 QQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~i  193 (258)
T COG3638         153 QQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDI  193 (258)
T ss_pred             hHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999764

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.2e-35  Score=247.86  Aligned_cols=171  Identities=15%  Similarity=0.126  Sum_probs=142.6

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC--------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------  146 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~--------  146 (255)
                      .+++++++++.|++. ..  +++++||+|++|++++|+|+||||||||+++++|+++   |++|+ .+++..        
T Consensus         2 ~~i~~~~l~~~y~~~-~~--~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~   75 (235)
T COG1122           2 RMIEAENLSFRYPGR-KA--ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL   75 (235)
T ss_pred             ceEEEEEEEEEcCCC-ce--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence            578999999999874 23  6699999999999999999999999999999999998   99999 454432        


Q ss_pred             -CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       147 -~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       ....+|.+++..+..+..  -++.+++.+...+.+++......++.++++.+++.  .++.+..|||||||||+||.+|
T Consensus        76 ~~~~~vG~VfQnpd~q~~~--~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL  153 (235)
T COG1122          76 ELRQKVGLVFQNPDDQLFG--PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL  153 (235)
T ss_pred             HhhcceEEEEECccccccc--CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence             135688744444433333  37778888888888887655566778888888876  5677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++|||||||++||+..+..+++++.+.
T Consensus       154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L  184 (235)
T COG1122         154 AMGPEILLLDEPTAGLDPKGRRELLELLKKL  184 (235)
T ss_pred             HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999764

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.8e-35  Score=239.31  Aligned_cols=168  Identities=17%  Similarity=0.170  Sum_probs=136.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC-CCC------C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS-QVK------P  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~-~~~------~  148 (255)
                      ||++.+++|+|+...   .+++||||++++|+++||+|||||||||+||+|++++.   |++|+ .+++ +..      +
T Consensus         1 Ml~v~~l~K~y~~~v---~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           1 MLEVTDLTKSYGSKV---QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             CeeeeehhhhccCHH---hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence            689999999998732   26799999999999999999999999999999999998   99999 4443 211      2


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ..+|. +. +...+ ...+++.+++.++.+.+++.......+...+.+.|++.  .++++..||.||||||++|+||+.+
T Consensus        75 r~IGV-l~-~e~gl-Y~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~  151 (245)
T COG4555          75 RKIGV-LF-GERGL-YARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD  151 (245)
T ss_pred             hhcce-ec-CCcCh-hhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence            33554 22 22222 23478899999999888876544455666777777765  5788899999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++++|||++|||...+..+.+++..
T Consensus       152 P~i~vlDEP~sGLDi~~~r~~~dfi~q  178 (245)
T COG4555         152 PSILVLDEPTSGLDIRTRRKFHDFIKQ  178 (245)
T ss_pred             CCeEEEcCCCCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999865

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=1.6e-34  Score=255.41  Aligned_cols=169  Identities=17%  Similarity=0.143  Sum_probs=132.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------  147 (255)
                      .+|+++||+|.|++  +.  +|+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++. ..      
T Consensus         6 ~~i~i~~l~k~~~~--~~--~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~~   78 (306)
T PRK13537          6 APIDFRNVEKRYGD--KL--VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARHA   78 (306)
T ss_pred             ceEEEEeEEEEECC--eE--EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHHH
Confidence            58999999999986  33  6699999999999999999999999999999999998   99999 44442 21      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +..+.. ++ ..+++.+++.+....++...........++++.+++.  .++++..||+||+||+++|++|+.
T Consensus        79 ~~~ig~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~  155 (306)
T PRK13537         79 RQRVGV-VPQFDN-LD-PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALVN  155 (306)
T ss_pred             HhcEEE-EeccCc-CC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHhC
Confidence            123565 443322 11 2367777777655554433222233456778887775  367788999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|||||||++||+.++..+++++.+.
T Consensus       156 ~P~lllLDEPt~gLD~~~~~~l~~~l~~l  184 (306)
T PRK13537        156 DPDVLVLDEPTTGLDPQARHLMWERLRSL  184 (306)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999763

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.2e-34  Score=234.90  Aligned_cols=169  Identities=15%  Similarity=0.147  Sum_probs=125.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-----Cc-cCCC-CCC
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS-SFDS-QVK  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~-----G~-~~~~-~~~  147 (255)
                      ++.++++||++.||+..    +|+|||+.|++++++||+||+|||||||||+++.+..   ...     |+ .+++ ++.
T Consensus         5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd---l~~~~r~~G~v~~~g~ni~   77 (253)
T COG1117           5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND---LIPGARVEGEVLLDGKNIY   77 (253)
T ss_pred             cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc---cCcCceEEEEEEECCeecc
Confidence            45799999999999854    6699999999999999999999999999999999875   433     44 2222 222


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH------HHHhhcccCCccCCCCCcc
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN------CLKNLRNQGSVYAPSFDHG  212 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~l~~l~~~~~~~~~~lS~G  212 (255)
                               +..+|.+ ++..-.++   ++..+|+.+..+..|+....-.+.+.+      +++.+.-..+.....||||
T Consensus        78 ~~~~d~~~lRr~vGMV-FQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGG  153 (253)
T COG1117          78 DPKVDVVELRRRVGMV-FQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGG  153 (253)
T ss_pred             CCCCCHHHHHHHheee-ccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChh
Confidence                     2345653 33222222   466777777777777633211122222      2333333455667789999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||++|||+|+.+|+||||||||+.|||.+..++-++|.+.
T Consensus       154 QQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eL  195 (253)
T COG1117         154 QQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL  195 (253)
T ss_pred             HHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999764

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=2e-34  Score=257.76  Aligned_cols=170  Identities=15%  Similarity=0.120  Sum_probs=131.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-----  147 (255)
                      +.+|+++||+|.|++  +.  +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++. ..     
T Consensus        39 ~~~i~i~nl~k~y~~--~~--~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~  111 (340)
T PRK13536         39 TVAIDLAGVSKSYGD--KA--VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL  111 (340)
T ss_pred             ceeEEEEEEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence            568999999999987  33  5699999999999999999999999999999999998   99999 44442 21     


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       ...+|+ +..+...+  ..+++.+++.+....++............+++.+++.  .+.++..||+||+||+++|++|+
T Consensus       112 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~  188 (340)
T PRK13536        112 ARARIGV-VPQFDNLD--LEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI  188 (340)
T ss_pred             HhccEEE-EeCCccCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence             223565 33332211  2256777666544444332211223455678877776  56788999999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++|||||||++||+.++..++++|.+.
T Consensus       189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l  218 (340)
T PRK13536        189 NDPQLLILDEPTTGLDPHARHLIWERLRSL  218 (340)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999763

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.6e-34  Score=259.88  Aligned_cols=169  Identities=15%  Similarity=0.122  Sum_probs=133.6

Q ss_pred             CCeEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293           75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      |.+|+++||++.| ++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...     
T Consensus         1 m~~l~i~~l~~~~~~~--~~--~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~   73 (356)
T PRK11650          1 MAGLKLQAVRKSYDGK--TQ--VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP   73 (356)
T ss_pred             CCEEEEEeEEEEeCCC--CE--EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            4579999999999 65  33  5599999999999999999999999999999999998   99999 4554321     


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       ...+|+ +.++...+  +.+++.+++.+.....+.........+.++++.+++.  .++++..|||||+|||+|||+|+
T Consensus        74 ~~r~ig~-v~Q~~~lf--p~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~  150 (356)
T PRK11650         74 ADRDIAM-VFQNYALY--PHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV  150 (356)
T ss_pred             HHCCEEE-EeCCcccc--CCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence             234665 45444322  2368888877665443332222234567788888875  46788899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++|||||||++||+..+..+.+.|.+
T Consensus       151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~  179 (356)
T PRK11650        151 REPAVFLFDEPLSNLDAKLRVQMRLEIQR  179 (356)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998865

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2e-34  Score=257.61  Aligned_cols=172  Identities=17%  Similarity=0.173  Sum_probs=132.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-------  147 (255)
                      ||+++||+|.|++......+|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++. +.       
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l   77 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL   77 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence            58999999999632111226699999999999999999999999999999999998   99999 45443 21       


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ...+|. +.+.. .+. ...++.+++.+.....+.........+.++++.+++.  .+.++..|||||||||+||+|
T Consensus        78 ~~~r~~Ig~-v~Q~~-~l~-~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA  154 (343)
T TIGR02314        78 TKARRQIGM-IFQHF-NLL-SSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA  154 (343)
T ss_pred             HHHhcCEEE-EECCc-ccc-ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence               124565 44432 222 1256777776654443333222334567888888875  467889999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+.++..+.++|.+.
T Consensus       155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l  186 (343)
T TIGR02314       155 LASNPKVLLCDEATSALDPATTQSILELLKEI  186 (343)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998764

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-34  Score=257.55  Aligned_cols=170  Identities=16%  Similarity=0.168  Sum_probs=135.5

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .|++|+++||++.|++  +.  +++|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...     
T Consensus         3 ~~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   75 (351)
T PRK11432          3 QKNFVVLKNITKRFGS--NT--VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI   75 (351)
T ss_pred             CCcEEEEEeEEEEECC--eE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            4678999999999986  33  5599999999999999999999999999999999998   99999 4554321     


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       ...+|. +.+++..++  .+++.+++.+.....+.........+.++++.+++.  .++++..|||||+|||++||+|+
T Consensus        76 ~~r~ig~-vfQ~~~lfp--~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~  152 (351)
T PRK11432         76 QQRDICM-VFQSYALFP--HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI  152 (351)
T ss_pred             HHCCEEE-EeCCcccCC--CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence             234565 444433222  267888877665544433323344667788888775  46778999999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||||||+++||+..+.++.+.|.+
T Consensus       153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  181 (351)
T PRK11432        153 LKPKVLLFDEPLSNLDANLRRSMREKIRE  181 (351)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998865

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=2.4e-34  Score=245.99  Aligned_cols=167  Identities=17%  Similarity=0.233  Sum_probs=137.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---------  146 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~---------  146 (255)
                      +|++++++|.|+...    +++||+++|+.||.++|+||||||||||||+|+|++.   |+.|. .+++..         
T Consensus         2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~   74 (345)
T COG1118           2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV   74 (345)
T ss_pred             ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence            588999999999854    6699999999999999999999999999999999998   99999 555541         


Q ss_pred             CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-C-CCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       147 ~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                      ....+|. +.+++..+.  .+++.+|+.+..+.... + .......+.++++.+.+.  .+.|+.+|||||+|||++|||
T Consensus        75 ~~R~VGf-vFQ~YALF~--HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA  151 (345)
T COG1118          75 RDRKVGF-VFQHYALFP--HMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA  151 (345)
T ss_pred             hhcceeE-EEechhhcc--cchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence            1345776 566655333  37999999887765532 2 223344567777777776  578999999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++|||||||..||...+.++...+.+
T Consensus       152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~  182 (345)
T COG1118         152 LAVEPKVLLLDEPFGALDAKVRKELRRWLRK  182 (345)
T ss_pred             hhcCCCeEeecCCchhhhHHHHHHHHHHHHH
Confidence            9999999999999999999999999888765

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=2.7e-34  Score=241.74  Aligned_cols=169  Identities=17%  Similarity=0.168  Sum_probs=126.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++|+++.|++..+.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 ~l~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   75 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQP--ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI   75 (216)
T ss_pred             CeEEEEEEEEecCCCee--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence            47899999999642123  5599999999999999999999999999999999998   99998 4544311        


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ...+++ +.++...+  ..+++.+++.+.....+.........+.++++.+++.  .+..+..|||||+||+++|++
T Consensus        76 ~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  152 (216)
T TIGR00960        76 PFLRRHIGM-VFQDHRLL--SDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA  152 (216)
T ss_pred             HHHHHhceE-EecCcccc--ccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence               112454 34332211  1246666655443333322112234567788888875  356778999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+.++..+.+++.+
T Consensus       153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  183 (216)
T TIGR00960       153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEE  183 (216)
T ss_pred             HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=4.9e-34  Score=256.43  Aligned_cols=170  Identities=14%  Similarity=0.114  Sum_probs=135.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||++.|++  +.  +++|+||+|++||+++|+|||||||||||++|+|+++   |++|+ .+++...      
T Consensus         2 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265         2 SPYLSIDNIRKRFGA--FT--ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             CcEEEEEEEEEEeCC--eE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            568999999999987  33  5599999999999999999999999999999999998   99999 5554321      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +.++...++  .+++.+++.+.....+.........+.++++.+++.  .+.++..|||||+|||++||+|+.
T Consensus        75 ~r~ig~-v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~  151 (353)
T TIGR03265        75 KRDYGI-VFQSYALFP--NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT  151 (353)
T ss_pred             HCCEEE-EeCCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            123565 444433222  368888887765544433223344667888888876  367889999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++||||||+++||+..+..+++.+.+.
T Consensus       152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~l  180 (353)
T TIGR03265       152 SPGLLLLDEPLSALDARVREHLRTEIRQL  180 (353)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988653

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=9.3e-34  Score=250.28  Aligned_cols=168  Identities=15%  Similarity=0.126  Sum_probs=127.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||++.|++  +.  +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         3 ~~i~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   75 (303)
T TIGR01288         3 VAIDLVGVSKSYGD--KV--VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLA   75 (303)
T ss_pred             cEEEEEeEEEEeCC--eE--EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHH
Confidence            37999999999986  33  5599999999999999999999999999999999998   99999 4444211       


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +.++...+  ..+++.+++.+.....+.........+..+++.+++..  +.++..|||||+||+++|++|+.
T Consensus        76 ~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~  152 (303)
T TIGR01288        76 RVAIGV-VPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIN  152 (303)
T ss_pred             hhcEEE-EeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence            123555 44332211  22566666654333333221111233456778777753  67788999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+.++..+.+++.+
T Consensus       153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~  180 (303)
T TIGR01288       153 DPQLLILDEPTTGLDPHARHLIWERLRS  180 (303)
T ss_pred             CCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999875

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.6e-34  Score=256.47  Aligned_cols=169  Identities=14%  Similarity=0.079  Sum_probs=131.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||++.|++  +.  +|+|+||+|++|++++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 m~~l~i~~l~~~~~~--~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~   73 (369)
T PRK11000          1 MASVTLRNVTKAYGD--VV--ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA   73 (369)
T ss_pred             CCEEEEEEEEEEeCC--eE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence            457999999999986  33  5599999999999999999999999999999999998   99999 4544221      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +.++...++  .+++.+++.+.....+.........+.++++.+++.  .+.++..|||||+||+++|++|+.
T Consensus        74 ~~~i~~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~  150 (369)
T PRK11000         74 ERGVGM-VFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (369)
T ss_pred             HCCEEE-EeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            123555 444432222  257777776654433332222234567788888876  467788999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..++.+.++|.+
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~  178 (369)
T PRK11000        151 EPSVFLLDEPLSNLDAALRVQMRIEISR  178 (369)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998865

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=9.7e-34  Score=238.66  Aligned_cols=168  Identities=18%  Similarity=0.190  Sum_probs=124.3

Q ss_pred             EEecCchheehhhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293           78 VEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      |+++||++.|++..  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++... .     
T Consensus         1 l~~~~l~~~~~~~~~~~~--il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~   75 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQ--ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKE   75 (218)
T ss_pred             CeEeeeEEEecCCCccee--EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhH
Confidence            47899999997521  22  5699999999999999999999999999999999998   99999 4544211 1     


Q ss_pred             ------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la  220 (255)
                            ..+++ +..+...+  ..+++.+++.+.....+.........+.++++.+++..  +..+..||+||+||+++|
T Consensus        76 ~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  152 (218)
T cd03255          76 LAAFRRRHIGF-VFQSFNLL--PDLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIA  152 (218)
T ss_pred             HHHHHhhcEEE-EeeccccC--CCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHH
Confidence                  12444 33322211  12455555554333222211112234567888887753  567789999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+.+|++|||||||++||+.++..+.+++.+
T Consensus       153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  185 (218)
T cd03255         153 RALANDPKIILADEPTGNLDSETGKEVMELLRE  185 (218)
T ss_pred             HHHccCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=1e-33  Score=237.76  Aligned_cols=166  Identities=19%  Similarity=0.258  Sum_probs=123.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++|+++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03259           1 LELKGLSKTYGS--VR--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN   73 (213)
T ss_pred             CeeeeeEEEeCC--ee--eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence            468999999976  34  5599999999999999999999999999999999998   99998 4444211      112


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      +++ +.+... +. ..+++.++..+.....+.........+.++++.+++..  +.++..||+||+||+++|++|+.+|+
T Consensus        74 i~~-v~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~  150 (213)
T cd03259          74 IGM-VFQDYA-LF-PHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS  150 (213)
T ss_pred             EEE-EcCchh-hc-cCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            444 333221 11 12455555543322222211112234567788887753  56678999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+||||++||+.++..+.+++.+
T Consensus       151 ~lllDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03259         151 LLLLDEPLSALDAKLREELREELKE  175 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.4e-33  Score=238.14  Aligned_cols=166  Identities=16%  Similarity=0.146  Sum_probs=125.5

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (255)
                      |+++|+++.|++  +.  +++|+||+|.+||+++|+||||||||||+++|+|+++   |++|+ .+++...       ..
T Consensus         1 i~~~~~~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (220)
T cd03265           1 IEVENLVKKYGD--FE--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR   73 (220)
T ss_pred             CEEEEEEEEECC--EE--eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence            478999999986  34  5599999999999999999999999999999999998   99998 4444221       11


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      ..++ +..+...+  ..+++.+++.+.....+.........+.++++.+++..  +.++..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p  150 (220)
T cd03265          74 RIGI-VFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP  150 (220)
T ss_pred             cEEE-ecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            2444 33332211  22455565554433333221122334567888888753  6778899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+||||++||+.+++.+.++|.+
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~  176 (220)
T cd03265         151 EVLFLDEPTIGLDPQTRAHVWEYIEK  176 (220)
T ss_pred             CEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998865

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.7e-34  Score=228.31  Aligned_cols=173  Identities=13%  Similarity=0.215  Sum_probs=144.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-CC--CC
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-KP--PD  150 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~~--~~  150 (255)
                      |.++.+++++.+|++  +...+++|+|++|.+||.+.++|||||||||||++++|+.+   |+.|+ ..++.. ..  .+
T Consensus         1 M~~l~~~~~sl~y~g--~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae   75 (259)
T COG4525           1 MCMLNVSHLSLSYEG--KPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE   75 (259)
T ss_pred             CceeehhheEEecCC--cchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence            567889999999988  44446699999999999999999999999999999999999   99998 444432 22  24


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .|. ++++.-.++.  +++.+|..+..+..|+.+........+.+..+++.  .++++-+|||||+||+.+||||+.+|+
T Consensus        76 rgv-VFQ~~~LlPW--l~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~  152 (259)
T COG4525          76 RGV-VFQNEALLPW--LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ  152 (259)
T ss_pred             cee-EeccCccchh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence            665 4454443333  68889999999999987766666677888888876  567888999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHhhC
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDEKW  255 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~~~  255 (255)
                      +|+|||||..||.-.++++.+++.+.|
T Consensus       153 ~LlLDEPfgAlDa~tRe~mQelLldlw  179 (259)
T COG4525         153 LLLLDEPFGALDALTREQMQELLLDLW  179 (259)
T ss_pred             eEeecCchhhHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999987765

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=1.3e-33  Score=255.25  Aligned_cols=172  Identities=19%  Similarity=0.192  Sum_probs=134.8

Q ss_pred             cCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----
Q 025293           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        73 ~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----  147 (255)
                      .++++|+++||++.|++  +.  +++++||+|++||+++|+|||||||||||++|+|+++   |++|+ .+++...    
T Consensus        10 ~~~~~L~l~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~   82 (375)
T PRK09452         10 SLSPLVELRGISKSFDG--KE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVP   82 (375)
T ss_pred             cCCceEEEEEEEEEECC--eE--EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCC
Confidence            34568999999999986  33  5599999999999999999999999999999999998   99999 4555321    


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                        ...+|+ +.++...++  .+++.+++.+.....+.+.......+..+++.+++.  .++++..|||||+|||++||+|
T Consensus        83 ~~~r~ig~-vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL  159 (375)
T PRK09452         83 AENRHVNT-VFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV  159 (375)
T ss_pred             HHHCCEEE-EecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence              223565 444433222  367878877655433332222233566788888876  4678889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++|||||||++||+..+..+++.|.+.
T Consensus       160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l  190 (375)
T PRK09452        160 VNKPKVLLLDESLSALDYKLRKQMQNELKAL  190 (375)
T ss_pred             hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998653

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.6e-33  Score=236.70  Aligned_cols=168  Identities=14%  Similarity=0.140  Sum_probs=124.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++|+++.|++. +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 ~l~~~~l~~~~~~~-~~--il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (214)
T TIGR02673         1 MIEFHNVSKAYPGG-VA--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQL   74 (214)
T ss_pred             CEEEEeeeEEeCCC-ce--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence            47899999999421 33  5599999999999999999999999999999999998   99998 4444211        


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~  222 (255)
                         ....++ +..+.. ++ ..+++.++..+.....+.........+.++++.+++..  +..+..||+||+||+++|++
T Consensus        75 ~~~~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  151 (214)
T TIGR02673        75 PLLRRRIGV-VFQDFR-LL-PDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARA  151 (214)
T ss_pred             HHHHhheEE-EecChh-hc-cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence               112344 333322 11 12455555544333222211112234567788887753  46678999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|+++||||||++||+.++..+.++|.+
T Consensus       152 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  182 (214)
T TIGR02673       152 IVNSPPLLLADEPTGNLDPDLSERILDLLKR  182 (214)
T ss_pred             HhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.2e-33  Score=238.52  Aligned_cols=170  Identities=18%  Similarity=0.218  Sum_probs=125.2

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEE
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVAT  153 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~  153 (255)
                      |+++||++.|++......+++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~   77 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY   77 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence            4689999999751100115699999999999999999999999999999999998   99998 4444221   233454


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                       +.+....+  ..+++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++|+.+|+++|
T Consensus        78 -v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll  154 (220)
T cd03293          78 -VFQQDALL--PWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL  154 (220)
T ss_pred             -Eecccccc--cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence             33332211  1245555555433333322112234456788888775  356778999999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||++||+.++..+.++|.+
T Consensus       155 LDEPt~~LD~~~~~~~~~~l~~  176 (220)
T cd03293         155 LDEPFSALDALTREQLQEELLD  176 (220)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=9.9e-34  Score=235.21  Aligned_cols=167  Identities=17%  Similarity=0.195  Sum_probs=140.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC---CCCe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK---PPDV  151 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~---~~~~  151 (255)
                      ++++++|+|+||+..    +++|+||++++|++.|++|+|||||||++|+|+|++.   |++|+ .+++. +.   ...+
T Consensus         2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI   74 (300)
T ss_pred             ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence            589999999999954    6699999999999999999999999999999999998   99999 44443 22   2345


Q ss_pred             EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCcE
Q 025293          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      |+...--|.+.   .+++.+.+.++....|++.......+..+++++.+..  ..++..||.|++|++.+..+++++|++
T Consensus        75 GyLPEERGLy~---k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL  151 (300)
T COG4152          75 GYLPEERGLYP---KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL  151 (300)
T ss_pred             ccChhhhccCc---cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence            55322233332   3678888889999999987777778888999988864  567889999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||||+||||.+.+.+.+.+.+
T Consensus       152 lILDEPFSGLDPVN~elLk~~I~~  175 (300)
T COG4152         152 LILDEPFSGLDPVNVELLKDAIFE  175 (300)
T ss_pred             EEecCCccCCChhhHHHHHHHHHH
Confidence            999999999999999999988765

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.2e-33  Score=237.99  Aligned_cols=172  Identities=13%  Similarity=0.082  Sum_probs=127.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      ++|+++||++.|++......+|+++||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++... .     
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence            479999999999742111125699999999999999999999999999999999998   99999 4554221 1     


Q ss_pred             ------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                            ..+++ +.++.. ++ ..+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|
T Consensus        81 ~~~~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la  157 (233)
T PRK11629         81 KAELRNQKLGF-IYQFHH-LL-PDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA  157 (233)
T ss_pred             HHHHHhccEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence                  23454 444322 21 1246666655433222222112223456788888875  3566789999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++++.+|++||+||||++||+.++..+.++|.+
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (233)
T PRK11629        158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGE  190 (233)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.2e-33  Score=252.74  Aligned_cols=167  Identities=13%  Similarity=0.179  Sum_probs=133.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC--Cc-cCCCCCC------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQVK------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~--G~-~~~~~~~------  147 (255)
                      .|+++||+|.|++  +.  +++|+||+|.+||+++|+|||||||||||++|+|+++   |++  |+ .+++...      
T Consensus         5 ~l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~   77 (362)
T TIGR03258         5 GIRIDHLRVAYGA--NT--VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH   77 (362)
T ss_pred             EEEEEEEEEEECC--eE--EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence            4789999999986  33  5699999999999999999999999999999999998   999  99 4554321      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|. +.++.. ++ ..+++.+++.+.....+.+.......+.++++.+++.  .++++..|||||+|||++|++|+.
T Consensus        78 ~r~ig~-vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~  154 (362)
T TIGR03258        78 KRGLAL-LFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI  154 (362)
T ss_pred             HCCEEE-EECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            134565 444432 22 2368888887765544443222334567788888876  467889999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..+.++++.|.+
T Consensus       155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~  182 (362)
T TIGR03258       155 EPDVLLLDEPLSALDANIRANMREEIAA  182 (362)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998865

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3e-33  Score=250.80  Aligned_cols=170  Identities=16%  Similarity=0.176  Sum_probs=129.2

Q ss_pred             eEEecCchheehhh--hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           77 VVEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~--~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ||+++||+++|++.  .+.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...      
T Consensus         1 mi~i~~l~~~y~~~~~~~~--il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~   75 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIH--ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEK   75 (343)
T ss_pred             CEEEEeEEEEeCCCCCceE--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHH
Confidence            58999999999721  123  5699999999999999999999999999999999998   99999 4544211      


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                           ...+|+ +.+... ++ ..+++.++..+.....+.........+.++++.+++.  .+.++..|||||+||+++|
T Consensus        76 ~~~~~~~~ig~-v~q~~~-l~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lA  152 (343)
T PRK11153         76 ELRKARRQIGM-IFQHFN-LL-SSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIA  152 (343)
T ss_pred             HHHHHhcCEEE-EeCCCc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence                 123555 443322 21 1256667666554433432222233556788888875  3567889999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       153 raL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l  186 (343)
T PRK11153        153 RALASNPKVLLCDEATSALDPATTRSILELLKDI  186 (343)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2.6e-33  Score=238.71  Aligned_cols=166  Identities=18%  Similarity=0.247  Sum_probs=123.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++  +.  +++|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (235)
T cd03261           1 IELRGLTKSFGG--RT--VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY   73 (235)
T ss_pred             CeEEEEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence            478999999976  34  5599999999999999999999999999999999998   99999 4444211         


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~  222 (255)
                        ...+++ +.+... +. ..+++.+++.+..... +.........+..+++.+++..  +.++..|||||+||+++|++
T Consensus        74 ~~~~~i~~-v~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a  150 (235)
T cd03261          74 RLRRRMGM-LFQSGA-LF-DSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA  150 (235)
T ss_pred             HHhcceEE-EccCcc-cC-CCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence              112444 333322 11 1246656554432211 1111111234567788888753  56788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+.++..+.+++.+
T Consensus       151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  181 (235)
T cd03261         151 LALDPELLLYDEPTAGLDPIASGVIDDLIRS  181 (235)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=3.3e-33  Score=234.16  Aligned_cols=166  Identities=17%  Similarity=0.186  Sum_probs=125.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----CCCeE
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDVA  152 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----~~~~g  152 (255)
                      ++++|+++.|++  +.  +++|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++...    ....+
T Consensus         1 l~~~~l~~~~~~--~~--~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGR--VT--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG   73 (210)
T ss_pred             CEEEEEEEEECC--EE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence            478999999976  34  4599999999999999999999999999999999998   99999 4554321    12344


Q ss_pred             EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                      + +.++...+  ..+++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|++++.+|+++
T Consensus        74 ~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l  150 (210)
T cd03269          74 Y-LPEERGLY--PKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL  150 (210)
T ss_pred             E-eccCCcCC--cCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            4 33332211  1246666655443333332222233456778888775  35667899999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||||++||+.++..+.+++.+
T Consensus       151 llDEP~~~LD~~~~~~~~~~l~~  173 (210)
T cd03269         151 ILDEPFSGLDPVNVELLKDVIRE  173 (210)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999865

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.4e-33  Score=240.96  Aligned_cols=167  Identities=13%  Similarity=0.150  Sum_probs=126.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeE
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA  152 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g  152 (255)
                      ||+++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....|
T Consensus         1 ml~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   73 (255)
T PRK11248          1 MLQISHLYADYGG--KP--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG   73 (255)
T ss_pred             CEEEEEEEEEeCC--ee--eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence            4789999999976  33  4599999999999999999999999999999999998   99999 4544221   12345


Q ss_pred             EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCcEE
Q 025293          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                      + +.+....+  ..+++.+++.+.....+.........+.++++.+++..  +.++..|||||+||+++|++|+.+|++|
T Consensus        74 ~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll  150 (255)
T PRK11248         74 V-VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL  150 (255)
T ss_pred             E-EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            4 33332211  12455555544332223221112234667888888753  5677899999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||||++||+.++..+.++|.+
T Consensus       151 lLDEPt~~LD~~~~~~l~~~L~~  173 (255)
T PRK11248        151 LLDEPFGALDAFTREQMQTLLLK  173 (255)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999875

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=4.1e-33  Score=235.29  Aligned_cols=171  Identities=16%  Similarity=0.083  Sum_probs=124.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------  148 (255)
                      +|+++||++.|++......+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++... .      
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER   77 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence            47899999999642111125599999999999999999999999999999999998   99999 4444211 0      


Q ss_pred             -----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                           ..+++ +.++...+.  .+++.++..+...............+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        78 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  154 (221)
T TIGR02211        78 AKLRNKKLGF-IYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR  154 (221)
T ss_pred             HHHHHhcEEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence                 22444 443322111  245555554432222221111223456778888775  35677899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|++|||||||++||+.++..+.++|.+
T Consensus       155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~  186 (221)
T TIGR02211       155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLE  186 (221)
T ss_pred             HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999864

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=6e-33  Score=235.43  Aligned_cols=173  Identities=17%  Similarity=0.098  Sum_probs=126.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      +++|+++||++.|++......+++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++... .    
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~   80 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE   80 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence            3589999999999752111115599999999999999999999999999999999998   99998 4444211 1    


Q ss_pred             -------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhh
Q 025293          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 -------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~l  219 (255)
                             ..+++ +..... +. ..+++.+++.+.....+.........+.++++.+++..  +..+..||+||+||+++
T Consensus        81 ~~~~~~~~~i~~-~~q~~~-l~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l  157 (228)
T PRK10584         81 ARAKLRAKHVGF-VFQSFM-LI-PTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL  157 (228)
T ss_pred             HHHHHHhheEEE-EEcccc-cC-CCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence                   12444 333322 21 12455555543322222211122334567788887753  56788999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  191 (228)
T PRK10584        158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS  191 (228)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999865

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=3.2e-33  Score=235.46  Aligned_cols=171  Identities=16%  Similarity=0.155  Sum_probs=127.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      ||+++||++.|++..+...+++|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...       .
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   77 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR   77 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence            47899999999763111115599999999999999999999999999999999998   99998 4444221       1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ..+++ +..+.. ++ ..+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+
T Consensus        78 ~~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  154 (218)
T cd03266          78 RRLGF-VSDSTG-LY-DRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD  154 (218)
T ss_pred             hhEEE-ecCCcc-cC-cCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence            22444 333322 11 1245666655443333322212234556788888875  3677889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+||||++||+.+++.+.+++.+
T Consensus       155 p~illlDEPt~~LD~~~~~~l~~~l~~  181 (218)
T cd03266         155 PPVLLLDEPTTGLDVMATRALREFIRQ  181 (218)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.1e-33  Score=252.22  Aligned_cols=169  Identities=15%  Similarity=0.133  Sum_probs=133.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      +++|+++|+++.|++  ..  +++|+||+|++||+++|+||||||||||||+|+|+.+   |++|+ .+++...      
T Consensus        17 ~~~l~l~~v~~~~~~--~~--~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~   89 (377)
T PRK11607         17 TPLLEIRNLTKSFDG--QH--AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPPY   89 (377)
T ss_pred             CceEEEEeEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence            468999999999986  33  5599999999999999999999999999999999998   99999 5555321      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +.+++..+  +.+++.+|+.+.....+.........+.++++.+++.  .+.++..|||||+|||+|||+|+.
T Consensus        90 ~r~ig~-vfQ~~~lf--p~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~  166 (377)
T PRK11607         90 QRPINM-MFQSYALF--PHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAK  166 (377)
T ss_pred             HCCEEE-EeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            224665 45444322  2368888887665444333222234566788888875  467888999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..+..+.+.+.+
T Consensus       167 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  194 (377)
T PRK11607        167 RPKLLLLDEPMGALDKKLRDRMQLEVVD  194 (377)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998877654

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=3.6e-33  Score=246.30  Aligned_cols=168  Identities=17%  Similarity=0.180  Sum_probs=130.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      +++++|++|+|++  +.  +|+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...       .
T Consensus         2 ~l~~~~l~~~~~~--~~--~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~   74 (301)
T TIGR03522         2 SIRVSSLTKLYGT--QN--ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ   74 (301)
T ss_pred             EEEEEEEEEEECC--EE--EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence            5899999999986  33  5699999999999999999999999999999999998   99999 4444221       1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ..+|+ +..... ++ ..+++.+++.+....++.+..........+++.+++.  .++++..||+||+||+++|++|+.+
T Consensus        75 ~~ig~-~~q~~~-l~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (301)
T TIGR03522        75 RNIGY-LPEHNP-LY-LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD  151 (301)
T ss_pred             hceEE-ecCCCC-CC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            23555 333322 21 2256667666555444433222234567788888876  3677889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|||||||++||+.+++.+++++.+.
T Consensus       152 p~lliLDEPt~gLD~~~~~~l~~~l~~~  179 (301)
T TIGR03522       152 PKVLILDEPTTGLDPNQLVEIRNVIKNI  179 (301)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999998763

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=3.9e-33  Score=235.29  Aligned_cols=168  Identities=18%  Similarity=0.160  Sum_probs=125.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (255)
                      |+++||++.|++..++  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...       ..
T Consensus         1 l~~~~l~~~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (220)
T cd03263           1 LQIRNLTKTYKKGTKP--AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ   75 (220)
T ss_pred             CEEEeeEEEeCCCCce--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence            4789999999752122  5699999999999999999999999999999999998   99999 4544321       11


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      ..++ +..+...+  ...++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|++++.+|
T Consensus        76 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  152 (220)
T cd03263          76 SLGY-CPQFDALF--DELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP  152 (220)
T ss_pred             hEEE-ecCcCCcc--ccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence            2444 33332211  1245656655443333322211223456778877775  35677899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+||||++||+.+++.+.+++.+
T Consensus       153 ~llllDEP~~~LD~~~~~~l~~~l~~  178 (220)
T cd03263         153 SVLLLDEPTSGLDPASRRAIWDLILE  178 (220)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999875

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=6.9e-33  Score=246.77  Aligned_cols=179  Identities=16%  Similarity=0.168  Sum_probs=128.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCCCCc-cCCCCC-CC---
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQV-KP---  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~-~~p~~G~-~~~~~~-~~---  148 (255)
                      |.+|+++||++.|+.....+.+|+||||+|++||++||+|+||||||||+++|+|+++. ..|++|+ .+++.. ..   
T Consensus         1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022          1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            45799999999997632223367999999999999999999999999999999999851 0127787 444432 11   


Q ss_pred             --------CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc-----CCccCCCCCcccc
Q 025293          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG  214 (255)
Q Consensus       149 --------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lS~G~k  214 (255)
                              ..+++ +.++.+....+.+++.++........ +.........+.++++.+++.     .+.++.+|||||+
T Consensus        81 ~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~  159 (326)
T PRK11022         81 KERRNLVGAEVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS  159 (326)
T ss_pred             HHHHHHhCCCEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence                    13555 55544321222234333332222221 222122234567888888885     3578899999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+||++|+.+|++||+||||++||+.++.++.++|.+.
T Consensus       160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l  199 (326)
T PRK11022        160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL  199 (326)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=4.1e-33  Score=233.72  Aligned_cols=167  Identities=14%  Similarity=0.138  Sum_probs=122.0

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------C
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------P  149 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------~  149 (255)
                      +++||++.|++..+.  +++++||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++... .       .
T Consensus         1 ~~~~l~~~~~~~~~~--il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (211)
T cd03225           1 ELKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR   75 (211)
T ss_pred             CceeEEEecCCCCee--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence            368999999752122  5699999999999999999999999999999999998   99998 4444211 1       1


Q ss_pred             CeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          150 DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       150 ~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      .+++ +..+.. ..+  ..++.++..+.....+.........+.++++.+++.  .+.++..||+||+||+++|++|+.+
T Consensus        76 ~i~~-~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~  152 (211)
T cd03225          76 KVGL-VFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD  152 (211)
T ss_pred             hceE-EecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            2344 333321 111  145555554332222221111223456778878775  3567889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+||||++||+..+..+.++|.+
T Consensus       153 p~llllDEPt~~LD~~~~~~~~~~l~~  179 (211)
T cd03225         153 PDILLLDEPTAGLDPAGRRELLELLKK  179 (211)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999865

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=6.2e-34  Score=230.11  Aligned_cols=170  Identities=19%  Similarity=0.258  Sum_probs=130.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      |.++.++||.|+|+.  ++++  ++|||+|++||+|||+|||||||||.+.|+.|+.+   |++|+ .+++....     
T Consensus         2 ~~~L~a~~l~K~y~k--r~Vv--~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~   74 (243)
T COG1137           2 MSTLVAENLAKSYKK--RKVV--NDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH   74 (243)
T ss_pred             CcEEEehhhhHhhCC--eeee--eeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence            568999999999998  5555  99999999999999999999999999999999998   99999 44443211     


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                          --+|+ +.+.. .++ ..+++.+|+....+.......  .....+.++++.|.+.  .+.+...||||||+|+.||
T Consensus        75 ~RArlGigY-LpQE~-SIF-r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA  151 (243)
T COG1137          75 KRARLGIGY-LPQEA-SIF-RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA  151 (243)
T ss_pred             HHhhcCccc-ccccc-hHh-hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence                11333 22211 111 246777777666655442111  2233456788888876  4566779999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+|+.+|++++|||||+|.||.+...+..++.+.
T Consensus       152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L  185 (243)
T COG1137         152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIKHL  185 (243)
T ss_pred             HHHhcCCCEEEecCCccCCCchhHHHHHHHHHHH
Confidence            9999999999999999999999999999888653

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=6.4e-33  Score=235.99  Aligned_cols=169  Identities=18%  Similarity=0.186  Sum_probs=125.7

Q ss_pred             eEEecCchheehhhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ||+++|+++.|++..  ++  +++++||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 ~i~~~~l~~~~~~~~~~~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   75 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVT--ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGK   75 (233)
T ss_pred             CeEEecceEEccCCCCcee--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHH
Confidence            478999999997620  03  5599999999999999999999999999999999998   99998 4544321      


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la  220 (255)
                           ...+++ +..+.. .+ ..+++.++..+.....+.........+.++++.+++..  +.++..||+||+||+++|
T Consensus        76 ~~~~~~~~i~~-~~q~~~-~~-~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la  152 (233)
T cd03258          76 ELRKARRRIGM-IFQHFN-LL-SSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIA  152 (233)
T ss_pred             HHHHHHhheEE-EccCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHH
Confidence                 112343 333322 11 12466565554333223211112234567788887753  567789999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++++.+|+++||||||++||+.++..+.+++.+
T Consensus       153 ~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  185 (233)
T cd03258         153 RALANNPKVLLCDEATSALDPETTQSILALLRD  185 (233)
T ss_pred             HHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=5.6e-33  Score=233.20  Aligned_cols=166  Identities=16%  Similarity=0.140  Sum_probs=123.5

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C-----CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K-----PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~-----~~~  150 (255)
                      |+++|+++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++.. .     ...
T Consensus         1 i~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~   73 (213)
T cd03301           1 VELENVTKRFGN--VT--ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD   73 (213)
T ss_pred             CEEEeeEEEECC--ee--eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence            478999999987  34  5599999999999999999999999999999999998   99998 444421 1     112


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      +++ +..... +. ...++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  150 (213)
T cd03301          74 IAM-VFQNYA-LY-PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK  150 (213)
T ss_pred             EEE-EecChh-hc-cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            344 333322 11 1245555554432222221111223456677877775  466788999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.++..+.++|.+
T Consensus       151 llllDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03301         151 VFLMDEPLSNLDAKLRVQMRAELKR  175 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.1e-33  Score=242.85  Aligned_cols=172  Identities=15%  Similarity=0.116  Sum_probs=129.3

Q ss_pred             eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .|+++||++.|++... ...+|+|+||+|.+||++||+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL   78 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence            4899999999974210 0125699999999999999999999999999999999998   99999 4544221       


Q ss_pred             ---CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhh
Q 025293          148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ---~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~l  219 (255)
                         ...+|+ +.++. +.+..  .++.+++.+.....++........+..+++.+++.    .+.++..|||||+||++|
T Consensus        79 ~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i  155 (287)
T PRK13637         79 SDIRKKVGL-VFQYPEYQLFE--ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI  155 (287)
T ss_pred             HHHhhceEE-EecCchhcccc--ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence               123455 44432 22221  46666665544333332222223467788888885    467788999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l  190 (287)
T PRK13637        156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKEL  190 (287)
T ss_pred             HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998653

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=99.98  E-value=6.1e-33  Score=231.80  Aligned_cols=163  Identities=17%  Similarity=0.121  Sum_probs=122.6

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCCeE
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVA  152 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~g  152 (255)
                      +++||++.|++. +.  +++|+||+|++|++++|+|||||||||||++|+|+++   |++|+ .+++...     ...+|
T Consensus         1 ~~~~l~~~~~~~-~~--~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i~   74 (205)
T cd03226           1 RIENISFSYKKG-TE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSIG   74 (205)
T ss_pred             CcccEEEEeCCc-Cc--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcceE
Confidence            468999999751 12  5699999999999999999999999999999999998   99998 4444321     12345


Q ss_pred             EEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293          153 TVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       153 ~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      + +.++. +.+.  ..++.++..+.....+    .....+.++++.+++.  .+.++..||+||+||+++|++++.+|++
T Consensus        75 ~-~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l  147 (205)
T cd03226          75 Y-VMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDL  147 (205)
T ss_pred             E-EecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCE
Confidence            4 33332 1111  1355555443222111    1224567788888875  3567889999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||||++||+.+++.+.+++.+.
T Consensus       148 lllDEPt~~LD~~~~~~l~~~l~~~  172 (205)
T cd03226         148 LIFDEPTSGLDYKNMERVGELIREL  172 (205)
T ss_pred             EEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999998753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=99.98  E-value=7.8e-33  Score=236.00  Aligned_cols=167  Identities=18%  Similarity=0.136  Sum_probs=124.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------  148 (255)
                      +|+++|+++.|++  +.  +++++||+|.+|+++||+||||||||||+++|+|+++   |++|+ .+++... .      
T Consensus         1 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~   73 (236)
T TIGR03864         1 ALEVAGLSFAYGA--RR--ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL   73 (236)
T ss_pred             CEEEEeeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence            4789999999976  34  5599999999999999999999999999999999998   99998 4444211 1      


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ...++ +.++....  ...++.+++.......+.........+.++++.+++.  .+.++..||+||+||+++|++++.+
T Consensus        74 ~~i~~-~~q~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~  150 (236)
T TIGR03864        74 ARLGV-VFQQPTLD--LDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR  150 (236)
T ss_pred             hhEEE-eCCCCCCc--ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            12343 33322111  1245555554332222221111223456778877775  3567889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.+++.+.+++.+
T Consensus       151 p~llllDEP~~~LD~~~~~~l~~~l~~  177 (236)
T TIGR03864       151 PALLLLDEPTVGLDPASRAAIVAHVRA  177 (236)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998865

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=99.98  E-value=9.8e-33  Score=235.82  Aligned_cols=168  Identities=17%  Similarity=0.230  Sum_probs=124.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      +|+++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ..
T Consensus         2 ~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (239)
T cd03296           2 SIEVRNVSKRFGD--FV--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER   74 (239)
T ss_pred             EEEEEeEEEEECC--EE--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence            5899999999986  34  5599999999999999999999999999999999998   99998 4444211      12


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCC----CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                      ..++ +.++.. +. ..+++.++..+.....+.    ........+..+++.+++.  .+.++..||+||+||+++|++|
T Consensus        75 ~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al  151 (239)
T cd03296          75 NVGF-VFQHYA-LF-RHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL  151 (239)
T ss_pred             ceEE-EecCCc-cc-CCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence            2444 333322 11 124555555443222211    0011122345677877775  3567789999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+.+++.+.+++.+.
T Consensus       152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  182 (239)
T cd03296         152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRL  182 (239)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10908 cell division protein FtsE; Provisional

Probab=99.98  E-value=1.1e-32  Score=233.07  Aligned_cols=167  Identities=16%  Similarity=0.162  Sum_probs=123.6

Q ss_pred             eEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------  147 (255)
Q Consensus        77 ~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------  147 (255)
                      ||+++|+++.| ++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++. +.      
T Consensus         1 ~l~~~~l~~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~   73 (222)
T PRK10908          1 MIRFEHVSKAYLGG--RQ--ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE   73 (222)
T ss_pred             CEEEEeeEEEecCC--Ce--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence            47899999999 54  33  5599999999999999999999999999999999998   99999 44442 11      


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                          ....++ +.++.....  ..++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (222)
T PRK10908         74 VPFLRRQIGM-IFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR  150 (222)
T ss_pred             HHHHHhheEE-EecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence                112444 333322111  145555554433222222111122345677777765  35677899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (222)
T PRK10908        151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEE  182 (222)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998875

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=99.98  E-value=1.7e-32  Score=235.67  Aligned_cols=170  Identities=15%  Similarity=0.187  Sum_probs=125.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |++|+++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 m~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   73 (250)
T PRK11264          1 MSAIEVKNLVKKFHG--QT--VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL   73 (250)
T ss_pred             CCcEEEeceEEEECC--ee--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence            357999999999986  33  5599999999999999999999999999999999998   99998 4443211      


Q ss_pred             ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccc
Q 025293          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~k  214 (255)
                                ....++ +..+...+  ...++.+++.+.... .+.........+..+++.+++.  .+.++..||+||+
T Consensus        74 ~~~~~~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~  150 (250)
T PRK11264         74 SQQKGLIRQLRQHVGF-VFQNFNLF--PHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ  150 (250)
T ss_pred             cchhhHHHHhhhhEEE-EecCcccC--CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence                      112344 33332211  124555555442221 1211111223456677877775  3567889999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus       151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  190 (250)
T PRK11264        151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQL  190 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=99.98  E-value=7.3e-33  Score=232.57  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=121.7

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEEE
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATV  154 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~  154 (255)
                      +++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....++ 
T Consensus         1 ~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~-   72 (213)
T cd03235           1 EVEDLTVSYGG--HP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY-   72 (213)
T ss_pred             CcccceeEECC--EE--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE-
Confidence            46899999976  33  5599999999999999999999999999999999998   99999 4554321   223454 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhc-CC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      +.++.........++.+++.+..... ..   ........+..+++.+++.  .+.++..||+||+||+++|++|+.+|+
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  152 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD  152 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            33332211111134545443321110 00   0111223456778887775  456788999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+||||++||+.++..+.++|.+
T Consensus       153 llllDEPt~~LD~~~~~~l~~~l~~  177 (213)
T cd03235         153 LLLLDEPFAGVDPKTQEDIYELLRE  177 (213)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=99.98  E-value=1.1e-32  Score=234.28  Aligned_cols=167  Identities=21%  Similarity=0.261  Sum_probs=123.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++  +.  +++|+||+|.+|+++||+||||||||||+++|+|+++   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03218           1 LRAENLSKRYGK--RK--VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA   73 (232)
T ss_pred             CeEEEEEEEeCC--EE--eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence            478999999986  33  5599999999999999999999999999999999998   99999 4444211         


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ....++ +.++.. ++ ..+++.++........+.........+..+++.+++.  .+..+..||+||+||+++|++++.
T Consensus        74 ~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~  150 (232)
T cd03218          74 RLGIGY-LPQEAS-IF-RKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT  150 (232)
T ss_pred             hccEEE-ecCCcc-cc-ccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            112444 333221 11 1245555554433222221111223455777777775  356778999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++||+||||++||+.+++.+.+++.+.
T Consensus       151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~  179 (232)
T cd03218         151 NPKFLLLDEPFAGVDPIAVQDIQKIIKIL  179 (232)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998753

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.8e-32  Score=244.05  Aligned_cols=176  Identities=15%  Similarity=0.121  Sum_probs=130.0

Q ss_pred             CCeEEecCchheehhhh------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-
Q 025293           75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-  146 (255)
                      +++|+++||++.|+...      ..+.+++||||+|.+||++||+|+||||||||+++|+|+++   |++|+ .+++.. 
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l   79 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL   79 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence            46899999999996311      11336799999999999999999999999999999999998   99998 454422 


Q ss_pred             C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc---CCccCCCCCcc
Q 025293          147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (255)
Q Consensus       147 ~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G  212 (255)
                      .          ...++. +.++.+......+++.+++....... +.........+.++++.+++.   .+.++..||||
T Consensus        80 ~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG  158 (327)
T PRK11308         80 LKADPEAQKLLRQKIQI-VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG  158 (327)
T ss_pred             CcCCHHHHHHHhCCEEE-EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence            1          123555 55543222222234444333222221 222222234567888888885   36788999999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||++||++|+.+|++||+||||++||...+.++.++|.+.
T Consensus       159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l  200 (327)
T PRK11308        159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDL  200 (327)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=99.98  E-value=1.1e-32  Score=247.65  Aligned_cols=168  Identities=13%  Similarity=0.168  Sum_probs=129.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      +|+++||++.|++  +.  +++|+||+|.+||+++|+||||||||||||+|+|+++   |++|+ .+++...      ..
T Consensus         2 ~L~i~~l~~~~~~--~~--~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r   74 (353)
T PRK10851          2 SIEIANIKKSFGR--TQ--VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR   74 (353)
T ss_pred             EEEEEEEEEEeCC--eE--EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence            4899999999987  33  5699999999999999999999999999999999998   99999 4554321      12


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                      .+|+ +.++...+  +.+++.+++.+.....    +.........+.++++.+++.  .+.++..|||||+|||++|++|
T Consensus        75 ~i~~-v~Q~~~l~--p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL  151 (353)
T PRK10851         75 KVGF-VFQHYALF--RHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL  151 (353)
T ss_pred             CEEE-EecCcccC--CCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence            4565 44443222  2257777666543321    111111234567788888876  4678899999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+..+..+.++|.+.
T Consensus       152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l  182 (353)
T PRK10851        152 AVEPQILLLDEPFGALDAQVRKELRRWLRQL  182 (353)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988753

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=99.98  E-value=1.5e-32  Score=244.99  Aligned_cols=176  Identities=14%  Similarity=0.132  Sum_probs=130.9

Q ss_pred             CCeEEecCchheehhhh---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC
Q 025293           75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~---------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~  144 (255)
                      .++|+++||++.|+...         ....+++|+||+|++||++||+|+||||||||+++|+|+++   |++|+ .+++
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G   82 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG   82 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence            46899999999996311         11336699999999999999999999999999999999998   99998 4544


Q ss_pred             CCC-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--CCCCCccHHHHHHHHHhhccc---CCccCCC
Q 025293          145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPS  208 (255)
Q Consensus       145 ~~~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~l~~~---~~~~~~~  208 (255)
                      ...           ...+++ +.++.+......+++.+++.+.....  +.........+.++++.+++.   .+.++..
T Consensus        83 ~~i~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~  161 (331)
T PRK15079         83 KDLLGMKDDEWRAVRSDIQM-IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE  161 (331)
T ss_pred             EECCcCCHHHHHHHhCceEE-EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence            321           123555 55543211122246666555433222  122112233456788888884   4688899


Q ss_pred             CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||+||++||++|+.+|++||+||||++||+.++.++.++|.+.
T Consensus       162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  207 (331)
T PRK15079        162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL  207 (331)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998753

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=99.98  E-value=1.3e-32  Score=231.15  Aligned_cols=167  Identities=17%  Similarity=0.136  Sum_probs=123.6

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------  148 (255)
                      |+++|+++.|++. +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++... .       
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   74 (214)
T cd03292           1 IEFINVTKTYPNG-TA--ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP   74 (214)
T ss_pred             CEEEEEEEEeCCC-ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence            4689999999642 23  5599999999999999999999999999999999998   99998 4444311 1       


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                         ...++ +.++.. ++ ..+++.++..+.....+.........+.++++.+++.  .+.++..||+||+||+++|+++
T Consensus        75 ~~~~~i~~-v~q~~~-~~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  151 (214)
T cd03292          75 YLRRKIGV-VFQDFR-LL-PDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI  151 (214)
T ss_pred             HHHHheEE-EecCch-hc-cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence               12344 333322 11 1245666555443333322111223456777777775  3567789999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|+++|+||||++||+.+++.+.+++.+
T Consensus       152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~  181 (214)
T cd03292         152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK  181 (214)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=99.98  E-value=1.9e-32  Score=238.07  Aligned_cols=169  Identities=15%  Similarity=0.232  Sum_probs=125.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-----  147 (255)
                      +++|+++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++. +.     
T Consensus         5 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   77 (269)
T PRK11831          5 ANLVDMRGVSFTRGN--RC--IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS   77 (269)
T ss_pred             cceEEEeCeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence            458999999999976  33  4599999999999999999999999999999999998   99999 44442 11     


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                           ...+++ +.+... +. ..+++.+++.+..... ..........+..+++.+++.  .+.++..|||||+||+++
T Consensus        78 ~~~~~~~~i~~-v~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l  154 (269)
T PRK11831         78 RLYTVRKRMSM-LFQSGA-LF-TDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL  154 (269)
T ss_pred             hHHHHhhcEEE-Eecccc-cC-CCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence                 112444 333322 11 1245555554432211 111111122455677888775  356788999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|+.+|++||+||||++||+.++..+.+++.+
T Consensus       155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  188 (269)
T PRK11831        155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE  188 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999875

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=99.98  E-value=2.3e-32  Score=231.55  Aligned_cols=171  Identities=18%  Similarity=0.213  Sum_probs=122.9

Q ss_pred             eEEecCchheehhhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      +|+++||++.|++..  ..  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 ~l~~~~v~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   75 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVK--ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRR   75 (228)
T ss_pred             CeEEEeeeEeccCCCccee--eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchh
Confidence            478999999997521  13  5599999999999999999999999999999999998   99998 4444211      


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc-HHH-HHHHHHhhccc---CCccCCCCCcccccch
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~-~~~~l~~l~~~---~~~~~~~lS~G~kqrv  217 (255)
                           ....++ +.+.........+++.+++.+.....+...... ... ..++++.+++.   .+..+..||+||+||+
T Consensus        76 ~~~~~~~~i~~-~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv  154 (228)
T cd03257          76 LRKIRRKEIQM-VFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRV  154 (228)
T ss_pred             hHHHhhccEEE-EecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHH
Confidence                 112444 333321111112455555544322222111111 111 13677777773   3567889999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++++.+|++|||||||++||+.+++.+.+++.+
T Consensus       155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (228)
T cd03257         155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKK  190 (228)
T ss_pred             HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=99.98  E-value=1.7e-32  Score=249.53  Aligned_cols=170  Identities=16%  Similarity=0.192  Sum_probs=127.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-----  147 (255)
                      |++|+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++. ..     
T Consensus         1 ~~~L~~~nls~~y~~--~~--vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~   73 (402)
T PRK09536          1 MPMIDVSDLSVEFGD--TT--VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR   73 (402)
T ss_pred             CceEEEeeEEEEECC--EE--EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence            458999999999987  44  5599999999999999999999999999999999998   99999 44442 21     


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--CCC--CCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAP--WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~~~--~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                        ....|. +.+.....+  .+++.+++.+.+..+  .+.  .......+..+++.+++.  .++++..||+|||||++|
T Consensus        74 ~~~~~ig~-v~q~~~l~~--~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I  150 (402)
T PRK09536         74 AASRRVAS-VPQDTSLSF--EFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL  150 (402)
T ss_pred             HHhcceEE-EccCCCCCC--CCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence              123555 333322111  245555444322111  111  112234567788888876  367788999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|+.+|++|||||||++||+.++.+++++|.+.
T Consensus       151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l  185 (402)
T PRK09536        151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRRL  185 (402)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998764

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.98  E-value=2e-32  Score=228.67  Aligned_cols=164  Identities=19%  Similarity=0.208  Sum_probs=124.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      ||+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...       .
T Consensus         1 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~   73 (204)
T PRK13538          1 MLEARNLACERDE--RI--LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH   73 (204)
T ss_pred             CeEEEEEEEEECC--EE--EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence            5789999999986  33  5599999999999999999999999999999999998   99998 4444221       1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ...++ +.... .+ ...+++.++........+.   .....+.++++.+++.  .+.++..||+||+||+++|++++.+
T Consensus        74 ~~~~~-~~~~~-~~-~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~  147 (204)
T PRK13538         74 QDLLY-LGHQP-GI-KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR  147 (204)
T ss_pred             hheEE-eCCcc-cc-CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            12333 22221 11 1124555555443322221   2234566788888875  4677889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.++..+.++|.+
T Consensus       148 p~llllDEPt~~LD~~~~~~l~~~l~~  174 (204)
T PRK13538        148 APLWILDEPFTAIDKQGVARLEALLAQ  174 (204)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999875

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=99.98  E-value=1.5e-32  Score=229.35  Aligned_cols=164  Identities=12%  Similarity=0.028  Sum_probs=122.8

Q ss_pred             ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----------
Q 025293           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----------  147 (255)
Q Consensus        80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----------  147 (255)
                      ++||++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...           
T Consensus         1 i~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~   73 (206)
T TIGR03608         1 LKNISKKFGD--KI--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF   73 (206)
T ss_pred             CcceEEEECC--EE--EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence            4789999986  34  5599999999999999999999999999999999998   99998 4444321           


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       ....++ +..+. .++ ...++.++..+.....+.........+.++++.+++.  .+..+..||+||+||+++|++|+
T Consensus        74 ~~~~i~~-~~q~~-~~~-~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~  150 (206)
T TIGR03608        74 RREKLGY-LFQNF-ALI-ENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL  150 (206)
T ss_pred             HHhCeeE-Eecch-hhc-cCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence             112444 33322 111 1245555555433222222222234566788888774  35778899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+.+++.+.+++.+
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~  179 (206)
T TIGR03608       151 KDPPLILADEPTGSLDPKNRDEVLDLLLE  179 (206)
T ss_pred             cCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.6e-32  Score=242.35  Aligned_cols=172  Identities=12%  Similarity=0.131  Sum_probs=129.8

Q ss_pred             eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      +|+++||++.|++... ...+|+|+||+|.+||+++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK   78 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence            5899999999975211 0125699999999999999999999999999999999998   99999 4432110       


Q ss_pred             -------------------------CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc
Q 025293          148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  201 (255)
Q Consensus       148 -------------------------~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  201 (255)
                                               ...+|+ +.++. ..+..  .++.+++.+.....+.........+.++++.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~  155 (305)
T PRK13651         79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV-VFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD  155 (305)
T ss_pred             cccccccccccccccccccchHHHHHhceEE-EeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence                                     112455 44432 12221  36666665544444443323334567888888885


Q ss_pred             ---CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       202 ---~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                         .+.++..|||||+||+++|++|+.+|++||+||||++||+..+..+.++|.+.
T Consensus       156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l  211 (305)
T PRK13651        156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNL  211 (305)
T ss_pred             hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence               46788899999999999999999999999999999999999999999998753

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=99.98  E-value=1.7e-32  Score=234.74  Aligned_cols=167  Identities=14%  Similarity=0.121  Sum_probs=124.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      ++++||++.|++. +.  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (242)
T cd03295           1 IEFENVTKRYGGG-KK--AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVELR   74 (242)
T ss_pred             CEEEEEEEEeCCc-ce--EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHhh
Confidence            4689999999761 22  5699999999999999999999999999999999998   99999 4554321        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC----CccCCCCCcccccchhhhhhhc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      ..+++ +..+...+  ..+++.++..+.....+.........+.++++.+++..    +.++..||+||+||+++|++++
T Consensus        75 ~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~  151 (242)
T cd03295          75 RKIGY-VIQQIGLF--PHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA  151 (242)
T ss_pred             cceEE-EccCcccc--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence            12343 33332211  12466666554433322211112334567888888763    5677899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+.++..+.+++.+
T Consensus       152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~  180 (242)
T cd03295         152 ADPPLLLMDEPFGALDPITRDQLQEEFKR  180 (242)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998875

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=2.5e-32  Score=248.27  Aligned_cols=152  Identities=14%  Similarity=0.185  Sum_probs=118.0

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C-----------CCCeEEEEecCCCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K-----------PPDVATVLPMDGFHL  162 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~-----------~~~~g~~i~~~~~~~  162 (255)
                      +++|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++.. .           ....|+ +.+....+
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy-v~Q~~~l~  118 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAM-VFQSFALM  118 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEE-EECCCcCC
Confidence            5799999999999999999999999999999999998   99999 455421 1           124565 44332222


Q ss_pred             CCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCC
Q 025293          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD  240 (255)
                        ..+++.+++.+.....+.........+.++++.+++.  .+.++..|||||+||+++|++|+.+|++|||||||++||
T Consensus       119 --~~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD  196 (400)
T PRK10070        119 --PHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD  196 (400)
T ss_pred             --CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence              1257777776554443432222234567788888875  467788999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHh
Q 025293          241 GGVWKDVSSMFDE  253 (255)
Q Consensus       241 ~~~~~~l~~ll~~  253 (255)
                      +.++..+.++|.+
T Consensus       197 ~~~r~~l~~~L~~  209 (400)
T PRK10070        197 PLIRTEMQDELVK  209 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999865

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=99.98  E-value=1.6e-32  Score=230.12  Aligned_cols=166  Identities=18%  Similarity=0.153  Sum_probs=124.0

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (255)
                      |+++|+++.|++  +.  +++|+||+|++| +++|+||||||||||+++|+|+++   |++|+ .+++...       ..
T Consensus         1 i~~~~~~~~~~~--~~--~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   72 (211)
T cd03264           1 LQLENLTKRYGK--KR--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR   72 (211)
T ss_pred             CEEEEEEEEECC--EE--EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence            478999999976  33  559999999999 999999999999999999999998   99999 4444321       12


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      ..++ +.++...+  ..+++.++..+.....+.........+..+++.+++.  .+.++..||+||+||+++|++++.+|
T Consensus        73 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  149 (211)
T cd03264          73 RIGY-LPQEFGVY--PNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP  149 (211)
T ss_pred             heEE-ecCCCccc--ccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence            2343 33332211  1245556555433332322111233456778877775  35678899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|+||||++||+.+++.+.+++.+.
T Consensus       150 ~llllDEPt~~LD~~~~~~l~~~l~~~  176 (211)
T cd03264         150 SILIVDEPTAGLDPEERIRFRNLLSEL  176 (211)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999763

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=99.98  E-value=1.7e-32  Score=230.27  Aligned_cols=167  Identities=17%  Similarity=0.196  Sum_probs=123.2

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++  +.  +++++||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~--~~--~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03262           1 IEIKNLHKSFGD--FH--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE   73 (213)
T ss_pred             CEEEEEEEEECC--eE--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence            468999999986  34  5599999999999999999999999999999999998   99998 4444321         


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       ....++ +..+...+  ..+++.++..+... ..+.........+.++++.+++.  .+..+..||+||+||+++|+++
T Consensus        74 ~~~~i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  150 (213)
T cd03262          74 LRQKVGM-VFQQFNLF--PHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL  150 (213)
T ss_pred             HHhcceE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence             112344 33322111  12455555544321 11221111223456777777775  3677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+.+++.+.+++.+.
T Consensus       151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  181 (213)
T cd03262         151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDL  181 (213)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=99.98  E-value=2.4e-32  Score=228.65  Aligned_cols=162  Identities=19%  Similarity=0.232  Sum_probs=123.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------CC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------PD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------~~  150 (255)
                      |+++||++.|++  ++  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....      ..
T Consensus         1 l~~~~l~~~~~~--~~--~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (208)
T cd03268           1 LKTNDLTKTYGK--KR--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR   73 (208)
T ss_pred             CEEEEEEEEECC--eE--eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence            478999999976  34  5599999999999999999999999999999999998   99998 45443211      12


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .++ +..+.. +. ...++.+++.......+.    ....+..+++.+++.  .+.++..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  146 (208)
T cd03268          74 IGA-LIEAPG-FY-PNLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD  146 (208)
T ss_pred             EEE-ecCCCc-cC-ccCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence            443 333221 11 124555555443322221    234566777888775  356788999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.+++.+.+++.+
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~  171 (208)
T cd03268         147 LLILDEPTNGLDPDGIKELRELILS  171 (208)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998875

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=2.1e-32  Score=239.93  Aligned_cols=172  Identities=16%  Similarity=0.120  Sum_probs=127.6

Q ss_pred             eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      +|+++||++.|++... ...+++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK   78 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            6899999999974210 0125699999999999999999999999999999999998   99999 4544321       


Q ss_pred             -----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293          148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~  218 (255)
                           ...+|+ +..+.. .+.  ..++.+++.+.....+.........+.++++.+++.   .+.++..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~  155 (287)
T PRK13641         79 NLKKLRKKVSL-VFQFPEAQLF--ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA  155 (287)
T ss_pred             hHHHHHhceEE-EEeChhhhhc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence                 113455 333321 122  146666655433322222112223457788888875   36778999999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l  191 (287)
T PRK13641        156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDY  191 (287)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998753

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=1.8e-32  Score=240.66  Aligned_cols=171  Identities=14%  Similarity=0.078  Sum_probs=128.9

Q ss_pred             eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .|+++||++.|++... ...+|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK   78 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999974210 0125699999999999999999999999999999999998   99999 4554321       


Q ss_pred             -----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293          148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~  218 (255)
                           ...+|+ +.++.. .+..  .++.+++.+.....+.........+.++++.+++.   .+.++..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~  155 (290)
T PRK13634         79 KLKPLRKKVGI-VFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA  155 (290)
T ss_pred             hHHHHHhhEEE-EeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence                 123555 444321 1221  36666665544443332222223457788888885   36778999999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++|+.+|++||+||||++||+..+..+.+++.+
T Consensus       156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~  190 (290)
T PRK13634        156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK  190 (290)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998865

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.3e-32  Score=227.57  Aligned_cols=171  Identities=16%  Similarity=0.215  Sum_probs=129.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      +|++++||+..||..+    +|++|||++++||+++|+|+||+|||||||+|+|+.+   +.+|+ .+++....      
T Consensus         2 ~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~~   74 (237)
T COG0410           2 PMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPHE   74 (237)
T ss_pred             CceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHHH
Confidence            5899999999999844    7799999999999999999999999999999999998   88999 55554321      


Q ss_pred             -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC--CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhcc
Q 025293          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                       ...|..+.-.+..++ +.+++.+|+........-  ......+.+.+++-++....+.....|||||+|-++|||||+.
T Consensus        75 r~r~Gi~~VPegR~iF-~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~  153 (237)
T COG0410          75 RARLGIAYVPEGRRIF-PRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMS  153 (237)
T ss_pred             HHhCCeEeCcccccch-hhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhc
Confidence             123322222333333 237888877654332211  1111134455555555555778889999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|+||||+.||-|...+++.+.|.+.
T Consensus       154 ~PklLLLDEPs~GLaP~iv~~I~~~i~~l  182 (237)
T COG0410         154 RPKLLLLDEPSEGLAPKIVEEIFEAIKEL  182 (237)
T ss_pred             CCCEEEecCCccCcCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988754

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.7e-32  Score=234.73  Aligned_cols=167  Identities=19%  Similarity=0.215  Sum_probs=122.3

Q ss_pred             eEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ||+++||++.|+ +  +.  +++|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         1 ~l~~~~l~~~~~~~--~~--il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR02315         1 MLEVENLSKVYPNG--KQ--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK   73 (243)
T ss_pred             CeEEEeeeeecCCC--cc--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence            478999999997 4  33  5599999999999999999999999999999999998   99999 4444221       


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhcccC--CccCCCCCccc
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGV  213 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~  213 (255)
                          ....++ +......+.  .+++.+++.+....        .+.........+.++++.+++..  +.++..||+||
T Consensus        74 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  150 (243)
T TIGR02315        74 LRKLRRRIGM-IFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ  150 (243)
T ss_pred             HHHHHhheEE-EcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence                112444 333322111  13444444321100        01111112234567788877753  56788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus       151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  190 (243)
T TIGR02315       151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR  190 (243)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999865

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.8e-32  Score=238.44  Aligned_cols=168  Identities=19%  Similarity=0.177  Sum_probs=122.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ||+++||++.|++  +.  +++|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ml~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   73 (271)
T PRK13638          1 MLATSDLWFRYQD--EP--VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL   73 (271)
T ss_pred             CeEEEEEEEEcCC--cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence            5889999999986  33  5599999999999999999999999999999999998   99999 45443211       


Q ss_pred             ---CCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ..+++ +.++.. ....  .++.++..+.....+.........+..+++.+++.  .+.++..|||||+||+++|++
T Consensus        74 ~~~~~i~~-v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara  150 (271)
T PRK13638         74 ALRQQVAT-VFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA  150 (271)
T ss_pred             HHHhheEE-EeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence               12444 333321 1111  13333433322222221111123345677777764  356788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+.++..+.++|.+.
T Consensus       151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  182 (271)
T PRK13638        151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRRI  182 (271)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.1e-32  Score=239.99  Aligned_cols=172  Identities=15%  Similarity=0.121  Sum_probs=129.3

Q ss_pred             eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ||+++||++.|+.... ...+|+|+||+|.+||+++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   77 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK   77 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            5899999999974211 0125699999999999999999999999999999999998   99999 5554321       


Q ss_pred             -----CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293          148 -----PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~  218 (255)
                           ...+|+ +.++. ..+..  .++.+++.+.....+.+.......+.++++.+++.   .+..+..||+||+||++
T Consensus        78 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva  154 (288)
T PRK13643         78 EIKPVRKKVGV-VFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA  154 (288)
T ss_pred             cHHHHHhhEEE-EecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence                 113455 44432 12221  36666666554444433222233456778888874   36778899999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|+.+|++|||||||++||+.++..+.+++.+.
T Consensus       155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l  190 (288)
T PRK13643        155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESI  190 (288)
T ss_pred             HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998653

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=2.9e-32  Score=228.22  Aligned_cols=163  Identities=17%  Similarity=0.125  Sum_probs=122.8

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----CC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PD  150 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----~~  150 (255)
                      +|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+.+   |++|+ .+++....     ..
T Consensus         2 ~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (207)
T PRK13539          2 MLEGEDLACVRGG--RV--LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA   74 (207)
T ss_pred             EEEEEeEEEEECC--eE--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence            6899999999986  33  5699999999999999999999999999999999998   99998 45443211     12


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .++ +..... + ....++.++..+.....+    .....+.++++.+++..  +.++..||+||+||+++|++++.+|+
T Consensus        75 ~~~-~~~~~~-~-~~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  147 (207)
T PRK13539         75 CHY-LGHRNA-M-KPALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP  147 (207)
T ss_pred             cEE-ecCCCc-C-CCCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            333 221111 1 112355554443322211    12234667888887753  56778999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.++..+.++|.+
T Consensus       148 llllDEPt~~LD~~~~~~l~~~l~~  172 (207)
T PRK13539        148 IWILDEPTAALDAAAVALFAELIRA  172 (207)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.6e-32  Score=233.39  Aligned_cols=169  Identities=18%  Similarity=0.247  Sum_probs=124.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+++++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 ~~~l~~~~l~~~~~~--~~--~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   73 (241)
T PRK10895          1 MATLTAKNLAKAYKG--RR--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH   73 (241)
T ss_pred             CceEEEeCcEEEeCC--EE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            457999999999986  34  5599999999999999999999999999999999998   99998 4444211      


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~  221 (255)
                         ...+++ +..... +. ..+++.++......... .........+.++++.+++..  +.++..||+||+||+++|+
T Consensus        74 ~~~~~~i~~-~~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (241)
T PRK10895         74 ARARRGIGY-LPQEAS-IF-RRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR  150 (241)
T ss_pred             HHHHhCeEE-eccCCc-cc-ccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence               112343 333321 11 11355555443221111 111112234567777777653  5677899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|++||+||||++||+.++..+.+++.+
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (241)
T PRK10895        151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEH  182 (241)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988865

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.5e-32  Score=237.40  Aligned_cols=170  Identities=15%  Similarity=0.139  Sum_probs=127.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      |.+++++||++.|++. +.  +++|+||+|++||++||+|+||||||||+++|+|+++   |++|+ .+++... .    
T Consensus         1 ~~~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (277)
T PRK13652          1 MHLIETRDLCYSYSGS-KE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR   74 (277)
T ss_pred             CceEEEEEEEEEeCCC-Cc--eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            4689999999999642 23  5699999999999999999999999999999999998   99999 4544321 1    


Q ss_pred             ---CCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ..+|+ +..+.. .+.  ..++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        75 ~~~~~i~~-v~q~~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara  151 (277)
T PRK13652         75 EVRKFVGL-VFQNPDDQIF--SPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV  151 (277)
T ss_pred             HHHhheEE-EecCcccccc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence               12454 333321 111  135555554433322222111223456778877775  467788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+.++..+.+++.+
T Consensus       152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~  182 (277)
T PRK13652        152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLND  182 (277)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.2e-32  Score=238.27  Aligned_cols=170  Identities=17%  Similarity=0.160  Sum_probs=127.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||++.|++. +.  +++|+||+|++||++||+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         3 ~~l~~~~l~~~~~~~-~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   76 (274)
T PRK13647          3 NIIEVEDLHFRYKDG-TK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW   76 (274)
T ss_pred             ceEEEEEEEEEeCCC-Ce--eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence            379999999999631 23  5699999999999999999999999999999999998   99999 4444321       


Q ss_pred             -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       ...+|+ +.++.. .+.  ..++.+++.+.....+.........+..+++.+++.  .+.++..|||||+||+++|++|
T Consensus        77 ~~~~i~~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL  153 (274)
T PRK13647         77 VRSKVGL-VFQDPDDQVF--SSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL  153 (274)
T ss_pred             HHhhEEE-EecChhhhhc--cCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence             123455 444321 111  136666655433322222111223456777877775  4677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+.++..+.+++.+.
T Consensus       154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  184 (274)
T PRK13647        154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRL  184 (274)
T ss_pred             HcCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=99.97  E-value=2.5e-32  Score=232.73  Aligned_cols=166  Identities=19%  Similarity=0.178  Sum_probs=123.3

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------  148 (255)
                      |+++||++.|++  +.  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++... .       
T Consensus         1 l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (236)
T cd03219           1 LEVRGLTKRFGG--LV--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA   73 (236)
T ss_pred             CeeeeeEEEECC--EE--EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence            468999999976  33  5599999999999999999999999999999999998   99998 4444221 1       


Q ss_pred             -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC----------CCccHHHHHHHHHhhcccC--CccCCCCCccccc
Q 025293          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD  215 (255)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kq  215 (255)
                       ...++ +.+... ++ ..+++.+++.+........          .......+.++++.+++..  +.++..||+||+|
T Consensus        74 ~~~i~~-v~q~~~-l~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  150 (236)
T cd03219          74 RLGIGR-TFQIPR-LF-PELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR  150 (236)
T ss_pred             hcCEEE-Eecccc-cc-cCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence             12444 333322 11 1246666554433222111          0111234567788887753  5677899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++|+.+|+++|+||||++||+.++..+.+++.+
T Consensus       151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  188 (236)
T cd03219         151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE  188 (236)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=99.97  E-value=3e-32  Score=230.99  Aligned_cols=166  Identities=16%  Similarity=0.127  Sum_probs=124.0

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCCc-cCCCCCC----
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll-----~~~~p~~G~-~~~~~~~----  147 (255)
                      |+++||++.|++  +.  +++|+||+|.+||+++|+||||||||||+++|+|++     +   |++|+ .+++...    
T Consensus         1 i~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~   73 (227)
T cd03260           1 IELRDLNVYYGD--KH--ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD   73 (227)
T ss_pred             CEEEEEEEEcCC--ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence            478999999986  33  559999999999999999999999999999999999     8   99999 4544321    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhcccC--Ccc--CCCCCcccccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDP  216 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~~--~~~--~~~lS~G~kqr  216 (255)
                            ...+++ +.++.. +.  .+++.+++.+.....+.... .....+.++++.+++..  +..  +..||+||+||
T Consensus        74 ~~~~~~~~~i~~-~~q~~~-~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr  149 (227)
T cd03260          74 VDVLELRRRVGM-VFQKPN-PF--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR  149 (227)
T ss_pred             hHHHHHHhhEEE-EecCch-hc--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence                  112444 333322 22  24666665543332222111 12234567788887753  333  48999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  187 (227)
T cd03260         150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL  187 (227)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998763

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-32  Score=229.38  Aligned_cols=171  Identities=20%  Similarity=0.252  Sum_probs=132.6

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC---C--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---P--  149 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~---~--  149 (255)
                      +++++++|+|+||+..    +++||||++++||++|||||||||||||+|+|+|+++   |++|+ ++.+....   +  
T Consensus         3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~   75 (250)
T COG0411           3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR   75 (250)
T ss_pred             ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence            5789999999999954    7899999999999999999999999999999999999   99999 56554321   1  


Q ss_pred             --CeEEEEecCCCCCCCccCCcccChHHHHHhc-------CCC-----CCccHHHHHHHHHhhccc--CCccCCCCCccc
Q 025293          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (255)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~-----~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~  213 (255)
                        ..|..-.++.-.+ ...+++.+|+.......       +.+     .....+..+++++.+++.  .+.....||+|+
T Consensus        76 iar~Gi~RTFQ~~rl-F~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~  154 (250)
T COG0411          76 IARLGIARTFQITRL-FPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ  154 (250)
T ss_pred             HHhccceeecccccc-cCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence              2332222222222 23478888876643311       111     112234567889999887  456778999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.||+||+.+|++|+||||.+|+.+....++.++|.+.
T Consensus       155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i  195 (250)
T COG0411         155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIREL  195 (250)
T ss_pred             hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998764

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=99.97  E-value=3.9e-32  Score=232.14  Aligned_cols=167  Identities=19%  Similarity=0.185  Sum_probs=121.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------  148 (255)
                      |+++||++.|++. +.  +++|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++... .       
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   74 (241)
T cd03256           1 IEVENLSKTYPNG-KK--ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKALR   74 (241)
T ss_pred             CEEeeEEEecCCc-cE--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHHH
Confidence            4689999999751 22  5699999999999999999999999999999999998   99998 4544321 1       


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccc--CCccCCCCCccccc
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kq  215 (255)
                         ...++ +.++...+  ..+++.+++......        .+.........+.++++.+++.  .+.++..||+||+|
T Consensus        75 ~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~q  151 (241)
T cd03256          75 QLRRQIGM-IFQQFNLI--ERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQ  151 (241)
T ss_pred             HHHhccEE-EcccCccc--ccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHH
Confidence               12343 33332211  124555544332110        1111112233456778887775  35678899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       152 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  189 (241)
T cd03256         152 RVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR  189 (241)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=99.97  E-value=2.3e-32  Score=241.27  Aligned_cols=160  Identities=15%  Similarity=0.150  Sum_probs=121.2

Q ss_pred             heehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CCCeEEEEe
Q 025293           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLP  156 (255)
Q Consensus        85 k~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~  156 (255)
                      |.|++  +.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...       ...+|+ +.
T Consensus         1 k~y~~--~~--~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~   72 (302)
T TIGR01188         1 KVYGD--FK--AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VP   72 (302)
T ss_pred             CeeCC--ee--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ec
Confidence            46765  33  5699999999999999999999999999999999998   99999 4444221       123555 33


Q ss_pred             cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      +... ++ ..+++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|++|+.+|++|||||
T Consensus        73 q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  150 (302)
T TIGR01188        73 QYAS-VD-EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE  150 (302)
T ss_pred             CCCC-CC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            3322 11 2256667666544444432222233467788888875  467788999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHhh
Q 025293          235 NYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++||+.++..+++++.+.
T Consensus       151 Pt~gLD~~~~~~l~~~l~~~  170 (302)
T TIGR01188       151 PTTGLDPRTRRAIWDYIRAL  170 (302)
T ss_pred             CCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999998753

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.1e-32  Score=241.72  Aligned_cols=179  Identities=12%  Similarity=0.121  Sum_probs=126.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-CCCCCc-cCCCC-CC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQ-VK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~-~p~~G~-~~~~~-~~----  147 (255)
                      |++|+++||++.|........+++|+||+|.+||++||+|+||||||||+++|+|+++.. .|++|+ .+++. +.    
T Consensus         1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            468999999999953111122669999999999999999999999999999999998410 137888 45442 11    


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-----C-CccHHHHHHHHHhhcccC-----CccCCCC
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-----W-TFNPLLLLNCLKNLRNQG-----SVYAPSF  209 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~l~~l~~~~-----~~~~~~l  209 (255)
                             ...+++ +.++........+++.+++..........     . ......+.++++.+++..     +.++..|
T Consensus        81 ~~~~~~~~~~i~~-v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L  159 (330)
T PRK15093         81 RERRKLVGHNVSM-IFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL  159 (330)
T ss_pred             HHHHHHhCCCEEE-EecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence                   113555 45443321222234444443221111000     0 112245678899998863     5778899


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||+|||+||++|+.+|++||+||||++||+..+.++.++|.+.
T Consensus       160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  204 (330)
T PRK15093        160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRL  204 (330)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999763

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.9e-32  Score=232.57  Aligned_cols=167  Identities=16%  Similarity=0.142  Sum_probs=124.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCCC--
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVKP--  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~~--  148 (255)
                      +|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |+     +|+ .+++....  
T Consensus         1 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~   73 (247)
T TIGR00972         1 AIEIENLNLFYGE--KE--ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK   73 (247)
T ss_pred             CEEEEEEEEEECC--ee--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence            4789999999986  33  5599999999999999999999999999999999997   88     898 44443211  


Q ss_pred             --------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       149 --------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~  213 (255)
                              ..+++ +.++.. .. . .++.++..+.....+. ...........+++.+++.      .+.++..||+||
T Consensus        74 ~~~~~~~~~~i~~-v~q~~~-~~-~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~  149 (247)
T TIGR00972        74 KIDVVELRRRVGM-VFQKPN-PF-P-MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ  149 (247)
T ss_pred             ccchHHHHhheEE-EecCcc-cC-C-CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence                    12444 333321 11 1 3555555443322221 1111223456778888775      356788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus       150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  190 (247)
T TIGR00972       150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL  190 (247)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.9e-32  Score=237.29  Aligned_cols=171  Identities=13%  Similarity=0.141  Sum_probs=128.5

Q ss_pred             CeEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      .+|+++||++.|++.. +.  +|+|+||+|++||++||+|+||||||||+++|+|+++   |++|+ .+++....     
T Consensus         3 ~~l~~~~l~~~~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   77 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQEKY--TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVW   77 (279)
T ss_pred             ceEEEEeEEEEcCCCCcCe--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHH
Confidence            3799999999997421 22  5699999999999999999999999999999999998   99999 45543211     


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                         ..+|+ +.++...... ..++.+++.+.....++........+.++++.+++.  .+..+..||+||+||+++|++|
T Consensus        78 ~~~~~i~~-v~q~~~~~~~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral  155 (279)
T PRK13650         78 DIRHKIGM-VFQNPDNQFV-GATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV  155 (279)
T ss_pred             HHHhhceE-EEcChHHhcc-cccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence               13454 4443211111 135666665443333332222234467788888876  3677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+.++..+.+++.+
T Consensus       156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  185 (279)
T PRK13650        156 AMRPKIIILDEATSMLDPEGRLELIKTIKG  185 (279)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998865

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=99.97  E-value=7e-32  Score=240.62  Aligned_cols=177  Identities=15%  Similarity=0.181  Sum_probs=128.3

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCc-cCCCCCC-C
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-P  148 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~---~G~-~~~~~~~-~  148 (255)
                      .+++|+++||++.|+.....+.+++|+||+|++||++||+|+||||||||+++|+|+++   |+   +|+ .+++... .
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~   85 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN   85 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence            45689999999999632112336699999999999999999999999999999999997   75   888 4554321 1


Q ss_pred             -----------CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhcccC-----CccCCCCCc
Q 025293          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH  211 (255)
Q Consensus       149 -----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~  211 (255)
                                 ..+++ +.++.+....+.+++.+++.+..... +.........+.++++.+++..     +.++..|||
T Consensus        86 ~~~~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg  164 (330)
T PRK09473         86 LPEKELNKLRAEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG  164 (330)
T ss_pred             CCHHHHHHHhcCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence                       23555 55553222222244444333322222 1111112234567788887752     457889999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||++||++|+.+|++||+||||++||..++..+.++|.+.
T Consensus       165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l  207 (330)
T PRK09473        165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL  207 (330)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988753

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.6e-32  Score=236.86  Aligned_cols=171  Identities=16%  Similarity=0.150  Sum_probs=127.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||++.|++..+.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         4 ~~l~~~~l~~~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13635          4 EIIRVEHISFRYPDAATY--ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD   78 (279)
T ss_pred             ceEEEEEEEEEeCCCCcc--ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            479999999999742223  5699999999999999999999999999999999998   99999 4555321       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       ...+|+ +.++..... ...++.+++.+.....+.........+..+++.+++.  .+..+..||+||+||+++|++|+
T Consensus        79 ~~~~i~~-~~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~  156 (279)
T PRK13635         79 VRRQVGM-VFQNPDNQF-VGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLA  156 (279)
T ss_pred             HhhheEE-EEeCHHHhc-ccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence             113454 333321111 1135656555433333322211223456777777775  45678899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+.++..+.++|.+
T Consensus       157 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~  185 (279)
T PRK13635        157 LQPDIIILDEATSMLDPRGRREVLETVRQ  185 (279)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=99.97  E-value=5e-32  Score=231.54  Aligned_cols=167  Identities=16%  Similarity=0.199  Sum_probs=124.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ||+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++....       
T Consensus         1 ~l~~~~l~~~~~~--~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (240)
T PRK09493          1 MIEFKNVSKHFGP--TQ--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER   73 (240)
T ss_pred             CEEEEeEEEEECC--eE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence            4789999999986  34  5599999999999999999999999999999999998   99998 45442211       


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ...++ +..+...+  ..+++.++..+... ..+.........+.++++.+++.  .+.++..||+||+||+++|++
T Consensus        74 ~~~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a  150 (240)
T PRK09493         74 LIRQEAGM-VFQQFYLF--PHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA  150 (240)
T ss_pred             HHhhceEE-EecccccC--CCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence               12444 33332211  12455555543221 11221111223456778888775  356778999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|+++|+||||++||+.++..+.+++.+
T Consensus       151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~  181 (240)
T PRK09493        151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQD  181 (240)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.5e-32  Score=237.00  Aligned_cols=168  Identities=15%  Similarity=0.097  Sum_probs=124.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++||++.|++. ++  +|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 ml~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   74 (274)
T PRK13644          1 MIRLENVSYSYPDG-TP--ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG   74 (274)
T ss_pred             CEEEEEEEEEcCCC-Cc--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence            47899999999531 23  5599999999999999999999999999999999998   99998 4444221        


Q ss_pred             -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       ...+|+ +..+.. .+.  ..++.+++.+.....+.........+..+++.+++.  .+.++..||+||+||+++|++|
T Consensus        75 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral  151 (274)
T PRK13644         75 IRKLVGI-VFQNPETQFV--GRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL  151 (274)
T ss_pred             HHhheEE-EEEChhhhcc--cchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence             112444 333321 111  135555554433332222111223456677777775  3577889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+.++..+.+++.+
T Consensus       152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  181 (274)
T PRK13644        152 TMEPECLIFDEVTSMLDPDSGIAVLERIKK  181 (274)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999865

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.97  E-value=4.5e-32  Score=229.00  Aligned_cols=165  Identities=18%  Similarity=0.206  Sum_probs=120.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC--------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK--------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~--------  147 (255)
                      |+++||++.|++  +.  +++|+||+|.+|+++||+||||||||||+++|+|+++   |++|+ .+++. ..        
T Consensus         1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (222)
T cd03224           1 LEVENLNAGYGK--SQ--ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA   73 (222)
T ss_pred             CEEeeEEeecCC--ee--EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence            478999999986  33  5599999999999999999999999999999999998   99998 44442 11        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhh-ccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      ...+++ +..+.. +. ..+++.++..+.....+  ..........+++.+ ++.  .+.++..||+||+||+++|++++
T Consensus        74 ~~~i~~-~~q~~~-~~-~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~  148 (222)
T cd03224          74 RAGIGY-VPEGRR-IF-PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM  148 (222)
T ss_pred             hcCeEE-eccccc-cC-CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence            112444 333221 11 12455555544322221  111122334555555 232  46778899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||+||||++||+.++..+.+++.+.
T Consensus       149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~  178 (222)
T cd03224         149 SRPKLLLLDEPSEGLAPKIVEEIFEAIREL  178 (222)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998753

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.97  E-value=3.4e-32  Score=234.88  Aligned_cols=163  Identities=13%  Similarity=0.091  Sum_probs=124.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCC
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD  150 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~  150 (255)
                      .++|+++||++.|++  +.  +|+|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++...   ...
T Consensus        10 ~~~l~i~~l~~~~~~--~~--il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~   82 (257)
T PRK11247         10 GTPLLLNAVSKRYGE--RT--VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEARED   82 (257)
T ss_pred             CCcEEEEEEEEEECC--cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCc
Confidence            367999999999986  33  5599999999999999999999999999999999998   99998 4444221   223


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .++ +.+....+  ...++.+++.+.     ... .....+.++++.+++..  +.++..|||||+||+++|++|+.+|+
T Consensus        83 i~~-v~q~~~l~--~~~tv~enl~~~-----~~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~  153 (257)
T PRK11247         83 TRL-MFQDARLL--PWKKVIDNVGLG-----LKG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPG  153 (257)
T ss_pred             eEE-EecCccCC--CCCcHHHHHHhc-----ccc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            454 33332211  113444443321     111 11234567788888753  56788999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+||||++||+.++..+.++|.+
T Consensus       154 lllLDEPt~~LD~~~~~~l~~~L~~  178 (257)
T PRK11247        154 LLLLDEPLGALDALTRIEMQDLIES  178 (257)
T ss_pred             EEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999998865

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.97  E-value=6.7e-32  Score=234.42  Aligned_cols=174  Identities=16%  Similarity=0.156  Sum_probs=123.1

Q ss_pred             CeEEecCchheehhhh-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCC
Q 025293           76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKP  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~-----~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~  148 (255)
                      ++|+++||+++|+...     ....+++|+||+|++|++++|+|||||||||||++|+|+++   |++|+ .+++. +..
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~   79 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF   79 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence            4799999999996310     01125699999999999999999999999999999999998   99998 44442 111


Q ss_pred             -------CCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccch
Q 025293          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       149 -------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv  217 (255)
                             ..+++ +..+........+++.++..+.... ...........+.++++.+++.   .+.++..||+||+||+
T Consensus        80 ~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv  158 (267)
T PRK15112         80 GDYSYRSQRIRM-IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL  158 (267)
T ss_pred             CchhhHhccEEE-EecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence                   12444 3333211111112333333222211 1121111223456788888873   3556789999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++|+.+|++|||||||++||+.+++.+.++|.+
T Consensus       159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  194 (267)
T PRK15112        159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLE  194 (267)
T ss_pred             HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998875

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.8e-32  Score=236.67  Aligned_cols=170  Identities=17%  Similarity=0.155  Sum_probs=128.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||++.|++. +.  +++|+||+|++||++||+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         4 ~~l~~~~l~~~~~~~-~~--~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~   77 (283)
T PRK13636          4 YILKVEELNYNYSDG-TH--ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL   77 (283)
T ss_pred             ceEEEEeEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence            479999999999631 23  5599999999999999999999999999999999998   99999 4444321       


Q ss_pred             ---CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ---~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                         ...+|+ +..+. ....  ..++.+++.+.....+++.......+..+++.+++.  .+.++..||+||+||+++|+
T Consensus        78 ~~~~~~ig~-v~q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar  154 (283)
T PRK13636         78 MKLRESVGM-VFQDPDNQLF--SASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG  154 (283)
T ss_pred             HHHHhhEEE-EecCcchhhc--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence               123455 44432 1111  135656555433333332222223456777888875  46778899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|+.+|++||+||||++||+.++..+.+++.+.
T Consensus       155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l  187 (283)
T PRK13636        155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEM  187 (283)
T ss_pred             HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988653

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6.3e-32  Score=231.19  Aligned_cols=167  Identities=17%  Similarity=0.175  Sum_probs=123.8

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +|+++|+++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+.+   |++|+ .+++...        
T Consensus         2 ~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (242)
T PRK11124          2 SIQLNGINCFYGA--HQ--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             EEEEEeeEEEECC--ee--eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence            6899999999986  34  5599999999999999999999999999999999998   99998 4544321        


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchh
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~  218 (255)
                            ...+++ +..+.. ++ ..+++.+++... ....+.........+.++++.+++.  .+..+..||+||+||++
T Consensus        75 ~~~~~~~~~i~~-~~q~~~-~~-~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  151 (242)
T PRK11124         75 KAIRELRRNVGM-VFQQYN-LW-PHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA  151 (242)
T ss_pred             hhHHHHHhheEE-EecCcc-cc-CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence                  112344 333222 11 124555554321 1122222111223456777777775  35677899999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++++.+|+++|+||||++||+.++..+.+++.+
T Consensus       152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~  186 (242)
T PRK11124        152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE  186 (242)
T ss_pred             HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9.2e-32  Score=231.25  Aligned_cols=170  Identities=18%  Similarity=0.095  Sum_probs=125.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      |++|+++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus         1 ~~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~   73 (250)
T PRK14247          1 MNKIEIRDLKVSFGQ--VE--VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE---LYPEARVSGEVYLDGQDIF   73 (250)
T ss_pred             CceEEEEeeEEEECC--ee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCCCCceEEEECCEECC
Confidence            467999999999986  33  5599999999999999999999999999999999985   4     5898 4444211 


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC--CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                             ...+|+ +.++...+  ..+++.++..+.........  ......+.++++.+++.      .+..+..||+|
T Consensus        74 ~~~~~~~~~~i~~-v~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  150 (250)
T PRK14247         74 KMDVIELRRRVQM-VFQIPNPI--PNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGG  150 (250)
T ss_pred             cCCHHHHhccEEE-EeccCccC--CCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHH
Confidence                   123454 34332211  12466666654332222111  11123456778877763      35678899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus       151 ~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14247        151 QQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLEL  192 (250)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998763

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.97  E-value=1.1e-31  Score=231.84  Aligned_cols=170  Identities=15%  Similarity=0.178  Sum_probs=123.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------CC
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------KP  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------~~  148 (255)
                      ++|+++||++.|++  +.  +++|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++..      ..
T Consensus         5 ~~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~   77 (258)
T PRK11701          5 PLLSVRGLTKLYGP--RK--GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA   77 (258)
T ss_pred             ceEEEeeeEEEcCC--ce--eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence            47999999999976  33  5599999999999999999999999999999999998   99999 444432      11


Q ss_pred             -----------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       149 -----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~  213 (255)
                                 ...++ +..+........++..+++.+.....+.. .......+.++++.+++.   .+..+..||+||
T Consensus        78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq  156 (258)
T PRK11701         78 LSEAERRRLLRTEWGF-VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM  156 (258)
T ss_pred             CCHHHHHHHhhcceEE-EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence                       12444 33332111111123333332211111111 011123456778888874   257788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++|+.+|++||+||||++||+.++..+.+++.+
T Consensus       157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  196 (258)
T PRK11701        157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRG  196 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.97  E-value=7.5e-32  Score=232.99  Aligned_cols=167  Identities=17%  Similarity=0.205  Sum_probs=123.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +|+++||++.|++  +.  +|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...        
T Consensus         2 ~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (258)
T PRK13548          2 MLEARNLSVRLGG--RT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL   74 (258)
T ss_pred             eEEEEeEEEEeCC--ee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence            6899999999986  33  5599999999999999999999999999999999998   99999 4444211        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc-
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG-  224 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~-  224 (255)
                      ....++ +..+.....  .+++.+++.+.....+.........+..+++.+++.  .+..+..||+||+||+++|++|+ 
T Consensus        75 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~  151 (258)
T PRK13548         75 ARRRAV-LPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ  151 (258)
T ss_pred             hhheEE-EccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            112344 333322111  135544443322111111111223456778877775  36778899999999999999999 


Q ss_pred             -----cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 -----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 -----~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                           .+|++||+||||++||+.++..+.++|.+
T Consensus       152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (258)
T PRK13548        152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ  185 (258)
T ss_pred             ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                 59999999999999999999999998875

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.97  E-value=1.1e-31  Score=232.86  Aligned_cols=171  Identities=16%  Similarity=0.149  Sum_probs=125.9

Q ss_pred             eEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-
Q 025293           77 VVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-  147 (255)
                      +|+++||++.|++.       .+.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++... 
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~   76 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAP--VLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLY   76 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceE--EeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcc
Confidence            68999999999631       123  5699999999999999999999999999999999998   99999 4554221 


Q ss_pred             ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~  213 (255)
                                ...+++ +.++........+++.+++.+..... .+........+.++++.+++.   .+.++..||+||
T Consensus        77 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe  155 (265)
T TIGR02769        77 QLDRKQRRAFRRDVQL-VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQ  155 (265)
T ss_pred             ccCHHHHHHHhhceEE-EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHH
Confidence                      112454 44432111111245555544332221 222222234567788888874   357788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++|+.+|++||+||||++||+..+..+.++|.+
T Consensus       156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~  195 (265)
T TIGR02769       156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK  195 (265)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.1e-31  Score=238.43  Aligned_cols=176  Identities=14%  Similarity=0.095  Sum_probs=128.4

Q ss_pred             ccCCCeEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--
Q 025293           72 RREIPVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--  147 (255)
Q Consensus        72 ~~~~~~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--  147 (255)
                      ..+.++|+++||++.|++... ...+|+|+||+|++|+++||+|+||||||||+++|+|+++   |++|+ .+++...  
T Consensus        16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~   92 (320)
T PRK13631         16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGD   92 (320)
T ss_pred             CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEccc
Confidence            344578999999999974210 1125699999999999999999999999999999999998   99999 4443110  


Q ss_pred             ----------------------CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---
Q 025293          148 ----------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---  201 (255)
Q Consensus       148 ----------------------~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---  201 (255)
                                            ...+|. +.++. ..+..  .++.+++.+.....+.........+.++++.+++.   
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~  169 (320)
T PRK13631         93 KKNNHELITNPYSKKIKNFKELRRRVSM-VFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSY  169 (320)
T ss_pred             ccccccccccccccccchHHHHHhcEEE-EEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhH
Confidence                                  112455 34332 12221  25555554433222222111223456778888874   


Q ss_pred             CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       202 ~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+..+..|||||+||++||++|+.+|++||+||||++||+.++..+.++|.+
T Consensus       170 ~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~  221 (320)
T PRK13631        170 LERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD  221 (320)
T ss_pred             hcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999865

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.97  E-value=1.9e-31  Score=225.97  Aligned_cols=165  Identities=16%  Similarity=0.183  Sum_probs=124.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~------  147 (255)
                      ++|+++||++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++.. .      
T Consensus         6 ~~i~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   78 (225)
T PRK10247          6 PLLQLQNVGYLAGD--AK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI   78 (225)
T ss_pred             ceEEEeccEEeeCC--ce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence            47999999999986  33  5599999999999999999999999999999999998   99999 444421 1      


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhh
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       ....++ +..+.. ++.  .++.++..+.....+  .......+.++++.+++.   .+.++..||+||+||+++|++|
T Consensus        79 ~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  152 (225)
T PRK10247         79 YRQQVSY-CAQTPT-LFG--DTVYDNLIFPWQIRN--QQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL  152 (225)
T ss_pred             HHhccEE-Eecccc-ccc--ccHHHHHHhHHhhcC--CChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence             112344 333322 221  255555443222111  111223456788888874   3677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|+++|+||||++||+.++..+.+++.+
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (225)
T PRK10247        153 QFMPKVLLLDEITSALDESNKHNVNEIIHR  182 (225)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998875

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.97  E-value=1.3e-31  Score=226.69  Aligned_cols=171  Identities=19%  Similarity=0.203  Sum_probs=123.7

Q ss_pred             eEEecCchheehhh---hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCC--C---CCC
Q 025293           77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--S---QVK  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~---~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~--~---~~~  147 (255)
                      ||+++||++.|+..   .+...+++|+||+|.+||+++|+|+||||||||+++|+|+++   |++|+ .++  +   +..
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~   77 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA   77 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence            47899999999631   011225699999999999999999999999999999999998   99999 443  2   111


Q ss_pred             -----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCccc
Q 025293          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (255)
Q Consensus       148 -----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~  213 (255)
                                 ....++ +.++.. +. ..+++.+++.+.....+...........++++.+++..   +.++..||+||
T Consensus        78 ~~~~~~~~~~~~~~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~  154 (224)
T TIGR02324        78 QASPREVLEVRRKTIGY-VSQFLR-VI-PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE  154 (224)
T ss_pred             hcCHHHHHHHHhcceEE-Eecccc-cC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence                       012344 333322 11 12345444443222223221122334567788887753   46788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++|+.+|+++|+||||++||+.++..+.+++.+
T Consensus       155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (224)
T TIGR02324       155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE  194 (224)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.97  E-value=1.4e-31  Score=229.03  Aligned_cols=167  Identities=15%  Similarity=0.190  Sum_probs=123.8

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      +|+++|+++.|++  +.  +++|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++....       
T Consensus         2 ~i~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (242)
T TIGR03411         2 ILYLEGLSVSFDG--FK--ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQI   74 (242)
T ss_pred             eEEEEeeEEEcCC--eE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHHH
Confidence            6899999999976  33  5599999999999999999999999999999999998   99999 44443211       


Q ss_pred             --CCeEEEEecCCCCCCCccCCcccChHHHHHhc-C-------CCCCccHHHHHHHHHhhcccC--CccCCCCCcccccc
Q 025293          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP  216 (255)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~-------~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqr  216 (255)
                        ...++ +..+.. ++ ..+++.++..+..... .       .........+.++++.+++..  +..+..||+||+||
T Consensus        75 ~~~~i~~-~~q~~~-~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qr  151 (242)
T TIGR03411        75 ARAGIGR-KFQKPT-VF-ENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQW  151 (242)
T ss_pred             HhcCeeE-eccccc-cC-CCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence              12343 332221 11 1245555544322110 0       000112234567788877753  56788999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus       152 v~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~  188 (242)
T TIGR03411       152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS  188 (242)
T ss_pred             HHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.97  E-value=1.1e-31  Score=223.05  Aligned_cols=162  Identities=17%  Similarity=0.141  Sum_probs=121.8

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (255)
                      |+++|+++.|++  +.  +++|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++...       ..
T Consensus         1 l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (198)
T TIGR01189         1 LAARNLACSRGE--RM--LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR   73 (198)
T ss_pred             CEEEEEEEEECC--EE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence            478999999987  34  5599999999999999999999999999999999998   99998 4444321       11


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      ..++ +.... ... ...++.++..+.....+    .....+.++++.+++.  .+.++..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~-~~~-~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  146 (198)
T TIGR01189        74 NILY-LGHLP-GLK-PELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA  146 (198)
T ss_pred             heEE-eccCc-ccc-cCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence            2333 32221 111 12455555544332221    1123456777777775  35778899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+||||++||+.++..+.+++.+
T Consensus       147 ~llllDEPt~~LD~~~~~~l~~~l~~  172 (198)
T TIGR01189       147 PLWILDEPTTALDKAGVALLAGLLRA  172 (198)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999875

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.7e-32  Score=236.24  Aligned_cols=171  Identities=11%  Similarity=0.065  Sum_probs=126.5

Q ss_pred             eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .|+++||++.|++... ...+|+|+||+|++||++||+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK   78 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999964210 0125699999999999999999999999999999999998   99999 4554221       


Q ss_pred             -----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293          148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~  218 (255)
                           ...+|+ +.++.. .+..  .++.+++.+.....++........+.++++.+++.   .+.++..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         79 YIRPVRKRIGM-VFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             hHHHHHhheEE-EecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                 113455 444321 1111  25555555443333332222233456788888875   24678899999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|+.+|++||+||||++||+.++..+.+++.+
T Consensus       156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~  190 (286)
T PRK13646        156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS  190 (286)
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999875

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.97  E-value=9e-32  Score=233.85  Aligned_cols=165  Identities=15%  Similarity=0.158  Sum_probs=123.5

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----------
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------  147 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----------  147 (255)
                      .++|+++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...          
T Consensus        26 ~~~~~~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~   98 (269)
T cd03294          26 SKEEILKKTGQ--TV--GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE   98 (269)
T ss_pred             hhhhhhhhcCC--ce--EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence            56799999987  34  4599999999999999999999999999999999998   99998 4444211          


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                        ...+++ +..... ++ ..+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++|
T Consensus        99 ~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral  175 (269)
T cd03294          99 LRRKKISM-VFQSFA-LL-PHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL  175 (269)
T ss_pred             hhcCcEEE-EecCcc-cC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence              112444 333322 11 1246656555433222222111223456778888775  3677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+.++..+.++|.+
T Consensus       176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~  205 (269)
T cd03294         176 AVDPDILLMDEAFSALDPLIRREMQDELLR  205 (269)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998865

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.97  E-value=7.9e-32  Score=228.85  Aligned_cols=163  Identities=13%  Similarity=0.136  Sum_probs=119.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...         
T Consensus         1 l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (230)
T TIGR03410         1 LEVSNLNVYYGQ--SH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA   73 (230)
T ss_pred             CEEEeEEEEeCC--eE--EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence            478999999986  33  5599999999999999999999999999999999998   99999 4444211         


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-c--cCCccCCCCCcccccchhhhhhhc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-N--QGSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~--~~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      ....++ +..+.. ++ ..+++.++..+.....+..   .......+++.++ +  ..+.++..||+||+||+++|++++
T Consensus        74 ~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  147 (230)
T TIGR03410        74 RAGIAY-VPQGRE-IF-PRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV  147 (230)
T ss_pred             HhCeEE-eccCCc-cc-CCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence            112344 333322 11 1245555554332222111   1122344455443 2  356778899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+++|+||||++||+.++..+.++|.+
T Consensus       148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~  176 (230)
T TIGR03410       148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRR  176 (230)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=9.3e-32  Score=233.98  Aligned_cols=170  Identities=13%  Similarity=0.159  Sum_probs=126.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++|+++.|++..+.  +++|+||+|.+||+++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         6 ~~l~~~nl~~~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   80 (271)
T PRK13632          6 VMIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE   80 (271)
T ss_pred             eEEEEEeEEEEcCCCCcc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence            579999999999632133  5599999999999999999999999999999999998   99998 4544221       


Q ss_pred             -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       ...+|+ +..+.. .+.  ..++.+++.+.....++........+.++++.+++.  .+..+..||+||+||+++|++|
T Consensus        81 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral  157 (271)
T PRK13632         81 IRKKIGI-IFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL  157 (271)
T ss_pred             HhcceEE-EEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence             112444 333321 111  146666654433222221111122356778888775  4677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+.++..+.+++.+
T Consensus       158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~  187 (271)
T PRK13632        158 ALNPEIIIFDESTSMLDPKGKREIKKIMVD  187 (271)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.6e-31  Score=230.20  Aligned_cols=170  Identities=14%  Similarity=0.093  Sum_probs=124.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      +.+|+++||++.|++  +.  +++|+||+|.+||+++|+||||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus         2 ~~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~   74 (253)
T PRK14267          2 KFAIETVNLRVYYGS--NH--VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNIY   74 (253)
T ss_pred             cceEEEEeEEEEeCC--ee--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEcc
Confidence            458999999999976  33  5599999999999999999999999999999999986   6     4898 4444211 


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccc------CCccCCCCC
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFD  210 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~------~~~~~~~lS  210 (255)
                               ...+++ +.++.. +. ..+++.+++.+.....+..  .......+..+++.+++.      .+.++..||
T Consensus        75 ~~~~~~~~~~~~i~~-~~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  151 (253)
T PRK14267         75 SPDVDPIEVRREVGM-VFQYPN-PF-PHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLS  151 (253)
T ss_pred             ccccChHHHhhceeE-EecCCc-cC-CCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCC
Confidence                     112344 333322 11 1245556554432222211  111122345677777653      356778999


Q ss_pred             cccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus       152 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  195 (253)
T PRK14267        152 GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL  195 (253)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998753

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=2.2e-31  Score=223.91  Aligned_cols=166  Identities=16%  Similarity=0.105  Sum_probs=124.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      .++|+++|+++.|++  +.  +++++||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++....     
T Consensus         9 ~~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~   81 (214)
T PRK13543          9 PPLLAAHALAFSRNE--EP--VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRS   81 (214)
T ss_pred             cceEEEeeEEEecCC--ce--eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhh
Confidence            468999999999986  33  5599999999999999999999999999999999998   99998 45543211     


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ...++ +..... .. ..+++.++........+   ........++++.+++.  .+.++..||+||+||+++|++++.+
T Consensus        82 ~~i~~-~~q~~~-~~-~~~t~~e~l~~~~~~~~---~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  155 (214)
T PRK13543         82 RFMAY-LGHLPG-LK-ADLSTLENLHFLCGLHG---RRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSP  155 (214)
T ss_pred             hceEE-eecCcc-cc-cCCcHHHHHHHHHHhcC---CcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcC
Confidence            12343 332221 11 12355555443322212   11223445677777765  4677889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.+++.+.+++.+
T Consensus       156 p~llllDEPt~~LD~~~~~~l~~~l~~  182 (214)
T PRK13543        156 APLWLLDEPYANLDLEGITLVNRMISA  182 (214)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999864

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-31  Score=229.92  Aligned_cols=169  Identities=14%  Similarity=0.143  Sum_probs=124.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      ..+|+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus         5 ~~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273          5 EAIIETENLNLFYTD--FK--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             CceEEEeeeEEEeCC--ce--eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence            458999999999986  34  4599999999999999999999999999999999996   6     4788 4443211 


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhcc------cCCccCCCCCc
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRN------QGSVYAPSFDH  211 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~------~~~~~~~~lS~  211 (255)
                               ...+++ +.++... ..  .++.+++.+.....+... ......+..+++.+++      ..+.++..|||
T Consensus        78 ~~~~~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg  153 (254)
T PRK14273         78 SNNFDILELRRKIGM-VFQTPNP-FL--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG  153 (254)
T ss_pred             cccccHHHHhhceEE-Eeecccc-cc--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence                     112444 3333222 11  466666654333222111 1112334566666665      24667889999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  196 (254)
T PRK14273        154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINL  196 (254)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.97  E-value=1.8e-31  Score=229.82  Aligned_cols=170  Identities=14%  Similarity=0.173  Sum_probs=122.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------CC
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------KP  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------~~  148 (255)
                      ++|+++||++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++..      ..
T Consensus         2 ~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (253)
T TIGR02323         2 PLLQVSGLSKSYGG--GK--GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ   74 (253)
T ss_pred             ceEEEeeeEEEeCC--ce--EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence            47999999999976  33  4599999999999999999999999999999999998   99999 444321      10


Q ss_pred             -----------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       149 -----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~  213 (255)
                                 ..+++ +..+........+++.++.......... ........+.++++.+++.   .+..+..||+||
T Consensus        75 ~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~  153 (253)
T TIGR02323        75 LSEAERRRLMRTEWGF-VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM  153 (253)
T ss_pred             CCHHHHHHhhhcceEE-EEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence                       12344 3333211111112222333221111111 1111123456778888874   356788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++|+.+|++||+||||++||+.+++.+.+++.+
T Consensus       154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~  193 (253)
T TIGR02323       154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG  193 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-31  Score=230.46  Aligned_cols=169  Identities=12%  Similarity=0.118  Sum_probs=122.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK--  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~--  147 (255)
                      .+++++|+++.|++  +.  +|+|+||+|++||++||+||||||||||+++|+|+++   |     ++|+ .+++...  
T Consensus         3 ~~l~i~~v~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~---~~~~~~~~G~I~~~g~~~~~   75 (258)
T PRK14241          3 KRIDVKDLNIYYGS--FH--AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE---VIPGARVEGEVLLDGEDLYG   75 (258)
T ss_pred             ccEEEeeEEEEECC--Ee--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cccCCCcceEEEECCEeccc
Confidence            36899999999986  33  5599999999999999999999999999999999985   4     6898 4444211  


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ...++. +..+...+  ..+++.+++.+.....+. ........+..+++.+++.      .+.++..||+|
T Consensus        76 ~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  152 (258)
T PRK14241         76 PGVDPVAVRRTIGM-VFQRPNPF--PTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGG  152 (258)
T ss_pred             cccChHHHhcceEE-EccccccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHH
Confidence                    112444 33322211  124555555443322221 1111122345667777652      35677899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus       153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  194 (258)
T PRK14241        153 QQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINEL  194 (258)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.97  E-value=1.7e-31  Score=230.63  Aligned_cols=169  Identities=15%  Similarity=0.174  Sum_probs=125.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         4 ~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   76 (257)
T PRK10619          4 NKLNVIDLHKRYGE--HE--VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD   76 (257)
T ss_pred             ccEEEeeeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence            46899999999986  34  4599999999999999999999999999999999998   99998 4444211       


Q ss_pred             --------------CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhcccC---CccCCCC
Q 025293          148 --------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF  209 (255)
Q Consensus       148 --------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~l  209 (255)
                                    ...+++ +..+.. +. ..+++.++..+... ..+.........+.++++.+++..   +.++..|
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~-v~q~~~-l~-~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L  153 (257)
T PRK10619         77 GQLKVADKNQLRLLRTRLTM-VFQHFN-LW-SHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL  153 (257)
T ss_pred             cccccccchHHHHHhhceEE-EecCcc-cC-CCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence                          112444 333322 11 11455555543221 112211112334567888888753   5678899


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+||+++|++|+.+|+++|+||||++||+.+++.+.+++.+.
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l  198 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQL  198 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988753

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.8e-31  Score=230.65  Aligned_cols=169  Identities=14%  Similarity=0.123  Sum_probs=124.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      +++|+++|+++.|++  +.  +|+|+||+|++||++||+|+||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus        10 ~~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~~~g~~i~   82 (258)
T PRK14268         10 QPQIKVENLNLWYGE--KQ--ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMND---LIKNCRIEGKVSIEGEDIY   82 (258)
T ss_pred             ceeEEEeeeEEEeCC--ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---cccCCCcceEEEECCEEcc
Confidence            568999999999976  33  5599999999999999999999999999999999985   4     7898 4443211 


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                               ....++ +..+.. +..  .++.+++.+.....+.........+..+++.+++.      .+.++..||+|
T Consensus        83 ~~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  158 (258)
T PRK14268         83 EPDVDVVELRKNVGM-VFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGG  158 (258)
T ss_pred             cccchHHHHhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHH
Confidence                     112444 333221 211  45666665443333322111122345677777652      35677899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l  200 (258)
T PRK14268        159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL  200 (258)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=3.1e-31  Score=209.73  Aligned_cols=172  Identities=18%  Similarity=0.182  Sum_probs=138.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-c-CCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVK------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~-~~~~~~------  147 (255)
                      .+|++++++|..+.....+.+|++|+|.|++||.++|+||+||||||||-+++|+..   |++|+ + .+....      
T Consensus         5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~   81 (228)
T COG4181           5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDA   81 (228)
T ss_pred             ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHH
Confidence            389999999999876666778899999999999999999999999999999999998   99999 3 333221      


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la  220 (255)
                           ...+|. +++ .|.+- +.++..+|+.......+-...........+++.++++.  ..|+.+|||||+|||+||
T Consensus        82 rA~~R~~~vGf-VFQ-SF~Li-p~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA  158 (228)
T COG4181          82 RAALRARHVGF-VFQ-SFHLI-PNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA  158 (228)
T ss_pred             HHHhhccceeE-EEE-eeecc-ccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence                 234665 333 33322 23677888777766666432333345678899999884  578899999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++..|+||+.||||-.||...-.++.+++-.
T Consensus       159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~  191 (228)
T COG4181         159 RAFAGRPDVLFADEPTGNLDRATGDKIADLLFA  191 (228)
T ss_pred             HHhcCCCCEEeccCCCCCcchhHHHHHHHHHHH
Confidence            999999999999999999999999999998754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.4e-31  Score=233.78  Aligned_cols=171  Identities=15%  Similarity=0.085  Sum_probs=124.3

Q ss_pred             eEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .|+++||++.|++... ...+|+|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (280)
T PRK13649          2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNK   78 (280)
T ss_pred             eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccc
Confidence            3889999999975210 0115699999999999999999999999999999999998   99999 4444211       


Q ss_pred             -----CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchh
Q 025293          148 -----PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       148 -----~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~  218 (255)
                           ...+++ +.++. ..+..  .++.+++.+.....+.........+.++++.+++.   .+.++..||+||+||++
T Consensus        79 ~~~~~~~~i~~-~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~  155 (280)
T PRK13649         79 DIKQIRKKVGL-VFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVA  155 (280)
T ss_pred             CHHHHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                 112444 34332 11111  35555554433222221111122345677777775   35778899999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (280)
T PRK13649        156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK  190 (280)
T ss_pred             HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.6e-31  Score=233.55  Aligned_cols=173  Identities=15%  Similarity=0.129  Sum_probs=125.9

Q ss_pred             CeEEecCchheehhhhc--ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~--~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      +||+++||++.|++..+  ...+|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...     
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence            58999999999974210  1125699999999999999999999999999999999998   99998 4444221     


Q ss_pred             ----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 ----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                          ...+|+ +.++.. .+..  .++.+++.+.....+.........+..+++.+++.  .+.++..||+||+||+++|
T Consensus        80 ~~~~~~~i~~-v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la  156 (280)
T PRK13633         80 LWDIRNKAGM-VFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA  156 (280)
T ss_pred             HHHHhhheEE-EecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence                112444 333321 1111  23444443333222322222233456778877775  3577899999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|+++|+||||++||+..+..+.++|.+.
T Consensus       157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  190 (280)
T PRK13633        157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKEL  190 (280)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.6e-31  Score=228.67  Aligned_cols=164  Identities=15%  Similarity=0.099  Sum_probs=122.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++|+++.|++  +.  +++|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 ~~~l~~~~l~~~~~~--~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   73 (241)
T PRK14250          1 MNEIEFKEVSYSSFG--KE--ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI   73 (241)
T ss_pred             CceEEEEeEEEEeCC--ee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence            457899999999976  33  5599999999999999999999999999999999998   99998 4444211      


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~  222 (255)
                        ....++ +..+.. +..  .++.++..+....    .......+.++++.+++.   .+.++..||+||+||+++|++
T Consensus        74 ~~~~~i~~-~~q~~~-~~~--~tv~e~l~~~~~~----~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a  145 (241)
T PRK14250         74 DLRRKIGM-VFQQPH-LFE--GTVKDNIEYGPML----KGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART  145 (241)
T ss_pred             HhhhcEEE-EecCch-hch--hhHHHHHhcchhh----cCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence              122343 333322 111  2333332221111    111223456778888874   356788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|++||+||||++||+.+++.+.++|.+
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  176 (241)
T PRK14250        146 LANNPEVLLLDEPTSALDPTSTEIIEELIVK  176 (241)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998865

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.97  E-value=2.1e-31  Score=245.61  Aligned_cols=178  Identities=19%  Similarity=0.199  Sum_probs=136.8

Q ss_pred             CCCeEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC
Q 025293           74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~  145 (255)
                      ..++++++||+|.|...       .+.+.+++||||++.+||++||+|+||||||||.|+|+|+++   |++|+ .+++.
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~  353 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ  353 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence            45789999999999841       124567899999999999999999999999999999999998   99998 55443


Q ss_pred             CCCC---------CeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---CCccCCCCCcc
Q 025293          146 VKPP---------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (255)
Q Consensus       146 ~~~~---------~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G  212 (255)
                      ....         ..-.+++++.+.--++.+++.+.+.......... .......+.++++.+++.   .++|+++||||
T Consensus       354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG  433 (539)
T COG1123         354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG  433 (539)
T ss_pred             ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence            2110         1223455555554444456655554444433321 122223467789999887   46899999999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||++|||||+.+|++||+||||+.||+..+.++.++|.+.
T Consensus       434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~l  475 (539)
T COG1123         434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDL  475 (539)
T ss_pred             hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999764

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.97  E-value=1.8e-31  Score=222.35  Aligned_cols=160  Identities=16%  Similarity=0.098  Sum_probs=119.5

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (255)
                      |+++||++.|++  +.  +++|+||+|++|+++||+|+||||||||+++|+|+++   |++|+ .+++...       ..
T Consensus         1 l~i~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (201)
T cd03231           1 LEADELTCERDG--RA--LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR   73 (201)
T ss_pred             CEEEEEEEEeCC--ce--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence            478999999986  33  5599999999999999999999999999999999998   99998 4443221       11


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      ..++ +..... +. ...++.++.....      .......+..+++.+++.  .+.++..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~------~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  144 (201)
T cd03231          74 GLLY-LGHAPG-IK-TTLSVLENLRFWH------ADHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR  144 (201)
T ss_pred             heEE-eccccc-cC-CCcCHHHHHHhhc------ccccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence            2333 222211 11 1134433332211      111234566777877775  35678899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+||||++||+..++.+.+++.+
T Consensus       145 ~llllDEPt~~LD~~~~~~l~~~l~~  170 (201)
T cd03231         145 PLWILDEPTTALDKAGVARFAEAMAG  170 (201)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999865

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=3.6e-31  Score=220.41  Aligned_cols=162  Identities=16%  Similarity=0.106  Sum_probs=121.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ||+++|+++.|++  +.  +++|+||+|++||++||+||||||||||+++|+|+.+   |++|+ .+++....       
T Consensus         1 ml~~~~l~~~~~~--~~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~   73 (200)
T PRK13540          1 MLDVIELDFDYHD--QP--LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ   73 (200)
T ss_pred             CEEEEEEEEEeCC--ee--EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence            4789999999986  34  5599999999999999999999999999999999998   99998 45543211       


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ...++ +..+.. ++ ...++.++..+...   ...  ....+.++++.+++.  .+.++..||+||+||+++|++++.+
T Consensus        74 ~~i~~-~~q~~~-~~-~~~tv~~~~~~~~~---~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~  145 (200)
T PRK13540         74 KQLCF-VGHRSG-IN-PYLTLRENCLYDIH---FSP--GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK  145 (200)
T ss_pred             hheEE-eccccc-cC-cCCCHHHHHHHHHh---cCc--chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            12343 332221 11 12455554443211   111  123456777777764  3566779999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+||||++||+.++..+.+++.+
T Consensus       146 p~~lilDEP~~~LD~~~~~~l~~~l~~  172 (200)
T PRK13540        146 AKLWLLDEPLVALDELSLLTIITKIQE  172 (200)
T ss_pred             CCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999875

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.6e-31  Score=227.93  Aligned_cols=171  Identities=16%  Similarity=0.133  Sum_probs=123.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (255)
                      .++|+++||++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+....  .|++|+ .+++...    
T Consensus         4 ~~~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          4 PPKMEARGLSFFYGD--FQ--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CcEEEEeeeEEEECC--ee--eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            368999999999976  33  559999999999999999999999999999999986200  037898 4444211    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k  214 (255)
                            ...+++ +.++.. .+.  .++.+++.+.....+... ......+..+++.+++.      .+..+..||+||+
T Consensus        80 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  155 (253)
T PRK14242         80 VDVVELRRRVGM-VFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ  155 (253)
T ss_pred             cCHHHHhhcEEE-EecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence                  112444 333322 221  255555544333222211 11223455677777663      2566789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (253)
T PRK14242        156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE  194 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.97  E-value=1.6e-31  Score=240.32  Aligned_cols=159  Identities=14%  Similarity=0.181  Sum_probs=123.8

Q ss_pred             heehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC-----------CCCe
Q 025293           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK-----------PPDV  151 (255)
Q Consensus        85 k~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~-----------~~~~  151 (255)
                      |.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++. +.           ...+
T Consensus         1 ~~~~~--~~--~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i   73 (363)
T TIGR01186         1 KKTGG--KK--GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI   73 (363)
T ss_pred             CccCC--ce--eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence            45766  33  5699999999999999999999999999999999998   99999 45543 21           2245


Q ss_pred             EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      |+ +.+... ++ +.+++.+++.+.....+.........+.++++.+++.  .+.++..|||||+|||++|++|+.+|+|
T Consensus        74 ~~-v~Q~~~-l~-~~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i  150 (363)
T TIGR01186        74 GM-VFQQFA-LF-PHMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI  150 (363)
T ss_pred             EE-EECCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            65 333322 22 2257777777665554443222344567888888886  4678889999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||||++||+..+..+.+++.+
T Consensus       151 LLlDEP~saLD~~~r~~l~~~l~~  174 (363)
T TIGR01186       151 LLMDEAFSALDPLIRDSMQDELKK  174 (363)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999998865

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.3e-31  Score=231.29  Aligned_cols=170  Identities=14%  Similarity=0.130  Sum_probs=124.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      ++|+++|+++.|++..+.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++... .     
T Consensus         6 ~~l~i~~l~~~~~~~~~~--~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~   80 (269)
T PRK13648          6 SIIVFKNVSFQYQSDASF--TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFEK   80 (269)
T ss_pred             ceEEEEEEEEEcCCCCCc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHH
Confidence            579999999999752122  5599999999999999999999999999999999998   99998 4544321 1     


Q ss_pred             --CCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 --~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                        ...++ +..+.. .+..  .++.++..+.....+.........+..+++.+++.  .+.++..||+||+||+++|+++
T Consensus        81 ~~~~i~~-v~q~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral  157 (269)
T PRK13648         81 LRKHIGI-VFQNPDNQFVG--SIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVL  157 (269)
T ss_pred             HHhheeE-EEeChHHhccc--ccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHH
Confidence              12444 333321 1111  23333333322222221111223456778877775  3567889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++||+||||++||+.++..+.+++.+
T Consensus       158 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  187 (269)
T PRK13648        158 ALNPSVIILDEATSMLDPDARQNLLDLVRK  187 (269)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998865

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.7e-31  Score=229.88  Aligned_cols=166  Identities=15%  Similarity=0.144  Sum_probs=121.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      |+++||++.|++  +.  +++|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++...         
T Consensus         1 i~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   73 (252)
T TIGR03005         1 VRFSDVTKRFGI--LT--VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP   73 (252)
T ss_pred             CEEEEEEEEeCC--ee--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence            478999999976  33  5599999999999999999999999999999999998   99998 4444211         


Q ss_pred             ------------CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcc
Q 025293          148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG  212 (255)
Q Consensus       148 ------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G  212 (255)
                                  ....++ +..+.. +. ...++.+++..... ..+.........+.++++.+++.  .+..+..||+|
T Consensus        74 ~~~~~~~~~~~~~~~i~~-v~q~~~-~~-~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G  150 (252)
T TIGR03005        74 LVPADEKHLRQMRNKIGM-VFQSFN-LF-PHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG  150 (252)
T ss_pred             ccccchhHHHHHhhCeEE-EecCcc-cC-CCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence                        112444 333322 11 12455555543221 11221111223456777777765  34667899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|++|+.+|+++|+||||++||+.++..+.++|.+
T Consensus       151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (252)
T TIGR03005       151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR  191 (252)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998875

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.97  E-value=3.5e-31  Score=230.00  Aligned_cols=173  Identities=17%  Similarity=0.135  Sum_probs=124.2

Q ss_pred             CCeEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC
Q 025293           75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~  146 (255)
                      |++|+++||++.|++.       .+.  +++|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++..
T Consensus         1 ~~~l~~~nl~~~~~~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~   75 (268)
T PRK10419          1 MTLLNVSGLSHHYAHGGLSGKHQHQT--VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEP   75 (268)
T ss_pred             CceEEEeceEEEecCCccccccCcee--eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence            4689999999999730       133  5599999999999999999999999999999999998   99998 444431


Q ss_pred             C-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293          147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~  211 (255)
                      .           ....++ +..+.........++.++..+.... .+.........+.++++.+++.   .+..+..||+
T Consensus        76 ~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~  154 (268)
T PRK10419         76 LAKLNRAQRKAFRRDIQM-VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG  154 (268)
T ss_pred             ccccChhHHHHHHhcEEE-EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence            1           113444 4433211111113333333221111 1111111223456788888774   3577889999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus       155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  196 (268)
T PRK10419        155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK  196 (268)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998865

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.4e-31  Score=229.40  Aligned_cols=168  Identities=17%  Similarity=0.200  Sum_probs=123.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +|+++|+++.|++  +.  +|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...        
T Consensus         2 ~l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (255)
T PRK11231          2 TLRTENLTVGYGT--KR--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL   74 (255)
T ss_pred             EEEEEeEEEEECC--EE--EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence            6899999999986  34  5599999999999999999999999999999999998   99998 4444211        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHH----hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                      ....++ +..+....  ..+++.++..+...    ..+.........+..+++.+++.  .+.++..||+||+||+++|+
T Consensus        75 ~~~i~~-~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  151 (255)
T PRK11231         75 ARRLAL-LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM  151 (255)
T ss_pred             hhheEE-ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence            112444 33332211  12344444332110    01111111223456677777775  36778899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++.+|++||+||||++||+.++..+.+++.+.
T Consensus       152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~l  184 (255)
T PRK11231        152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMREL  184 (255)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998653

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.4e-31  Score=228.40  Aligned_cols=173  Identities=12%  Similarity=0.061  Sum_probs=124.2

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC---
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~---  147 (255)
                      ...+|+++|+++.|++  +.  +|+|+||+|++||+++|+||||||||||+++|+|+++  ...|++|+ .+++...   
T Consensus        10 ~~~~l~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~   85 (260)
T PRK10744         10 APSKIQVRNLNFYYGK--FH--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTP   85 (260)
T ss_pred             CCceEEEEEEEEEeCC--eE--EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccc
Confidence            4568999999999986  33  5599999999999999999999999999999999974  01137898 4443211   


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-CCCCCccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~  213 (255)
                             ...+++ +..+.. +..  .++.++..+..... +.........+.++++.+++.      .+.++..||+||
T Consensus        86 ~~~~~~~~~~i~~-~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq  161 (260)
T PRK10744         86 KQDIALLRAKVGM-VFQKPT-PFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ  161 (260)
T ss_pred             ccchHHHhcceEE-EecCCc-cCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence                   122444 333321 111  35555544332221 121111123456677777753      356778999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++|+.+|++||+||||++||+.+++.+.+++.+.
T Consensus       162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  202 (260)
T PRK10744        162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITEL  202 (260)
T ss_pred             HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.97  E-value=2.5e-31  Score=248.16  Aligned_cols=200  Identities=18%  Similarity=0.155  Sum_probs=144.3

Q ss_pred             hHHHHhhCcCCCCccccccchhhhhhhhHH------------------hhhc-ccCCCeEEecCchheehhhhccccccc
Q 025293           38 SFSWIRRNANAQPVFGKTRSLVQNKTSLKV------------------LCSQ-RREIPVVEARCMDEVYDALAQRLLPTS   98 (255)
Q Consensus        38 ~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~-~~~~~~l~v~~lsk~y~~~~~~il~l~   98 (255)
                      .++|++|+.+++.+..+++++.+++++++.                  .... ..+..+++++|+++.|++. +.  +++
T Consensus       263 ~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~-~~--l~~  339 (530)
T COG0488         263 EQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG-RL--LLK  339 (530)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceeeccCCcccCCCeeEEEeccccccCCC-ce--eec
Confidence            358999977666554445555554444441                  0111 2335689999999999763 33  459


Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHH
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~  178 (255)
                      ++||.|.+|+++||+||||+|||||||+|+|.+.   |.+|+        ..+|..+.+.+|.+....+.....+.  ..
T Consensus       340 ~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~--------v~~g~~v~igyf~Q~~~~l~~~~t~~--d~  406 (530)
T COG0488         340 DLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGT--------VKVGETVKIGYFDQHRDELDPDKTVL--EE  406 (530)
T ss_pred             CceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCce--------EEeCCceEEEEEEehhhhcCccCcHH--HH
Confidence            9999999999999999999999999999999998   88885        22333344445554433222111121  11


Q ss_pred             hcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          179 RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ....++......+...+..|+|..   .+++..||||||.|+.+|+.+..+|.+|||||||+.||..+...+.+.|..
T Consensus       407 l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~  484 (530)
T COG0488         407 LSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD  484 (530)
T ss_pred             HHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHh
Confidence            111222222567889999999974   578899999999999999999999999999999999999999999988753

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.97  E-value=2.3e-31  Score=223.12  Aligned_cols=164  Identities=15%  Similarity=0.119  Sum_probs=119.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++|+++.|++  +.    .|+||+|.+||+++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 i~~~~l~~~~~~--~~----~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~   71 (211)
T cd03298           1 VRLDKIRFSYGE--QP----MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP   71 (211)
T ss_pred             CEEEeEEEEeCC--Ee----cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence            468999999975  21    39999999999999999999999999999999998   99998 4444211      112


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .++ +.++...+  ..+++.++..+...............+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        72 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~  148 (211)
T cd03298          72 VSM-LFQENNLF--AHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP  148 (211)
T ss_pred             EEE-EecccccC--CCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            454 34332211  1135544443221110000111233456778887775  356778999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.+++.+.+++.+
T Consensus       149 llllDEP~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298         149 VLLLDEPFAALDPALRAEMLDLVLD  173 (211)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.2e-31  Score=233.62  Aligned_cols=172  Identities=12%  Similarity=0.054  Sum_probs=124.1

Q ss_pred             CeEEecCchheehhhhc-ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~-~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ..|+++||++.|++... ...+++|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   81 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK   81 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence            36899999999975210 0125599999999999999999999999999999999998   99998 4443211      


Q ss_pred             -------CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccc
Q 025293          148 -------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP  216 (255)
Q Consensus       148 -------~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqr  216 (255)
                             ...+++ +.++. +....  .++.+++.+.....+.........+..+++.+++.   .+.++..||+||+||
T Consensus        82 ~~~~~~~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr  158 (289)
T PRK13645         82 IKEVKRLRKEIGL-VFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR  158 (289)
T ss_pred             cccHHHHhccEEE-EEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence                   112444 33332 11111  24555554433222221111123345677777773   357788999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++|+.+|++|||||||++||+.+++.+.++|.+
T Consensus       159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  195 (289)
T PRK13645        159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER  195 (289)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998865

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.5e-31  Score=229.20  Aligned_cols=169  Identities=15%  Similarity=0.114  Sum_probs=124.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      +.+|+++||++.|++  +.  +|+|+||+|++|++++|+|+||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus        17 ~~~l~~~nl~~~~~~--~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~I~~~g~~i~   89 (267)
T PRK14235         17 EIKMRARDVSVFYGE--KQ--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND---TIDGCRVTGKITLDGEDIY   89 (267)
T ss_pred             CceEEEEeEEEEECC--EE--EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEECc
Confidence            458999999999986  34  5599999999999999999999999999999999985   4     7898 4444211 


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-C-CccHHHHHHHHHhhccc------CCccCCCCC
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-W-TFNPLLLLNCLKNLRNQ------GSVYAPSFD  210 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~l~~~------~~~~~~~lS  210 (255)
                               ...+++ +..+.. ...  .++.+++.+.....+.. . ......+..+++.+++.      .+.++..||
T Consensus        90 ~~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS  165 (267)
T PRK14235         90 DPRLDVVELRARVGM-VFQKPN-PFP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLS  165 (267)
T ss_pred             ccccchHHHhhceEE-EecCCC-CCC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCC
Confidence                     112444 333322 111  25555554433222221 1 11123456677777763      245678999


Q ss_pred             cccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       166 gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l  209 (267)
T PRK14235        166 GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDEL  209 (267)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998753

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.97  E-value=6.3e-31  Score=226.33  Aligned_cols=160  Identities=17%  Similarity=0.144  Sum_probs=119.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      ++|+++||++.|++  +.  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++   ....++ 
T Consensus         3 ~~l~~~~l~~~~~~--~~--vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~---~~~i~~-   71 (251)
T PRK09544          3 SLVSLENVSVSFGQ--RR--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNG---KLRIGY-   71 (251)
T ss_pred             cEEEEeceEEEECC--ce--EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECC---ccCEEE-
Confidence            48999999999986  33  5599999999999999999999999999999999998   99998 3433   123454 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl  232 (255)
                      +.++.. +.. .++  ....   ....+........+..+++.+++.  .+.++..||+||+||+++|++++.+|+++|+
T Consensus        72 v~q~~~-~~~-~l~--~~~~---~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL  144 (251)
T PRK09544         72 VPQKLY-LDT-TLP--LTVN---RFLRLRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL  144 (251)
T ss_pred             eccccc-ccc-ccC--hhHH---HHHhccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            333321 110 011  0111   111111112234566778888775  3567889999999999999999999999999


Q ss_pred             cCCCCCCChhHHHHHHHHHHh
Q 025293          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 Dep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+.++..+.++|.+
T Consensus       145 DEPt~~LD~~~~~~l~~~L~~  165 (251)
T PRK09544        145 DEPTQGVDVNGQVALYDLIDQ  165 (251)
T ss_pred             eCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999998864

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.97  E-value=2.7e-31  Score=229.83  Aligned_cols=177  Identities=17%  Similarity=0.203  Sum_probs=129.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCC-CC-----
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQ-VK-----  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~-~~-----  147 (255)
                      +|+++||+..|......+.+++||||+|++||++||+|.|||||||+.+.|.|+++.  ..-.+|+ .+++. +.     
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            478999999997643345578999999999999999999999999999999999940  0013455 34443 11     


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHhhcccC-----CccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~G~k  214 (255)
                            ...++. |+++...-.++-+++.+.......... . ..........++++.+++..     +.|+.+|||||+
T Consensus        81 ~~~~iRG~~I~m-IfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr  159 (316)
T COG0444          81 ELRKIRGKEIAM-IFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR  159 (316)
T ss_pred             HHHhhcCceEEE-EEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence                  123444 555544333332343333333332211 1 12223456788899999873     688999999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||.||.+|+.+|++||.||||++||...+.++.++|++.
T Consensus       160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l  199 (316)
T COG0444         160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKEL  199 (316)
T ss_pred             HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.5e-31  Score=227.62  Aligned_cols=169  Identities=14%  Similarity=0.169  Sum_probs=122.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      |++|+++||++.|++  +.  +++++||+|++||+++|+|+||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus         1 ~~~l~~~~l~~~~~~--~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---~~~~~~~~G~i~i~g~~~~   73 (250)
T PRK14262          1 EPIIEIENFSAYYGE--KK--AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMND---HIPGFRVEGKIYFKGQDIY   73 (250)
T ss_pred             CceEEEEeeEEEeCC--ce--eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCCCcceEEEECCEEcc
Confidence            458999999999976  33  5599999999999999999999999999999999985   4     7898 4444211 


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~  211 (255)
                               ...+++ +.++.. +..  .++.+++.+.....+... ......+..+++.+++.      .+..+..||+
T Consensus        74 ~~~~~~~~~~~~i~~-~~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  149 (250)
T PRK14262         74 DPQLDVTEYRKKVGM-VFQKPT-PFP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSG  149 (250)
T ss_pred             cchhhHHHhhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCH
Confidence                     122444 333322 111  355555544332222211 11122345566666653      3567789999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus       150 Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14262        150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEEL  192 (250)
T ss_pred             HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.6e-31  Score=230.45  Aligned_cols=169  Identities=18%  Similarity=0.120  Sum_probs=123.7

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      .++|+++||++.|++  +.  +++|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...      
T Consensus         9 ~~~l~i~~l~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~   81 (265)
T PRK10575          9 DTTFALRNVSFRVPG--RT--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSK   81 (265)
T ss_pred             CceEEEeeEEEEECC--EE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHH
Confidence            357999999999976  33  5599999999999999999999999999999999998   99999 4444211      


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHH-hcC---CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRG---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~---~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                        ....++ +..+...+  ..+++.+++.+... ..+   .........+.++++.+++.  .+.++..|||||+||+++
T Consensus        82 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  158 (265)
T PRK10575         82 AFARKVAY-LPQQLPAA--EGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWI  158 (265)
T ss_pred             HHhhheEE-eccCCCCC--CCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHH
Confidence              112444 33321111  11344444432110 000   01111223456777877775  366788999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++++.+|++||+||||++||+.++..+.++|.+
T Consensus       159 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  192 (265)
T PRK10575        159 AMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR  192 (265)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998865

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.8e-31  Score=227.74  Aligned_cols=167  Identities=16%  Similarity=0.130  Sum_probs=119.7

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      |++|+++||++.|++  +.  +++++||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++... .    
T Consensus         3 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614          3 KVMLSFDKVSAHYGK--IQ--ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA   75 (237)
T ss_pred             ccEEEEEeEEEeeCC--ce--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence            468999999999976  33  5599999999999999999999999999999999998   99998 4444321 1    


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhh-ccc--CCccCCCCCcccccchhhhh
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                          ..+++ +..+.. .+ ..+++.++........  ........+..+++.+ ++.  .+.++..||+||+||+++|+
T Consensus        76 ~~~~~~i~~-~~q~~~-~~-~~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~  150 (237)
T PRK11614         76 KIMREAVAI-VPEGRR-VF-SRMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR  150 (237)
T ss_pred             HHHHhCEEE-eccCcc-cC-CCCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence                12343 333221 11 1134444443321110  1111112233444544 232  35677899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|+++|+||||++||+.++..+.+++.+
T Consensus       151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~  182 (237)
T PRK11614        151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ  182 (237)
T ss_pred             HHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999865

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.4e-31  Score=231.87  Aligned_cols=169  Identities=16%  Similarity=0.142  Sum_probs=125.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||+++||++.|++. +.  +++|+||+|.+||++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 ~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (275)
T PRK13639          1 ILETRDLKYSYPDG-TE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL   74 (275)
T ss_pred             CEEEEEEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence            47899999999641 23  5599999999999999999999999999999999998   99998 4444321        


Q ss_pred             --CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 --~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                        ...+++ +.++.. ....  .++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|++
T Consensus        75 ~~~~~i~~-v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara  151 (275)
T PRK13639         75 EVRKTVGI-VFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI  151 (275)
T ss_pred             HHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence              112454 444421 1111  35556554433222221111223456788888775  467788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|+++|+||||++||+.++..+.+++.+.
T Consensus       152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~l  183 (275)
T PRK13639        152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYDL  183 (275)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.97  E-value=6.9e-31  Score=226.46  Aligned_cols=166  Identities=14%  Similarity=0.144  Sum_probs=121.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCCc-cCCCCCC----
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK----  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p----~~G~-~~~~~~~----  147 (255)
                      +|+++||++.| +  +.  +++|+||+|.+||+++|+|+||||||||+++|+|+++   |    ++|+ .+++...    
T Consensus         4 ~l~~~~l~~~~-~--~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~   75 (254)
T PRK10418          4 QIELRNIALQA-A--QP--LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA   75 (254)
T ss_pred             EEEEeCeEEEe-c--cc--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence            68999999999 4  33  5599999999999999999999999999999999997   7    8998 4444321    


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-----CccCCCCCcccccchhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~G~kqrv~la  220 (255)
                        ...+++ +..+.........++.++........+.  ......+.++++.+++..     +..+..||+||+||+++|
T Consensus        76 ~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la  152 (254)
T PRK10418         76 LRGRKIAT-IMQNPRSAFNPLHTMHTHARETCLALGK--PADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA  152 (254)
T ss_pred             cccceEEE-EecCCccccCccccHHHHHHHHHHHcCC--ChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence              112444 3433211111112322222222122222  122345677888888764     567889999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+.+|++||+||||++||+.++..+.+++.+
T Consensus       153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~  185 (254)
T PRK10418        153 LALLCEAPFIIADEPTTDLDVVAQARILDLLES  185 (254)
T ss_pred             HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998865

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.6e-31  Score=254.21  Aligned_cols=177  Identities=16%  Similarity=0.159  Sum_probs=131.3

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .+++|+++||++.|++......+++||||+|++||++||+|+||||||||+|+|+|+++   |++|+ .+++...     
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~   85 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR   85 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence            35689999999999642111225699999999999999999999999999999999998   89998 3433100     


Q ss_pred             -----------------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc-----CCc
Q 025293          148 -----------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ-----GSV  204 (255)
Q Consensus       148 -----------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~-----~~~  204 (255)
                                       ...+|. +.++........+++.+++.+.... .++........+.++++.+++.     .+.
T Consensus        86 ~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  164 (623)
T PRK10261         86 QVIELSEQSAAQMRHVRGADMAM-IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR  164 (623)
T ss_pred             cccccccCCHHHHHHHhCCCEEE-EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence                             123555 4443210111225666766654332 1332222234567888888884     367


Q ss_pred             cCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       205 ~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++..|||||+|||+||++|+.+|++||+||||++||+..+.++.+++.+.
T Consensus       165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l  214 (623)
T PRK10261        165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVL  214 (623)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999763

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.3e-31  Score=239.43  Aligned_cols=163  Identities=15%  Similarity=0.087  Sum_probs=124.7

Q ss_pred             cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-----CC-------
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VK-------  147 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-----~~-------  147 (255)
                      .++.+.|+..  .  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++.     ..       
T Consensus        28 ~~~~~~~g~~--~--~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l  100 (382)
T TIGR03415        28 EEILDETGLV--V--GVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATL  100 (382)
T ss_pred             HHHHHhhCCE--E--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHH
Confidence            3566777662  2  6699999999999999999999999999999999998   99999 55542     11       


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                          ....++ +.+.. .++ +.+++.+++.+.....++..........++++.+++.  .+.++..|||||+||+++|+
T Consensus       101 ~~~r~~~i~~-vfQ~~-~l~-p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LAR  177 (382)
T TIGR03415       101 RRLRTHRVSM-VFQKF-ALM-PWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLAR  177 (382)
T ss_pred             HHHhcCCEEE-EECCC-cCC-CCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHH
Confidence                023555 33332 222 1257777776654444433322334567888888886  36778899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+.+|+|||+||||++||+..+..+.++|.+
T Consensus       178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~  209 (382)
T TIGR03415       178 AFAMDADILLMDEPFSALDPLIRTQLQDELLE  209 (382)
T ss_pred             HHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998865

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.1e-31  Score=231.93  Aligned_cols=170  Identities=14%  Similarity=0.158  Sum_probs=126.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---Cc-cCCCCCC----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVK----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~---G~-~~~~~~~----  147 (255)
                      .+|+++|+++.|++..+.  +++++||+|.+||++||+||||||||||+++|+|+++   |++   |+ .+++...    
T Consensus         4 ~~l~i~~l~~~~~~~~~~--~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~   78 (282)
T PRK13640          4 NIVEFKHVSFTYPDSKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKT   78 (282)
T ss_pred             ceEEEEEEEEEcCCCCcc--ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCC
Confidence            479999999999652223  5699999999999999999999999999999999997   887   77 4444321    


Q ss_pred             ----CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 ----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                          ...+|+ +..+.. .+.  ..++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|
T Consensus        79 ~~~~~~~ig~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~la  155 (282)
T PRK13640         79 VWDIREKVGI-VFQNPDNQFV--GATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIA  155 (282)
T ss_pred             HHHHHhheEE-EEECHHHhhc--cCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHH
Confidence                123455 443321 111  146666665433333322111223456778888776  3677889999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+.+|++||+||||++||+.++..+.+++.+
T Consensus       156 ral~~~P~llllDEPt~gLD~~~~~~l~~~l~~  188 (282)
T PRK13640        156 GILAVEPKIIILDESTSMLDPAGKEQILKLIRK  188 (282)
T ss_pred             HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999865

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.97  E-value=4.9e-31  Score=221.59  Aligned_cols=165  Identities=16%  Similarity=0.164  Sum_probs=121.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      ++++||++.|+.      .+.|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   71 (213)
T TIGR01277         1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP   71 (213)
T ss_pred             CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence            468999999974      3489999999999999999999999999999999998   99998 4544321      122


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .++ +..+.. ++ ..+++.+++.+...............+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        72 i~~-v~q~~~-~~-~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  148 (213)
T TIGR01277        72 VSM-LFQENN-LF-AHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP  148 (213)
T ss_pred             eEE-EeccCc-cC-CCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            444 333322 11 1245555544321111001111223456678888775  356778999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+||||++||+.++..+.++|.+.
T Consensus       149 llllDEPt~~LD~~~~~~~~~~l~~~  174 (213)
T TIGR01277       149 ILLLDEPFSALDPLLREEMLALVKQL  174 (213)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988753

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-31  Score=229.61  Aligned_cols=173  Identities=16%  Similarity=0.203  Sum_probs=140.1

Q ss_pred             CCeEEecCchheehhhhc--------------------ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc
Q 025293           75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI  134 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~--------------------~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~  134 (255)
                      +..|+++||+|.||.+.+                    -++-++|+||+|++|||+.|+|-||||||||+|+|+++++  
T Consensus         2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--   79 (386)
T COG4175           2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--   79 (386)
T ss_pred             CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence            356889999999986321                    2446789999999999999999999999999999999999  


Q ss_pred             CCCCCc-cCCCCC-C-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc
Q 025293          135 WPQKAS-SFDSQV-K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  201 (255)
Q Consensus       135 ~p~~G~-~~~~~~-~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  201 (255)
                       |++|+ .+++.. .           ..+.+.+++..+...   ..++.+|..+..+..|++.........++++.+++.
T Consensus        80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlP---hrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~  155 (386)
T COG4175          80 -PTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALLP---HRTVLENVAFGLEVQGVPKAEREERALEALELVGLE  155 (386)
T ss_pred             -CCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhcccc---chhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence             99999 454432 1           223444222223222   258888888888888888777777888999999986


Q ss_pred             --CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       202 --~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                        .+.|+++|||||+|||.+||||+.+|+|||+||||+.|||--+.++.+.+.+
T Consensus       156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~  209 (386)
T COG4175         156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLE  209 (386)
T ss_pred             hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHH
Confidence              5789999999999999999999999999999999999999998888877654

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4e-31  Score=224.89  Aligned_cols=164  Identities=17%  Similarity=0.209  Sum_probs=120.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      ||+++||++.|++.    .  .|+||+|.+|+++||+||||||||||+++|+|+++   |++|+ .+++...      ..
T Consensus         1 ~l~~~~l~~~~~~~----~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   71 (232)
T PRK10771          1 MLKLTDITWLYHHL----P--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR   71 (232)
T ss_pred             CeEEEEEEEEECCc----c--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence            47899999999751    1  48999999999999999999999999999999998   99999 4554321      12


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ..++ +..+.. ++ ..+++.+++.+.... ... .......+.++++.+++.  .+.++..||+||+||+++|++++.+
T Consensus        72 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  147 (232)
T PRK10771         72 PVSM-LFQENN-LF-SHLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE  147 (232)
T ss_pred             cEEE-Eecccc-cc-cCCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence            2444 333221 11 113444444321110 110 111233466778888775  4677889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|+||||++||+.+++.+.+++.+
T Consensus       148 p~lllLDEP~~gLD~~~~~~~~~~l~~  174 (232)
T PRK10771        148 QPILLLDEPFSALDPALRQEMLTLVSQ  174 (232)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998865

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.97  E-value=5e-31  Score=225.52  Aligned_cols=167  Identities=19%  Similarity=0.081  Sum_probs=119.0

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCCCCCC-C-----
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      |+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||+|+|+|++  +   |++|+ .+++... .     
T Consensus         1 l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR01978         1 LKIKDLHVSVED--KE--ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE   73 (243)
T ss_pred             CeEeeEEEEECC--EE--EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence            478999999986  33  559999999999999999999999999999999994  5   89998 4444311 1     


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CC-----C-CccHHHHHHHHHhhccc---CCccCC-CCCcccc
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-AP-----W-TFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG  214 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~-----~-~~~~~~~~~~l~~l~~~---~~~~~~-~lS~G~k  214 (255)
                         ...++ +.++...+  ..+++.++......... ..     . ......+..+++.+++.   .+..+. .||+||+
T Consensus        74 ~~~~~i~~-v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~  150 (243)
T TIGR01978        74 RARAGLFL-AFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK  150 (243)
T ss_pred             hhccceEe-eecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence               11233 22222111  12344444433222111 10     0 01123456778888875   245555 4999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  190 (243)
T TIGR01978       151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRL  190 (243)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.6e-31  Score=225.74  Aligned_cols=168  Identities=14%  Similarity=0.099  Sum_probs=123.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      .++|+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+.+   |     ++|+ .+++... 
T Consensus         2 ~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~   74 (251)
T PRK14270          2 KIKMESKNLNLWYGE--KQ--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY   74 (251)
T ss_pred             ccEEEEEEeEEEECC--ee--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence            368999999999976  33  5599999999999999999999999999999999985   5     7898 4444221 


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS~  211 (255)
                               ....++ +..+... ..  .++.++..+.....+.. .......+..+++.+++.      .+.++..||+
T Consensus        75 ~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  150 (251)
T PRK14270         75 DKDVDVVELRKRVGM-VFQKPNP-FP--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG  150 (251)
T ss_pred             cccccHHHHHhheEE-EecCCCc-CC--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence                     112444 4433322 11  35555555433322221 111122345677777652      3567889999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus       151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~  192 (251)
T PRK14270        151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE  192 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.97  E-value=3.8e-31  Score=225.70  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=111.6

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------CCCeEEEEecCCCCCCCccC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQL  167 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~l  167 (255)
                      +|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...       ....++ +..+...+. ..+
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~-~~~  110 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGV-VFGQKTQLW-WDL  110 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEE-EcCCccccC-CCC
Confidence            5699999999999999999999999999999999998   99999 4444211       112333 221111111 124


Q ss_pred             CcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (255)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~  245 (255)
                      ++.++..+.....+............+++.+++.  .+.++..||+||+||+++|++|+.+|++||+||||++||+.++.
T Consensus       111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  190 (236)
T cd03267         111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE  190 (236)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            5555554433333322111223345677777765  35677899999999999999999999999999999999999999


Q ss_pred             HHHHHHHh
Q 025293          246 DVSSMFDE  253 (255)
Q Consensus       246 ~l~~ll~~  253 (255)
                      .+.++|.+
T Consensus       191 ~l~~~l~~  198 (236)
T cd03267         191 NIRNFLKE  198 (236)
T ss_pred             HHHHHHHH
Confidence            99999875

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=5.1e-31  Score=227.20  Aligned_cols=168  Identities=17%  Similarity=0.147  Sum_probs=122.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      .+|+++|+++.|++  +.  +++++||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++... .     
T Consensus         4 ~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   76 (255)
T PRK11300          4 PLLSVSGLMMRFGG--LL--AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ   76 (255)
T ss_pred             ceEEEeeEEEEECC--EE--EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence            47999999999976  33  5599999999999999999999999999999999998   99998 4444321 1     


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhc-------CCC------CC--ccHHHHHHHHHhhccc--CCccCCC
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP------WT--FNPLLLLNCLKNLRNQ--GSVYAPS  208 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-------~~~------~~--~~~~~~~~~l~~l~~~--~~~~~~~  208 (255)
                         ..+++ +..+.. ++ ..+++.+++.+.....       +..      ..  .....+.++++.+++.  .+.++..
T Consensus        77 ~~~~~i~~-~~q~~~-~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  153 (255)
T PRK11300         77 IARMGVVR-TFQHVR-LF-REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN  153 (255)
T ss_pred             HHhcCeEE-eccCcc-cC-CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence               11222 232221 11 1245555544322100       110      00  0112345667777765  3677889


Q ss_pred             CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+||+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~  198 (255)
T PRK11300        154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE  198 (255)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999865

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9e-31  Score=226.31  Aligned_cols=172  Identities=13%  Similarity=0.119  Sum_probs=123.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~----  147 (255)
                      +++|+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++  ..+|++|+ .+++...    
T Consensus        10 ~~~l~i~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~   85 (259)
T PRK14274         10 QEVYQINGMNLWYGQ--HH--ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK   85 (259)
T ss_pred             CceEEEeeEEEEECC--ee--eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence            468999999999986  33  5599999999999999999999999999999999984  00115888 4444211    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k  214 (255)
                            ...+|+ +..+... ..  .++.++..+.....+... ......+..+++.+++.      .+..+..||+||+
T Consensus        86 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~  161 (259)
T PRK14274         86 VDLVELRKNIGM-VFQKGNP-FP--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ  161 (259)
T ss_pred             cCHHHHhhceEE-EecCCcc-cc--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence                  112444 3333221 11  245555543332222111 11122345667776653      3567789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|+++|+||||++||+.++..+.++|.+.
T Consensus       162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  201 (259)
T PRK14274        162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL  201 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998763

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=4.5e-31  Score=210.47  Aligned_cols=161  Identities=17%  Similarity=0.227  Sum_probs=118.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCC
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD  150 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~  150 (255)
                      ++.|+++||.|.||...    +|++||++..+|+++.|||.+|||||||||||+-+..   |+.|. .+++...   ...
T Consensus         4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~   76 (256)
T COG4598           4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK   76 (256)
T ss_pred             ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence            45789999999999855    6699999999999999999999999999999999988   99997 3443321   111


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHh--------------------------hccc--
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKN--------------------------LRNQ--  201 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~--------------------------l~~~--  201 (255)
                      -|.....+           ...+..++...++ ++.++....+++++|                          +++.  
T Consensus        77 ~G~l~~ad-----------~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek  145 (256)
T COG4598          77 DGQLKPAD-----------KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEK  145 (256)
T ss_pred             CCCeeeCC-----------HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhh
Confidence            12111110           0112223333333 444444444444444                          4443  


Q ss_pred             CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       202 ~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+.|+..|||||+||++|||+|+.+|+++++||||+.|||+-.-++..++..
T Consensus       146 ~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~  197 (256)
T COG4598         146 ADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQD  197 (256)
T ss_pred             hhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHH
Confidence            3578889999999999999999999999999999999999988888887765

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=8.6e-31  Score=225.41  Aligned_cols=168  Identities=16%  Similarity=0.162  Sum_probs=122.6

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCC---CCCc-cCCCCCC--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWP---QKAS-SFDSQVK--  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p---~~G~-~~~~~~~--  147 (255)
                      ++|+++||++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+.  .   |   ++|+ .+++...  
T Consensus         4 ~~l~~~~l~~~~~~--~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---p~~~~~G~i~~~g~~~~~   76 (252)
T PRK14239          4 PILQVSDLSVYYNK--KK--ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLN---PEVTITGSIVYNGHNIYS   76 (252)
T ss_pred             ceEEEEeeEEEECC--ee--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccC---CCCCccceEEECCEECcC
Confidence            47999999999986  33  559999999999999999999999999999999984  3   5   4898 4444211  


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ...+++ +.++.. +..  .++.+++.+.....+... ......+..+++.+++.      .+..+..||+|
T Consensus        77 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  152 (252)
T PRK14239         77 PRTDTVDLRKEIGM-VFQQPN-PFP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGG  152 (252)
T ss_pred             cccchHhhhhcEEE-EecCCc-cCc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHH
Confidence                    112444 333322 111  356566554333223211 11123345567766652      35677899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus       153 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  194 (252)
T PRK14239        153 QQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGL  194 (252)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.97  E-value=8.7e-31  Score=221.52  Aligned_cols=162  Identities=22%  Similarity=0.271  Sum_probs=122.6

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC----CCeE
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDVA  152 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~----~~~g  152 (255)
                      |+++|+++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++....    ...+
T Consensus         1 l~l~~v~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGK--QT--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG   73 (223)
T ss_pred             CEEEeEEEEECC--EE--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence            468999999986  33  5599999999999999999999999999999999998   99998 44443211    1233


Q ss_pred             EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                      + +..+.. .. ..+++.++........+    .....+..+++.+++.  .+..+..||+||+||+++|++++.+|+++
T Consensus        74 ~-~~q~~~-~~-~~~t~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll  146 (223)
T TIGR03740        74 S-LIESPP-LY-ENLTARENLKVHTTLLG----LPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL  146 (223)
T ss_pred             E-EcCCCC-cc-ccCCHHHHHHHHHHHcC----CCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3 322221 11 12455555543332222    1234567788888876  35667899999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||||++||+.+++.+.+++.+
T Consensus       147 llDEP~~~LD~~~~~~l~~~L~~  169 (223)
T TIGR03740       147 ILDEPTNGLDPIGIQELRELIRS  169 (223)
T ss_pred             EECCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999875

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9.8e-31  Score=224.92  Aligned_cols=168  Identities=17%  Similarity=0.131  Sum_probs=122.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH---hcccCC--CCCc-cCCCCCC-C
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR---INKIWP--QKAS-SFDSQVK-P  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl---l~~~~p--~~G~-~~~~~~~-~  148 (255)
                      ++|+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+   .+   |  ++|+ .+++... .
T Consensus         2 ~~l~~~~~~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~---~~~~~G~i~~~g~~~~~   74 (250)
T PRK14245          2 VKIDARDVNFWYGD--FH--ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIP---ATRLEGEIRIDGRNIYD   74 (250)
T ss_pred             cEEEEEEEEEEECC--Ee--EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccC---CCCCceEEEECCEeccc
Confidence            57999999999986  33  55999999999999999999999999999999997   33   3  4898 4444221 1


Q ss_pred             ---------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       149 ---------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                               ..+++ +.++.. +..  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+|
T Consensus        75 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G  150 (250)
T PRK14245         75 KGVQVDELRKNVGM-VFQRPN-PFP--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGG  150 (250)
T ss_pred             ccccHHHHhhheEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHH
Confidence                     12444 333322 111  255555544332222211 11223456777777763      34667899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus       151 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14245        151 QQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL  192 (250)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=3.9e-31  Score=248.39  Aligned_cols=168  Identities=18%  Similarity=0.171  Sum_probs=125.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||++.|++  +.  +|+|+||+|.+|+++||+||||||||||+|+|+|+++   |++|+ .+++...       
T Consensus         3 ~~i~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   75 (501)
T PRK10762          3 ALLQLKGIDKAFPG--VK--ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS   75 (501)
T ss_pred             ceEEEeeeEEEeCC--eE--EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            47999999999986  34  5599999999999999999999999999999999998   99999 4544211       


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhc---C-CCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---~-~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~l  219 (255)
                        ...+++ +.++.. +. ..+++.+++.+.....   + .........+.++++.+++..  +.++..|||||+||+++
T Consensus        76 ~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  152 (501)
T PRK10762         76 SQEAGIGI-IHQELN-LI-PQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI  152 (501)
T ss_pred             HHhCCEEE-EEcchh-cc-CCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence              123454 443322 11 1245555544322111   1 000111234567788888753  56788999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|+.+|++|||||||++||+..+..+.+++.+
T Consensus       153 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  186 (501)
T PRK10762        153 AKVLSFESKVIIMDEPTDALTDTETESLFRVIRE  186 (501)
T ss_pred             HHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998875

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9.4e-31  Score=227.45  Aligned_cols=170  Identities=15%  Similarity=0.111  Sum_probs=121.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~-----  147 (255)
                      .+|+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||+++|+|+++..  +|++|+ .+++...     
T Consensus        12 ~~l~i~nl~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~   87 (269)
T PRK14259         12 IIISLQNVTISYGT--FE--AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV   87 (269)
T ss_pred             ceEEEEeEEEEECC--EE--EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence            57999999999986  33  559999999999999999999999999999999997410  137898 4444211     


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcccccc
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqr  216 (255)
                           ...+++ +.++.. ++.  .++.+++.+.....++. .........+++.+++.      .+.++..||+||+||
T Consensus        88 ~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  162 (269)
T PRK14259         88 DPVEVRRRIGM-VFQQPN-PFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR  162 (269)
T ss_pred             CHHHHhhceEE-EccCCc-cch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence                 112444 333321 111  24555544332222221 11123345566666542      356778999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~  200 (269)
T PRK14259        163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL  200 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=226.36  Aligned_cols=174  Identities=14%  Similarity=0.145  Sum_probs=121.5

Q ss_pred             cCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC--
Q 025293           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK--  147 (255)
Q Consensus        73 ~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~--  147 (255)
                      ...++|+++|+++.|++  +.  +|+|+||+|++||++||+|+||||||||+++|+|+....  .|++|+ .+++...  
T Consensus        17 ~~~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~   92 (268)
T PRK14248         17 AKEHILEVKDLSIYYGE--KR--AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILD   92 (268)
T ss_pred             CCCceEEEEEEEEEeCC--ce--eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccc
Confidence            34468999999999986  33  559999999999999999999999999999999985200  147898 4443211  


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ....++ +.++.. .+.  .++.++........+... ........+.++.+++.      .+.++..||+|
T Consensus        93 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  168 (268)
T PRK14248         93 SNINVVNLRREIGM-VFQKPN-PFP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGG  168 (268)
T ss_pred             ccccHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHH
Confidence                    112444 333322 111  244444433222111111 11112345566666552      34678899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus       169 q~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  210 (268)
T PRK14248        169 QQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITEL  210 (268)
T ss_pred             HHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=7.6e-31  Score=228.94  Aligned_cols=172  Identities=13%  Similarity=0.142  Sum_probs=126.2

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||++.|++.. ...+++|+||+|.+||+++|+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   78 (277)
T PRK13642          3 KILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN   78 (277)
T ss_pred             ceEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence            3799999999997421 1125699999999999999999999999999999999998   99999 4544321       


Q ss_pred             -CCCeEEEEecCCC-CCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 -~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       ...+|+ +.++.. .+.  ..++.+++.+.....+.........+..+++.+++.  .+.++..||+||+||+++|++|
T Consensus        79 ~~~~i~~-v~q~~~~~~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL  155 (277)
T PRK13642         79 LRRKIGM-VFQNPDNQFV--GATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII  155 (277)
T ss_pred             HhcceEE-EEECHHHhhc--cCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence             123455 444321 111  145666654433222221111123345677777664  4567889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+|++||+||||++||+.++..+.++|.+.
T Consensus       156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l  186 (277)
T PRK13642        156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEI  186 (277)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998653

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.97  E-value=8.1e-31  Score=226.96  Aligned_cols=169  Identities=16%  Similarity=0.144  Sum_probs=123.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC---Cc-cCCCCCC-C--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVK-P--  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~---G~-~~~~~~~-~--  148 (255)
                      ++|+++||++.|++  +.  +++++||+|.+||+++|+||||||||||+++|+|+++   |+.   |+ .+++... .  
T Consensus         3 ~~l~~~nl~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~   75 (262)
T PRK09984          3 TIIRVEKLAKTFNQ--HQ--ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG   75 (262)
T ss_pred             cEEEEeeEEEEeCC--eE--EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence            58999999999986  34  5599999999999999999999999999999999997   764   77 4444221 1  


Q ss_pred             ----------CCeEEEEecCCCCCCCccCCcccChHHHHHh--------cCCCCCccHHHHHHHHHhhccc--CCccCCC
Q 025293          149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS  208 (255)
Q Consensus       149 ----------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~  208 (255)
                                ...++ +..+...+  ..+++.+++.+....        .+.........+.++++.+++.  .+..+..
T Consensus        76 ~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  152 (262)
T PRK09984         76 RLARDIRKSRANTGY-IFQQFNLV--NRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST  152 (262)
T ss_pred             ccchhHHHHHhheEE-Eccccccc--cCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence                      12344 33332211  124555544332110        0001111223456788888775  3577889


Q ss_pred             CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus       153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  198 (262)
T PRK09984        153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDI  198 (262)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.97  E-value=6.2e-31  Score=217.19  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=112.0

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----------CCCeEEEEecCCC-CCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------PPDVATVLPMDGF-HLY  163 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----------~~~~g~~i~~~~~-~~~  163 (255)
                      +++++||+|.+||++||+||||||||||+++|+|+++   |++|+ .+++...          ...+++ +.++.. ...
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~   82 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGL-VFQDPDDQLF   82 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEE-EecChhhccc
Confidence            5599999999999999999999999999999999998   99998 4444211          112344 333321 111


Q ss_pred             CccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       164 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      .  .++.+++.+.....+.........+..+++.+++.  .+.++..||+||+||+++|++|+.+|+++|+||||++||+
T Consensus        83 ~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  160 (190)
T TIGR01166        83 A--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP  160 (190)
T ss_pred             c--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            1  35555554432222221111123456777777765  4667889999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHh
Q 025293          242 GVWKDVSSMFDE  253 (255)
Q Consensus       242 ~~~~~l~~ll~~  253 (255)
                      .+++.+.++|.+
T Consensus       161 ~~~~~~~~~l~~  172 (190)
T TIGR01166       161 AGREQMLAILRR  172 (190)
T ss_pred             HHHHHHHHHHHH
Confidence            999999999875

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.2e-30  Score=226.44  Aligned_cols=173  Identities=14%  Similarity=0.092  Sum_probs=124.6

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC---
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~---  147 (255)
                      +..+|+++||++.|++  +.  +|+|+||+|.+||++||+|+||||||||+++|+|+++..  .|++|+ .+++...   
T Consensus        17 ~~~~l~~~nl~~~~~~--~~--il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~   92 (267)
T PRK14237         17 EEIALSTKDLHVYYGK--KE--AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRK   92 (267)
T ss_pred             CCeEEEEeeEEEEECC--ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccc
Confidence            3458999999999976  34  559999999999999999999999999999999998400  037898 4444221   


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~  213 (255)
                             ...+++ +..+.. +..  .++.+++.+.....+... ......+.++++.+++.      .+.++..||+||
T Consensus        93 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~  168 (267)
T PRK14237         93 EINVYEMRKHIGM-VFQRPN-PFA--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQ  168 (267)
T ss_pred             cCChHHHhcceEE-EecCCc-ccc--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHH
Confidence                   112444 333322 211  255565554332222211 11123345667777653      356788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus       169 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  209 (267)
T PRK14237        169 QQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFEL  209 (267)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=224.02  Aligned_cols=169  Identities=14%  Similarity=0.153  Sum_probs=120.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCC-CC
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQ-VK  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~-~~  147 (255)
                      |++|+++|+++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+++   |     ++|+ .+++. +.
T Consensus         1 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          1 MNKFNIENLDLFYGE--NQ--ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             CCeEEEeccEEEECC--ee--eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence            457999999999986  34  5599999999999999999999999999999999986   5     4787 44432 11


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ...+++ +..+.. .+.  .++.+++.+.....+.... .....+.++++.+++.      .+.++..||+|
T Consensus        74 ~~~~~~~~~~~i~~-~~q~~~-~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  149 (249)
T PRK14253         74 GNIDVADLRIKVGM-VFQKPN-PFP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG  149 (249)
T ss_pred             cccchHHHHhheeE-EecCCC-cCc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence                    112444 333322 111  3554554433222222111 1112334556666542      34567899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus       150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  191 (249)
T PRK14253        150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL  191 (249)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.8e-31  Score=248.04  Aligned_cols=169  Identities=17%  Similarity=0.176  Sum_probs=125.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCCc-cCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p--~~G~-~~~~~~~----  147 (255)
                      +++|+++||++.|++  +.  +++|+||+|++||+++|+||||||||||+|+|+|+++   |  ++|+ .+++...    
T Consensus         3 ~~~l~~~nl~~~~~~--~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~   75 (506)
T PRK13549          3 EYLLEMKNITKTFGG--VK--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN   75 (506)
T ss_pred             CceEEEeeeEEEeCC--eE--eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence            358999999999986  33  5599999999999999999999999999999999996   6  7998 4444221    


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--C-CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccch
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv  217 (255)
                           ...+|+ +.++.. ++ ..+++.+++.+.....  + .........+.++++.+++.  .+.++..||||||||+
T Consensus        76 ~~~~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  152 (506)
T PRK13549         76 IRDTERAGIAI-IHQELA-LV-KELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV  152 (506)
T ss_pred             HHHHHHCCeEE-EEeccc-cC-CCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence                 123555 443322 11 1245555544322111  1 11111123456788888875  3677889999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++|+.+|++|||||||++||+..+..+.++|.+
T Consensus       153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  188 (506)
T PRK13549        153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRD  188 (506)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=3.8e-31  Score=211.11  Aligned_cols=165  Identities=16%  Similarity=0.168  Sum_probs=120.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCC--
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD--  150 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~--  150 (255)
                      ||.+++|.+.|+...      -.++++|+.||+++|+|||||||||||++|+|+..   |.+|+ .+++...   .|.  
T Consensus         1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R   71 (231)
T COG3840           1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER   71 (231)
T ss_pred             CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence            467889999998733      56789999999999999999999999999999998   99998 4444321   111  


Q ss_pred             -eEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          151 -VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       151 -~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                       +.. +++.+..+  ..+++.+|+..... =++ -...+...+..++..+++.  .++.+.+|||||||||++||+|+.+
T Consensus        72 PVSm-lFQEnNLF--aHLtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~  147 (231)
T COG3840          72 PVSM-LFQENNLF--AHLTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVRE  147 (231)
T ss_pred             Chhh-hhhccccc--hhhhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhcc
Confidence             111 22222111  12455443322110 001 0122345567788888876  4677889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      -+||+|||||+.|||.-+.++..++...
T Consensus       148 ~PilLLDEPFsALdP~LR~eMl~Lv~~l  175 (231)
T COG3840         148 QPILLLDEPFSALDPALRAEMLALVSQL  175 (231)
T ss_pred             CCeEEecCchhhcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988654

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-30  Score=221.45  Aligned_cols=146  Identities=16%  Similarity=0.234  Sum_probs=120.1

Q ss_pred             CCeEEecCchheehhhhc-----ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCC
Q 025293           75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP  149 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~-----~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~  149 (255)
                      +.+++++||+|.|.....     .+.+++||||+|++||++||+|+||||||||-|+|+|+++   |++|          
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G----------   68 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSG----------   68 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCc----------
Confidence            468999999999965211     2568899999999999999999999999999999999996   6666          


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                         . |.+.|.++..  +.               .......+.++++.+++.   ..+++++|||||+||+.|||||+.+
T Consensus        69 ---~-i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~  127 (268)
T COG4608          69 ---E-ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN  127 (268)
T ss_pred             ---e-EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence               3 5556654321  11               112234577888888876   4689999999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++++|||++.||...+.++.+++.+.
T Consensus       128 P~liV~DEpvSaLDvSiqaqIlnLL~dl  155 (268)
T COG4608         128 PKLIVADEPVSALDVSVQAQILNLLKDL  155 (268)
T ss_pred             CcEEEecCchhhcchhHHHHHHHHHHHH
Confidence            9999999999999999999999998764

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=223.78  Aligned_cols=172  Identities=14%  Similarity=0.112  Sum_probs=122.1

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~----  147 (255)
                      |..|+++||++.|++  +.  +++|+||+|++||+++|+||||||||||+++|+|+.+.  ..|++|+ .+++...    
T Consensus         1 ~~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~   76 (250)
T PRK14240          1 MGKISVKDLDLFYGD--FQ--ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD   76 (250)
T ss_pred             CCeEEEEEEEEEECC--ce--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            346899999999986  33  55999999999999999999999999999999998740  0016898 4444221    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k  214 (255)
                            ...+++ +..+.. ...  .++.++..+.....+... ........++++.+++.      .+.++..||+||+
T Consensus        77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  152 (250)
T PRK14240         77 IDVNQLRKRVGM-VFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ  152 (250)
T ss_pred             cchHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence                  112444 333321 111  355555544333222211 11123345566666542      3567889999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  192 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL  192 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988653

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=1.4e-30  Score=216.11  Aligned_cols=161  Identities=13%  Similarity=0.085  Sum_probs=118.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C---CCe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P---PDV  151 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~---~~~  151 (255)
                      +|+++|+++.|++  +.+  ++ +||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++... .   ...
T Consensus         1 ~l~~~~l~~~~~~--~~l--~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~   72 (195)
T PRK13541          1 MLSLHQLQFNIEQ--KNL--FD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC   72 (195)
T ss_pred             CeEEEEeeEEECC--cEE--EE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence            4789999999975  332  35 999999999999999999999999999999998   99998 4444221 1   112


Q ss_pred             EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      ++ +.......  ...++.+++.+.....+     .......+++.+++.  .+..+..||+||+||+++|++++.+|++
T Consensus        73 ~~-~~~~~~~~--~~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~  144 (195)
T PRK13541         73 TY-IGHNLGLK--LEMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL  144 (195)
T ss_pred             Ee-ccCCcCCC--ccCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            32 22211111  11355555543322211     123455666777664  3567789999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+||||++||+..++.+.+++.+
T Consensus       145 lllDEP~~~LD~~~~~~l~~~l~~  168 (195)
T PRK13541        145 WLLDEVETNLSKENRDLLNNLIVM  168 (195)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999998863

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.4e-30  Score=228.04  Aligned_cols=172  Identities=13%  Similarity=0.122  Sum_probs=124.8

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC---
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~---  147 (255)
                      +.++|+++||++.|++  +.  +|+|+||+|.+||+++|+||||||||||+++|+|+++..  .|++|+ .+++...   
T Consensus        36 ~~~~l~i~~l~~~~~~--~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~  111 (285)
T PRK14254         36 GETVIEARDLNVFYGD--EQ--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDA  111 (285)
T ss_pred             CCceEEEEEEEEEECC--Ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccc
Confidence            3468999999999976  33  559999999999999999999999999999999998400  037898 4443211   


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k  214 (255)
                             ....++ +.++.. ++.  .++.+++.+.....+... .....+..+++.+++.      .+.++..||+||+
T Consensus       112 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~  186 (285)
T PRK14254        112 DVDPVALRRRIGM-VFQKPN-PFP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQ  186 (285)
T ss_pred             ccchHhhhccEEE-EecCCc-cCc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHH
Confidence                   112344 333322 111  245555544333222221 1223456677777653      3567889999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       187 qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~  226 (285)
T PRK14254        187 QRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL  226 (285)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.97  E-value=1.1e-30  Score=222.24  Aligned_cols=166  Identities=16%  Similarity=0.142  Sum_probs=123.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++||++.|++  +.  +++|+||+|.+|++++|+|+||||||||+++|+|+++   |+.|+ .+++...      ...
T Consensus         1 l~~~~l~~~~~~--~~--il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03300           1 IELENVSKFYGG--FV--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP   73 (232)
T ss_pred             CEEEeEEEEeCC--ee--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence            468999999986  34  5599999999999999999999999999999999998   99998 4444211      123


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .+. +..+...+.  .+++.++..+.....+.........+..+++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (232)
T cd03300          74 VNT-VFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK  150 (232)
T ss_pred             eEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            444 333322111  235555544333222221111223456677777775  356678999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.+++.+.+++.+
T Consensus       151 llllDEP~~gLD~~~~~~l~~~l~~  175 (232)
T cd03300         151 VLLLDEPLGALDLKLRKDMQLELKR  175 (232)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.97  E-value=7.7e-31  Score=222.17  Aligned_cols=162  Identities=15%  Similarity=0.110  Sum_probs=119.8

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEe
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (255)
                      +.++++++.|++  +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++....    . ..
T Consensus        23 l~~~~~~~~~~~--~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~----~-~~   90 (224)
T cd03220          23 LGILGRKGEVGE--FW--ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSS----L-LG   90 (224)
T ss_pred             hhhhhhhhhcCC--eE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEch----h-hc
Confidence            788999999988  44  5599999999999999999999999999999999997   89997 34432110    0 00


Q ss_pred             cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      . +..+ ...+++.++........+............+++.+++.  .+..+..||+||+||+++|++++.+|+++|+||
T Consensus        91 ~-~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE  168 (224)
T cd03220          91 L-GGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDE  168 (224)
T ss_pred             c-cccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            0 0111 11245556555443333221111122345667776665  356788999999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHh
Q 025293          235 NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++||+.++..+.+++.+
T Consensus       169 P~~gLD~~~~~~~~~~l~~  187 (224)
T cd03220         169 VLAVGDAAFQEKCQRRLRE  187 (224)
T ss_pred             CcccCCHHHHHHHHHHHHH
Confidence            9999999999999998875

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.97  E-value=6.8e-31  Score=221.81  Aligned_cols=171  Identities=19%  Similarity=0.151  Sum_probs=124.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++|+++.|++..+...+++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL   77 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence            47899999999742111225699999999999999999999999999999999998   99998 4544321        


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                         ...+++ +..+.. ++ ...++.++..+...... .........+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        78 ~~~~~~i~~-~~q~~~-~~-~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar  154 (220)
T TIGR02982        78 VQLRRNIGY-IFQAHN-LL-GFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR  154 (220)
T ss_pred             HHHHhheEE-EcCChh-hc-CCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence               112444 332221 11 12455555544332221 11111123456788888875  35677899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+|+++|+|||+++||+.+++.+.++|.+
T Consensus       155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~  186 (220)
T TIGR02982       155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQK  186 (220)
T ss_pred             HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998865

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=223.33  Aligned_cols=169  Identities=15%  Similarity=0.168  Sum_probs=123.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      +++++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|++....|++|+ .+++...        
T Consensus         2 ~~~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          2 IAKTTNLNLFYGK--KQ--ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             ceeeeeeEEEECC--Ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            5789999999986  33  559999999999999999999999999999999997300158998 4444221        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC--CccHHHHHHHHHhhccc------CCccCCCCCcccccchhh
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqrv~l  219 (255)
                      ...+++ +..+.. .+.  .++.+++.+.....+...  ......+.++++.+++.      .+.++..||+||+||+++
T Consensus        78 ~~~i~~-~~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  153 (246)
T PRK14269         78 RKNVGM-VFQQPN-VFV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI  153 (246)
T ss_pred             hhhEEE-EecCCc-ccc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence            123454 443322 221  355555544322222211  11223456778888774      345678999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++++.+|+++|+||||++||+.++..+.++|.+
T Consensus       154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  187 (246)
T PRK14269        154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKE  187 (246)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999875

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.97  E-value=9.9e-31  Score=225.67  Aligned_cols=167  Identities=14%  Similarity=0.114  Sum_probs=122.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         2 l~~~~l~~~~~~--~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (256)
T TIGR03873         2 LRLSRVSWSAGG--RL--IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA   74 (256)
T ss_pred             ceEEeEEEEECC--EE--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence            578999999986  34  5599999999999999999999999999999999998   99998 4544221        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHH-h---cCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                      ...++ +..... .. ...++.+++.+... .   ...........+.++++.+++.  .+.++..||+||+||+++|++
T Consensus        75 ~~i~~-~~q~~~-~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  151 (256)
T TIGR03873        75 RRVAL-VEQDSD-TA-VPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA  151 (256)
T ss_pred             hheEE-ecccCc-cC-CCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            12343 333221 11 11355555443211 1   1111111223456778877775  366788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|+++|+||||++||+.++..+.++|.+.
T Consensus       152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  183 (256)
T TIGR03873       152 LAQEPKLLLLDEPTNHLDVRAQLETLALVREL  183 (256)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.97  E-value=8.5e-31  Score=227.23  Aligned_cols=168  Identities=13%  Similarity=0.175  Sum_probs=122.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------  147 (255)
                      .+|+++||++.|++  +.  +|+|+||+|.+|++++|+||||||||||+++|+|+++   |++|+ .+++. +.      
T Consensus         6 ~~l~i~~l~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   78 (265)
T PRK10253          6 ARLRGEQLTLGYGK--YT--VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASKE   78 (265)
T ss_pred             cEEEEEEEEEEECC--EE--EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHHH
Confidence            57999999999986  33  5599999999999999999999999999999999998   99998 44442 11      


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHH-HhcCC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                       ...+++ +..+...+.  ..++.++..... .....   ........+.++++.+++.  .+.++..||+||+||+++|
T Consensus        79 ~~~~i~~-v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~la  155 (265)
T PRK10253         79 VARRIGL-LAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIA  155 (265)
T ss_pred             HhhheEE-eeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHH
Confidence             112444 333322111  134433332210 00000   0011123456777777775  4678889999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++++.+|+++|+||||++||+.++..+.++|.+
T Consensus       156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~  188 (265)
T PRK10253        156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSE  188 (265)
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998865

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.97  E-value=4.4e-31  Score=216.06  Aligned_cols=144  Identities=23%  Similarity=0.321  Sum_probs=105.0

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      |+++|+++.|++  ++  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+              +.+
T Consensus         1 i~~~~l~~~~~~--~~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~--------------i~~   59 (178)
T cd03229           1 LELKNVSKRYGQ--KT--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGS--------------ILI   59 (178)
T ss_pred             CEEEEEEEEECC--eE--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceE--------------EEE
Confidence            468999999976  34  4599999999999999999999999999999999986   66663              334


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~  236 (255)
                      ++.....  .+  ..........++ ++........++.+++.+.       ||+||+||+++|++++.+|+++|+||||
T Consensus        60 ~g~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP~  128 (178)
T cd03229          60 DGEDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEPT  128 (178)
T ss_pred             CCEEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCCc
Confidence            4432210  00  000111122222 2222111123455555433       9999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHh
Q 025293          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+.++..+.+++.+
T Consensus       129 ~~LD~~~~~~l~~~l~~  145 (178)
T cd03229         129 SALDPITRREVRALLKS  145 (178)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999999999999875

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=250.39  Aligned_cols=175  Identities=16%  Similarity=0.191  Sum_probs=130.0

Q ss_pred             CCeEEecCchheehhhh-------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-
Q 025293           75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-  145 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~-------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-  145 (255)
                      .++|+++||++.|+...       ....+++|+||+|++||++||+|+||||||||+|+|+|+++   |++|+ .+++. 
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~  387 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR  387 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence            36899999999996210       01225699999999999999999999999999999999998   99999 45543 


Q ss_pred             CC----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293          146 VK----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       146 ~~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---~~~~~~~lS~  211 (255)
                      +.          ...+++ +.++.+......+++.+++.+.....+.. .......+.++++.+++.   .+.++..|||
T Consensus       388 i~~~~~~~~~~~~~~i~~-v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg  466 (623)
T PRK10261        388 IDTLSPGKLQALRRDIQF-IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG  466 (623)
T ss_pred             CCcCCHHHHHHhcCCeEE-EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence            11          123555 55543211122245655554433222321 111224567788888884   4678899999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||+||++|+.+|++||+||||++||+..+.++.++|.+
T Consensus       467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~  508 (623)
T PRK10261        467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD  508 (623)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999965

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.97  E-value=5e-31  Score=219.94  Aligned_cols=156  Identities=13%  Similarity=0.072  Sum_probs=106.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      .+.++||+|.|+.......+++++||+|++|++++|+||||||||||+++|+|+++...|++|+              +.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~--------------i~   68 (202)
T cd03233           3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD--------------IH   68 (202)
T ss_pred             eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE--------------EE
Confidence            5789999999975311122569999999999999999999999999999999998400023443              33


Q ss_pred             cCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                      +++.....  .     ........++ +++.......++.+++.+.    .+.++..||+||+||+++|++|+.+|+++|
T Consensus        69 i~g~~~~~--~-----~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lll  141 (202)
T cd03233          69 YNGIPYKE--F-----AEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVRGISGGERKRVSIAEALVSRASVLC  141 (202)
T ss_pred             ECCEECcc--c-----hhhhcceEEEEecccccCCCCcHHHHHhhhhhhccccchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence            34332110  0     0000111111 1111111112233332221    456778999999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||++||+..++.+.+++.+
T Consensus       142 lDEPt~~LD~~~~~~~~~~l~~  163 (202)
T cd03233         142 WDNSTRGLDSSTALEILKCIRT  163 (202)
T ss_pred             EcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=222.31  Aligned_cols=172  Identities=12%  Similarity=0.101  Sum_probs=121.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~-----  147 (255)
                      ..|+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++  ...|++|+ .+++...     
T Consensus         3 ~~l~~~nl~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          3 NKVKLEQLNVHFGK--NH--AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             cEEEEEEEEEEeCC--ee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            46899999999986  33  5599999999999999999999999999999999973  00125888 4444211     


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc------CCccCCCCCccccc
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kq  215 (255)
                           ...+++ +..+...+.  ..++.+++.......+.. .......+.++++.+++.      .+..+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (252)
T PRK14256         79 DPVSIRRRVGM-VFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ  155 (252)
T ss_pred             ChHHhhccEEE-EecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence                 112444 333322111  235555554322222211 111123355667777753      24567899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus       156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~  194 (252)
T PRK14256        156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL  194 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.97  E-value=1.4e-30  Score=218.85  Aligned_cols=160  Identities=16%  Similarity=0.199  Sum_probs=117.6

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (255)
                      +++ ||+|.|++.  .  +  |+||+|++ |+++|+||||||||||+++|+|+++   |++|+ .+++...         
T Consensus         2 ~~~-~l~~~~~~~--~--~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   70 (214)
T cd03297           2 LCV-DIEKRLPDF--T--L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL   70 (214)
T ss_pred             cee-eeeEecCCe--e--e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence            445 999999873  2  3  99999999 9999999999999999999999998   99998 4444211         


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~  222 (255)
                         ....++ +..... ++ ..+++.++..+.....  ........+.++++.+++..  +.++..||+||+||+++|++
T Consensus        71 ~~~~~~i~~-~~q~~~-~~-~~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  145 (214)
T cd03297          71 PPQQRKIGL-VFQQYA-LF-PHLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARA  145 (214)
T ss_pred             hhHhhcEEE-EecCCc-cC-CCCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHH
Confidence               112444 333322 11 1235545443322111  11112234567888887753  56788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|+++|+||||++||+.+++.+.+++.+
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  176 (214)
T cd03297         146 LAAQPELLLLDEPFSALDRALRLQLLPELKQ  176 (214)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.9e-30  Score=222.12  Aligned_cols=167  Identities=14%  Similarity=0.149  Sum_probs=120.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCC--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK--  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~--  147 (255)
                      ++|+++||++.|++  +.  +++|+||+|.+|+++||+||||||||||+++|+|+++   |+     +|+ .+++...  
T Consensus         3 ~~l~~~~l~~~~~~--~~--il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~   75 (251)
T PRK14249          3 PKIKIRGVNFFYHK--HQ--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS   75 (251)
T ss_pred             ceEEEEEEEEEECC--ee--EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence            57899999999986  33  5599999999999999999999999999999999997   76     587 3443211  


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ...+++ +..+.. ...  .++.+++.+.....+... ......+..+++.+++.      .+..+..||+|
T Consensus        76 ~~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  151 (251)
T PRK14249         76 PNLDVVNLRKRVGM-VFQQPN-PFP--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG  151 (251)
T ss_pred             cccChHHhhceEEE-EecCCc-cCc--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence                    122444 333322 111  245555544332222211 11112334455555542      35678899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  192 (251)
T PRK14249        152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE  192 (251)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998865

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.97  E-value=1.2e-30  Score=245.52  Aligned_cols=165  Identities=18%  Similarity=0.157  Sum_probs=124.7

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      +++|+++||++.|++  +.  +|+|+||+|++|+++||+||||||||||||+|+|+++   |++|+ .+++... .    
T Consensus         9 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   81 (510)
T PRK15439          9 PPLLCARSISKQYSG--VE--VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTPA   81 (510)
T ss_pred             CceEEEEeEEEEeCC--ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHH
Confidence            458999999999986  33  5599999999999999999999999999999999998   99999 4444211 1    


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                          ..+|+ +.++.. +. ..+++.+++.+...    ........+.++++.+++.  .+.++..||||||||+++|++
T Consensus        82 ~~~~~~i~~-v~q~~~-~~-~~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  154 (510)
T PRK15439         82 KAHQLGIYL-VPQEPL-LF-PNLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRG  154 (510)
T ss_pred             HHHhCCEEE-EeccCc-cC-CCCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHH
Confidence                12454 343322 11 12344443322110    1111223456788888875  357788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++||+||||++||+.++..+.++|.+
T Consensus       155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (510)
T PRK15439        155 LMRDSRILILDEPTASLTPAETERLFSRIRE  185 (510)
T ss_pred             HHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=1.7e-30  Score=245.51  Aligned_cols=174  Identities=16%  Similarity=0.194  Sum_probs=124.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK--  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~--  147 (255)
                      ++|+++||++.|++......+++|+||+|.+||++||+||||||||||+|+|+|+++   |     ++|+ .+++...  
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~   80 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH   80 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence            579999999999631011125699999999999999999999999999999999996   5     6898 4444211  


Q ss_pred             ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhcccC-----CccCCCCCc
Q 025293          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH  211 (255)
Q Consensus       148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~-----~~~~~~lS~  211 (255)
                                ...+|+ +.++.........++.++....... .+.........+.++++.+++..     +.++..|||
T Consensus        81 ~~~~~~~~~~~~~ig~-v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg  159 (529)
T PRK15134         81 ASEQTLRGVRGNKIAM-IFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG  159 (529)
T ss_pred             CCHHHHHHHhcCceEE-EecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence                      023555 4444221111112333333222111 12222222345677888888852     667899999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+|||+||++|+.+|++||+||||++||+..+..+.+++.+
T Consensus       160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~  201 (529)
T PRK15134        160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE  201 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1e-30  Score=246.03  Aligned_cols=169  Identities=15%  Similarity=0.130  Sum_probs=124.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      ++|+++|+++.|++  +.  +++|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++... .     
T Consensus         4 ~~l~~~~l~~~~~~--~~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   76 (510)
T PRK09700          4 PYISMAGIGKSFGP--VH--ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL   76 (510)
T ss_pred             ceEEEeeeEEEcCC--eE--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence            57999999999986  34  5599999999999999999999999999999999998   99999 4444221 1     


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHH----hcCCC---CCccHHHHHHHHHhhccc--CCccCCCCCcccccc
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP  216 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~----~~~~~---~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqr  216 (255)
                         ..+|+ +.++....  ..+++.+++.+...    ..+..   .......+.++++.+++.  .+.++..|||||+||
T Consensus        77 ~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr  153 (510)
T PRK09700         77 AAQLGIGI-IYQELSVI--DELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM  153 (510)
T ss_pred             HHHCCeEE-Eeeccccc--CCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence               12454 33332211  12354444432111    01110   001123456778888875  367788999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l  191 (510)
T PRK09700        154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL  191 (510)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=222.20  Aligned_cols=167  Identities=13%  Similarity=0.141  Sum_probs=118.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCC---
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK---  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~---  147 (255)
                      +|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+|+|+|+++   |+     +|+ .+++...   
T Consensus         4 ~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~   76 (252)
T PRK14272          4 LLSAQDVNIYYGD--KQ--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP   76 (252)
T ss_pred             EEEEeeeEEEECC--EE--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence            7899999999986  34  5599999999999999999999999999999999986   64     788 4444211   


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhcc------cCCccCCCCCccc
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV  213 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~------~~~~~~~~lS~G~  213 (255)
                             ....++ +..+...+  ..+++.+++.......+.... ........+++.+++      ..+.++..||+||
T Consensus        77 ~~~~~~~~~~i~~-~~q~~~~~--~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~  153 (252)
T PRK14272         77 RVDPVAMRRRVGM-VFQKPNPF--PTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ  153 (252)
T ss_pred             ccCHHHhhceeEE-EeccCccC--cCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence                   112444 33332211  124555555433222221111 111223344444433      1356788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus       154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  193 (252)
T PRK14272        154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD  193 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.97  E-value=1.1e-30  Score=212.66  Aligned_cols=140  Identities=17%  Similarity=0.227  Sum_probs=104.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      |+++|+++.|++..+.  +++++||+|++||+++|+||||||||||+++|+|+++   |++|+              +.+
T Consensus         1 i~~~~l~~~~~~~~~~--~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~   61 (173)
T cd03246           1 LEVENVSFRYPGAEPP--VLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGR--------------VRL   61 (173)
T ss_pred             CEEEEEEEEcCCCCCc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCe--------------EEE
Confidence            4689999999752222  5699999999999999999999999999999999996   66663              344


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~  236 (255)
                      ++.....  .+    ........++ +++..... .++.+++          ||+||+||+++|++++.+|+++|+||||
T Consensus        62 ~g~~~~~--~~----~~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt  124 (173)
T cd03246          62 DGADISQ--WD----PNELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN  124 (173)
T ss_pred             CCEEccc--CC----HHHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            4432211  01    1111222333 33322222 2555555          9999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHh
Q 025293          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..+..+.+++.+
T Consensus       125 ~~LD~~~~~~l~~~l~~  141 (173)
T cd03246         125 SHLDVEGERALNQAIAA  141 (173)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99999999999999865

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.7e-30  Score=222.27  Aligned_cols=171  Identities=16%  Similarity=0.148  Sum_probs=122.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~-----  147 (255)
                      ++|+++|+++.|+.  ++  +++|+||+|++||+++|+|+||||||||+++|+|+++  ...|++|+ .+++...     
T Consensus         3 ~~l~~~~l~~~~~~--~~--~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          3 NIISAKDVHLSYGN--YE--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             ceEEEEeeEEEECC--ee--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence            47899999999976  34  5599999999999999999999999999999999984  00126888 4444211     


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCccccc
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kq  215 (255)
                           ...+++ +..+.. ...  .++.++..+.....+... ......+..+++.+++.      .+..+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q  154 (251)
T PRK14251         79 DLVELRKEVGM-VFQQPT-PFP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ  154 (251)
T ss_pred             hHHHhhccEEE-EecCCc-cCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence                 112343 333322 221  355555544332222211 11122345667766652      35677899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+++|+||||++||+.++..+.+++.+.
T Consensus       155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  193 (251)
T PRK14251        155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMEL  193 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.97  E-value=1.9e-30  Score=221.32  Aligned_cols=165  Identities=13%  Similarity=0.153  Sum_probs=123.3

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++|+++.|++  +   +++|+||+|.+||+++|+|+||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 l~~~~l~~~~~~--~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~   72 (235)
T cd03299           1 LKVENLSKDWKE--F---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD   72 (235)
T ss_pred             CeeEeEEEEeCC--c---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence            468899999975  2   4699999999999999999999999999999999998   99998 4444211      123


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      ++. +..+...+  ..+++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|++++.+|+
T Consensus        73 i~~-~~q~~~~~--~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  149 (235)
T cd03299          73 ISY-VPQNYALF--PHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK  149 (235)
T ss_pred             EEE-EeecCccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence            454 33332221  1245555554433222221111223456778887775  456778999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+||||++||+.+++.+.+++.+
T Consensus       150 llllDEPt~gLD~~~~~~l~~~l~~  174 (235)
T cd03299         150 ILLLDEPFSALDVRTKEKLREELKK  174 (235)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998865

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=233.75  Aligned_cols=158  Identities=15%  Similarity=0.144  Sum_probs=120.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ||++ ||+|.|++  +   . .|+||+|++||+++|+|||||||||||++|+|+++   |++|+ .+++...        
T Consensus         1 ~l~~-~l~k~~~~--~---~-~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~   70 (352)
T PRK11144          1 MLEL-NFKQQLGD--L---C-LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC   70 (352)
T ss_pred             CeEE-EEEEEeCC--E---E-EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence            4778 99999986  2   1 38999999999999999999999999999999998   99998 4444211        


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                          ...+|+ +.++.. ++ ..+++.+++.+...      ......+.++++.+++.  .+.++..|||||+||+++|+
T Consensus        71 ~~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar  141 (352)
T PRK11144         71 LPPEKRRIGY-VFQDAR-LF-PHYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR  141 (352)
T ss_pred             cchhhCCEEE-EcCCcc-cC-CCCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence                123444 333322 21 12455555443211      11234567788888876  36778899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+.+|++|||||||++||+..+..+.++|.+
T Consensus       142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~  173 (352)
T PRK11144        142 ALLTAPELLLMDEPLASLDLPRKRELLPYLER  173 (352)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998865

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=225.89  Aligned_cols=171  Identities=15%  Similarity=0.057  Sum_probs=119.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~  150 (255)
                      +|+++||++.|++. +.  +++|+||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++...     ...
T Consensus         6 ~l~~~~l~~~~~~~-~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   79 (272)
T PRK15056          6 GIVVNDVTVTWRNG-HT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL   79 (272)
T ss_pred             eEEEEeEEEEecCC-cE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence            68999999999631 33  5599999999999999999999999999999999998   99998 4444321     112


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHH-HhcCC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      +++ +..+............++..... ...+.   ...........+++.+++.  .+.++..||+||+||+++|++|+
T Consensus        80 i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~  158 (272)
T PRK15056         80 VAY-VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA  158 (272)
T ss_pred             EEE-eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            444 33321110000011122211100 00011   1111123345677777775  46778899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++||+||||++||+.+++.+.++|.+.
T Consensus       159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~  188 (272)
T PRK15056        159 QQGQVILLDEPFTGVDVKTEARIISLLREL  188 (272)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998653

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=222.97  Aligned_cols=169  Identities=15%  Similarity=0.154  Sum_probs=123.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      +.+|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+|+|+|+++   |     ++|+ .+++... 
T Consensus         5 ~~~l~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~---~~~~~~~~G~i~~~g~~i~   77 (259)
T PRK14260          5 IPAIKVKDLSFYYNT--SK--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE---LEGPVKVEGVVDFFGQNIY   77 (259)
T ss_pred             cceEEEEEEEEEECC--eE--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC---cccCCccceEEEECCEecc
Confidence            458999999999986  33  5599999999999999999999999999999999985   4     4788 4443211 


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~  211 (255)
                               ...+++ +..+.. .+.  .++.+++.......+. +.........++++.+++.      .+.++..||+
T Consensus        78 ~~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~  153 (259)
T PRK14260         78 DPRININRLRRQIGM-VFQRPN-PFP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSG  153 (259)
T ss_pred             ccccchHhhhhheEE-Eecccc-cCC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence                     113444 333322 111  3555655443222221 1111123345667766652      4567789999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  196 (259)
T PRK14260        154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSL  196 (259)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998753

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.1e-30  Score=223.58  Aligned_cols=170  Identities=14%  Similarity=0.100  Sum_probs=118.6

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~-----  147 (255)
                      ++|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|++..  ..|++|+ .+++...     
T Consensus         9 ~~l~i~~v~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~   84 (264)
T PRK14243          9 TVLRTENLNVYYGS--FL--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDV   84 (264)
T ss_pred             eEEEEeeeEEEECC--EE--EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEcccccc
Confidence            47999999999986  33  55999999999999999999999999999999998740  0126888 4444211     


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCcccccc
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqr  216 (255)
                           ...+++ +.++.. +..  .++.+++.+.....+.. .........+++.+++.      .+..+..||+||+||
T Consensus        85 ~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qr  159 (264)
T PRK14243         85 DPVEVRRRIGM-VFQKPN-PFP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQR  159 (264)
T ss_pred             ChHHHhhhEEE-EccCCc-ccc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHH
Confidence                 112444 333221 111  24444443322221211 11112234445555442      356778999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  197 (264)
T PRK14243        160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL  197 (264)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.9e-30  Score=221.48  Aligned_cols=166  Identities=18%  Similarity=0.240  Sum_probs=122.3

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++|+++.|++  +.  +++|+||+|.+|+++||+|+||||||||+++|+|+++   |++|+ .+++...      ...
T Consensus         1 i~i~~l~~~~~~--~~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~   73 (237)
T TIGR00968         1 IEIANISKRFGS--FQ--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK   73 (237)
T ss_pred             CEEEEEEEEECC--ee--eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence            478999999986  34  5599999999999999999999999999999999998   99998 4443211      112


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      .++ +..+.. ++ ...+..+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~-~~-~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (237)
T TIGR00968        74 IGF-VFQHYA-LF-KHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ  150 (237)
T ss_pred             EEE-EecChh-hc-cCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            344 332221 11 1235555554333222221111223456777777765  356678999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+|||+++||+.++..+.+++.+
T Consensus       151 llllDEP~~~LD~~~~~~~~~~l~~  175 (237)
T TIGR00968       151 VLLLDEPFGALDAKVRKELRSWLRK  175 (237)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999875

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=249.59  Aligned_cols=163  Identities=17%  Similarity=0.168  Sum_probs=122.6

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeE
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA  152 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g  152 (255)
                      +..+|+++||++.|++  +.  +|+|+||+|.+|+++||+||||||||||||+|+|+++   |++|+ .++..   ..+|
T Consensus       309 ~~~~l~~~~l~~~y~~--~~--il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~ig  378 (638)
T PRK10636        309 PNPLLKMEKVSAGYGD--RI--ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLG  378 (638)
T ss_pred             CCceEEEEeeEEEeCC--ee--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEE
Confidence            3458999999999986  33  5599999999999999999999999999999999998   99998 34321   2345


Q ss_pred             EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcE
Q 025293          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      + +.+.....    ++........  ............+..+++.+++.   .+.++..|||||||||++|++++.+|++
T Consensus       379 y-~~Q~~~~~----l~~~~~~~~~--~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~l  451 (638)
T PRK10636        379 Y-FAQHQLEF----LRADESPLQH--LARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNL  451 (638)
T ss_pred             E-ecCcchhh----CCccchHHHH--HHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCE
Confidence            4 33321110    1211111111  11111122234567888888884   3578899999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||||++||+.++..+.++|.+
T Consensus       452 LlLDEPt~~LD~~~~~~l~~~L~~  475 (638)
T PRK10636        452 LLLDEPTNHLDLDMRQALTEALID  475 (638)
T ss_pred             EEEcCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999865

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=2e-30  Score=243.03  Aligned_cols=167  Identities=11%  Similarity=0.010  Sum_probs=119.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKP-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~-----  148 (255)
                      .||+++||++.|++  +.  +|+|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++. ...     
T Consensus         2 ~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~   74 (490)
T PRK10938          2 SSLQISQGTFRLSD--TK--TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ   74 (490)
T ss_pred             ceEEEEeEEEEcCC--ee--ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence            47999999999986  33  5599999999999999999999999999999999998   99998 33332 111     


Q ss_pred             --CCeEEEEecCCCCCCCccCCcccC-h-HHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 --PDVATVLPMDGFHLYLSQLDAMED-P-KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                        ...|. +.+......   ++...+ . .......... ......+.++++.+++.  .+.++..||||||||+++|++
T Consensus        75 ~~~~i~~-~~q~~~~~~---~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~a  149 (490)
T PRK10938         75 LQKLVSD-EWQRNNTDM---LSPGEDDTGRTTAEIIQDE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQA  149 (490)
T ss_pred             HHHHhce-eccCcchhh---cccchhhccccHHHhcccc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHH
Confidence              11233 222111000   000000 0 0001111000 11223456788888875  367789999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+.++..+.++|.+.
T Consensus       150 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  181 (490)
T PRK10938        150 LMSEPDLLILDEPFDGLDVASRQQLAELLASL  181 (490)
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998763

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.96  E-value=2.5e-30  Score=243.95  Aligned_cols=167  Identities=16%  Similarity=0.176  Sum_probs=123.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCC-----------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFD-----------  143 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~-----------  143 (255)
                      |+++||++.|++  +.  +++|+||+|.+|+++||+||||||||||+|+|+|++  +   |++|+ .++           
T Consensus         1 l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~   73 (520)
T TIGR03269         1 IEVKNLTKKFDG--KE--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE   73 (520)
T ss_pred             CEEEEEEEEECC--eE--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence            478999999976  34  559999999999999999999999999999999996  6   89998 343           


Q ss_pred             ------------CC-C-------C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH
Q 025293          144 ------------SQ-V-------K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN  193 (255)
Q Consensus       144 ------------~~-~-------~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (255)
                                  +. +       .          ...+|+ +.++...+. ..+++.+++.+.....+.........+.+
T Consensus        74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~q~~~~~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~  151 (520)
T TIGR03269        74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAI-MLQRTFALY-GDDTVLDNVLEALEEIGYEGKEAVGRAVD  151 (520)
T ss_pred             cccccccccccccccccccchhhhccCHHHHHHhhhcEEE-EeccccccC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                        10 0       0          012344 333211111 12455565554333333322222345667


Q ss_pred             HHHhhcccC--CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          194 CLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       194 ~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++.+++..  +.++..|||||||||++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  213 (520)
T TIGR03269       152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE  213 (520)
T ss_pred             HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence            888888753  567899999999999999999999999999999999999999999988865

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.96  E-value=1.7e-30  Score=211.25  Aligned_cols=141  Identities=18%  Similarity=0.187  Sum_probs=105.2

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      |+++|+++.|++....  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+              +.+
T Consensus         1 l~~~~l~~~~~~~~~~--~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~--------------i~~   61 (171)
T cd03228           1 IEFKNVSFSYPGRPKP--VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGE--------------ILI   61 (171)
T ss_pred             CEEEEEEEEcCCCCcc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCE--------------EEE
Confidence            4689999999763113  5699999999999999999999999999999999996   66663              344


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~  236 (255)
                      ++.....  ..    ........++ +++..... .++.+++          ||+||+||+++|++++.+|+++|+||||
T Consensus        62 ~g~~~~~--~~----~~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~  124 (171)
T cd03228          62 DGVDLRD--LD----LESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT  124 (171)
T ss_pred             CCEEhhh--cC----HHHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            4432210  00    1111222332 33322222 3555554          9999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhh
Q 025293          237 LFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+.++..+.+++.+.
T Consensus       125 ~gLD~~~~~~l~~~l~~~  142 (171)
T cd03228         125 SALDPETEALILEALRAL  142 (171)
T ss_pred             cCCCHHHHHHHHHHHHHh
Confidence            999999999999998753

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4e-30  Score=221.51  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=121.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCCc-cCCCCC-C--
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQV-K--  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p---~~G~-~~~~~~-~--  147 (255)
                      .++|+++|+++.|++  +.  +|+|+||+|++||+++|+||||||||||+++|+|++.. .|   ++|+ .+++.. .  
T Consensus         4 ~~~i~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~   78 (253)
T PRK14261          4 EIILSTKNLNLWYGE--KH--ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDL-IPGCRITGDILYNGENIMDS   78 (253)
T ss_pred             cceEEEeeeEEEECC--ee--eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccC-CCCCCcceEEEECCEEcccc
Confidence            458999999999986  33  55999999999999999999999999999999998630 02   4788 444321 1  


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCccc
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G~  213 (255)
                             ...+++ +.+... ...  .++.+++.+.....+.... .....+.++++.+++.      .+..+..||+||
T Consensus        79 ~~~~~~~~~~i~~-~~q~~~-~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~  154 (253)
T PRK14261         79 GADVVALRRKIGM-VFQRPN-PFP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ  154 (253)
T ss_pred             ccchhhhhceEEE-EecCCc-cCc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence                   112343 333322 211  2555555543333222111 1122344566666542      356778999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++++.+|+++|+||||++||+.+++.+.++|.+.
T Consensus       155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~  195 (253)
T PRK14261        155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL  195 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.96  E-value=9.9e-31  Score=213.02  Aligned_cols=140  Identities=21%  Similarity=0.283  Sum_probs=103.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++  +.  +++++||++.+||+++|+||||||||||+++|+|+++   |++|+              +.+
T Consensus         1 l~~~~l~~~~~~--~~--~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~   59 (173)
T cd03230           1 IEVRNLSKRYGK--KT--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGE--------------IKV   59 (173)
T ss_pred             CEEEEEEEEECC--ee--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeE--------------EEE
Confidence            468999999976  33  5599999999999999999999999999999999986   66664              334


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~  236 (255)
                      ++.....  ..     .......++ +++.......++.+++.         ||+||+||+++|++|+.+|+++|+||||
T Consensus        60 ~g~~~~~--~~-----~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEPt  123 (173)
T cd03230          60 LGKDIKK--EP-----EEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEPT  123 (173)
T ss_pred             CCEEccc--ch-----HhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCCc
Confidence            4432110  00     111112222 33222111234444442         9999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHhh
Q 025293          237 LFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+.++..+.++|.+.
T Consensus       124 ~~LD~~~~~~l~~~l~~~  141 (173)
T cd03230         124 SGLDPESRREFWELLREL  141 (173)
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            999999999999998753

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.4e-30  Score=223.78  Aligned_cols=175  Identities=16%  Similarity=0.098  Sum_probs=121.2

Q ss_pred             cccCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC
Q 025293           71 QRREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK  147 (255)
Q Consensus        71 ~~~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~  147 (255)
                      .+...++|+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||+++|+|++...  .|++|+ .+++...
T Consensus        14 ~~~~~~~l~~~nl~~~~~~--~~--~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l   89 (274)
T PRK14265         14 INPDHSVFEVEGVKVFYGG--FL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNI   89 (274)
T ss_pred             cCCCCceEEEeeEEEEeCC--eE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEec
Confidence            3445679999999999986  33  559999999999999999999999999999999997400  015787 4444211


Q ss_pred             ----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc------CCccCCCCCc
Q 025293          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (255)
Q Consensus       148 ----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~  211 (255)
                                ...+++ +..+.. ++.  .++.+++.......+... .........++.+++.      .+.++..||+
T Consensus        90 ~~~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg  164 (274)
T PRK14265         90 YDSQINSVKLRRQVGM-VFQRPN-PFP--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSG  164 (274)
T ss_pred             ccccchhHHHhhcEEE-EccCCc-ccc--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCH
Confidence                      112343 333222 111  144444433222111111 1112234455555442      3567789999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       165 Gq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  207 (274)
T PRK14265        165 GQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL  207 (274)
T ss_pred             HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999753

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=3.4e-30  Score=248.09  Aligned_cols=165  Identities=16%  Similarity=0.179  Sum_probs=124.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      ..+|+++||++.|++  +.  +|+|+||+|.+|+++||+||||||||||||+|+|+++   |++|+ .++..   ..+|+
T Consensus       317 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~i~y  386 (635)
T PRK11147        317 KIVFEMENVNYQIDG--KQ--LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGTK---LEVAY  386 (635)
T ss_pred             CceEEEeeeEEEECC--eE--EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCC---cEEEE
Confidence            458999999999987  34  4599999999999999999999999999999999998   99998 34321   23555


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                       +.+....+ ...+++.+++.....  ..........+.++++.+++.   .++++..||||||||+++|++++.+|++|
T Consensus       387 -~~q~~~~l-~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL  462 (635)
T PRK11147        387 -FDQHRAEL-DPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL  462 (635)
T ss_pred             -EeCccccc-CCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence             33321111 112455444432111  111011133466788888874   36788999999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||++||+.++..+.+++.+
T Consensus       463 lLDEPt~~LD~~~~~~l~~~l~~  485 (635)
T PRK11147        463 ILDEPTNDLDVETLELLEELLDS  485 (635)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999998865

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.8e-30  Score=232.56  Aligned_cols=158  Identities=10%  Similarity=0.095  Sum_probs=119.1

Q ss_pred             CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------------C
Q 025293           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------P  148 (255)
Q Consensus        82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------------~  148 (255)
                      ||+|.|++  +   .+ |+||+|++||+++|+|||||||||||++|+|+++   |++|+ .+++...            .
T Consensus         4 ~l~~~~~~--~---~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~   74 (354)
T TIGR02142         4 RFSKRLGD--F---SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK   74 (354)
T ss_pred             EEEEEECC--E---EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence            78999986  2   23 8999999999999999999999999999999998   99998 4444211            1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ..+++ +.++.. ++ ..+++.+++.+.....  ........+.++++.+++.  .+.++..|||||+||+++|++|+.+
T Consensus        75 ~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~  149 (354)
T TIGR02142        75 RRIGY-VFQEAR-LF-PHLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS  149 (354)
T ss_pred             CCeEE-EecCCc-cC-CCCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            22444 333322 21 1256666655432211  1111223467788888876  3677889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|||||||++||+..+..+.++|.+
T Consensus       150 p~lllLDEPts~LD~~~~~~l~~~L~~  176 (354)
T TIGR02142       150 PRLLLMDEPLAALDDPRKYEILPYLER  176 (354)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999875

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=1.5e-30  Score=212.93  Aligned_cols=142  Identities=18%  Similarity=0.194  Sum_probs=107.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      |+++|+++.|++..+.  +++|+||+|++||+++|+||||||||||+++|+|+.+   |++|+              +.+
T Consensus         1 i~~~~~~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~   61 (178)
T cd03247           1 LSINNVSFSYPEQEQQ--VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGE--------------ITL   61 (178)
T ss_pred             CEEEEEEEEeCCCCcc--ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCE--------------EEE
Confidence            4789999999763113  4599999999999999999999999999999999986   66663              444


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~  236 (255)
                      ++....     ..  ....+...++ ++...... .++.+++       +..||+||+||+++|++++.+|++||+||||
T Consensus        62 ~g~~~~-----~~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~  126 (178)
T cd03247          62 DGVPVS-----DL--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT  126 (178)
T ss_pred             CCEEHH-----HH--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            443211     00  1112222333 33322222 3555555       6789999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHh
Q 025293          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..++.+.+++.+
T Consensus       127 ~~LD~~~~~~l~~~l~~  143 (178)
T cd03247         127 VGLDPITERQLLSLIFE  143 (178)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999999999999875

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.96  E-value=2.3e-30  Score=212.21  Aligned_cols=140  Identities=21%  Similarity=0.264  Sum_probs=107.7

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecC
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD  158 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~  158 (255)
                      +++||++.|++  +.  +|+++||+|++|++++|+||||||||||+++|+|+++   |++|             . +.++
T Consensus         1 ~~~~l~~~~~~--~~--~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G-------------~-v~~~   59 (180)
T cd03214           1 EVENLSVGYGG--RT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSG-------------E-ILLD   59 (180)
T ss_pred             CeeEEEEEECC--ee--eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCc-------------E-EEEC
Confidence            46899999976  33  5599999999999999999999999999999999986   6665             3 4455


Q ss_pred             CCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293          159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       159 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~  236 (255)
                      +.....  .+    ........++.        .++++.+++.  .+..+..||+||+||+++|++++.+|+++|+||||
T Consensus        60 g~~~~~--~~----~~~~~~~i~~~--------~q~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~  125 (180)
T cd03214          60 GKDLAS--LS----PKELARKIAYV--------PQALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEPT  125 (180)
T ss_pred             CEECCc--CC----HHHHHHHHhHH--------HHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            543211  01    11112222221        1156666654  34667899999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHh
Q 025293          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+.++..+.+++.+
T Consensus       126 ~~LD~~~~~~~~~~l~~  142 (180)
T cd03214         126 SHLDIAHQIELLELLRR  142 (180)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99999999999999865

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.96  E-value=2.5e-30  Score=225.06  Aligned_cols=167  Identities=14%  Similarity=0.094  Sum_probs=120.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--------CCc-cCCCCCC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQVK  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~--------~G~-~~~~~~~  147 (255)
                      ||+++||++.|++  +.  +|+|+||+|.+|++++|+||||||||||+++|+|+++   |+        +|+ .+++...
T Consensus         1 ml~~~nl~~~~~~--~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~   73 (272)
T PRK13547          1 MLTADHLHVARRH--RA--ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL   73 (272)
T ss_pred             CeEEEEEEEEECC--Ee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence            4889999999986  34  4599999999999999999999999999999999997   87        787 4444221


Q ss_pred             -C-------CCeEEEEecCCCCCCCccCCcccChHHHHHhc----CCCCCccHHHHHHHHHhhccc--CCccCCCCCccc
Q 025293          148 -P-------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (255)
Q Consensus       148 -~-------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~  213 (255)
                       .       ...++ +.++.....  .+++.+++.+.....    +............+++.+++.  .+.++..||+||
T Consensus        74 ~~~~~~~~~~~~~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  150 (272)
T PRK13547         74 AAIDAPRLARLRAV-LPQAAQPAF--AFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE  150 (272)
T ss_pred             ccCCHHHHHhhcEE-ecccCCCCC--CCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence             1       11333 333322111  134444433211000    000111223456777777775  357788999999


Q ss_pred             ccchhhhhhhc---------cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~---------~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++|+         .+|++||+||||++||+..+..+.+++.+
T Consensus       151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  199 (272)
T PRK13547        151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR  199 (272)
T ss_pred             HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            99999999999         59999999999999999999999999875

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7e-30  Score=219.81  Aligned_cols=170  Identities=18%  Similarity=0.128  Sum_probs=120.6

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCCc-cCCCCCC----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p---~~G~-~~~~~~~----  147 (255)
                      .+|+++||++.|++  +.  +++|+||+|.+||++||+|+||||||||+++|+|+.+. .|   ++|+ .+++...    
T Consensus         4 ~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14255          4 KIITSSDVHLFYGK--FE--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN   78 (252)
T ss_pred             ceEEEEeEEEEECC--ee--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence            47999999999986  34  45999999999999999999999999999999998620 03   4788 4444211    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k  214 (255)
                            ...+++ +.+... ...  .++.+++.+.....+.... .........++.+++.      .+..+..||+||+
T Consensus        79 ~~~~~~~~~i~~-~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~  154 (252)
T PRK14255         79 EDVVQLRKQVGM-VFQQPN-PFP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ  154 (252)
T ss_pred             ccHHHhcCeEEE-EECCCc-cCC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence                  122444 333322 111  3555555443322222111 1112334556665542      3467789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|++||+||||++||+.++..+.++|.+.
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  194 (252)
T PRK14255        155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL  194 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=4.6e-30  Score=224.94  Aligned_cols=172  Identities=14%  Similarity=0.146  Sum_probs=122.8

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC---CCCc-cCCCCCC--
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK--  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p---~~G~-~~~~~~~--  147 (255)
                      ..++|+++||++.|++  +.  +++|+||+|.+||+++|+||||||||||+++|+|+.+. .|   ++|+ .+++...  
T Consensus        36 ~~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~-~p~~~~~G~I~~~g~~i~~  110 (286)
T PRK14275         36 GKPHVVAKNFSIYYGE--FE--AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDL-IPSCHTTGALMFDGEDIYG  110 (286)
T ss_pred             CceEEEEeeeEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCCceEEEECCEEhhh
Confidence            4568999999999976  33  55999999999999999999999999999999998520 03   8898 4444211  


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ...+++ +.++.. +..  .++.+++.+.....+.... .....+..+++.+++.      .+.++..||+|
T Consensus       111 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  186 (286)
T PRK14275        111 KFTDEVLLRKKIGM-VFQKPN-PFP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGG  186 (286)
T ss_pred             cccchHHhhhcEEE-ECCCCC-CCc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHH
Confidence                    112343 333322 211  2555555543322222111 1122344566666542      35678899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++|+.+|++||+||||++||+.++..+.+++.+.
T Consensus       187 q~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~  228 (286)
T PRK14275        187 QQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQEL  228 (286)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.3e-30  Score=243.18  Aligned_cols=168  Identities=16%  Similarity=0.161  Sum_probs=125.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||++.|++  +.  +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus         3 ~~l~~~~l~~~~~~--~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   75 (501)
T PRK11288          3 PYLSFDGIGKTFPG--VK--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTTA   75 (501)
T ss_pred             ceEEEeeeEEEECC--EE--EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHH
Confidence            58999999999986  33  5599999999999999999999999999999999998   99999 4444221       


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHH--hcCC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                        ...+|+ +.+....+  ..+++.+++.+...  ..+. ........+.++++.+++.  .+.++..|||||+||+++|
T Consensus        76 ~~~~~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~la  152 (501)
T PRK11288         76 ALAAGVAI-IYQELHLV--PEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIA  152 (501)
T ss_pred             HHhCCEEE-EEechhcc--CCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHH
Confidence              123555 33332211  12455554443211  1111 1111123456788888875  3567889999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       153 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (501)
T PRK11288        153 KALARNARVIAFDEPTSSLSAREIEQLFRVIRE  185 (501)
T ss_pred             HHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999875

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.96  E-value=3.8e-30  Score=237.23  Aligned_cols=175  Identities=17%  Similarity=0.226  Sum_probs=134.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC----CCc-cCCCC-CC--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ----KAS-SFDSQ-VK--  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~----~G~-~~~~~-~~--  147 (255)
                      ++|+++||++.|......+.+++||||+|.+||++||+|.|||||||+++.|.|+++   +.    +|+ .+++. ..  
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~---~~~~~~~G~I~~~g~dl~~l   80 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLP---EGGRITSGEVILDGRDLLGL   80 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCC---CCCcccceEEEECCcchhcC
Confidence            489999999999764444457799999999999999999999999999999999995   33    566 45542 11  


Q ss_pred             ---------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC-CCCCccHHHHHHHHHhhcccC----CccCCCCCccc
Q 025293          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGV  213 (255)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~l~~~~----~~~~~~lS~G~  213 (255)
                               ...++. +.++.+...++.+++...+.......+ ...........++++.+++..    +.|+++|||||
T Consensus        81 ~~~~~r~~rg~~Ia~-i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~  159 (539)
T COG1123          81 SEREMRKLRGKRIAM-IFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGM  159 (539)
T ss_pred             CHHHHHHhccccEEE-EecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchH
Confidence                     133454 666666555544454444444333333 223334556778899998863    34899999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||.||+||+.+|++||+||||.+||+..+.++.++|++.
T Consensus       160 rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l  200 (539)
T COG1123         160 RQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDL  200 (539)
T ss_pred             HHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999764

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=2.3e-30  Score=212.52  Aligned_cols=143  Identities=21%  Similarity=0.236  Sum_probs=104.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++|+++|+++.|        +++++||+|++|++++|+|+||||||||+++|+|+++   |++|+              +
T Consensus         3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~--------------i   57 (182)
T cd03215           3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGE--------------I   57 (182)
T ss_pred             cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCce--------------E
Confidence            479999999988        3499999999999999999999999999999999996   77764              3


Q ss_pred             ecCCCCCCCccCCcccChHHHHHhcCC-CCCc---cHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~---~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                      .+++.....  .+   .........++ +++.   ......++.+++.+...     ||+||+||+++|++++.+|+++|
T Consensus        58 ~~~g~~~~~--~~---~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~-----LS~G~~qrl~la~al~~~p~lll  127 (182)
T cd03215          58 TLDGKPVTR--RS---PRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL-----LSGGNQQKVVLARWLARDPRVLI  127 (182)
T ss_pred             EECCEECCc--cC---HHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh-----cCHHHHHHHHHHHHHccCCCEEE
Confidence            334332210  00   00111112222 2221   11112345555443221     99999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|||+++||+.++..+.+++.+
T Consensus       128 lDEP~~~LD~~~~~~l~~~l~~  149 (182)
T cd03215         128 LDEPTRGVDVGAKAEIYRLIRE  149 (182)
T ss_pred             ECCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999875

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.7e-30  Score=221.14  Aligned_cols=170  Identities=16%  Similarity=0.169  Sum_probs=123.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC------C-C
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS------Q-V  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~------~-~  146 (255)
                      .++|+++|++++|++  +.  +++|+||+|.+||+++|+|+||||||||+++|+|+..   |++|+ .+++      . .
T Consensus         8 ~~~i~~~~~~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~   80 (257)
T PRK14246          8 EDVFNISRLYLYIND--KA--ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI   80 (257)
T ss_pred             hhheeeeeEEEecCC--ce--eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence            357999999999987  33  5599999999999999999999999999999999997   89876 2222      1 1


Q ss_pred             C-------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          147 K-------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       147 ~-------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                      .       ...+++ +..+...+  ..+++.+++.+.....+.. .......+..+++.+++.      .+..+..||+|
T Consensus        81 ~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  157 (257)
T PRK14246         81 FQIDAIKLRKEVGM-VFQQPNPF--PHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG  157 (257)
T ss_pred             ccCCHHHHhcceEE-EccCCccC--CCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence            1       122344 33332211  1245555554432222221 111123345677777763      24667889999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++++.+|+++|+||||++||..++..+.++|.+.
T Consensus       158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~  199 (257)
T PRK14246        158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITEL  199 (257)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999753

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=5.9e-30  Score=221.51  Aligned_cols=167  Identities=17%  Similarity=0.172  Sum_probs=119.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-----CCc-cCCCCCC--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK--  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-----~G~-~~~~~~~--  147 (255)
                      ++|+++|+++.|++  +.  +|+|+||+|++|++++|+|+||||||||+++|+|+++   |+     +|+ .+++...  
T Consensus         6 ~~l~~~nl~~~~~~--~~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~~   78 (261)
T PRK14258          6 PAIKVNNLSFYYDT--QK--ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIYE   78 (261)
T ss_pred             ceEEEeeEEEEeCC--ee--EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhhc
Confidence            47999999999976  33  5599999999999999999999999999999999996   64     566 3333211  


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ....++ +..+.. ...  .++.++........+. +.......+..+++.+++.      .+..+..||+|
T Consensus        79 ~~~~~~~~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG  154 (261)
T PRK14258         79 RRVNLNRLRRQVSM-VHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGG  154 (261)
T ss_pred             cccchHHhhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHH
Confidence                    111333 232211 111  3554544433222222 1111123345677777653      35677899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|++|+.+|++||+||||++||+.++..+.+++.+
T Consensus       155 q~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~  195 (261)
T PRK14258        155 QQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS  195 (261)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998875

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=2.7e-30  Score=208.59  Aligned_cols=127  Identities=17%  Similarity=0.208  Sum_probs=98.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      |+++||++.|++  ++  +++++||+|++||+++|+||||||||||+++|+|+++   |++|             . +.+
T Consensus         1 l~~~~l~~~~~~--~~--vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G-------------~-v~~   59 (163)
T cd03216           1 LELRGITKRFGG--VK--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSG-------------E-ILV   59 (163)
T ss_pred             CEEEEEEEEECC--eE--EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCe-------------E-EEE
Confidence            468999999986  34  5599999999999999999999999999999999995   5555             3 455


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~  237 (255)
                      ++.....  .+.   ........++                       +.+||+||+||+++|++++.+|+++|+||||+
T Consensus        60 ~g~~~~~--~~~---~~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~  111 (163)
T cd03216          60 DGKEVSF--ASP---RDARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA  111 (163)
T ss_pred             CCEECCc--CCH---HHHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            5543211  000   0011111111                       11299999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHh
Q 025293          238 FLDGGVWKDVSSMFDE  253 (255)
Q Consensus       238 ~LD~~~~~~l~~ll~~  253 (255)
                      +||+.+++.+.+++.+
T Consensus       112 ~LD~~~~~~l~~~l~~  127 (163)
T cd03216         112 ALTPAEVERLFKVIRR  127 (163)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999999865

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.2e-30  Score=222.67  Aligned_cols=169  Identities=12%  Similarity=0.093  Sum_probs=120.1

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      .++|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |     ++|+ .+++... 
T Consensus        19 ~~~l~i~nl~~~~~~--~~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         19 APAMAAVNLTLGFAG--KT--VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             CcEEEEeeEEEEECC--EE--EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEcc
Confidence            358999999999986  34  4599999999999999999999999999999999986   6     5787 4443211 


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc------CCccCCCCCcc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~------~~~~~~~lS~G  212 (255)
                              ...+++ +.++.. ++.  .++.+++.+....... ..........++++.+++.      .+..+..||+|
T Consensus        92 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG  167 (276)
T PRK14271         92 NYRDVLEFRRRVGM-LFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG  167 (276)
T ss_pred             ccchhHHHhhheEE-eccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence                    112343 333221 111  3444444332211111 1111111234566666664      24567899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+++|++|+.+|++||+||||++||+.+++.+.++|.+.
T Consensus       168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~  209 (276)
T PRK14271        168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSL  209 (276)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988753

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1e-29  Score=221.34  Aligned_cols=172  Identities=15%  Similarity=0.096  Sum_probs=121.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~----  147 (255)
                      ..+|+++|+++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|+++.  ..|++|+ .+++...    
T Consensus        23 ~~~l~~~nl~~~~~~--~~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~   98 (272)
T PRK14236         23 QTALEVRNLNLFYGD--KQ--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK   98 (272)
T ss_pred             CcEEEEEEEEEEECC--ee--EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccc
Confidence            458999999999976  33  45999999999999999999999999999999999850  0027898 4443211    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k  214 (255)
                            ....++ +..+.. .+.  .++.++..+.....+... ......+.++++.+++.      .+..+..||+||+
T Consensus        99 ~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  174 (272)
T PRK14236         99 VDVAELRRRVGM-VFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQ  174 (272)
T ss_pred             cCHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence                  112343 333221 111  244455443322222111 11122345566666653      3466789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|+++|+||||++||+.++..+.+++.+.
T Consensus       175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~  214 (272)
T PRK14236        175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL  214 (272)
T ss_pred             HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.96  E-value=9.3e-30  Score=214.82  Aligned_cols=161  Identities=14%  Similarity=0.133  Sum_probs=115.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++|+++.|++..+.  +++|+||+|++|++++|+||||||||||+++|+|+.+   |++|+ .+++...        .
T Consensus         3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (221)
T cd03244           3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR   77 (221)
T ss_pred             EEEEEEEEecCCCCcc--cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence            6899999999752223  5599999999999999999999999999999999998   99998 4444221        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kq  215 (255)
                      ..+++ +..+.. +..  .++.++..       .........+...++.+++.             ...++..||+||+|
T Consensus        78 ~~i~~-~~q~~~-l~~--~tv~enl~-------~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q  146 (221)
T cd03244          78 SRISI-IPQDPV-LFS--GTIRSNLD-------PFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ  146 (221)
T ss_pred             hhEEE-ECCCCc-ccc--chHHHHhC-------cCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence            22343 332222 111  13322221       11111223333444444332             13467899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus       147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  185 (221)
T cd03244         147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIREA  185 (221)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.96  E-value=4.4e-30  Score=207.89  Aligned_cols=135  Identities=17%  Similarity=0.146  Sum_probs=103.0

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEe
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (255)
                      |+++|+++.|++. +.  +++++||+|.+|++++|+|+||||||||+++|+|+++   |++|+ .+++.   ...++ +.
T Consensus         1 i~~~~~~~~~~~~-~~--~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~-~~   70 (166)
T cd03223           1 IELENLSLATPDG-RV--LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLF-LP   70 (166)
T ss_pred             CEEEEEEEEcCCC-Ce--eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEE-EC
Confidence            4689999999642 23  4599999999999999999999999999999999997   88886 22221   12222 22


Q ss_pred             cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCC
Q 025293          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~  236 (255)
                      .+.. +.                           ..++.+++.+.   .+..||+||+||+++|++++.+|+++|+||||
T Consensus        71 q~~~-~~---------------------------~~tv~~nl~~~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          71 QRPY-LP---------------------------LGTLREQLIYP---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             CCCc-cc---------------------------cccHHHHhhcc---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            1111 00                           01233333222   46889999999999999999999999999999


Q ss_pred             CCCChhHHHHHHHHHHh
Q 025293          237 LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+..+..+.+++.+
T Consensus       120 ~~LD~~~~~~l~~~l~~  136 (166)
T cd03223         120 SALDEESEDRLYQLLKE  136 (166)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99999999999998865

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.96  E-value=6.4e-30  Score=217.29  Aligned_cols=154  Identities=17%  Similarity=0.147  Sum_probs=111.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC----CCCc-cCCCCCC------CCCeEEEEecCCCCCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK------PPDVATVLPMDGFHLYL  164 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p----~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~  164 (255)
                      +++|+||+|++|++++|+||||||||||+++|+|+++   |    ++|+ .+++...      ...+++ +..+......
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~-~~q~~~~~~~   76 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIAT-IMQNPRTAFN   76 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEE-EecCchhhcC
Confidence            3599999999999999999999999999999999997   8    8998 4444321      123444 3333211111


Q ss_pred             ccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-----CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293          165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       165 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L  239 (255)
                      ..+++.++........+.........+.++++.+++.     .+..+..||+||+||+++|++++.+|++|||||||++|
T Consensus        77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L  156 (230)
T TIGR02770        77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL  156 (230)
T ss_pred             cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence            1134434333222222221111233467788888875     35678899999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 025293          240 DGGVWKDVSSMFDE  253 (255)
Q Consensus       240 D~~~~~~l~~ll~~  253 (255)
                      |+.++..+.+++.+
T Consensus       157 D~~~~~~l~~~l~~  170 (230)
T TIGR02770       157 DVVNQARVLKLLRE  170 (230)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998875

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.96  E-value=9.2e-30  Score=221.45  Aligned_cols=171  Identities=13%  Similarity=0.124  Sum_probs=120.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc--ccCCCCCc-cCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~--~~~p~~G~-~~~~~~~----  147 (255)
                      .++|+++||++.|++  +.  +++|+||+|++|+++||+|+||||||||+++|+|+++  ...|++|+ .+++...    
T Consensus        22 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~   97 (271)
T PRK14238         22 KVVFDTQNLNLWYGE--DH--ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKS   97 (271)
T ss_pred             ceEEEEeeeEEEECC--cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEccccc
Confidence            458999999999986  33  5599999999999999999999999999999999983  11148898 4444211    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhcc------cCCccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRN------QGSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~------~~~~~~~~lS~G~k  214 (255)
                            ...+++ +..+.. ++.  .++.+++.+.....+...... ...+.+.++.+++      ..+.++..||+||+
T Consensus        98 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~  173 (271)
T PRK14238         98 YSVEELRTNVGM-VFQKPN-PFP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQ  173 (271)
T ss_pred             ccHHHHhhhEEE-EecCCc-ccc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHH
Confidence                  112444 333322 221  255555544322222111111 1123344444422      13567789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus       174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  212 (271)
T PRK14238        174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE  212 (271)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999865

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.96  E-value=2.7e-30  Score=217.93  Aligned_cols=162  Identities=15%  Similarity=0.121  Sum_probs=114.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++|+++.|++..+.  +++|+||+|++|++++|+||||||||||+++|+|+.+   |++|+ .+++...        .
T Consensus         3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (220)
T cd03245           3 IEFRNVSFSYPNQEIP--ALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR   77 (220)
T ss_pred             EEEEEEEEEcCCCCcc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence            6899999999752122  5699999999999999999999999999999999998   99998 4444221        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--C-----------ccCCCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~-----------~~~~~lS~G~kq  215 (255)
                      ...++ +..+.. +..  .++.++...     .. .......+..+++.+++..  +           ..+..||+||+|
T Consensus        78 ~~i~~-~~q~~~-~~~--~tv~e~l~~-----~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q  147 (220)
T cd03245          78 RNIGY-VPQDVT-LFY--GTLRDNITL-----GA-PLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ  147 (220)
T ss_pred             hhEEE-eCCCCc-ccc--chHHHHhhc-----CC-CCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence            12333 332221 111  122222111     11 1112223445555555431  1           134689999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|++||+||||++||+.++..+.+++.+.
T Consensus       148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  186 (220)
T cd03245         148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQL  186 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998763

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.96  E-value=6.2e-30  Score=241.70  Aligned_cols=172  Identities=15%  Similarity=0.197  Sum_probs=126.8

Q ss_pred             CCeEEecCchheehhh---------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC
Q 025293           75 IPVVEARCMDEVYDAL---------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~---------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~  144 (255)
                      .++|+++||++.|+..         .+.  +|+|+||+|++||++||+||||||||||+|+|+|++    |++|+ .+++
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g  346 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNV--VVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDG  346 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccce--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECC
Confidence            3579999999999521         123  569999999999999999999999999999999998    88998 4544


Q ss_pred             CCC-----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC--CCCCccHHHHHHHHHhhccc---CCccCCC
Q 025293          145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPS  208 (255)
Q Consensus       145 ~~~-----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~---~~~~~~~  208 (255)
                      ...           ...+|+ +.++........+++.+++.+.....+  .........+.++++.+++.   .+.++..
T Consensus       347 ~~i~~~~~~~~~~~~~~i~~-v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~  425 (529)
T PRK15134        347 QPLHNLNRRQLLPVRHRIQV-VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAE  425 (529)
T ss_pred             EEccccchhhHHHhhhceEE-EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCcc
Confidence            211           123455 444321111122466666554322211  11111223456788888874   3677899


Q ss_pred             CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||||||++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus       426 LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  470 (529)
T PRK15134        426 FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS  470 (529)
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999975

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.96  E-value=5.1e-30  Score=218.69  Aligned_cols=162  Identities=14%  Similarity=0.149  Sum_probs=113.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++||++.|++..+.  +++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         1 i~~~~l~~~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (237)
T cd03252           1 ITFEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR   75 (237)
T ss_pred             CEEEEEEEecCCCCcc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence            4689999999642223  5599999999999999999999999999999999998   99998 4554321        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHhh--ccc--CCccCCCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~l--~~~--~~~~~~~lS~G~kq  215 (255)
                      ..+++ +..+.. +..  .++.+++....     . ......+         .++++.+  ++.  .+.++..||+||+|
T Consensus        76 ~~i~~-~~q~~~-~~~--~tv~~nl~~~~-----~-~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q  145 (237)
T cd03252          76 RQVGV-VLQENV-LFN--RSIRDNIALAD-----P-GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ  145 (237)
T ss_pred             hcEEE-EcCCch-hcc--chHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence            12444 333322 111  24333332110     0 0111111         1223322  111  24567899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|++||+||||++||+..+..+.++|.+.
T Consensus       146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  184 (237)
T cd03252         146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDI  184 (237)
T ss_pred             HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.96  E-value=7.1e-30  Score=240.89  Aligned_cols=170  Identities=18%  Similarity=0.229  Sum_probs=125.8

Q ss_pred             CCeEEecCchheehh---hhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cC--CCCC--
Q 025293           75 IPVVEARCMDEVYDA---LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF--DSQV--  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~---~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~--~~~~--  146 (255)
                      .++|+++||++.|++   ..+.  +++|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+  ++..  
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~--il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~  351 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVK--AVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVD  351 (520)
T ss_pred             CceEEEeccEEEeccCCCCCce--EEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccc
Confidence            458999999999952   1123  5599999999999999999999999999999999998   99999 45  3211  


Q ss_pred             -C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-------CccCCC
Q 025293          147 -K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPS  208 (255)
Q Consensus       147 -~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------~~~~~~  208 (255)
                       .          ...+|+ +.++.. +. ..+++.+++..... ...........+.++++.+++..       ++++..
T Consensus       352 ~~~~~~~~~~~~~~~i~~-v~q~~~-l~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~  427 (520)
T TIGR03269       352 MTKPGPDGRGRAKRYIGI-LHQEYD-LY-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDE  427 (520)
T ss_pred             ccccchhhHHHHhhhEEE-EccCcc-cC-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhh
Confidence             0          112454 443321 11 12456555543221 11111112234567888888853       577889


Q ss_pred             CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||+||+++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       428 LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~  472 (520)
T TIGR03269       428 LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILK  472 (520)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999864

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.96  E-value=1.8e-29  Score=217.21  Aligned_cols=170  Identities=17%  Similarity=0.131  Sum_probs=117.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCCc-cCCCCCC-C---
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVK-P---  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl--l~~~~p~~G~-~~~~~~~-~---  148 (255)
                      ++|+++||++.|++  +.  +|+|+||+|++||++||+|+||||||||+++|+|+  ++   |++|+ .+++... .   
T Consensus         6 ~~l~~~~l~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~~   78 (252)
T CHL00131          6 PILEIKNLHASVNE--NE--ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLEP   78 (252)
T ss_pred             ceEEEEeEEEEeCC--EE--eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCCh
Confidence            47999999999986  33  56999999999999999999999999999999997  45   89998 4444211 1   


Q ss_pred             ---CCeEE-EEecCCCCCCCccCCcccChHHHHHhc----CCCCCc---cHHHHHHHHHhhccc---CCccCC-CCCccc
Q 025293          149 ---PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTF---NPLLLLNCLKNLRNQ---GSVYAP-SFDHGV  213 (255)
Q Consensus       149 ---~~~g~-~i~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~~~---~~~~~~~~l~~l~~~---~~~~~~-~lS~G~  213 (255)
                         ...+. ++..+. ... ..++..++........    ......   ....+.++++.+++.   .+..+. .||+||
T Consensus        79 ~~~~~~~~~~~~q~~-~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~  156 (252)
T CHL00131         79 EERAHLGIFLAFQYP-IEI-PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE  156 (252)
T ss_pred             hhhheeeEEEEeccc-ccc-ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence               11121 122221 111 1123333322211110    000000   112345677877775   245555 599999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus       157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  197 (252)
T CHL00131        157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKL  197 (252)
T ss_pred             HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.96  E-value=5.6e-30  Score=240.50  Aligned_cols=167  Identities=17%  Similarity=0.169  Sum_probs=122.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC--CCCc-cCCCCCC------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p--~~G~-~~~~~~~------  147 (255)
                      +|+++||++.|++  +.  +++|+||+|++|+++||+||||||||||+++|+|+++   |  ++|+ .+++...      
T Consensus         1 ~l~i~~l~~~~~~--~~--il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~   73 (500)
T TIGR02633         1 LLEMKGIVKTFGG--VK--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR   73 (500)
T ss_pred             CEEEEeEEEEeCC--eE--eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence            4789999999986  34  5599999999999999999999999999999999986   6  6898 4444211      


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhc--C--CCCCccHHHHHHHHHhhcccC---CccCCCCCcccccch
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~--~--~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv  217 (255)
                         ...+|+ +.++.. +. ..+++.+++.+.....  +  .........+.++++.+++..   +.++..|||||+||+
T Consensus        74 ~~~~~~i~~-v~q~~~-~~-~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  150 (500)
T TIGR02633        74 DTERAGIVI-IHQELT-LV-PELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV  150 (500)
T ss_pred             HHHhCCEEE-Eeeccc-cC-CCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence               123555 333322 11 1245555443322111  0  111111234567888888753   356889999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus       151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  186 (500)
T TIGR02633       151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD  186 (500)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999865

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=1.6e-29  Score=240.22  Aligned_cols=165  Identities=16%  Similarity=0.073  Sum_probs=123.7

Q ss_pred             CeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        76 ~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      ++|+++||++.|+ +  +.  +|+|+||+|++|++++|+|||||||||||++|+|+++   |++|+ .+..   ...+|+
T Consensus         5 ~~l~i~~l~~~y~~~--~~--il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~---~~~i~~   74 (556)
T PRK11819          5 YIYTMNRVSKVVPPK--KQ--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAP---GIKVGY   74 (556)
T ss_pred             EEEEEeeEEEEeCCC--Ce--eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence            5899999999998 5  33  5599999999999999999999999999999999998   99998 3332   123555


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHh--------------cCCCCC----------------------ccHHHHHHHHHh
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT----------------------FNPLLLLNCLKN  197 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~~----------------------~~~~~~~~~l~~  197 (255)
                       +.+.....  ..+++.+++.+....              ......                      .....+..+++.
T Consensus        75 -v~Q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  151 (556)
T PRK11819         75 -LPQEPQLD--PEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDA  151 (556)
T ss_pred             -EecCCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHh
Confidence             44432211  124666655432110              011100                      002234567777


Q ss_pred             hccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       198 l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++. .+.++..|||||||||++|++++.+|++|||||||++||+.++..+.++|.+
T Consensus       152 ~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~  208 (556)
T PRK11819        152 LRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD  208 (556)
T ss_pred             CCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence            7764 3677889999999999999999999999999999999999999999999875

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=2.2e-29  Score=197.71  Aligned_cols=168  Identities=19%  Similarity=0.185  Sum_probs=133.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---------  146 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~---------  146 (255)
                      .|+++|+.+.||..+    +|-||+|+-+.||.+.++||+|+|||||+|.|+-+..   |.+|+ .+.++-         
T Consensus         2 sirv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~   74 (242)
T COG4161           2 SIQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             ceEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccH
Confidence            478999999999865    6699999999999999999999999999999998887   99998 222211         


Q ss_pred             -----CCCCeEEEEecCCCCCCCccCCcccChHHH-HHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchh
Q 025293          147 -----KPPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       147 -----~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~  218 (255)
                           .+.++|. +++.+ .++ +.+++.+++... .+..|++.+......+++++++.+.  .++++-.|||||+|||+
T Consensus        75 k~i~~lr~~vgm-vfqqy-~lw-phltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrva  151 (242)
T COG4161          75 KAIRDLRRNVGM-VFQQY-NLW-PHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVA  151 (242)
T ss_pred             HHHHHHHHhhhh-hhhhh-ccC-chhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHH
Confidence                 0234565 33332 332 236776665543 3445666666666778888888775  56778899999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+|++.|++|++||||+.|||+-..++.++|++.
T Consensus       152 iaralmmkpqvllfdeptaaldpeitaqvv~iikel  187 (242)
T COG4161         152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIKEL  187 (242)
T ss_pred             HHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999875

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=8.3e-30  Score=204.39  Aligned_cols=168  Identities=17%  Similarity=0.159  Sum_probs=131.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeE---
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA---  152 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g---  152 (255)
                      +++++||+..-+.  +.+  +.++||++.+||++-|.||||||||||||+|+|+++   |++|+ .+.+........   
T Consensus         2 ~L~a~~L~~~R~e--~~l--f~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~   74 (209)
T COG4133           2 MLEAENLSCERGE--RTL--FSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH   74 (209)
T ss_pred             cchhhhhhhccCc--cee--ecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence            5788999988887  444  599999999999999999999999999999999998   99999 444322111110   


Q ss_pred             -EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293          153 -TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       153 -~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                       ....+....--..++++.||+.|.....+.   .....+.+.++.+++.  .+.++..||-||++||++|+.++..+++
T Consensus        75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL  151 (209)
T COG4133          75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL  151 (209)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence             111111122223457899999998877653   2334567788888886  5778889999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||||++||......+..++...
T Consensus       152 WiLDEP~taLDk~g~a~l~~l~~~H  176 (209)
T COG4133         152 WILDEPFTALDKEGVALLTALMAAH  176 (209)
T ss_pred             eeecCcccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999888653

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=7.9e-30  Score=240.04  Aligned_cols=167  Identities=14%  Similarity=0.109  Sum_probs=122.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKP-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~-----  148 (255)
                      ++|+++|+++.|+.      +++|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++. +..     
T Consensus       264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~  334 (510)
T PRK09700        264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD  334 (510)
T ss_pred             cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence            47999999997642      5699999999999999999999999999999999998   99999 45442 211     


Q ss_pred             ---CCeEEEEecCC--CCCCCccCCcccChHHHHHh----c----CC-CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293          149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEAHAR----R----GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       149 ---~~~g~~i~~~~--~~~~~~~l~~~~~~~~~~~~----~----~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~  211 (255)
                         ..+|+ +.++.  ..+ ...+++.++.......    .    +. ........+.++++.+++.   .+.++..|||
T Consensus       335 ~~~~~i~~-v~q~~~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  412 (510)
T PRK09700        335 AVKKGMAY-ITESRRDNGF-FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG  412 (510)
T ss_pred             HHHCCcEE-ccCccccCCC-cCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence               12454 33321  111 1124554443321110    0    10 0001112356788888884   4677889999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||++|++|+.+|++||+||||++||+.+++.+.++|.+
T Consensus       413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  454 (510)
T PRK09700        413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ  454 (510)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999975

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.96  E-value=2.1e-29  Score=216.19  Aligned_cols=167  Identities=15%  Similarity=0.083  Sum_probs=113.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCCCCCCC-----
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~~~~~~-----  148 (255)
                      ||+++||++.|++  +.  +++|+||+|++|++++|+|+||||||||+++|+|++  +   |++|+ .+++....     
T Consensus         1 ~i~~~nl~~~~~~--~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~   73 (248)
T PRK09580          1 MLSIKDLHVSVED--KA--ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE   73 (248)
T ss_pred             CeEEEEEEEEeCC--ee--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence            4789999999986  33  559999999999999999999999999999999994  5   89998 45443211     


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CC-C-CCcc----HHHHHHHHHhhccc---CCccCC-CCCccc
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-P-WTFN----PLLLLNCLKNLRNQ---GSVYAP-SFDHGV  213 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~-~-~~~~----~~~~~~~l~~l~~~---~~~~~~-~lS~G~  213 (255)
                          ..+++ +..+.....  .++............ .. . ....    ...+.++++.+++.   .+..+. .||+||
T Consensus        74 ~~~~~~i~~-~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~  150 (248)
T PRK09580         74 DRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE  150 (248)
T ss_pred             HHhhcceEE-EecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence                12333 222211111  011111111000000 00 0 0001    12234566666663   233443 799999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~  190 (248)
T PRK09580        151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNS  190 (248)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.2e-29  Score=238.58  Aligned_cols=173  Identities=16%  Similarity=0.161  Sum_probs=124.5

Q ss_pred             CCeEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCCCC-CC---
Q 025293           75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQ-VK---  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~~~-~~---  147 (255)
                      .++|+++||++.|+.. .+.  +++|+||+|++||++||+||||||||||+|+|+|+++   | ++|+ .+++. +.   
T Consensus       257 ~~~l~~~~l~~~~~~~~~~~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~  331 (506)
T PRK13549        257 EVILEVRNLTAWDPVNPHIK--RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRN  331 (506)
T ss_pred             CceEEEecCccccccccccc--cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCC
Confidence            3579999999999421 123  5699999999999999999999999999999999985   5 8998 44442 11   


Q ss_pred             -----CCCeEEEEecCCC-CCCCccCCcccChHHHHH--hcC---CCCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293          148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA--RRG---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       148 -----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~  213 (255)
                           ...+|+ +.++.. ......+++.++..+...  ...   .........+.++++.+++.   .++++..|||||
T Consensus       332 ~~~~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~  410 (506)
T PRK13549        332 PQQAIAQGIAM-VPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGN  410 (506)
T ss_pred             HHHHHHCCCEE-eCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHH
Confidence                 112454 333321 001112455555443211  111   01111223467788888874   367788999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|++++.+|++|||||||++||+.+++.+.++|.+
T Consensus       411 kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  450 (506)
T PRK13549        411 QQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ  450 (506)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.96  E-value=5e-30  Score=217.25  Aligned_cols=168  Identities=16%  Similarity=0.161  Sum_probs=117.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ..+|+++|+++.|++... ..+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         9 ~~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~   84 (226)
T cd03248           9 KGIVKFQNVTFAYPTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEHK   84 (226)
T ss_pred             CceEEEEEEEEEeCCCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCHH
Confidence            458999999999975211 125699999999999999999999999999999999998   99998 4444321      


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc--HH-----HHHHHHHhh--ccc--CCccCCCCCcccc
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN--PL-----LLLNCLKNL--RNQ--GSVYAPSFDHGVG  214 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~l~~l--~~~--~~~~~~~lS~G~k  214 (255)
                        ....++ +..+.. ++.  .++.++..+...    .....  ..     ...++++.+  ++.  .+.++..||+||+
T Consensus        85 ~~~~~i~~-~~q~~~-l~~--~tv~~nl~~~~~----~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~  156 (226)
T cd03248          85 YLHSKVSL-VGQEPV-LFA--RSLQDNIAYGLQ----SCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQK  156 (226)
T ss_pred             HHHhhEEE-EecccH-HHh--hhHHHHhccccC----CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHH
Confidence              112344 333221 111  133222211100    00000  00     123455555  333  3566889999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|+++|+||||++||+..+..+.+++.+.
T Consensus       157 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~  196 (226)
T cd03248         157 QRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDW  196 (226)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=4.8e-30  Score=212.35  Aligned_cols=148  Identities=14%  Similarity=0.122  Sum_probs=103.2

Q ss_pred             eEEecCchheehhh--hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293           77 VVEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        77 ~l~v~~lsk~y~~~--~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      .|+++|+++.|++.  .+.  +++++||+|++|++++|+||||||||||+++|+|+... -|++|+              
T Consensus         3 ~l~~~~l~~~~~~~~~~~~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~-~~~~G~--------------   65 (192)
T cd03232           3 VLTWKNLNYTVPVKGGKRQ--LLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTA-GVITGE--------------   65 (192)
T ss_pred             EEEEeeeEEEecCCCCceE--eEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcC-CCcceE--------------
Confidence            68999999999741  123  56999999999999999999999999999999997520 045554              


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlD  233 (255)
                      +.+++....          .......++ ++........++.+++.+....  ..||+||+||+++|++++.+|+++|+|
T Consensus        66 i~~~g~~~~----------~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~--~~LSgGe~qrv~la~al~~~p~vlllD  133 (192)
T cd03232          66 ILINGRPLD----------KNFQRSTGYVEQQDVHSPNLTVREALRFSALL--RGLSVEQRKRLTIGVELAAKPSILFLD  133 (192)
T ss_pred             EEECCEehH----------HHhhhceEEecccCccccCCcHHHHHHHHHHH--hcCCHHHhHHHHHHHHHhcCCcEEEEe
Confidence            333333210          001111121 2211111112333333321111  189999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHh
Q 025293          234 GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       234 ep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++||+.++..+.+++.+
T Consensus       134 EP~~~LD~~~~~~l~~~l~~  153 (192)
T cd03232         134 EPTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             CCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999875

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.96  E-value=3.9e-29  Score=209.09  Aligned_cols=158  Identities=15%  Similarity=0.147  Sum_probs=115.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..|+++|+++.|++..+.  +++|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         5 ~~l~~~~l~~~~~~~~~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   79 (207)
T cd03369           5 GEIEVENLSVRYAPDLPP--VLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED   79 (207)
T ss_pred             CeEEEEEEEEEeCCCCcc--cccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence            468999999999752123  5699999999999999999999999999999999998   99998 4444211       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccC
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                       ...+++ +..+.. +..  .++.++..       +........+.+.++     .+.++..||+||+||+++|++++.+
T Consensus        80 ~~~~i~~-v~q~~~-~~~--~tv~~~l~-------~~~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~  143 (207)
T cd03369          80 LRSSLTI-IPQDPT-LFS--GTIRSNLD-------PFDEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKR  143 (207)
T ss_pred             HHhhEEE-EecCCc-ccC--ccHHHHhc-------ccCCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence             123444 333322 111  23333221       111122223333333     3567889999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|+||||++||+..+..+.++|.+.
T Consensus       144 p~llllDEP~~~LD~~~~~~l~~~l~~~  171 (207)
T cd03369         144 PRVLVLDEATASIDYATDALIQKTIREE  171 (207)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999998753

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.96  E-value=1.3e-29  Score=210.18  Aligned_cols=147  Identities=16%  Similarity=0.135  Sum_probs=103.4

Q ss_pred             eEEecCchheehhh----hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCccCCCCCCCCC
Q 025293           77 VVEARCMDEVYDAL----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPPD  150 (255)
Q Consensus        77 ~l~v~~lsk~y~~~----~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~~~~~~~~~~~  150 (255)
                      .|+++||++.|++.    .+.  +++|+||+|++|++++|+||||||||||+++|+|++  +   |++|+          
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~--~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~----------   67 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQ--LLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGE----------   67 (194)
T ss_pred             EEEEEeeEEEEecCCCccccc--ceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceE----------
Confidence            47899999999751    123  569999999999999999999999999999999998  7   77775          


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcE
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                          +.+++.....         .......++ ++........++.+++.+...  ...||+||+||+++|++|+.+|++
T Consensus        68 ----i~~~g~~~~~---------~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~--~~~LS~G~~qrv~laral~~~p~i  132 (194)
T cd03213          68 ----VLINGRPLDK---------RSFRKIIGYVPQDDILHPTLTVRETLMFAAK--LRGLSGGERKRVSIALELVSNPSL  132 (194)
T ss_pred             ----EEECCEeCch---------HhhhheEEEccCcccCCCCCcHHHHHHHHHH--hccCCHHHHHHHHHHHHHHcCCCE
Confidence                2222221110         000011111 111111111122222222111  118999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+||||++||+.+++.+.+++.+
T Consensus       133 lllDEP~~~LD~~~~~~l~~~l~~  156 (194)
T cd03213         133 LFLDEPTSGLDSSSALQVMSLLRR  156 (194)
T ss_pred             EEEeCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999875

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.96  E-value=1.2e-29  Score=215.58  Aligned_cols=151  Identities=15%  Similarity=0.146  Sum_probs=110.8

Q ss_pred             ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEEEEecCCCCCCCccCCcccC
Q 025293           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMED  172 (255)
Q Consensus        97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~  172 (255)
                      ++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...   .+..++ +.+.....  ..+++.++
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~-v~q~~~l~--~~~tv~e~   74 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMV-VFQNYSLL--PWLTVREN   74 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheE-EecCcccC--CCCCHHHH
Confidence            479999999999999999999999999999999998   99999 4444221   122343 33332211  12455555


Q ss_pred             hHHHHHh-c-CCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH
Q 025293          173 PKEAHAR-R-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       173 ~~~~~~~-~-~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~  248 (255)
                      ..+.... . +.........+..+++.+++.  .+.++..|||||+||+++|++|+.+|++||+||||++||+.++..+.
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  154 (230)
T TIGR01184        75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ  154 (230)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            5443211 1 111111123356778877775  35678899999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 025293          249 SMFDE  253 (255)
Q Consensus       249 ~ll~~  253 (255)
                      ++|.+
T Consensus       155 ~~l~~  159 (230)
T TIGR01184       155 EELMQ  159 (230)
T ss_pred             HHHHH
Confidence            99865

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.9e-29  Score=238.47  Aligned_cols=162  Identities=12%  Similarity=0.121  Sum_probs=123.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      .+|+++||++.|++  +.  +++|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++.   ..+|+ 
T Consensus       318 ~~l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~-  386 (530)
T PRK15064        318 NALEVENLTKGFDN--GP--LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGY-  386 (530)
T ss_pred             ceEEEEeeEEeeCC--ce--eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence            48999999999986  33  5599999999999999999999999999999999998   99998 44432   23454 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                      +.+.........+++.++...    ... .......+.++++.+++.   .+.++..|||||+||+++|++++.+|++||
T Consensus       387 ~~q~~~~~~~~~~t~~~~~~~----~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll  461 (530)
T PRK15064        387 YAQDHAYDFENDLTLFDWMSQ----WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV  461 (530)
T ss_pred             EcccccccCCCCCcHHHHHHH----hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            433321111111344333221    111 112234567788888873   467889999999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||||++||+.++..+.+++.+
T Consensus       462 LDEPt~~LD~~~~~~l~~~l~~  483 (530)
T PRK15064        462 MDEPTNHMDMESIESLNMALEK  483 (530)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998865

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.96  E-value=8.2e-30  Score=212.30  Aligned_cols=146  Identities=17%  Similarity=0.123  Sum_probs=103.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCccCCCCCCCCCeEEEE
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++|+++.|++  +.  +++|+||++.+||+++|+|+||||||||+++|+|+.  .   |++|+              +
T Consensus         1 l~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~---p~~G~--------------i   59 (200)
T cd03217           1 LEIKDLHVSVGG--KE--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYE---VTEGE--------------I   59 (200)
T ss_pred             CeEEEEEEEeCC--EE--eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCC---CCccE--------------E
Confidence            468999999986  33  559999999999999999999999999999999984  4   56663              3


Q ss_pred             ecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      .+++.....  ..   .........++ ++........++.+++    ......||+||+||+++|++++.+|+++|+||
T Consensus        60 ~~~g~~~~~--~~---~~~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDE  130 (200)
T cd03217          60 LFKGEDITD--LP---PEERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDE  130 (200)
T ss_pred             EECCEECCc--CC---HHHHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            444432211  00   00001111222 2222111112223322    22235899999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHh
Q 025293          235 NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++||+.++..+.+++.+
T Consensus       131 Pt~~LD~~~~~~l~~~L~~  149 (200)
T cd03217         131 PDSGLDIDALRLVAEVINK  149 (200)
T ss_pred             CCccCCHHHHHHHHHHHHH
Confidence            9999999999999999875

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.3e-29  Score=211.26  Aligned_cols=172  Identities=16%  Similarity=0.093  Sum_probs=122.2

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCCC-----
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQV-----  146 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~~-----  146 (255)
                      .+++|+++||+..|++  ++++  +|+|++|++||..+|+|||||||||||++++|...   |++|.  .++...     
T Consensus        28 ~~~li~l~~v~v~r~g--k~iL--~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~  100 (257)
T COG1119          28 NEPLIELKNVSVRRNG--KKIL--GDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET  100 (257)
T ss_pred             CcceEEecceEEEECC--Eeec--cccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence            3568999999999998  5555  99999999999999999999999999999999997   88876  222111     


Q ss_pred             ---CCCCeEEEEec-CCCCCCCccCCcccChH-HHHHhcCCCC-C---ccHHHHHHHHHhhccc--CCccCCCCCccccc
Q 025293          147 ---KPPDVATVLPM-DGFHLYLSQLDAMEDPK-EAHARRGAPW-T---FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD  215 (255)
Q Consensus       147 ---~~~~~g~~i~~-~~~~~~~~~l~~~~~~~-~~~~~~~~~~-~---~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kq  215 (255)
                         .+..+|. +.- -...+. ...++.+-+. -...-.|+++ .   .+......+++.++..  .+++...||-||+|
T Consensus       101 ~~elrk~IG~-vS~~L~~~~~-~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~r  178 (257)
T COG1119         101 IFELRKRIGL-VSSELHERFR-VRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQR  178 (257)
T ss_pred             hHHHHHHhCc-cCHHHHhhcc-cccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHH
Confidence               0122333 110 000000 0011111110 0111223322 2   2334556788888776  57888999999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.|||||+.+|++||||||+.|||...++.+.+.|.+.
T Consensus       179 rvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~  217 (257)
T COG1119         179 RVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEEL  217 (257)
T ss_pred             HHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988764

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=2.7e-29  Score=217.57  Aligned_cols=148  Identities=14%  Similarity=0.147  Sum_probs=105.5

Q ss_pred             ccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccCh
Q 025293           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (255)
Q Consensus        95 l~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~  173 (255)
                      .+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++.     .+. +..... + ...+++.+++
T Consensus        38 ~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~-----~~~-~~~~~~-~-~~~~tv~enl  106 (264)
T PRK13546         38 FALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGE-----VSV-IAISAG-L-SGQLTGIENI  106 (264)
T ss_pred             EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCE-----EeE-EecccC-C-CCCCcHHHHH
Confidence            36699999999999999999999999999999999998   89997 33332     111 111111 1 1123554444


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293          174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      .......+............+++.+++.  .+..+..||+||+||+++|++++.+|++||+||||++||+..+..+.+++
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L  186 (264)
T PRK13546        107 EFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKI  186 (264)
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHH
Confidence            3322222221111112234455555554  35677899999999999999999999999999999999999999999988


Q ss_pred             Hh
Q 025293          252 DE  253 (255)
Q Consensus       252 ~~  253 (255)
                      .+
T Consensus       187 ~~  188 (264)
T PRK13546        187 YE  188 (264)
T ss_pred             HH
Confidence            65

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.9e-29  Score=215.68  Aligned_cols=171  Identities=13%  Similarity=0.119  Sum_probs=120.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~----  147 (255)
                      |-+|+++||++.|++  +.  +++|+||+|.+||+++|+|+||||||||+++|+|++..  ..|++|+ .+++...    
T Consensus         1 ~~~l~~~~v~~~~~~--~~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~   76 (250)
T PRK14266          1 MYRIEVENLNTYFDD--AH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA   76 (250)
T ss_pred             CcEEEEEeEEEEeCC--eE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEccccc
Confidence            447899999999986  34  55999999999999999999999999999999998630  0137898 4444221    


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCCCcccc
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~lS~G~k  214 (255)
                            ....++ +..+.. .+.  .++.+++.+.....+... ......+.+.++.+++.      .+..+..||+||+
T Consensus        77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~  152 (250)
T PRK14266         77 VDVVELRKKVGM-VFQKPN-PFP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQ  152 (250)
T ss_pred             ccHHHHhhheEE-EecCCc-cCc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHH
Confidence                  112444 333322 111  244444433222222111 11122345566666542      3566789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~  191 (250)
T PRK14266        153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK  191 (250)
T ss_pred             HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.2e-29  Score=238.06  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=121.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEE
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (255)
                      ||+++||++.|++  ++  +|+|+||+|++|++++|+||||||||||||+|+|+++   |++|+ .+++.   ..+|+ +
T Consensus         1 ml~i~~ls~~~~~--~~--il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~-~   69 (530)
T PRK15064          1 MLSTANITMQFGA--KP--LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGK-L   69 (530)
T ss_pred             CEEEEEEEEEeCC--cE--eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence            4899999999986  34  5599999999999999999999999999999999998   99998 44432   23554 4


Q ss_pred             ecCCCCCCCccCCcccChHHHHH-----------hcCCCC---------------------CccHHHHHHHHHhhcccC-
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG-  202 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~-----------~~~~~~---------------------~~~~~~~~~~l~~l~~~~-  202 (255)
                      .+....+  ..+++.+++.+...           ....+.                     ......+..+++.+++.. 
T Consensus        70 ~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  147 (530)
T PRK15064         70 RQDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE  147 (530)
T ss_pred             eccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence            4332211  12344444332110           000000                     001234567788888753 


Q ss_pred             --CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          203 --SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 --~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                        +.++..|||||+||+++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  200 (530)
T PRK15064        148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE  200 (530)
T ss_pred             HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence              356789999999999999999999999999999999999999999998864

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.7e-29  Score=217.35  Aligned_cols=167  Identities=14%  Similarity=0.080  Sum_probs=123.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC--
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK--  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~--  147 (255)
                      ..+.++++++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|++.   |     ++|+ .+++...  
T Consensus         7 ~~~~~~~~~~~~~~--~~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~~   79 (261)
T PRK14263          7 IVMDCKLDKIFYGN--FM--AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVYG   79 (261)
T ss_pred             ceEEEEeEEEEeCC--EE--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEeccc
Confidence            57899999999987  33  5599999999999999999999999999999999996   5     6888 4444211  


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC------CccCCCCCccc
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHGV  213 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~------~~~~~~lS~G~  213 (255)
                              ...+++ +..+...+ .  .++.+++.+.....+.. ......+.++++.+++..      +.++..||+||
T Consensus        80 ~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~  154 (261)
T PRK14263         80 KGVDPVVVRRYIGM-VFQQPNPF-S--MSIFDNVAFGLRLNRYK-GDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQ  154 (261)
T ss_pred             cccchHhhhhceEE-EecCCccc-c--ccHHHHHHHHHhhcCch-HHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence                    112444 33332211 1  45555554433222211 111234566777777632      35567899999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~  195 (261)
T PRK14263        155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL  195 (261)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999763

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=4.8e-30  Score=202.40  Aligned_cols=165  Identities=15%  Similarity=0.177  Sum_probs=121.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC---C---
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---P---  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~---~---  149 (255)
                      .++++++...-++  .+  +|+++||.+.+||+++|+||+|||||||+|+++-++.   |++|+ +|.++...   +   
T Consensus         3 lle~kq~~y~a~~--a~--il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~   75 (223)
T COG4619           3 LLELKQVGYLAGD--AK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY   75 (223)
T ss_pred             chHHHHHHhhcCC--Ce--eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence            4567777655555  34  4599999999999999999999999999999999998   99998 55554321   1   


Q ss_pred             --CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhc
Q 025293          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                        .+.++.+.... +.   -++.+|+.+.-..+.  ..++......++.+++++   ..+.+..|||||+||++++|.|.
T Consensus        76 Rq~VsY~~Q~paL-fg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq  149 (223)
T COG4619          76 RQQVSYCAQTPAL-FG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ  149 (223)
T ss_pred             HHHHHHHHcCccc-cc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence              11111111110 00   144444443322221  223456677888888887   46778899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      -.|+||+|||||+.||+.+.+.+.++|.+-
T Consensus       150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~~~  179 (223)
T COG4619         150 FMPKILLLDEITSALDESNKRNIEEMIHRY  179 (223)
T ss_pred             cCCceEEecCchhhcChhhHHHHHHHHHHH
Confidence            999999999999999999999999998653

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.96  E-value=3.2e-29  Score=212.39  Aligned_cols=174  Identities=17%  Similarity=0.131  Sum_probs=120.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~  150 (255)
                      ++.++||++.|.+......+++|+||+|++||+++|+||||||||||+++|+|+++..-|++|+ .+++...     ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            5789999999965210122569999999999999999999999999999999998300037888 4444211     123


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-C--ccHHHHHH-HHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-T--FNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~--~~~~~~~~-~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      +++ +.++...+  ..+++.++..+......... .  ........ .++.+++.  .+..+..||+||+||+++|++|+
T Consensus        83 i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~  159 (226)
T cd03234          83 VAY-VRQDDILL--PGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             EEE-eCCCCccC--cCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence            444 33332211  22466666654332221110 1  11112233 66666665  35677899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|+++|+||||++||+.++..+.+++.+
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~  188 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQ  188 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999875

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.96  E-value=2.2e-29  Score=239.06  Aligned_cols=165  Identities=16%  Similarity=0.122  Sum_probs=125.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      .++|+++||++.|++  +.  +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++.   ..+|+
T Consensus       320 ~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~  389 (552)
T TIGR03719       320 DKVIEAENLSKGFGD--KL--LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY  389 (552)
T ss_pred             CeEEEEeeEEEEECC--ee--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE
Confidence            358999999999986  33  5599999999999999999999999999999999998   99998 44322   24565


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                       +.++...+. ..+++.+++.+.....+...  .......+++.+++.   .+.++..|||||+||+++|++|+.+|++|
T Consensus       390 -v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~ll  465 (552)
T TIGR03719       390 -VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVL  465 (552)
T ss_pred             -EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEE
Confidence             444321111 12455554433221111111  122345678888874   35778999999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||++||+.++..+.++|.+
T Consensus       466 lLDEPt~~LD~~~~~~l~~~l~~  488 (552)
T TIGR03719       466 LLDEPTNDLDVETLRALEEALLE  488 (552)
T ss_pred             EEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999875

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=1.7e-29  Score=262.39  Aligned_cols=172  Identities=15%  Similarity=0.089  Sum_probs=134.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ..+|+++||+|.|++..+.  +++|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...      
T Consensus      1935 ~~~L~v~nLsK~Y~~~~~~--aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~ 2009 (2272)
T TIGR01257      1935 TDILRLNELTKVYSGTSSP--AVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISD 2009 (2272)
T ss_pred             CceEEEEEEEEEECCCCce--EEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHH
Confidence            4589999999999852122  6699999999999999999999999999999999998   99999 4544221      


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       ...+|+ +.+.....  ..+++.+++.+....++++.......+..+++.+++.  .++++..||||||||+++|+||+
T Consensus      2010 ~r~~IGy-~pQ~~~L~--~~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi 2086 (2272)
T TIGR01257      2010 VHQNMGY-CPQFDAID--DLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALI 2086 (2272)
T ss_pred             HhhhEEE-EeccccCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHh
Confidence             224666 33332222  2367777777655555654322233456678888775  46778999999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|+||||||||+|||+..++.++++|.+.
T Consensus      2087 ~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l 2116 (2272)
T TIGR01257      2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSI 2116 (2272)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=2.8e-29  Score=238.48  Aligned_cols=165  Identities=16%  Similarity=0.128  Sum_probs=125.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      .++|+++||++.|++  +.  +|+|+||+|.+||++||+||||||||||+++|+|+++   |++|+ .++..   ..+|+
T Consensus       322 ~~~l~~~~l~~~~~~--~~--~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~  391 (556)
T PRK11819        322 DKVIEAENLSKSFGD--RL--LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY  391 (556)
T ss_pred             CeEEEEEeEEEEECC--ee--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE
Confidence            358999999999987  33  5599999999999999999999999999999999998   99998 34322   24565


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                       +.++...+ ...+++.+++.+.....+..  ........+++.+++.   .+.++..|||||+||+++|++++.+|++|
T Consensus       392 -v~q~~~~~-~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll  467 (556)
T PRK11819        392 -VDQSRDAL-DPNKTVWEEISGGLDIIKVG--NREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVL  467 (556)
T ss_pred             -EeCchhhc-CCCCCHHHHHHhhccccccc--ccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence             44432111 12245555544322111111  1122345678888874   36778999999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||++||+.++..+.++|.+
T Consensus       468 lLDEPt~~LD~~~~~~l~~~l~~  490 (556)
T PRK11819        468 LLDEPTNDLDVETLRALEEALLE  490 (556)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHh
Confidence            99999999999999999999875

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.7e-29  Score=216.92  Aligned_cols=168  Identities=14%  Similarity=0.104  Sum_probs=119.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-----CCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (255)
                      ..+|+++||++.|++  +.  +++|+||+|++||+++|+|+||||||||+++|+|++.   |     ++|+ .+++... 
T Consensus        14 ~~~l~~~~l~~~~~~--~~--vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~~~   86 (265)
T PRK14252         14 QQKSEVNKLNFYYGG--YQ--ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDNVN   86 (265)
T ss_pred             CceEEEEEEEEEECC--ee--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCcccc
Confidence            457999999999986  33  5599999999999999999999999999999999985   5     6787 4443211 


Q ss_pred             -----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC-CccHHHHHHHHHhhccc------CCccCCCC
Q 025293          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSF  209 (255)
Q Consensus       148 -----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~l~~~------~~~~~~~l  209 (255)
                                 ...+++ +...... ..  .++.+++.+.....+... .........+++.+++.      .+..+..|
T Consensus        87 ~~~~~~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~L  162 (265)
T PRK14252         87 ILSPEVDPIEVRMRISM-VFQKPNP-FP--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL  162 (265)
T ss_pred             ccccccCHHHHhccEEE-EccCCcC-Cc--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccC
Confidence                       112343 3332221 11  244444443322222211 11123344555655542      24567899


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+||+++|++|+.+|+++|+||||++||+.++..+.++|.+
T Consensus       163 S~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  206 (265)
T PRK14252        163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD  206 (265)
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999875

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.96  E-value=5.1e-30  Score=218.18  Aligned_cols=162  Identities=17%  Similarity=0.148  Sum_probs=113.2

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++|+++.|++..+.  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         1 i~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   75 (234)
T cd03251           1 VEFKNVTFRYPGDGPP--VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR   75 (234)
T ss_pred             CEEEEEEEEeCCCCcc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence            4789999999763113  5599999999999999999999999999999999998   99998 4444211        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHH---------HHHHHHhh--ccc--CCccCCCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNL--RNQ--GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------~~~~l~~l--~~~--~~~~~~~lS~G~kq  215 (255)
                      ..+++ +..+.. +..  .++.++.....     . ......         +.++++.+  ++.  .+.++..||+||+|
T Consensus        76 ~~i~~-~~q~~~-~~~--~tv~enl~~~~-----~-~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q  145 (234)
T cd03251          76 RQIGL-VSQDVF-LFN--DTVAENIAYGR-----P-GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ  145 (234)
T ss_pred             hhEEE-eCCCCe-ecc--ccHHHHhhccC-----C-CCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence            12343 333221 111  23333222110     0 111111         12333333  121  34567899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++|+.+|+++|+||||++||+.++..+.+++.+.
T Consensus       146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~  184 (234)
T cd03251         146 RIAIARALLKDPPILILDEATSALDTESERLVQAALERL  184 (234)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.96  E-value=7.3e-29  Score=207.02  Aligned_cols=154  Identities=14%  Similarity=0.109  Sum_probs=108.6

Q ss_pred             EEecCchheehhhh---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           78 VEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        78 l~v~~lsk~y~~~~---~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      |+++||++.|++..   +.  +++|+||+|++|++++|+||||||||||+++|+|+.+   |++|+ .+++     .+++
T Consensus         1 l~~~~l~~~~~~~~~~~~~--il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~   70 (204)
T cd03250           1 ISVEDASFTWDSGEQETSF--TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAY   70 (204)
T ss_pred             CEEeEEEEecCCCCccccc--eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEE
Confidence            47899999997631   13  5699999999999999999999999999999999998   99998 4443     3444


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc-------------cCCccCCCCCcccccchhhh
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-------------QGSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-------------~~~~~~~~lS~G~kqrv~la  220 (255)
                       +..+...+.   .++.++..+       ............++.+++             ........||+||+||+++|
T Consensus        71 -~~q~~~l~~---~t~~enl~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~la  139 (204)
T cd03250          71 -VSQEPWIQN---GTIRENILF-------GKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLA  139 (204)
T ss_pred             -EecCchhcc---CcHHHHhcc-------CCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHH
Confidence             333322111   233332221       111111122222222211             12345678999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHH-HHH
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD  252 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~-ll~  252 (255)
                      ++++.+|+++|+||||++||+..++.+.+ ++.
T Consensus       140 ral~~~p~llllDEP~~~LD~~~~~~l~~~ll~  172 (204)
T cd03250         140 RAVYSDADIYLLDDPLSAVDAHVGRHIFENCIL  172 (204)
T ss_pred             HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998887 443

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.3e-29  Score=215.56  Aligned_cols=168  Identities=12%  Similarity=0.077  Sum_probs=118.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc--cCCCCCc-cCCCCCC-------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~--~~p~~G~-~~~~~~~-------  147 (255)
                      -+++||++.|++  +.  +++|+||+|.+||+++|+|+||||||||+++|+|+.+.  ..|++|+ .+++...       
T Consensus         6 ~~~~~l~~~~~~--~~--~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   81 (251)
T PRK14244          6 ASVKNLNLWYGS--KQ--ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV   81 (251)
T ss_pred             EEeeeEEEEECC--ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence            368999999976  33  55999999999999999999999999999999999730  0026888 4443211       


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccc------CCccCCCCCcccccc
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~------~~~~~~~lS~G~kqr  216 (255)
                         ....++ +.++...+.   .++.++..+.....+....  .....+.++++.+++.      .+..+..||+||+||
T Consensus        82 ~~~~~~i~~-v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr  157 (251)
T PRK14244         82 VLLRAKVGM-VFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR  157 (251)
T ss_pred             HHHhhhEEE-EecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence               112444 343322111   1444444433222221111  1122345677888764      245678999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (251)
T PRK14244        158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE  194 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999875

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.5e-29  Score=237.04  Aligned_cols=164  Identities=14%  Similarity=0.086  Sum_probs=120.6

Q ss_pred             ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---------CC
Q 025293           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------PP  149 (255)
Q Consensus        80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---------~~  149 (255)
                      ++||++.|++  +.  +++|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...         ..
T Consensus         1 ~~nl~~~~~~--~~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~   73 (491)
T PRK10982          1 MSNISKSFPG--VK--ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN   73 (491)
T ss_pred             CCceEEEeCC--EE--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence            4789999986  33  5599999999999999999999999999999999998   99999 4554321         12


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHH-hcCC--CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      .+++ +.++....  ..+++.+++.+... ..+.  ........+..+++.+++.  .+.++..|||||+|||++|++|+
T Consensus        74 ~i~~-v~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~  150 (491)
T PRK10982         74 GISM-VHQELNLV--LQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS  150 (491)
T ss_pred             CEEE-Eecccccc--cCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence            3455 44332211  12455554433211 0111  1111123456777877775  35678899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+|++||+||||++||+.++..+.++|.+
T Consensus       151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~  179 (491)
T PRK10982        151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRK  179 (491)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=1.2e-29  Score=204.82  Aligned_cols=169  Identities=14%  Similarity=0.176  Sum_probs=119.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeE---
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA---  152 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g---  152 (255)
                      |++++||+|.|++  +.  +++++|++|++|.+++|+|||||||||||.+++.+++   +++|+ .+++.....+.+   
T Consensus         1 MI~i~nv~K~y~~--~~--vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L   73 (252)
T COG4604           1 MITIENVSKSYGT--KV--VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL   73 (252)
T ss_pred             CeeehhhhHhhCC--EE--eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence            5899999999998  44  4599999999999999999999999999999999997   78886 333321110000   


Q ss_pred             ----EEEecCCCCCCCccCCcccChHHHHH--hcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          153 ----TVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       153 ----~~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                          .++.+.+..  ...+++.+.+.|.+-  ..|-+...+...+.+.++.+.+.  .+++..+|||||+||..+|+.++
T Consensus        74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla  151 (252)
T COG4604          74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA  151 (252)
T ss_pred             HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence                001111110  111233322222111  01111223344456777777776  57888999999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.+.++||||.+.||.....+++++++..
T Consensus       152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrl  181 (252)
T COG4604         152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRL  181 (252)
T ss_pred             ccCcEEEecCcccccchHHHHHHHHHHHHH
Confidence            999999999999999999999999988754

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.96  E-value=3.8e-29  Score=212.17  Aligned_cols=162  Identities=19%  Similarity=0.196  Sum_probs=111.8

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++|+++.|++. +.  +++|+||+|++|++++|+|||||||||||++|+|+++   |++|+ .+++...        
T Consensus         2 ~l~~~~l~~~~~~~-~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   75 (229)
T cd03254           2 EIEFENVNFSYDEK-KP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL   75 (229)
T ss_pred             eEEEEEEEEecCCC-Cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence            37899999999742 23  5599999999999999999999999999999999998   99998 4444211        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc-----------c--CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-----------Q--GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----------~--~~~~~~~lS~G~k  214 (255)
                      ...+++ +..+.. +..  .++.++...     . ........+...++.+++           .  ...++..||+||+
T Consensus        76 ~~~i~~-~~q~~~-~~~--~tv~~~~~~-----~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~  145 (229)
T cd03254          76 RSMIGV-VLQDTF-LFS--GTIMENIRL-----G-RPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER  145 (229)
T ss_pred             hhhEEE-ecCCch-hhh--hHHHHHHhc-----c-CCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence            112343 222211 111  122222111     0 011111222222222221           1  2345789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|+++|+||||++||+.+++.+.+++.+.
T Consensus       146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  185 (229)
T cd03254         146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKL  185 (229)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998753

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.96  E-value=2.1e-29  Score=236.65  Aligned_cols=173  Identities=13%  Similarity=0.107  Sum_probs=122.6

Q ss_pred             CeEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCCCCCC-----
Q 025293           76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~~~~~-----  147 (255)
                      .+|+++|+++.|+.. .+.  +++|+||+|.+||++||+||||||||||+|+|+|+++   | ++|+ .+++...     
T Consensus       256 ~~l~~~~l~~~~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~  330 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRK--RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP  330 (500)
T ss_pred             ceEEEeCCccccccccccc--ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence            479999999999421 123  5699999999999999999999999999999999996   6 7998 4444211     


Q ss_pred             ----CCCeEEEEecCCC-CCCCccCCcccChHHHHH-hc-C---CCCCccHHHHHHHHHhhccc---CCccCCCCCcccc
Q 025293          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ----~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~-~~-~---~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~k  214 (255)
                          ...+|+ +.++.. ......+++.++..+... .. .   .........+.++++.+++.   .+.++..||||||
T Consensus       331 ~~~~~~~i~~-v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk  409 (500)
T TIGR02633       331 AQAIRAGIAM-VPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQ  409 (500)
T ss_pred             HHHHhCCCEE-cCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHH
Confidence                112454 333310 001112344444332110 11 1   01111123456788888884   3577889999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|++|||||||++||+.++..+.+++.+.
T Consensus       410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l  449 (500)
T TIGR02633       410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQL  449 (500)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988653

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=2e-29  Score=236.17  Aligned_cols=172  Identities=16%  Similarity=0.021  Sum_probs=119.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK-----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~~~~~-----  147 (255)
                      .++|+++|+++.|++  +.  +++|+||+|++||++||+||||||||||+|+|+|+.+   | ++|+ .+++...     
T Consensus       258 ~~~l~~~~l~~~~~~--~~--il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~  330 (490)
T PRK10938        258 EPRIVLNNGVVSYND--RP--ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET  330 (490)
T ss_pred             CceEEEeceEEEECC--ee--EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence            468999999999986  33  5599999999999999999999999999999999874   4 5898 4444211     


Q ss_pred             ----CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCC---CCccHHHHHHHHHhhcccC---CccCCCCCcccccc
Q 025293          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP  216 (255)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~---~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqr  216 (255)
                          ...+|+ +.+..........+..+........ .+..   .......+.++++.+++..   +.++..||||||||
T Consensus       331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr  409 (490)
T PRK10938        331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL  409 (490)
T ss_pred             HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence                112344 3322111010001111111100000 0111   1111234567888888753   56788999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l  447 (490)
T PRK10938        410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVL  447 (490)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998763

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.96  E-value=7.3e-29  Score=235.50  Aligned_cols=165  Identities=16%  Similarity=0.060  Sum_probs=121.4

Q ss_pred             CeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        76 ~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      .+|+++||+++|+ +  +.  +|+|+||+|++|++++|+|||||||||||++|+|+++   |++|+ .++.   ...+|+
T Consensus         3 ~~i~~~nls~~~~~~--~~--il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~---~~~i~~   72 (552)
T TIGR03719         3 YIYTMNRVSKVVPPK--KE--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAP---GIKVGY   72 (552)
T ss_pred             EEEEEeeEEEecCCC--Ce--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecC---CCEEEE
Confidence            3799999999997 4  33  5599999999999999999999999999999999998   99998 3432   224555


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHh--------------cCCCCCc----------------------cHHHHHHHHHh
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKN  197 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~~~----------------------~~~~~~~~l~~  197 (255)
                       +.+.....  ..+++.+++.+....              .......                      ....+..+++.
T Consensus        73 -v~Q~~~~~--~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  149 (552)
T TIGR03719        73 -LPQEPQLD--PTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDA  149 (552)
T ss_pred             -EeccCCCC--CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhh
Confidence             44432211  124665555432110              0111010                      01123445666


Q ss_pred             hccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          198 LRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       198 l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++. .+.++..||||||||+++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       150 ~~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~  206 (552)
T TIGR03719       150 LRCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE  206 (552)
T ss_pred             CCCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence            6653 3567889999999999999999999999999999999999999999999865

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=6.7e-29  Score=239.10  Aligned_cols=166  Identities=14%  Similarity=0.034  Sum_probs=119.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      |.+|+++||++.|++  +.  +|+|+||+|++|+++||+||||||||||||+|+|+++   |++|+ .+++..   ..+.
T Consensus         1 m~~l~i~~ls~~~~~--~~--il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~   70 (635)
T PRK11147          1 MSLISIHGAWLSFSD--AP--LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR   70 (635)
T ss_pred             CcEEEEeeEEEEeCC--ce--eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence            458999999999987  34  5599999999999999999999999999999999998   99998 343321   1222


Q ss_pred             EEecCCCCCCCccCCcccCh------------------------------HHHHHh---cC-CCCCccHHHHHHHHHhhc
Q 025293          154 VLPMDGFHLYLSQLDAMEDP------------------------------KEAHAR---RG-APWTFNPLLLLNCLKNLR  199 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~------------------------------~~~~~~---~~-~~~~~~~~~~~~~l~~l~  199 (255)
                       +.+....  ....++.+..                              ......   .. .........+..+++.++
T Consensus        71 -l~q~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg  147 (635)
T PRK11147         71 -LQQDPPR--NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG  147 (635)
T ss_pred             -eccCCCC--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence             1111100  0000111100                              000000   00 000111234667888888


Q ss_pred             ccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       200 ~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +..+.++..|||||+|||++|++|+.+|+||||||||++||+.++..+.++|.+
T Consensus       148 l~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~  201 (635)
T PRK11147        148 LDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT  201 (635)
T ss_pred             CCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh
Confidence            877888999999999999999999999999999999999999999999999865

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.9e-29  Score=218.69  Aligned_cols=173  Identities=16%  Similarity=0.134  Sum_probs=122.0

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC---
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~---  147 (255)
                      ...+|+++||++.|++  +.  +|+++||+|.+|++++|+|+||||||||+++|+|+++..  .|++|+ .+++...   
T Consensus        42 ~~~~l~i~nl~~~~~~--~~--iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~  117 (305)
T PRK14264         42 GDAKLSVEDLDVYYGD--DH--ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD  117 (305)
T ss_pred             CCceEEEEEEEEEeCC--ee--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence            3458999999999986  33  559999999999999999999999999999999997400  147898 4443211   


Q ss_pred             -------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcC------------CCC-CccHHHHHHHHHhhccc------
Q 025293          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------APW-TFNPLLLLNCLKNLRNQ------  201 (255)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~-~~~~~~~~~~l~~l~~~------  201 (255)
                             ...+++ +..+.. ++.  .++.+++.+.....+            ... ......+.++++.+++.      
T Consensus       118 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  193 (305)
T PRK14264        118 GVNLVELRKRVGM-VFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR  193 (305)
T ss_pred             cccHHHHhhceEE-EccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence                   112344 333221 111  255555443222111            000 01122345666666652      


Q ss_pred             CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       202 ~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.++..||+||+||+++|++|+.+|+|||+||||++||+.++..+.++|.+.
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~  246 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEEL  246 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            25667899999999999999999999999999999999999999999998753

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=4.8e-29  Score=230.74  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=120.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      ++++++||++.|++.. ...+|+|+||+|.+|+++||+|||||||||||++|+|+++   |++|+ .+++...     . 
T Consensus        20 ~mL~lknL~~~~~~~~-~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~-   89 (549)
T PRK13545         20 PFDKLKDLFFRSKDGE-YHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L-   89 (549)
T ss_pred             ceeEEEEEEEecCCCc-cceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e-
Confidence            4789999999997632 1125699999999999999999999999999999999998   89998 3443210     1 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl  232 (255)
                      +.+...  ....+++.+++.+.....+............+++.+++.  .+.++..|||||+||+++|++|+.+|++|||
T Consensus        90 i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL  167 (549)
T PRK13545         90 IAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI  167 (549)
T ss_pred             EEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            111111  111245555544322222221111122345677777764  4577889999999999999999999999999


Q ss_pred             cCCCCCCChhHHHHHHHHHHh
Q 025293          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 Dep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+..+..+.++|.+
T Consensus       168 DEPTsgLD~~sr~~LlelL~e  188 (549)
T PRK13545        168 DEALSVGDQTFTKKCLDKMNE  188 (549)
T ss_pred             ECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999865

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=8.3e-29  Score=238.30  Aligned_cols=163  Identities=17%  Similarity=0.072  Sum_probs=118.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEE
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (255)
                      ||+++||+++|++  +.  +|+|+||+|.+|+++||+||||||||||||+|+|+++   |++|+ .+++.   ..+|+ +
T Consensus         1 ~i~i~nls~~~g~--~~--~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~---~~i~~-~   69 (638)
T PRK10636          1 MIVFSSLQIRRGV--RV--LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGN---WQLAW-V   69 (638)
T ss_pred             CEEEEEEEEEeCC--ce--eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence            5889999999987  34  4599999999999999999999999999999999988   99998 34432   12333 3


Q ss_pred             ecCCCCCCCccCCcccChH-----------------------HHHHhcC----CCCCccHHHHHHHHHhhccc---CCcc
Q 025293          156 PMDGFHLYLSQLDAMEDPK-----------------------EAHARRG----APWTFNPLLLLNCLKNLRNQ---GSVY  205 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~-----------------------~~~~~~~----~~~~~~~~~~~~~l~~l~~~---~~~~  205 (255)
                      .+......   .+....+.                       ......+    .........+..+++.+++.   .+.+
T Consensus        70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~  146 (638)
T PRK10636         70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP  146 (638)
T ss_pred             ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence            32211110   01111000                       0000000    00011123566788888885   3678


Q ss_pred             CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +..|||||+|||++|++|+.+|++|||||||++||+.+...+.++|.+
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~  194 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS  194 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999998864

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.96  E-value=6.3e-29  Score=212.08  Aligned_cols=162  Identities=17%  Similarity=0.155  Sum_probs=110.9

Q ss_pred             EEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           78 VEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      ++++|+++.|++.. +.  +++|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...        
T Consensus         1 l~i~~l~~~~~~~~~~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~   75 (238)
T cd03249           1 IEFKNVSFRYPSRPDVP--ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWL   75 (238)
T ss_pred             CeEEEEEEecCCCCCcc--ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHH
Confidence            46899999996421 22  5599999999999999999999999999999999998   99998 4544221        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHH---------HHHHhh--cc--cCCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNL--RN--QGSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~l--~~--~~~~~~~~lS~G~k  214 (255)
                      ....++ +..+.. +..  .++.+++.+     .... .......         ++++.+  ++  ....++..||+||+
T Consensus        76 ~~~i~~-~~q~~~-~~~--~tv~e~l~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~  145 (238)
T cd03249          76 RSQIGL-VSQEPV-LFD--GTIAENIRY-----GKPD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQK  145 (238)
T ss_pred             HhhEEE-ECCchh-hhh--hhHHHHhhc-----cCCC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHH
Confidence            112343 222211 111  132222211     0010 1111111         122222  11  13455789999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++++.+|+++|+||||++||+..++.+.++|.+.
T Consensus       146 qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~  185 (238)
T cd03249         146 QRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRA  185 (238)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998753

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=2.5e-29  Score=211.92  Aligned_cols=174  Identities=15%  Similarity=0.079  Sum_probs=123.4

Q ss_pred             CeEEecCchheehh-----------------hhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Q 025293           76 PVVEARCMDEVYDA-----------------LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK  138 (255)
Q Consensus        76 ~~l~v~~lsk~y~~-----------------~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~  138 (255)
                      .++.++||+|.|.-                 ..+.+.++.|+||+|++|+++|++|+|||||||+||+|+|++.   |++
T Consensus         2 ~~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~   78 (325)
T COG4586           2 AMIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTS   78 (325)
T ss_pred             ceeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCC
Confidence            46777888777731                 1123557799999999999999999999999999999999997   998


Q ss_pred             Cc-cCCCCC-CC------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCC
Q 025293          139 AS-SFDSQV-KP------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS  208 (255)
Q Consensus       139 G~-~~~~~~-~~------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~  208 (255)
                      |. .+++.. ..      ...+.  .+..+.+..-+++..+.....+..+.++.+.-......+-+.+++.  .+.++..
T Consensus        79 G~v~V~G~~Pf~~~~~~~~~~~~--v~gqk~ql~Wdlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~  156 (325)
T COG4586          79 GKVRVNGKDPFRRREEYLRSIGL--VMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRK  156 (325)
T ss_pred             CeEEecCcCcchhHHHHHHHHHH--HhhhhheeeeechhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhh
Confidence            87 333321 11      01111  1111111111233444444445555555433334444555556665  6778899


Q ss_pred             CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||-|||.|+.+|.+|.++|+||+|||||.|||...+..+++++++.
T Consensus       157 LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~  202 (325)
T COG4586         157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEY  202 (325)
T ss_pred             ccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999763

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=6.4e-29  Score=258.10  Aligned_cols=172  Identities=15%  Similarity=0.176  Sum_probs=134.7

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ...|+++||+|.|++..+.  +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus       926 ~~~L~I~nLsK~y~~~~k~--aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred             CceEEEEeEEEEecCCCce--EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence            3589999999999632133  5699999999999999999999999999999999998   99999 4544321      


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       +...|. +.+.....  ..+++.+++.+.....+.........+.++++.+++.  .+.++..||||||||+++|+||+
T Consensus      1001 ~r~~IG~-~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257      1001 VRQSLGM-CPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred             HhhcEEE-EecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence             123565 44433222  2368888877765555543222334567788888876  46778899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++|||||||++||+.+++.++++|.+.
T Consensus      1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l 1107 (2272)
T TIGR01257      1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKY 1107 (2272)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999763

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.96  E-value=4.9e-29  Score=239.69  Aligned_cols=163  Identities=15%  Similarity=0.061  Sum_probs=120.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -++++||++.|+.....  +|+|+|++|++||++||+|+||||||||+|+|.|+..   |+.|+ .+++...        
T Consensus       471 ~I~~~nvsf~y~~~~~~--vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~l  545 (709)
T COG2274         471 EIEFENVSFRYGPDDPP--VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLASL  545 (709)
T ss_pred             eEEEEEEEEEeCCCCcc--hhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHHH
Confidence            59999999999875333  5599999999999999999999999999999999998   99998 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------ccCC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~~~----~~~~~lS~G~k  214 (255)
                      +..+|+ +.++++.+..   +..+|...     + .++...+.+.++++.-+         .+.+    .....||||||
T Consensus       546 R~~ig~-V~Q~~~Lf~g---SI~eNi~l-----~-~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQr  615 (709)
T COG2274         546 RRQVGY-VLQDPFLFSG---SIRENIAL-----G-NPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQR  615 (709)
T ss_pred             HhheeE-EcccchhhcC---cHHHHHhc-----C-CCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHH
Confidence            344665 6666654432   33332211     1 12223334433333322         2222    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||++..+|+||||||||+.||+.+.+.+.+-+.+.
T Consensus       616 QrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~  655 (709)
T COG2274         616 QRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI  655 (709)
T ss_pred             HHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.95  E-value=4.3e-29  Score=197.58  Aligned_cols=115  Identities=18%  Similarity=0.246  Sum_probs=95.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++|+++.|++  ..  +++++||++++||+++|+|+||||||||+++|+|+++   |++|             . +.+
T Consensus         1 l~~~~l~~~~~~--~~--~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G-------------~-i~~   59 (144)
T cd03221           1 IELENLSKTYGG--KL--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEG-------------I-VTW   59 (144)
T ss_pred             CEEEEEEEEECC--ce--EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCce-------------E-EEE
Confidence            468899999976  33  5599999999999999999999999999999999996   6555             3 333


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~  237 (255)
                      ++..                 ..++                       +++||+||+||+++|++++.+|+++|+|||++
T Consensus        60 ~~~~-----------------~i~~-----------------------~~~lS~G~~~rv~laral~~~p~illlDEP~~   99 (144)
T cd03221          60 GSTV-----------------KIGY-----------------------FEQLSGGEKMRLALAKLLLENPNLLLLDEPTN   99 (144)
T ss_pred             CCeE-----------------EEEE-----------------------EccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence            3310                 0111                       00099999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHh
Q 025293          238 FLDGGVWKDVSSMFDE  253 (255)
Q Consensus       238 ~LD~~~~~~l~~ll~~  253 (255)
                      +||+.++..+.+++.+
T Consensus       100 ~LD~~~~~~l~~~l~~  115 (144)
T cd03221         100 HLDLESIEALEEALKE  115 (144)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999999865

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.95  E-value=1.6e-28  Score=232.14  Aligned_cols=161  Identities=14%  Similarity=0.146  Sum_probs=120.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (255)
                      .|+++||+++|++. ++  +|+|+||+|++|++++|+||||||||||+++|+|+.+   |++|+ .+++...       +
T Consensus       334 ~I~~~~vsf~Y~~~-~~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr  407 (529)
T TIGR02868       334 TLELRDLSFGYPGS-PP--VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR  407 (529)
T ss_pred             eEEEEEEEEecCCC-Cc--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence            58999999999753 23  5599999999999999999999999999999999998   99998 4554221       1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~kq  215 (255)
                      ..+++ +.++.+-+.   -+..+|+.+     + .++...+++.++++..++.         .+.    ....|||||||
T Consensus       408 ~~i~~-V~Q~~~lF~---~TI~eNI~~-----g-~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ  477 (529)
T TIGR02868       408 RRISV-FAQDAHLFD---TTVRDNLRL-----G-RPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ  477 (529)
T ss_pred             hheEE-EccCccccc---ccHHHHHhc-----c-CCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence            23454 566555433   133333322     1 1223445555666654432         222    23469999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++||++..+|+|||+||||++||+.+.+.+.+.+.+
T Consensus       478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988865

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.8e-28  Score=218.60  Aligned_cols=172  Identities=14%  Similarity=0.115  Sum_probs=121.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc--CCCCCc-cCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-----  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~--~p~~G~-~~~~~~~-----  147 (255)
                      .+|+++|+++.|.+..+.  +|+|+||+|++||++||+|+||||||||+++|+|+....  .|++|+ .+++...     
T Consensus        79 ~~i~~~nls~~y~~~~~~--~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKH--VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             ceEEEEeeEEEecCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            589999999999642223  569999999999999999999999999999999998400  046888 4443321     


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc-HHHHHHHHHhhccc------CCccCCCCCccccc
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~l~~~------~~~~~~~lS~G~kq  215 (255)
                           ....++ +.++...+ .  .++.+++.+.....+...... ......+++.+++.      ...+...|||||+|
T Consensus       157 ~~~~lr~~i~~-v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq  232 (329)
T PRK14257        157 SSLELRTRIGM-VFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ  232 (329)
T ss_pred             chHhhhccEEE-EecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence                 123444 43333222 1  355566554332222211111 11234556666542      35677899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+++|||++.+|+|||+||||++||+.+...+.++|.+
T Consensus       233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~  270 (329)
T PRK14257        233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE  270 (329)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998865

>PRK13409 putative ATPase RIL; Provisional

Probab=99.95  E-value=1.7e-28  Score=233.68  Aligned_cols=158  Identities=13%  Similarity=0.088  Sum_probs=122.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .++++++|+++.|++  .   .|+++||+|++||++||+||||||||||+|+|+|+++   |++|++ ++     ..+++
T Consensus       338 ~~~l~~~~ls~~~~~--~---~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y  404 (590)
T PRK13409        338 ETLVEYPDLTKKLGD--F---SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY  404 (590)
T ss_pred             ceEEEEcceEEEECC--E---EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence            468999999999976  2   3599999999999999999999999999999999998   999973 32     13444


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                       +.+....  ...+++.+++.......  .   ......++++.+++.  .+.++..|||||+|||++|++|+.+|++||
T Consensus       405 -~~Q~~~~--~~~~tv~e~l~~~~~~~--~---~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL  476 (590)
T PRK13409        405 -KPQYIKP--DYDGTVEDLLRSITDDL--G---SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL  476 (590)
T ss_pred             -ecccccC--CCCCcHHHHHHHHhhhc--C---hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence             3332211  12245555444321111  1   122346778888775  467889999999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||++||+.++..+.++|.+
T Consensus       477 LDEPt~~LD~~~~~~l~~~l~~  498 (590)
T PRK13409        477 LDEPSAHLDVEQRLAVAKAIRR  498 (590)
T ss_pred             EeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999875

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.8e-28  Score=192.89  Aligned_cols=172  Identities=15%  Similarity=0.146  Sum_probs=125.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cC--CCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SF--DSQV----  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~--~~~~----  146 (255)
                      .+.+++.+++|.|+...    ..+||||++.+||++||+|++||||||||++|++-+.   |+.|+  +.  ++..    
T Consensus         4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~   76 (258)
T COG4107           4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY   76 (258)
T ss_pred             CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence            36899999999999843    4599999999999999999999999999999999998   99998  21  1111    


Q ss_pred             ----------CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhcccC---CccCCCCCcc
Q 025293          147 ----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQG---SVYAPSFDHG  212 (255)
Q Consensus       147 ----------~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G  212 (255)
                                .+.++|. +.++..+--....+...|+-+..-..|.. .........++++.+.+..   +-.+..||||
T Consensus        77 ~msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG  155 (258)
T COG4107          77 TMSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG  155 (258)
T ss_pred             hhchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence                      1345675 55443322221122233333222222210 0112234567888888774   3457799999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+.||+.|+..|+++++||||-|||...+..+.+++.-.
T Consensus       156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgL  197 (258)
T COG4107         156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGL  197 (258)
T ss_pred             HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988643

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.1e-28  Score=226.19  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=129.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----  149 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~----  149 (255)
                      +++++++|++|+|++..    +|+++||++.+||++||+|.||||||||+|+|+|.++   |++|+ .++++....    
T Consensus         6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~   78 (500)
T COG1129           6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR   78 (500)
T ss_pred             cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence            46899999999999843    7799999999999999999999999999999999998   99999 566543211    


Q ss_pred             ---CeEE-EEecCCCCCCCccCCcccChHHHHHhc---CC-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          150 ---DVAT-VLPMDGFHLYLSQLDAMEDPKEAHARR---GA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       150 ---~~g~-~i~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                         ..|. +|++.--..  +++++.+|+...+...   ++ ...........+++.+++.  .+..+..||.||||-|+|
T Consensus        79 ~A~~~GI~~V~QEl~L~--p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI  156 (500)
T COG1129          79 DALAAGIATVHQELSLV--PNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI  156 (500)
T ss_pred             HHHhCCcEEEeechhcc--CCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence               1232 133322211  2367766664433221   21 1111223456778877764  667889999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+|+..+++||||||||+.|+....+.+.+++.+.
T Consensus       157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~L  191 (500)
T COG1129         157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRL  191 (500)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988753

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.95  E-value=1.3e-28  Score=209.73  Aligned_cols=161  Identities=15%  Similarity=0.168  Sum_probs=110.6

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++|+++.|++. +.  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        .
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~   74 (236)
T cd03253           1 IEFENVTFAYDPG-RP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR   74 (236)
T ss_pred             CEEEEEEEEeCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence            4689999999631 23  5599999999999999999999999999999999998   99998 4444211        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHH---------HHHHhhccc----CCccCCCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQ----GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~l~~l~~~----~~~~~~~lS~G~kq  215 (255)
                      ...++ +..+.. +..  .++.+++.+.     .. ........         ..++.+...    ...++..||+||+|
T Consensus        75 ~~i~~-~~q~~~-~~~--~tv~~nl~~~-----~~-~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~  144 (236)
T cd03253          75 RAIGV-VPQDTV-LFN--DTIGYNIRYG-----RP-DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ  144 (236)
T ss_pred             hhEEE-ECCCCh-hhc--chHHHHHhhc-----CC-CCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence            12343 322221 111  2333322111     01 11111111         122222111    23456789999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++|+.+|+++|+||||++||+.++..+.++|.+.
T Consensus       145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~  183 (236)
T cd03253         145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDV  183 (236)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998653

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.95  E-value=1.6e-28  Score=230.20  Aligned_cols=168  Identities=13%  Similarity=0.128  Sum_probs=118.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      .++|+++||++.|.    .  +++++||+|++||++||+||||||||||+++|+|+++   |++|+ .+++....     
T Consensus       248 ~~~i~~~~l~~~~~----~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~  318 (491)
T PRK10982        248 EVILEVRNLTSLRQ----P--SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNAN  318 (491)
T ss_pred             CcEEEEeCcccccC----c--ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHH
Confidence            35899999999842    2  5699999999999999999999999999999999998   99999 45542211     


Q ss_pred             ----CCeEEEEecCCC--CCCCccCCcccC-----hHHHHHhcCC-CCCccHHHHHHHHHhhccc---CCccCCCCCccc
Q 025293          149 ----PDVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (255)
Q Consensus       149 ----~~~g~~i~~~~~--~~~~~~l~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~  213 (255)
                          ...++ +..+..  .++ ..++..++     ........+. ........+..+++.+++.   .+.++..|||||
T Consensus       319 ~~~~~~i~~-~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  396 (491)
T PRK10982        319 EAINHGFAL-VTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGN  396 (491)
T ss_pred             HHHHCCCEE-cCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHH
Confidence                11333 222210  001 11222111     1110000111 1111123456777777773   367889999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|++++.+|+||||||||++||+.++..+.+++.+
T Consensus       397 ~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~  436 (491)
T PRK10982        397 QQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE  436 (491)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999865

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.95  E-value=5.1e-28  Score=203.90  Aligned_cols=154  Identities=12%  Similarity=0.071  Sum_probs=107.4

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C--------
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P--------  148 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~--------  148 (255)
                      .+.|+.+.|++. ..  +++|+||+|++|++++|+|||||||||||++|+|+++   |++|+ .+++... .        
T Consensus         2 ~~~~~~~~~~~~-~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (218)
T cd03290           2 QVTNGYFSWGSG-LA--TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS   75 (218)
T ss_pred             eeeeeEEecCCC-Cc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence            467899999753 23  5699999999999999999999999999999999998   99998 4444311 0        


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcc
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG  212 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G  212 (255)
                         ...++ +..+.. +..  .++.+++..       ...........+++.+++.             ...++..||+|
T Consensus        76 ~~~~~i~~-~~q~~~-~~~--~t~~~nl~~-------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G  144 (218)
T cd03290          76 RNRYSVAY-AAQKPW-LLN--ATVEENITF-------GSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG  144 (218)
T ss_pred             hhcceEEE-EcCCCc-ccc--ccHHHHHhh-------cCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence               11333 222221 111  233332221       1111112223333333321             13467899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      |+||+++|++++.+|++||+||||++||+.++..+.+
T Consensus       145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  181 (218)
T cd03290         145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ  181 (218)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence            9999999999999999999999999999999998887

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.95  E-value=1.7e-28  Score=210.94  Aligned_cols=160  Identities=18%  Similarity=0.154  Sum_probs=113.9

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-------C
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-------P  149 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-------~  149 (255)
                      +++||++.  .      +|+|+||+|++|++++|+|+||||||||+++|+|++    |.+|+ .+++... .       .
T Consensus         2 ~~~~l~~~--~------~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~   69 (248)
T PRK03695          2 QLNDVAVS--T------RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR   69 (248)
T ss_pred             cccccchh--c------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence            57888874  1      569999999999999999999999999999999998    66898 4544321 1       1


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhcc--
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGL--  225 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~--  225 (255)
                      ..++ +.+......  .+++.++..+... ...........+.++++.+++..  +..+..||+||+||+++|++|+.  
T Consensus        70 ~i~~-v~q~~~~~~--~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~  145 (248)
T PRK03695         70 HRAY-LSQQQTPPF--AMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW  145 (248)
T ss_pred             heEE-ecccCccCC--CccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence            2344 333221111  1344443332211 11111111234567888887753  57788999999999999999997  


Q ss_pred             -----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 -----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 -----~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                           +|++||+||||++||+..+..+.+++.+.
T Consensus       146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~  179 (248)
T PRK03695        146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSEL  179 (248)
T ss_pred             cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence                 67999999999999999999999998753

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-28  Score=229.83  Aligned_cols=164  Identities=17%  Similarity=0.162  Sum_probs=118.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      -.|+++||+|.|...+ .+.+|+|+||+|++||++|||||||+||||+.++|..+..   |++|+ .+++...       
T Consensus       464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~  539 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY  539 (716)
T ss_pred             ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence            3699999999998742 4456799999999999999999999999999999999998   99998 4555322       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH---------HHHhhcccCC----ccCCCCCccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQGS----VYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~l~~~~~----~~~~~lS~G~  213 (255)
                       +..+|. +.+....+.   -++.+|+.+     |.. ....++++.         .+.++-.+-+    .+..+|||||
T Consensus       540 lr~~Ig~-V~QEPvLFs---~sI~eNI~Y-----G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ  609 (716)
T KOG0058|consen  540 LRRKIGL-VGQEPVLFS---GSIRENIAY-----GLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ  609 (716)
T ss_pred             HHHHeee-eeccceeec---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence             123444 333322111   133333322     222 223333332         2223322222    3345899999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+||||||+.+|.||||||-|+.||.++...+.+.++.
T Consensus       610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~  649 (716)
T KOG0058|consen  610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR  649 (716)
T ss_pred             HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999988864

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=2.1e-28  Score=193.51  Aligned_cols=173  Identities=18%  Similarity=0.168  Sum_probs=126.0

Q ss_pred             CeEEecCchheehhhh---cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc--CC-CCC---
Q 025293           76 PVVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FD-SQV---  146 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~---~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~--~~-~~~---  146 (255)
                      ..|.++|++|+|--..   -.+.+++|+||+++.||++++-||+|+|||||||+|.|.+.   |++|++  .. +..   
T Consensus         3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl   79 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL   79 (235)
T ss_pred             ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence            4688999999993211   23446699999999999999999999999999999999998   999982  11 111   


Q ss_pred             -----------CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcc
Q 025293          147 -----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHG  212 (255)
Q Consensus       147 -----------~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G  212 (255)
                                 .+.++|+ +++.-..++.  ....+-........|.+.+........++.++.++.   ...+..||||
T Consensus        80 ~~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGG  156 (235)
T COG4778          80 VTAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG  156 (235)
T ss_pred             hccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCc
Confidence                       0123443 3222111111  122222222333445554444556677888888874   4567899999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+|||.|||.++.+-+||+|||||+.||..++..+.++|.++
T Consensus       157 EqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~  198 (235)
T COG4778         157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA  198 (235)
T ss_pred             hheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999875

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.95  E-value=4.7e-28  Score=235.34  Aligned_cols=161  Identities=14%  Similarity=0.107  Sum_probs=120.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +|+|+||+|++||++||+|+||||||||+|+|+|+.+   |++|+ .+++...        
T Consensus       451 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  525 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV  525 (686)
T ss_pred             eEEEEEEEEEcCCCCcc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence            58999999999643234  4599999999999999999999999999999999998   99999 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k  214 (255)
                      +..+|. +.++.+.+..   +..+|+.       +......+++.++++..++.         .+.    ....||||||
T Consensus       526 r~~i~~-v~Q~~~lf~g---TI~eNi~-------~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr  594 (686)
T TIGR03797       526 RRQLGV-VLQNGRLMSG---SIFENIA-------GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR  594 (686)
T ss_pred             HhccEE-EccCCccCcc---cHHHHHh-------cCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence            234565 6665554321   3333332       21113344555555554432         222    2357999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||+..+|++|||||||++||+.+.+++.+.+..
T Consensus       595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~  633 (686)
T TIGR03797       595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER  633 (686)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988864

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.95  E-value=3.2e-28  Score=232.43  Aligned_cols=163  Identities=14%  Similarity=0.105  Sum_probs=120.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++..++  +|+|+||+|++|+.++|+|+||||||||+++|+|+++   |++|+ .+++...        
T Consensus       341 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~  415 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL  415 (582)
T ss_pred             eEEEEEEEEecCCCCCc--cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence            59999999999753233  4599999999999999999999999999999999998   99999 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCcc----CCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~k  214 (255)
                      ...+++ +.++.+.+.   -+..+|+..     +.++....+++.++++..++.         .+..    ...||||||
T Consensus       416 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr  486 (582)
T PRK11176        416 RNQVAL-VSQNVHLFN---DTIANNIAY-----ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR  486 (582)
T ss_pred             HhhceE-EccCceeec---chHHHHHhc-----CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence            123454 555554332   133332211     112234455555555554432         2222    356999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||++..+|+++|+||||++||+.+...+.+.+.+
T Consensus       487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~  525 (582)
T PRK11176        487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.95  E-value=1.1e-27  Score=206.85  Aligned_cols=163  Identities=13%  Similarity=0.072  Sum_probs=112.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ...|+++|+++.|++..+.  +++++||+|++|+++||+|+||||||||+++|+|+++   |++|+ .+++...      
T Consensus        17 ~~~i~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~~   91 (257)
T cd03288          17 GGEIKIHDLCVRYENNLKP--VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPLH   91 (257)
T ss_pred             CceEEEEEEEEEeCCCCCc--ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCHH
Confidence            4579999999999752122  5699999999999999999999999999999999998   99998 4444221      


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH---------HHHhh--ccc--CCccCCCCCcc
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNL--RNQ--GSVYAPSFDHG  212 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~l--~~~--~~~~~~~lS~G  212 (255)
                        ...+++ +..+.. ++.  .++.+       +..............         .++.+  ++.  ...+...||+|
T Consensus        92 ~~~~~i~~-v~q~~~-l~~--~tv~~-------nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G  160 (257)
T cd03288          92 TLRSRLSI-ILQDPI-LFS--GSIRF-------NLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVG  160 (257)
T ss_pred             HHhhhEEE-ECCCCc-ccc--cHHHH-------hcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHH
Confidence              112343 332221 111  12211       111111111111122         22222  111  23456789999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+||+++|++++.+|++||+||||++||+..+..+.+++.+
T Consensus       161 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  201 (257)
T cd03288         161 QRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT  201 (257)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998875

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.95  E-value=7.1e-28  Score=209.73  Aligned_cols=160  Identities=14%  Similarity=0.183  Sum_probs=114.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------C
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (255)
                      |+++||++.|.+....  +|+|+||+|++||++||+|+||||||||+++|+|++    +++|+ .+++...        .
T Consensus         3 i~~~nls~~~~~~~~~--~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr   76 (275)
T cd03289           3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR   76 (275)
T ss_pred             EEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence            7899999999532133  569999999999999999999999999999999998    67888 4554221        1


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccC-----------CCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~-----------~~lS~G~kq  215 (255)
                      ..+++ +..+.. ++.  .++.+++.       .........+..+++.+++..  +..+           ..||+||+|
T Consensus        77 ~~i~~-v~q~~~-lf~--~tv~~nl~-------~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q  145 (275)
T cd03289          77 KAFGV-IPQKVF-IFS--GTFRKNLD-------PYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ  145 (275)
T ss_pred             hhEEE-ECCCcc-cch--hhHHHHhh-------hccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence            12343 333222 111  13322221       111122345566667666541  2222           349999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++++.+|+|||+||||++||+.++..+.++|.+.
T Consensus       146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~  184 (275)
T cd03289         146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQA  184 (275)
T ss_pred             HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=3.6e-28  Score=228.30  Aligned_cols=167  Identities=14%  Similarity=0.122  Sum_probs=119.0

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .+++++|++..      .  +++|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus       256 ~~l~~~~~~~~------~--~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~  324 (501)
T PRK11288        256 VRLRLDGLKGP------G--LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD  324 (501)
T ss_pred             cEEEEeccccC------C--cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence            46899999732      2  5699999999999999999999999999999999998   99999 44442211      


Q ss_pred             ---CCeEEEEecCCC-CCCCccCCcccChHHHHHhc----CC--CCCccHHHHHHHHHhhccc---CCccCCCCCccccc
Q 025293          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~~~----~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kq  215 (255)
                         ..+++ +.++.. ......+++.++..+.....    +.  ..........++++.+++.   .+.++..|||||||
T Consensus       325 ~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  403 (501)
T PRK11288        325 AIRAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ  403 (501)
T ss_pred             HHhCCCEE-cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence               12343 333211 00111134444433211110    10  0111123456788888873   46778899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l  442 (501)
T PRK11288        404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYEL  442 (501)
T ss_pred             HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998653

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.95  E-value=7.8e-28  Score=206.47  Aligned_cols=143  Identities=15%  Similarity=0.139  Sum_probs=102.2

Q ss_pred             ccccccc-----CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCccc
Q 025293           98 SALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAME  171 (255)
Q Consensus        98 ~~isl~i-----~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~  171 (255)
                      ++++|++     .+||+++|+||||||||||+++|+|+++   |++|+ .+++.    .+++ +.+.....  ...++.+
T Consensus        11 ~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~-~~q~~~~~--~~~tv~e   80 (246)
T cd03237          11 GEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSY-KPQYIKAD--YEGTVRD   80 (246)
T ss_pred             CcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEE-ecccccCC--CCCCHHH
Confidence            5555555     5799999999999999999999999998   99998 34432    3343 22221111  1134444


Q ss_pred             ChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      ++........    .......++++.+++.  .+.++..|||||+||+++|++|+.+|+++|+||||++||+..+..+.+
T Consensus        81 ~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~  156 (246)
T cd03237          81 LLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASK  156 (246)
T ss_pred             HHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHH
Confidence            3332211111    0112245667777765  356788999999999999999999999999999999999999999999


Q ss_pred             HHHhh
Q 025293          250 MFDEK  254 (255)
Q Consensus       250 ll~~~  254 (255)
                      +|.+.
T Consensus       157 ~l~~~  161 (246)
T cd03237         157 VIRRF  161 (246)
T ss_pred             HHHHH
Confidence            88753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.95  E-value=6.6e-28  Score=235.15  Aligned_cols=162  Identities=20%  Similarity=0.139  Sum_probs=120.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +|+|+||+|++||.+||+|+||||||||+|+|+|+++   |++|+ .+++...        
T Consensus       477 ~I~~~~vsf~y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  551 (710)
T TIGR03796       477 YVELRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREVL  551 (710)
T ss_pred             eEEEEEEEEecCCCCCC--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHHH
Confidence            58999999999863334  4599999999999999999999999999999999998   99998 5554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k  214 (255)
                      +..+|+ +.++.+.+.   -+..+|+..     + .++...+++.++++..++.         .+    .....||||||
T Consensus       552 r~~i~~-v~Q~~~lf~---gTi~eNi~l-----~-~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQr  621 (710)
T TIGR03796       552 ANSVAM-VDQDIFLFE---GTVRDNLTL-----W-DPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQR  621 (710)
T ss_pred             HhheeE-EecCChhhh---ccHHHHhhC-----C-CCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHH
Confidence            234565 565554332   133333221     1 1223445555555554432         22    22457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|++|||||||++||+.+.+++.+.+.+
T Consensus       622 QRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       622 QRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             HHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999988764

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.95  E-value=5.8e-28  Score=226.94  Aligned_cols=166  Identities=13%  Similarity=0.108  Sum_probs=120.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------  147 (255)
                      ++++++||++     .    +++|+||+|.+||++||+||||||||||+|+|+|+++   |++|+ .+++. +.      
T Consensus       256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~  323 (501)
T PRK10762        256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD  323 (501)
T ss_pred             cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence            5799999984     1    4599999999999999999999999999999999998   99999 45442 21      


Q ss_pred             --CCCeEEEEecCCC-CCCCccCCcccChHHHHH-hc----C-CCCCccHHHHHHHHHhhccc---CCccCCCCCccccc
Q 025293          148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (255)
Q Consensus       148 --~~~~g~~i~~~~~-~~~~~~l~~~~~~~~~~~-~~----~-~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kq  215 (255)
                        ...+|+ +.+... ......+++.++..+... ..    + .........+.++++.+++.   .+.++..|||||||
T Consensus       324 ~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekq  402 (501)
T PRK10762        324 GLANGIVY-ISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQ  402 (501)
T ss_pred             HHHCCCEE-ecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHH
Confidence              113455 444321 001112455444432111 00    1 11111123466788888883   46778899999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++|+.+|++|||||||++||+.+++.+.++|.+.
T Consensus       403 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~  441 (501)
T PRK10762        403 KVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQF  441 (501)
T ss_pred             HHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=6.2e-28  Score=217.80  Aligned_cols=170  Identities=16%  Similarity=0.143  Sum_probs=131.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +..+++++++|.|++.    .++++|||+|++|||+||+|+||||||||+++|.|+++   |++|+ +++++...     
T Consensus         2 ~~~l~~~~itK~f~~~----~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~   74 (501)
T COG3845           2 EPALEMRGITKRFPGV----VANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR   74 (501)
T ss_pred             CceEEEeccEEEcCCE----EecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence            3578999999999973    38899999999999999999999999999999999998   99999 66665322     


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhc-C--CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~--~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                          --+|. +++ .|.+.. .+|+.+|+....... +  +........+.++.+.+++.  .+.++..||-|+||||.|
T Consensus        75 dA~~~GIGM-VhQ-HF~Lv~-~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI  151 (501)
T COG3845          75 DAIRLGIGM-VHQ-HFMLVP-TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI  151 (501)
T ss_pred             HHHHcCCcE-Eee-cccccc-ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence                12454 332 333322 367777765433221 1  01112234456777777776  567889999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .++|..++++|||||||+.|-|...+++.+++...
T Consensus       152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l  186 (501)
T COG3845         152 LKALYRGARLLILDEPTAVLTPQEADELFEILRRL  186 (501)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999988653

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.95  E-value=1.1e-27  Score=230.93  Aligned_cols=173  Identities=16%  Similarity=0.143  Sum_probs=127.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++|+++.|++......+++|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~   79 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA   79 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence            489999999999642111125699999999999999999999999999999999998   99999 5554321       


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la  220 (255)
                           ....++ +.++.. +. ..+++.++..+.....+...........++++.+++..  +..+..||+||+||+++|
T Consensus        80 ~~~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA  156 (648)
T PRK10535         80 LAQLRREHFGF-IFQRYH-LL-SHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA  156 (648)
T ss_pred             HHHHHhccEEE-EeCCcc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence                 123454 443332 21 11355555544332223222222334567788877753  567789999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|++||+|||+.+||+.+++.+.+++.+.
T Consensus       157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l  190 (648)
T PRK10535        157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQL  190 (648)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.9e-28  Score=198.18  Aligned_cols=167  Identities=15%  Similarity=0.195  Sum_probs=113.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC---C---
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---P---  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~---~---  149 (255)
                      ||+++||+++..+  ++++  ++++|++++||+++|+||||||||||||.|+|.+.   |++|+ .+++....   +   
T Consensus         1 mi~a~nls~~~~G--r~ll--~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l   73 (259)
T COG4559           1 MIRAENLSYSLAG--RRLL--DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL   73 (259)
T ss_pred             CeeeeeeEEEeec--ceec--cCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence            5899999999988  5555  99999999999999999999999999999999998   99998 44432210   0   


Q ss_pred             --CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC--ccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                        ..+. ..++...-+  .+++.+-+...+.-.+-...  .+..-...++...+..  ..+....|||||+|||.+||.|
T Consensus        74 A~~raV-lpQ~s~laF--pFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL  150 (259)
T COG4559          74 ARHRAV-LPQNSSLAF--PFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL  150 (259)
T ss_pred             HHHhhh-cccCccccc--ceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence              1121 222111000  02333322222211111111  1111234555555543  3456689999999999999998


Q ss_pred             cc------CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~------~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.      .+++|+|||||+.||...+..+..+..+
T Consensus       151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~  186 (259)
T COG4559         151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQ  186 (259)
T ss_pred             HHccCCCCCCceEEecCCccccchHHHHHHHHHHHH
Confidence            54      3458899999999999999999887754

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=8.7e-28  Score=236.41  Aligned_cols=164  Identities=16%  Similarity=0.160  Sum_probs=116.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|...+ .+.+|+|+||.|++|+.++|+|||||||||++++|.++..   |++|+ .+++...        
T Consensus       350 ~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~l  425 (1228)
T KOG0055|consen  350 EIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKWL  425 (1228)
T ss_pred             ceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHHH
Confidence            689999999998742 3557799999999999999999999999999999999998   99988 4444321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHh---------hccc----CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQ----GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~----~~~~~~~lS~G~k  214 (255)
                      +..+|. +.+....+.   .++.+|+.+     |- ++....++.++.+.         +-.+    .-....+||||||
T Consensus       426 r~~igl-V~QePvlF~---~tI~eNI~~-----G~-~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQK  495 (1228)
T KOG0055|consen  426 RSQIGL-VSQEPVLFA---TTIRENIRY-----GK-PDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQK  495 (1228)
T ss_pred             HhhcCe-eeechhhhc---ccHHHHHhc-----CC-CcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHHH
Confidence            223444 333322111   233332221     11 12222222222221         1111    2233457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++|||+|+.+|+||||||||++||+.+...+.+.|++.
T Consensus       496 QRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~  535 (1228)
T KOG0055|consen  496 QRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKA  535 (1228)
T ss_pred             HHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998763

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.95  E-value=5.9e-28  Score=203.06  Aligned_cols=143  Identities=13%  Similarity=0.147  Sum_probs=103.1

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc--CCCCCCCCCeEEEEecCCCCCCCccCCcccCh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~--~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~  173 (255)
                      +++|+||+|++|++++|+||||||||||+|+|+|+++   |++|++  +++...  ..+.    .  ....+.+++.++.
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~--~~~~----~--~~l~~~ltv~enl   70 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDAL--PLGA----N--SFILPGLTGEENA   70 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCcee--cccc----c--cccCCcCcHHHHH
Confidence            5699999999999999999999999999999999998   999983  333211  1111    1  1111224666666


Q ss_pred             HHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293          174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      .+.....+....   .....+.+.+++.  .+.++..||+||+||+++|++++.+|+++|+|||++++|+..+..+.+++
T Consensus        71 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l  147 (213)
T PRK15177         71 RMMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL  147 (213)
T ss_pred             HHHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence            554443332211   1111222333332  45678899999999999999999999999999999999999999999876


Q ss_pred             H
Q 025293          252 D  252 (255)
Q Consensus       252 ~  252 (255)
                      .
T Consensus       148 ~  148 (213)
T PRK15177        148 A  148 (213)
T ss_pred             H
Confidence            4

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.95  E-value=1e-27  Score=225.67  Aligned_cols=166  Identities=19%  Similarity=0.177  Sum_probs=118.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      .++|+++|+++   .      +|+|+||+|++|+++||+||||||||||+|+|+|+++   |++|+ .+++... .    
T Consensus       266 ~~~l~~~~l~~---~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~  333 (510)
T PRK15439        266 APVLTVEDLTG---E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTA  333 (510)
T ss_pred             CceEEEeCCCC---C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHH
Confidence            45899999983   1      3599999999999999999999999999999999998   99999 4444311 1    


Q ss_pred             ----CCeEEEEecCC--CCCCCccCCcccChHHHH-HhcCC--CCCccHHHHHHHHHhhccc---CCccCCCCCcccccc
Q 025293          149 ----PDVATVLPMDG--FHLYLSQLDAMEDPKEAH-ARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP  216 (255)
Q Consensus       149 ----~~~g~~i~~~~--~~~~~~~l~~~~~~~~~~-~~~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqr  216 (255)
                          ..+++ +.+..  ..++ ..+++.++..... .....  ........+.++++.+++.   .+.++..||||||||
T Consensus       334 ~~~~~~i~~-v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqr  411 (510)
T PRK15439        334 QRLARGLVY-LPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQK  411 (510)
T ss_pred             HHHhCCcEE-CCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHH
Confidence                12343 33221  0111 1123333322110 00111  1111123456788888885   367788999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++|+.+|++|||||||++||+.+++.+.++|.+.
T Consensus       412 l~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l  449 (510)
T PRK15439        412 VLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSI  449 (510)
T ss_pred             HHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.95  E-value=1e-27  Score=224.06  Aligned_cols=166  Identities=16%  Similarity=0.077  Sum_probs=119.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      |.+|.++|+++.|++  +.++  +|+||+|.+|+++||||+||||||||||+|+|.+.   |++|++ ...   ...+++
T Consensus         1 m~~i~~~~ls~~~g~--~~l~--~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~---~~~v~~   70 (530)
T COG0488           1 MSMITLENLSLAYGD--RPLL--ENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPK---GLRVGY   70 (530)
T ss_pred             CceEEEeeeEEeeCC--ceee--cCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecC---CceEEE
Confidence            568999999999987  4554  99999999999999999999999999999999998   999973 221   113444


Q ss_pred             EEecCCCCCCCccCCcccChHH-------HH----Hhc------------------C-CCCCccHHHHHHHHHhhcccC-
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKE-------AH----ARR------------------G-APWTFNPLLLLNCLKNLRNQG-  202 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~-------~~----~~~------------------~-~~~~~~~~~~~~~l~~l~~~~-  202 (255)
                       +.++......  .++.+.+..       ..    ...                  . +.......+...++..+++.. 
T Consensus        71 -l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~  147 (530)
T COG0488          71 -LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE  147 (530)
T ss_pred             -eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence             3333221110  122111100       00    000                  0 000001134456677777766 


Q ss_pred             CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.++..||||||.||++|++|..+|++|||||||+.||..+...+.++|..
T Consensus       148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~  198 (530)
T COG0488         148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR  198 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence            688999999999999999999999999999999999999999998888753

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.95  E-value=1.9e-27  Score=224.80  Aligned_cols=162  Identities=16%  Similarity=0.133  Sum_probs=119.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +++|+||+|++|++++|+||||||||||+|+|+|+.+   |++|+ .+++...        
T Consensus       320 ~i~~~~v~f~y~~~~~~--il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             eEEEEEEEEECCCCCcc--cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence            58999999999763233  4599999999999999999999999999999999998   99999 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k  214 (255)
                      ....++ +.++.+.+.   .+..+|...     +. .......+.++++..++.         .+    .....||||||
T Consensus       395 r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~~-~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~  464 (529)
T TIGR02857       395 RDQIAW-VPQHPFLFA---GTIAENIRL-----AR-PDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQA  464 (529)
T ss_pred             HhheEE-EcCCCcccC---cCHHHHHhc-----cC-CCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHH
Confidence            123555 555544332   233333322     11 122334444555544432         22    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~  503 (529)
T TIGR02857       465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA  503 (529)
T ss_pred             HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.95  E-value=8e-28  Score=200.72  Aligned_cols=151  Identities=14%  Similarity=0.150  Sum_probs=120.7

Q ss_pred             ccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEec-CCCCCCCccCCcc
Q 025293           93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPM-DGFHLYLSQLDAM  170 (255)
Q Consensus        93 ~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~-~~~~~~~~~l~~~  170 (255)
                      .+.+|+||||++++||.+||+|+||||||||||+|+|.++   |++|+ .+.+++.     ..+.+ .||.   ++++..
T Consensus        39 ~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~-----~li~lg~Gf~---pelTGr  107 (249)
T COG1134          39 EFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVA-----PLIELGAGFD---PELTGR  107 (249)
T ss_pred             eEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEe-----hhhhcccCCC---cccchH
Confidence            3557899999999999999999999999999999999999   99998 4444322     11111 2332   237888


Q ss_pred             cChHHHHHhcCCCCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH
Q 025293          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~  248 (255)
                      +|..+.....|+........+.++.+.-.+  ..+.+++.||.||+.|++++.+...+|+|||+||..+.-|+..+++-.
T Consensus       108 eNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~  187 (249)
T COG1134         108 ENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCL  187 (249)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHH
Confidence            999888888887655555556666665444  468899999999999999999999999999999999999999988887


Q ss_pred             HHHHhh
Q 025293          249 SMFDEK  254 (255)
Q Consensus       249 ~ll~~~  254 (255)
                      +.+.+.
T Consensus       188 ~rl~e~  193 (249)
T COG1134         188 ERLNEL  193 (249)
T ss_pred             HHHHHH
Confidence            777654

>PLN03073 ABC transporter F family; Provisional

Probab=99.94  E-value=1.6e-27  Score=230.93  Aligned_cols=163  Identities=15%  Similarity=0.118  Sum_probs=121.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      .++|+++||++.|++. +.  +|+|+||+|.+|+++||+||||||||||||+|+|+++   |++|++ ++.   ...+|+
T Consensus       506 ~~~L~~~~ls~~y~~~-~~--il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy  576 (718)
T PLN03073        506 PPIISFSDASFGYPGG-PL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV  576 (718)
T ss_pred             CceEEEEeeEEEeCCC-Ce--eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE
Confidence            3689999999999642 22  4599999999999999999999999999999999998   999983 332   123454


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEE
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                       +.+....    .++...+....... ..+ ......+..+++.+++.   .+.++..||||||||+++|++++.+|++|
T Consensus       577 -v~Q~~~~----~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lL  649 (718)
T PLN03073        577 -FSQHHVD----GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHIL  649 (718)
T ss_pred             -Eeccccc----cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEE
Confidence             4332211    12222222111111 111 12235567888988885   35678999999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||++||+.++..+.+.+.+
T Consensus       650 LLDEPT~~LD~~s~~~l~~~L~~  672 (718)
T PLN03073        650 LLDEPSNHLDLDAVEALIQGLVL  672 (718)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999888754

>PLN03211 ABC transporter G-25; Provisional

Probab=99.94  E-value=1.3e-27  Score=230.26  Aligned_cols=165  Identities=15%  Similarity=0.112  Sum_probs=123.4

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC--CCc-cCCCCCC----CCCe
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQVK----PPDV  151 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~--~G~-~~~~~~~----~~~~  151 (255)
                      .++|+++.|++  +.  +|+|+|+++++||++||+|||||||||||++|+|.++   |+  +|+ .+++...    ....
T Consensus        70 ~~~~l~~~~~~--~~--iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i  142 (659)
T PLN03211         70 KISDETRQIQE--RT--ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT  142 (659)
T ss_pred             ccccccccCCC--Ce--eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence            45788999987  44  5599999999999999999999999999999999986   64  788 4555321    1234


Q ss_pred             EEEEecCCCCCCCccCCcccChHHHHHhcCCCCC----ccHHHHHHHHHhhcccC-------CccCCCCCcccccchhhh
Q 025293          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~l~~~~-------~~~~~~lS~G~kqrv~la  220 (255)
                      |+ +.++.....  .+++.+++.+..... .+..    .....+.++++.+++..       +..+..||||||||+++|
T Consensus       143 ~y-v~Q~~~l~~--~lTV~E~l~~~a~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia  218 (659)
T PLN03211        143 GF-VTQDDILYP--HLTVRETLVFCSLLR-LPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA  218 (659)
T ss_pred             EE-ECcccccCC--cCCHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence            55 444433222  257777776543322 2211    11233567888888753       234678999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|+|||+||||++||..++..+.+++.+.
T Consensus       219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l  252 (659)
T PLN03211        219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGSL  252 (659)
T ss_pred             HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=2.1e-27  Score=227.24  Aligned_cols=160  Identities=14%  Similarity=0.136  Sum_probs=120.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++|+++.|++. ++  +|+|+||+|++||++||+|+||||||||+++|+|+.+   |++|+ .+++...        
T Consensus       340 ~i~~~~v~f~y~~~-~~--il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  413 (592)
T PRK10790        340 RIDIDNVSFAYRDD-NL--VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL  413 (592)
T ss_pred             eEEEEEEEEEeCCC-Cc--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence            48999999999752 33  4599999999999999999999999999999999998   99998 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k  214 (255)
                      ...+++ +.++.+.+..   +..+|+..       ..+....++.++++.+++.         .+.    ....|||||+
T Consensus       414 ~~~i~~-v~Q~~~lF~~---Ti~~NI~~-------~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr  482 (592)
T PRK10790        414 RQGVAM-VQQDPVVLAD---TFLANVTL-------GRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK  482 (592)
T ss_pred             HhheEE-EccCCccccc---hHHHHHHh-------CCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence            123454 5555543321   33333322       2223344555565555432         222    3457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+|+|+||||++||+.+.+.+.+.+.+
T Consensus       483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~  521 (592)
T PRK10790        483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAA  521 (592)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.94  E-value=2.3e-27  Score=230.80  Aligned_cols=162  Identities=15%  Similarity=0.114  Sum_probs=118.8

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +|+|+||+|++||+++|+|+||||||||+++|+|+.+   |++|+ .+++...        
T Consensus       463 ~I~~~~vsf~Y~~~~~~--vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~l  537 (694)
T TIGR03375       463 EIEFRNVSFAYPGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPADL  537 (694)
T ss_pred             eEEEEEEEEEeCCCCcc--ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHHH
Confidence            58999999999753234  4599999999999999999999999999999999998   99998 4554221        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k  214 (255)
                      +..+++ +.++.+.+.   -+..+|+..     + .++...+++.++++..++.         .+    .....||||||
T Consensus       538 r~~i~~-v~Q~~~lf~---~TI~eNi~~-----~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQr  607 (694)
T TIGR03375       538 RRNIGY-VPQDPRLFY---GTLRDNIAL-----G-APYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQR  607 (694)
T ss_pred             HhccEE-ECCChhhhh---hhHHHHHhC-----C-CCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHH
Confidence            123454 555544322   133333221     1 1123444555555544432         22    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||++..+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       608 QRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~  646 (694)
T TIGR03375       608 QAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR  646 (694)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.94  E-value=1.2e-27  Score=195.30  Aligned_cols=112  Identities=16%  Similarity=0.154  Sum_probs=91.1

Q ss_pred             cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCC
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF  160 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~  160 (255)
                      .||+|.|++  +.  ++++ +|+|++||+++|+||||||||||+|+|+|+++   |++|+              +.+++.
T Consensus         4 ~~l~~~~~~--~~--~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~--------------i~~~g~   61 (177)
T cd03222           4 PDCVKRYGV--FF--LLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDN--------------DEWDGI   61 (177)
T ss_pred             CCeEEEECC--EE--EEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcE--------------EEECCE
Confidence            589999987  33  4477 49999999999999999999999999999996   77763              333332


Q ss_pred             CCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293          161 HLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L  239 (255)
                      .+                  ++ ++...                     ||+||+||+++|++++.+|+++|+||||++|
T Consensus        62 ~i------------------~~~~q~~~---------------------LSgGq~qrv~laral~~~p~lllLDEPts~L  102 (177)
T cd03222          62 TP------------------VYKPQYID---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL  102 (177)
T ss_pred             EE------------------EEEcccCC---------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence            10                  00 11000                     9999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 025293          240 DGGVWKDVSSMFDE  253 (255)
Q Consensus       240 D~~~~~~l~~ll~~  253 (255)
                      |+.++..+.+++.+
T Consensus       103 D~~~~~~l~~~l~~  116 (177)
T cd03222         103 DIEQRLNAARAIRR  116 (177)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998865

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.9e-27  Score=214.35  Aligned_cols=162  Identities=15%  Similarity=0.097  Sum_probs=118.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CC---
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP---  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~---  149 (255)
                      .++++||+++|++.+.+  +|+|+||++++||.++|+|++|||||||+++|+|...   |++|+ .+++...   ++   
T Consensus       336 ~l~~~~vsF~y~~~~~~--~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~  410 (573)
T COG4987         336 ALELRNVSFTYPGQQTK--ALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL  410 (573)
T ss_pred             eeeeccceeecCCCccc--hhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence            79999999999985434  5599999999999999999999999999999999997   88887 3333211   00   


Q ss_pred             --CeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~  213 (255)
                        .... +.+... ++.         .-.+.+.-. .++...+.+.++++.+++.             .......|||||
T Consensus       411 ~e~i~v-l~Qr~h-lF~---------~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE  479 (573)
T COG4987         411 RETISV-LTQRVH-LFS---------GTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGE  479 (573)
T ss_pred             HHHHhh-hccchH-HHH---------HHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchH
Confidence              0000 111110 000         012222222 2344566777788877764             122345799999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+++||++..+++++||||||.|||+.+..++.+++.+.
T Consensus       480 ~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~  520 (573)
T COG4987         480 RRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEH  520 (573)
T ss_pred             HHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998764

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=2.1e-27  Score=226.46  Aligned_cols=163  Identities=14%  Similarity=0.124  Sum_probs=120.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ..|+++||++.|++..++  +|+|+||+|++|++++|+||||||||||+++|+|+.+   |++|+ .+++...       
T Consensus       337 ~~i~~~~v~f~y~~~~~~--il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~  411 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA  411 (574)
T ss_pred             CeEEEEEEEEECCCCCCc--ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence            359999999999753233  4599999999999999999999999999999999998   99998 5554321       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--------Cc----cCCCCCcccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG  214 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--------~~----~~~~lS~G~k  214 (255)
                       +..++. +.++.+.+.   -+..+|+.+     + .++...+.+..+++.+++..        +.    ....||||||
T Consensus       412 ~r~~i~~-v~Q~~~lf~---~ti~~Ni~~-----~-~~~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr  481 (574)
T PRK11160        412 LRQAISV-VSQRVHLFS---ATLRDNLLL-----A-APNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ  481 (574)
T ss_pred             HHhheeE-Ecccchhhc---ccHHHHhhc-----C-CCccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence             122444 555443322   133232221     1 12234455666666665531        11    3457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|++||+||||++||+.+.+.+.+.+.+
T Consensus       482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~  520 (574)
T PRK11160        482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE  520 (574)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=4.5e-27  Score=214.17  Aligned_cols=160  Identities=16%  Similarity=0.172  Sum_probs=122.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|+++ ++++  +++||+|++||.+||+|+|||||||++|+|.++.    .++|+ .+++...        
T Consensus       351 ~I~F~dV~f~y~~k-~~iL--~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl  423 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPK-RKVL--KGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL  423 (591)
T ss_pred             cEEEEeeEEEeCCC-Ccee--cceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence            59999999999973 2355  9999999999999999999999999999999999    78998 5665321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~k  214 (255)
                      +..+|. ++++...+.+   ++..|+     .+|.+ ....+++.++.++.++.             .-.....||||||
T Consensus       424 R~~Ig~-VPQd~~LFnd---TIl~NI-----~YGn~-sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek  493 (591)
T KOG0057|consen  424 RQSIGV-VPQDSVLFND---TILYNI-----KYGNP-SASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK  493 (591)
T ss_pred             hhheeE-eCCcccccch---hHHHHh-----hcCCC-CcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence            334565 6766654332   322222     23322 23345566666666553             1133557999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++||+++.+|+|+++||||+.||..+...+.+.+..
T Consensus       494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~  532 (591)
T KOG0057|consen  494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMD  532 (591)
T ss_pred             HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHH
Confidence            999999999999999999999999999999999988764

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.94  E-value=3.9e-27  Score=225.23  Aligned_cols=160  Identities=14%  Similarity=0.085  Sum_probs=117.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||++.|.+. ++  +|+|+||+|++|+++||+|+||||||||+++|+|++    |++|+ .+++...        
T Consensus       349 ~i~~~~vsf~~~~~-~~--vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l  421 (588)
T PRK11174        349 TIEAEDLEILSPDG-KT--LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW  421 (588)
T ss_pred             eEEEEeeEEeccCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence            48999999755432 34  459999999999999999999999999999999998    88998 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCCc----cCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~lS~G~k  214 (255)
                      +..+++ +.++.+.+.   -+..+|+.+.      .++...+++.++++..++         +.+.    ....||||||
T Consensus       422 r~~i~~-v~Q~~~LF~---~TI~eNI~~g------~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr  491 (588)
T PRK11174        422 RKHLSW-VGQNPQLPH---GTLRDNVLLG------NPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA  491 (588)
T ss_pred             HhheEE-ecCCCcCCC---cCHHHHhhcC------CCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence            123555 666655433   2443433221      123344555555554332         2232    2357999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|+||||||||++||..+.+.+.+.+.+
T Consensus       492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~  530 (588)
T PRK11174        492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA  530 (588)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988764

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.94  E-value=3.6e-27  Score=224.70  Aligned_cols=161  Identities=17%  Similarity=0.105  Sum_probs=119.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||+++|++..++  +++|+||+|++|++++|+|+||||||||+++|+|+.+   |++|+ .+++...        
T Consensus       330 ~i~~~~v~f~y~~~~~~--il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~  404 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRP--ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL  404 (571)
T ss_pred             eEEEEEEEEEcCCCCCc--cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence            58999999999653233  4599999999999999999999999999999999998   99998 4554221        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC--CCccHHHHHHHHHhhccc---------CCcc----CCCCCcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHG  212 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G  212 (255)
                      ...+++ +.++.+.+.   -+..+       +..+.  .+....++.++++.+++.         .+..    ...||||
T Consensus       405 ~~~i~~-v~Q~~~lf~---~Ti~~-------Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgG  473 (571)
T TIGR02203       405 RRQVAL-VSQDVVLFN---DTIAN-------NIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG  473 (571)
T ss_pred             HhhceE-EccCccccc---ccHHH-------HHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHH
Confidence            122444 555544332   13222       22222  234455555666555432         2222    3469999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||+++||+++.+|+++||||||++||+.+.+.+.+.+..
T Consensus       474 qrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988865

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.94  E-value=5e-27  Score=222.65  Aligned_cols=162  Identities=16%  Similarity=0.133  Sum_probs=115.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++|+++.|++..++  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       316 ~i~~~~v~~~y~~~~~~--~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~  390 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKP--TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF  390 (544)
T ss_pred             eEEEEEEEEEcCCCCcc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence            59999999999653233  4599999999999999999999999999999999998   99998 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHH---------HHhhcccC----CccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNLRNQG----SVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---------l~~l~~~~----~~~~~~lS~G~k  214 (255)
                      ....++ +.++.+.+.   -+..+|...      ..++...+.+.++         ++.+..+.    ......||||||
T Consensus       391 ~~~i~~-v~q~~~lf~---~ti~~Ni~~------~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~  460 (544)
T TIGR01842       391 GKHIGY-LPQDVELFP---GTVAENIAR------FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR  460 (544)
T ss_pred             hhheEE-ecCCccccc---ccHHHHHhc------cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence            123444 444433221   133232221      1112223333333         33332221    234568999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||++..+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~  499 (544)
T TIGR01842       461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKA  499 (544)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988864

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.94  E-value=4.2e-27  Score=199.18  Aligned_cols=148  Identities=17%  Similarity=0.198  Sum_probs=104.5

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~  177 (255)
                      |+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...   ....++ +............++.++..+..
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~   76 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGY-VPQRHEFAWDFPISVAHTVMSGR   76 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEE-ecccccccCCCCccHHHHHHhcc
Confidence            5788999999999999999999999999998   99999 5555321   123454 33332111111123333332211


Q ss_pred             Hh-cCC---CCCccHHHHHHHHHhhcccC--CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293          178 AR-RGA---PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       178 ~~-~~~---~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      .. .+.   ........+..+++.+++..  +.++..||+||+||+++|++++.+|+++|+||||++||+.+++.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            00 011   11112234567788887753  5677899999999999999999999999999999999999999999998


Q ss_pred             Hh
Q 025293          252 DE  253 (255)
Q Consensus       252 ~~  253 (255)
                      .+
T Consensus       157 ~~  158 (223)
T TIGR03771       157 IE  158 (223)
T ss_pred             HH
Confidence            75

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.94  E-value=3.3e-27  Score=188.92  Aligned_cols=177  Identities=15%  Similarity=0.125  Sum_probs=124.9

Q ss_pred             CCeEEecCchheehhhh-----cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-
Q 025293           75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~-----~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-  147 (255)
                      |+.++++|++|.|....     +.+.+++.|||++++|+.+||+|.||||||||.|+|+|.++   |++|+ .+++... 
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~   78 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH   78 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence            56789999999985421     23457799999999999999999999999999999999999   99999 5555432 


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccch
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv  217 (255)
                            +...-..+++|.....++.+.+..-+....+. -.+........+.+-+..+++.   .+.++..||-||||||
T Consensus        79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV  158 (267)
T COG4167          79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV  158 (267)
T ss_pred             ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence                  11111224443322222212221111111111 1111122234456667777775   4578889999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||||+.+|+|+|.||...+||...+.++.+++.+.
T Consensus       159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeL  195 (267)
T COG4167         159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLEL  195 (267)
T ss_pred             HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988654

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.94  E-value=4.4e-27  Score=207.60  Aligned_cols=176  Identities=18%  Similarity=0.231  Sum_probs=136.5

Q ss_pred             CCeEEecCchheehhh-------hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC
Q 025293           75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~-------~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~  146 (255)
                      .+++++++|...|.-.       ...+.+++++||++++|+.+||+|.||||||||-+.|.+++    +..|+ .|.+..
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~  349 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD  349 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence            4689999999988532       12355789999999999999999999999999999999999    66798 566543


Q ss_pred             CC--------C--CeEEEEecCCCCCCCccCCcccChHHHHHhcCC--CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293          147 KP--------P--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       147 ~~--------~--~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~  211 (255)
                      ..        |  ..-.++++|.|--..+.+++.+-+.+.......  ........+.++++.+++.   .++|+++|||
T Consensus       350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG  429 (534)
T COG4172         350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG  429 (534)
T ss_pred             ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence            21        1  122346677665555555655544444443331  2333455678889999987   4689999999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||++||||++.+|++++|||||+.||-..+.++.+++...
T Consensus       430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~L  472 (534)
T COG4172         430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL  472 (534)
T ss_pred             chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999754

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.94  E-value=3.6e-27  Score=229.91  Aligned_cols=162  Identities=15%  Similarity=0.080  Sum_probs=118.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++. ++  +|+|+||+|++|+.+||+|+||||||||+++|+|+.+   |++|+ .+++...        
T Consensus       473 ~I~~~~vsf~y~~~-~~--iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  546 (708)
T TIGR01193       473 DIVINDVSYSYGYG-SN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL  546 (708)
T ss_pred             cEEEEEEEEEcCCC-Cc--ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence            58999999999742 34  4599999999999999999999999999999999998   99999 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lS~G~k  214 (255)
                      +..+|+ +.++.+.+.   -+..+|+..     +...+...+++.++++..++         +.+    .....||||||
T Consensus       547 r~~i~~-v~Q~~~lf~---gTI~eNi~l-----~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr  617 (708)
T TIGR01193       547 RQFINY-LPQEPYIFS---GSILENLLL-----GAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK  617 (708)
T ss_pred             HHheEE-EecCceehh---HHHHHHHhc-----cCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence            223565 565554332   133333322     11122333444444444332         222    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|++||+||||++||+.+.+.+.+.+..
T Consensus       618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~  656 (708)
T TIGR01193       618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN  656 (708)
T ss_pred             HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888864

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.94  E-value=1.5e-26  Score=202.08  Aligned_cols=152  Identities=11%  Similarity=0.100  Sum_probs=105.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      ...|+++|+++.  +  +.  +|+++||+|++|+++||+|+||||||||+++|+|+++   |++|+ .+++     .+++
T Consensus        37 ~~~l~i~nls~~--~--~~--vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y  102 (282)
T cd03291          37 DNNLFFSNLCLV--G--AP--VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF  102 (282)
T ss_pred             CCeEEEEEEEEe--c--cc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence            457999999985  2  23  5599999999999999999999999999999999998   89997 3332     2444


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------c----CCccCCCCCcccccchhhh
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lS~G~kqrv~la  220 (255)
                       +.+... ++.  .++.++..+     +..  .........++.+++         .    ....+..||+||+||+++|
T Consensus       103 -v~q~~~-l~~--~tv~enl~~-----~~~--~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA  171 (282)
T cd03291         103 -SSQFSW-IMP--GTIKENIIF-----GVS--YDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA  171 (282)
T ss_pred             -EeCccc-ccc--cCHHHHhhc-----ccc--cCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence             333322 111  132222211     100  011111122222211         1    1223568999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      ++|+.+|++||+||||++||+..+..+.+.+
T Consensus       172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~l  202 (282)
T cd03291         172 RAVYKDADLYLLDSPFGYLDVFTEKEIFESC  202 (282)
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHHH
Confidence            9999999999999999999999999888753

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.94  E-value=6.5e-27  Score=223.78  Aligned_cols=161  Identities=18%  Similarity=0.155  Sum_probs=118.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++. ++  +|+|+||++++|++++|+|+||||||||+|+|+|+.+   |++|+ .+++...        
T Consensus       334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~  407 (588)
T PRK13657        334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL  407 (588)
T ss_pred             eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence            58999999999752 33  4599999999999999999999999999999999998   99998 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k  214 (255)
                      ...+++ +.++.+.+.   -+..+|+.+     + .++...+++..+++.+++.         .+    .....|||||+
T Consensus       408 r~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~-~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~  477 (588)
T PRK13657        408 RRNIAV-VFQDAGLFN---RSIEDNIRV-----G-RPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER  477 (588)
T ss_pred             HhheEE-EecCccccc---ccHHHHHhc-----C-CCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence            123555 555544332   133333321     1 1122334444454444321         22    22356999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus       478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~  516 (588)
T PRK13657        478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALDE  516 (588)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.94  E-value=6.3e-27  Score=228.08  Aligned_cols=158  Identities=17%  Similarity=0.140  Sum_probs=115.8

Q ss_pred             eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .|+++||++.|++.. ++  +|+|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .+++...       
T Consensus       478 ~I~~~nVsf~Y~~~~~~~--vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~  552 (711)
T TIGR00958       478 LIEFQDVSFSYPNRPDVP--VLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY  552 (711)
T ss_pred             eEEEEEEEEECCCCCCCc--cccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            599999999997521 23  5599999999999999999999999999999999998   99998 4555321       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~  213 (255)
                       ...++. +.++.+.+.   -+..+|+.+     +. ++...+++.++++..++.         .+.    ....|||||
T Consensus       553 lr~~i~~-v~Q~~~lF~---gTIreNI~~-----g~-~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ  622 (711)
T TIGR00958       553 LHRQVAL-VGQEPVLFS---GSVRENIAY-----GL-TDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ  622 (711)
T ss_pred             HHhhceE-EecCccccc---cCHHHHHhc-----CC-CCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence             123454 555554332   233333321     11 122344555555554432         222    235799999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      |||+++||++..+|+|+|+||||++||+.+.+.+.+
T Consensus       623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~  658 (711)
T TIGR00958       623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE  658 (711)
T ss_pred             HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence            999999999999999999999999999999888877

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.94  E-value=4.8e-27  Score=226.85  Aligned_cols=165  Identities=12%  Similarity=0.018  Sum_probs=118.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (255)
                      .+|+++||++.|++. +.  +++|+||+|++||+++|+||||||||||+++|+|+.+   |++|++ ++.   ....+. 
T Consensus       450 ~~i~~~nv~~~~~~~-~~--il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~-  519 (659)
T TIGR00954       450 NGIKFENIPLVTPNG-DV--LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY-  519 (659)
T ss_pred             CeEEEEeeEEECCCC-Ce--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE-
Confidence            469999999999642 23  5599999999999999999999999999999999997   888873 321   223454 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccC--Cc---------cCCCCCcccccchhhhhh
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG--SV---------YAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~--~~---------~~~~lS~G~kqrv~la~~  222 (255)
                      +.++.+...   .++.+++.+.....+. ........+.++++.+++..  +.         ....||||||||+++||+
T Consensus       520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa  596 (659)
T TIGR00954       520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL  596 (659)
T ss_pred             ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence            444433221   1333333221110011 11123345567777766542  11         236899999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++.+|+++||||||++||+...+.+.+.+.+
T Consensus       597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~  627 (659)
T TIGR00954       597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE  627 (659)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998865

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.94  E-value=1.1e-26  Score=222.08  Aligned_cols=161  Identities=17%  Similarity=0.129  Sum_probs=115.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .++++||++.|++. +.  +++|+||+|++|++++|+||||||||||+++|+|+.+   |++|+ .+++...        
T Consensus       334 ~i~~~~v~~~y~~~-~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  407 (585)
T TIGR01192       334 AVEFRHITFEFANS-SQ--GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRESL  407 (585)
T ss_pred             eEEEEEEEEECCCC-Cc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHHH
Confidence            58999999999752 23  4599999999999999999999999999999999998   99998 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------c----CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lS~G~k  214 (255)
                      ....+. +.++.+.+.   .+..+++.+     +.+ +....++...++..++         +    .......||||||
T Consensus       408 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~  477 (585)
T TIGR01192       408 RKSIAT-VFQDAGLFN---RSIRENIRL-----GRE-GATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGER  477 (585)
T ss_pred             HhheEE-EccCCccCc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHH
Confidence            123444 454443222   233333221     111 1222333333322211         1    1234567999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+|+.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       478 qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~  516 (585)
T TIGR01192       478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA  516 (585)
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.94  E-value=6e-27  Score=222.24  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=113.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++. ++  +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       322 ~i~~~~v~f~y~~~-~~--~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  395 (547)
T PRK10522        322 TLELRNVTFAYQDN-GF--SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY  395 (547)
T ss_pred             eEEEEEEEEEeCCC-Ce--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence            68999999999742 23  4599999999999999999999999999999999998   99998 4444321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCc-------cCCCCCcccccchhhh
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------YAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~lS~G~kqrv~la  220 (255)
                      ...+++ +.++.+.+..   +..++          ..........++++.+++....       ....|||||+||+++|
T Consensus       396 ~~~i~~-v~q~~~lf~~---ti~~n----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA  461 (547)
T PRK10522        396 RKLFSA-VFTDFHLFDQ---LLGPE----------GKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL  461 (547)
T ss_pred             hhheEE-EecChhHHHH---hhccc----------cCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence            112333 3333322110   11111          1122233455667666654321       1357999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      |+++.+|++||+||||++||+.+.+.+.+.+.
T Consensus       462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~  493 (547)
T PRK10522        462 LALAEERDILLLDEWAADQDPHFRREFYQVLL  493 (547)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999998887764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.94  E-value=9.4e-27  Score=200.70  Aligned_cols=158  Identities=15%  Similarity=0.078  Sum_probs=109.4

Q ss_pred             cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------------CCCCCCC
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP  148 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------------~~~~~~~  148 (255)
                      .+|+++|++.  . .+++|+|+ +.+|++++|+|||||||||||++|+|+++   |++|++            +++....
T Consensus         4 ~~~~~~y~~~--~-~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~   76 (255)
T cd03236           4 DEPVHRYGPN--S-FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ   76 (255)
T ss_pred             cCcceeecCc--c-hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence            4789999752  1 25699995 99999999999999999999999999998   999984            2221110


Q ss_pred             C----------CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC--CccCCCCCcccccc
Q 025293          149 P----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP  216 (255)
Q Consensus       149 ~----------~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqr  216 (255)
                      .          ..+. + ..+..+..  ....++...   .  +..........++++.+++..  +..+..||+||+||
T Consensus        77 ~~~~~~~~~~~~i~~-~-~~~~~~~~--~~~~~~i~~---~--l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  147 (255)
T cd03236          77 NYFTKLLEGDVKVIV-K-PQYVDLIP--KAVKGKVGE---L--LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR  147 (255)
T ss_pred             hhhHHhhhcccceee-e-cchhccCc--hHHHHHHHH---H--hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence            0          0011 0 01111100  011111111   1  111112234567788887753  56778999999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|++++.+|+++|+||||++||+..+..+.+++.+.
T Consensus       148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l  185 (255)
T cd03236         148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIREL  185 (255)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=1.1e-26  Score=221.24  Aligned_cols=162  Identities=13%  Similarity=0.155  Sum_probs=116.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++|+++.|++..+.  +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       313 ~I~~~~v~~~y~~~~~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~  387 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHP--ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW  387 (569)
T ss_pred             cEEEEEEEEECCCCCCc--cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence            58999999999753233  4599999999999999999999999999999999998   99998 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k  214 (255)
                      ...++. +.++.+.+.   -+..+|+..     +. ++.....+..+++..++.         .+    .....|||||+
T Consensus       388 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~-~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~  457 (569)
T PRK10789        388 RSRLAV-VSQTPFLFS---DTVANNIAL-----GR-PDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK  457 (569)
T ss_pred             HhheEE-EccCCeecc---ccHHHHHhc-----CC-CCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            122444 444433221   133332211     11 223334444444443321         11    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+..
T Consensus       458 qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~  496 (569)
T PRK10789        458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ  496 (569)
T ss_pred             HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.94  E-value=1.4e-26  Score=220.92  Aligned_cols=162  Identities=20%  Similarity=0.187  Sum_probs=117.5

Q ss_pred             eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .|+++||++.|++.. +.  +|+|+||+|++||+++|+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus       337 ~i~~~~v~f~y~~~~~~~--iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~  411 (576)
T TIGR02204       337 EIEFEQVNFAYPARPDQP--ALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE  411 (576)
T ss_pred             eEEEEEEEEECCCCCCCc--cccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            589999999997421 23  4599999999999999999999999999999999998   99998 4554211       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~  213 (255)
                       ....++ +.++.+.+.   -+..+|+.+     +. ++...+++.++++.+++.         .+    .....|||||
T Consensus       412 ~~~~i~~-~~Q~~~lf~---~Ti~~Ni~~-----~~-~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq  481 (576)
T TIGR02204       412 LRARMAL-VPQDPVLFA---ASVMENIRY-----GR-PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ  481 (576)
T ss_pred             HHHhceE-EccCCcccc---ccHHHHHhc-----CC-CCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence             123454 555444332   133333211     11 122344555555554432         12    2345799999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +||+++||++..+|+++|+||||++||+.+.+.+.+.+..
T Consensus       482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~  521 (576)
T TIGR02204       482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALET  521 (576)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999887764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.94  E-value=1.2e-26  Score=225.79  Aligned_cols=162  Identities=14%  Similarity=0.086  Sum_probs=117.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++..+.  +++|+||+|++|++++|+|+||||||||+|+|+|+.+   |++|+ .+++...        
T Consensus       455 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~~  529 (694)
T TIGR01846       455 AITFENIRFRYAPDSPE--VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAWL  529 (694)
T ss_pred             eEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHHH
Confidence            58999999999653233  4599999999999999999999999999999999998   99998 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lS~G~k  214 (255)
                      +..+++ +.++.+.+.   -+..+|+..     + .++.....+.++++..++         +.+    .....||||||
T Consensus       530 r~~i~~-v~q~~~lf~---~ti~eNi~~-----~-~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~  599 (694)
T TIGR01846       530 RRQMGV-VLQENVLFS---RSIRDNIAL-----C-NPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQR  599 (694)
T ss_pred             HHhCeE-EccCCeehh---hhHHHHHhc-----C-CCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHH
Confidence            123454 454443322   133232211     1 112333444444444332         222    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+.+.+.+.+.+
T Consensus       600 qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~  638 (694)
T TIGR01846       600 QRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE  638 (694)
T ss_pred             HHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.93  E-value=2.6e-26  Score=202.73  Aligned_cols=175  Identities=15%  Similarity=0.195  Sum_probs=129.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC------Cc-cCCCCCC
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK------AS-SFDSQVK  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~------G~-~~~~~~~  147 (255)
                      +++|+++||+..|+.....+.++++|||+|++||.+||+|+||||||-..+.|.+++    |..      |+ .|++...
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL----p~~~~~~~sg~i~f~G~dl   79 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL----PSPAAAHPSGSILFDGEDL   79 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc----CCCcccCccceeEEcChhh
Confidence            578999999999975434455779999999999999999999999999999999999    653      33 3333211


Q ss_pred             ------------CCCeEEEEecCCCCCCCccCCcccChHH-HHHhcCCCCCccHHHHHHHHHhhccc-----CCccCCCC
Q 025293          148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSF  209 (255)
Q Consensus       148 ------------~~~~g~~i~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~~~-----~~~~~~~l  209 (255)
                                  ..+++. |++....--++-.+....+.+ +....++.......+..++++.+++.     .+.|+++|
T Consensus        80 l~~se~~lr~iRG~~I~M-IFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeL  158 (534)
T COG4172          80 LAASERQLRGVRGNKIGM-IFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHEL  158 (534)
T ss_pred             hcCCHHHHhhhcccceEE-EecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCccc
Confidence                        123444 443332211111122222222 22334555445566778999999987     46789999


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||+|||+||+||+.+|++||.||||..||...+.++.+++.+.
T Consensus       159 SGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~L  203 (534)
T COG4172         159 SGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKEL  203 (534)
T ss_pred             CcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999764

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=3.6e-26  Score=210.51  Aligned_cols=161  Identities=12%  Similarity=0.082  Sum_probs=118.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      .++++||++.|++.+ +  +++|+||++++|+.++|+|+||||||||+++|+|+++   |+.|+ .+++....       
T Consensus       320 ei~~~~l~~~y~~g~-~--~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~  393 (559)
T COG4988         320 EISLENLSFRYPDGK-P--ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAW  393 (559)
T ss_pred             eeeecceEEecCCCC-c--ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHH
Confidence            455679999998852 3  5599999999999999999999999999999999998   89998 45543221       


Q ss_pred             -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc--------CCccC----CCCCcccc
Q 025293          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--------GSVYA----PSFDHGVG  214 (255)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~--------~~~~~----~~lS~G~k  214 (255)
                       .+... +.+..+-+..   +..+       +..+ ..+...+.+..+++..++.        .+..+    ..|||||+
T Consensus       394 ~k~i~~-v~Q~p~lf~g---Tire-------Ni~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~  462 (559)
T COG4988         394 RKQISW-VSQNPYLFAG---TIRE-------NILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQA  462 (559)
T ss_pred             HhHeee-eCCCCccccc---cHHH-------HhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHH
Confidence             12333 4444443221   3323       3222 1223445566666665543        23333    35999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||++||++..+++++|+||||++||.++.+.+.+.+.+.
T Consensus       463 QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l  502 (559)
T COG4988         463 QRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQEL  502 (559)
T ss_pred             HHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888653

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=5.2e-27  Score=189.37  Aligned_cols=169  Identities=16%  Similarity=0.211  Sum_probs=126.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC--CC----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--KP----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~--~~----  148 (255)
                      .+++++||+++|++..    +++++||+|.+||.-+|||||||||||+|.+|+|..+   |+.|+ ++++..  ..    
T Consensus         4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~   76 (249)
T COG4674           4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH   76 (249)
T ss_pred             ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence            5799999999999954    7799999999999999999999999999999999998   99999 565522  11    


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhc-CC-------CCCccHHHHHHHHHhhcccC--CccCCCCCcccc
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GA-------PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG  214 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~k  214 (255)
                          .-+|.-++.+..  + ..+++.+|++...... ++       .......++.+++..+++..  +.....||+|||
T Consensus        77 ~IAr~GIGRKFQ~PtV--f-e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK  153 (249)
T COG4674          77 RIARAGIGRKFQKPTV--F-ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK  153 (249)
T ss_pred             HHHHhccCccccCCee--h-hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence                112221111111  1 2356777666543221 11       11122335667788777764  445668999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++.|++.++.+|++|++|||++|+-.....+..+++...
T Consensus       154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~l  193 (249)
T COG4674         154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSL  193 (249)
T ss_pred             hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=9.3e-27  Score=180.83  Aligned_cols=168  Identities=14%  Similarity=0.056  Sum_probs=127.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      ++.++||+...++..    .|.|+||+|.+|||+.|+||+|||||||+..+.|.+...|..+|+ .++++..      ..
T Consensus         2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR   77 (213)
T COG4136           2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR   77 (213)
T ss_pred             ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence            578899998888754    569999999999999999999999999999999999866666788 4444321      34


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      .+|. +.++...++.  +++.+++.+.... .+............++..++.  ....+.++|||||.||++.|+|...|
T Consensus        78 q~Gi-LFQD~lLFph--lsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P  153 (213)
T COG4136          78 QIGI-LFQDALLFPH--LSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP  153 (213)
T ss_pred             heee-eecccccccc--cccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence            4665 5666654433  6666665442211 011111223345677777776  35667899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      +.+++||||+.||..-+.++++++-
T Consensus       154 k~lLLDEPFS~LD~ALR~qfR~wVF  178 (213)
T COG4136         154 KALLLDEPFSRLDVALRDQFRQWVF  178 (213)
T ss_pred             ceeeeCCchhHHHHHHHHHHHHHHH
Confidence            9999999999999999999998764

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.93  E-value=1.2e-26  Score=196.33  Aligned_cols=154  Identities=12%  Similarity=0.128  Sum_probs=122.7

Q ss_pred             CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------------CC
Q 025293           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------------KP  148 (255)
Q Consensus        82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------------~~  148 (255)
                      |+.+.+|+..      -+++|..+...+++|.|+||||||||+|+|+|+.+   |++|. .+++.+            .+
T Consensus         5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~   75 (352)
T COG4148           5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK   75 (352)
T ss_pred             ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence            5677777632      47899998878999999999999999999999999   99998 344421            13


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ..+|+ ++++...++.  +++..|+.+.....      ....+..+.+.+++.  .++++..|||||||||+|+|||...
T Consensus        76 RriGY-VFQDARLFpH--~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~  146 (352)
T COG4148          76 RRIGY-VFQDARLFPH--YTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA  146 (352)
T ss_pred             heeee-Eeeccccccc--eEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence            45787 6666654443  67777776655432      233455677777776  5788999999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|+||||++.||.+-+.+++..++.
T Consensus       147 P~LLLmDEPLaSLD~~RK~EilpylER  173 (352)
T COG4148         147 PELLLMDEPLASLDLPRKREILPYLER  173 (352)
T ss_pred             CCeeeecCchhhcccchhhHHHHHHHH
Confidence            999999999999999999999988865

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.93  E-value=1.7e-26  Score=219.39  Aligned_cols=159  Identities=14%  Similarity=-0.002  Sum_probs=112.8

Q ss_pred             eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .|+++||++.|++.. ....+|+|+||++++|++++|+||||||||||+++|+|+.+   |++|+ .+++....      
T Consensus       337 ~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~~  413 (555)
T TIGR01194       337 SIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRDD  413 (555)
T ss_pred             eEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            589999999997521 01124599999999999999999999999999999999998   99998 44442211      


Q ss_pred             --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC--------ccCCCCCcccccchh
Q 025293          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS--------VYAPSFDHGVGDPVE  218 (255)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~--------~~~~~lS~G~kqrv~  218 (255)
                        ...+. +.++.+.+..   +..++         ..+......+.++++.+++...        .....||||||||++
T Consensus       414 ~~~~i~~-v~q~~~lf~~---ti~~n---------~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRla  480 (555)
T TIGR01194       414 YRDLFSA-IFADFHLFDD---LIGPD---------EGEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLA  480 (555)
T ss_pred             HHhhCcE-EccChhhhhh---hhhcc---------cccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHH
Confidence              11232 3333221110   11111         0112233455667777665421        123579999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      +||+++.+|+++|+||||++||+.+.+.+.+.+
T Consensus       481 laRall~~~~ililDE~ts~LD~~~~~~i~~~l  513 (555)
T TIGR01194       481 LICAWLEDRPILLFDEWAADQDPAFKRFFYEEL  513 (555)
T ss_pred             HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHH
Confidence            999999999999999999999999999987643

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.93  E-value=1.5e-26  Score=185.31  Aligned_cols=124  Identities=21%  Similarity=0.306  Sum_probs=96.0

Q ss_pred             ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCC
Q 025293           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG  159 (255)
Q Consensus        80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~  159 (255)
                      ++++++.|.+  +.  +++++||+|++|++++|+|+||||||||+++|+|+++   |++|             . +.+++
T Consensus         2 ~~~~~~~~~~--~~--~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~G-------------~-i~~~~   60 (157)
T cd00267           2 IENLSFRYGG--RT--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTSG-------------E-ILIDG   60 (157)
T ss_pred             eEEEEEEeCC--ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcc-------------E-EEECC
Confidence            5788999976  33  5599999999999999999999999999999999985   5444             4 45555


Q ss_pred             CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293          160 FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       160 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L  239 (255)
                      .....     .. ........++.                       ++||+||+||++++++++.+|+++|+||||++|
T Consensus        61 ~~~~~-----~~-~~~~~~~i~~~-----------------------~qlS~G~~~r~~l~~~l~~~~~i~ilDEp~~~l  111 (157)
T cd00267          61 KDIAK-----LP-LEELRRRIGYV-----------------------PQLSGGQRQRVALARALLLNPDLLLLDEPTSGL  111 (157)
T ss_pred             EEccc-----CC-HHHHHhceEEE-----------------------eeCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCC
Confidence            42211     00 00111112211                       119999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHh
Q 025293          240 DGGVWKDVSSMFDE  253 (255)
Q Consensus       240 D~~~~~~l~~ll~~  253 (255)
                      |..++..+.+++.+
T Consensus       112 D~~~~~~l~~~l~~  125 (157)
T cd00267         112 DPASRERLLELLRE  125 (157)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999998865

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.93  E-value=4e-26  Score=186.06  Aligned_cols=120  Identities=15%  Similarity=0.058  Sum_probs=91.1

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +|+|+||+|++|++++|+||||||||||||+|.       +++|+              +.+.+....      ..    
T Consensus        10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il-------~~~G~--------------v~~~~~~~~------~~----   58 (176)
T cd03238          10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL-------YASGK--------------ARLISFLPK------FS----   58 (176)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHh-------hcCCc--------------EEECCcccc------cc----
Confidence            569999999999999999999999999999884       33442              222222100      00    


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC--CcEEEEcCCCCCCChhHHHHHHHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~--~~illlDep~~~LD~~~~~~l~~l  250 (255)
                       .....+..+      .++++.+++.   .+.++..||+||+||+++|++++.+  |+++|+|||+++||+..++.+.++
T Consensus        59 -~~~~~~~~q------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~  131 (176)
T cd03238          59 -RNKLIFIDQ------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV  131 (176)
T ss_pred             -cccEEEEhH------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence             000111000      4567777764   4577889999999999999999999  999999999999999999999998


Q ss_pred             HHh
Q 025293          251 FDE  253 (255)
Q Consensus       251 l~~  253 (255)
                      +.+
T Consensus       132 l~~  134 (176)
T cd03238         132 IKG  134 (176)
T ss_pred             HHH
Confidence            875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03073 ABC transporter F family; Provisional

Probab=99.93  E-value=3.5e-26  Score=221.74  Aligned_cols=174  Identities=12%  Similarity=0.036  Sum_probs=110.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc--CCCCCCCCC--
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS--FDSQVKPPD--  150 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~--~~~~~~~~~--  150 (255)
                      +.+|+++|+++.|++  +.  +|+|+||+|.+|+++||+|+||||||||||+|+|......|++|++  +.+......  
T Consensus       175 ~~~I~i~nls~~y~~--~~--ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t  250 (718)
T PLN03073        175 IKDIHMENFSISVGG--RD--LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTT  250 (718)
T ss_pred             ceeEEEceEEEEeCC--CE--EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCC
Confidence            458999999999986  34  5599999999999999999999999999999999641012666641  111100000  


Q ss_pred             e-------------------EEEEecCC-----------CCCCCccCCcc---cChHHHHHhcCCCCC-ccHHHHHHHHH
Q 025293          151 V-------------------ATVLPMDG-----------FHLYLSQLDAM---EDPKEAHARRGAPWT-FNPLLLLNCLK  196 (255)
Q Consensus       151 ~-------------------g~~i~~~~-----------~~~~~~~l~~~---~~~~~~~~~~~~~~~-~~~~~~~~~l~  196 (255)
                      .                   +. +.+..           +.......+..   +........++.... .....+..++.
T Consensus       251 ~~~~v~~~~~~~~~~~~~~~~~-~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~  329 (718)
T PLN03073        251 ALQCVLNTDIERTQLLEEEAQL-VAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA  329 (718)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHH-HHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence            0                   00 00000           00000000000   000000000000000 11223455666


Q ss_pred             hhccc---CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          197 NLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       197 ~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+++.   .+.++..|||||+||++||++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       330 ~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~  389 (718)
T PLN03073        330 GLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK  389 (718)
T ss_pred             HCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            67764   3567889999999999999999999999999999999999999999998865

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.93  E-value=3.2e-26  Score=218.15  Aligned_cols=160  Identities=16%  Similarity=0.160  Sum_probs=116.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||++.|++. ++  +++|+||++++||++||+||||||||||+++|.++.+   |++|+ .+++...        
T Consensus       328 ~I~f~~vsf~y~~~-~~--vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~l  401 (567)
T COG1132         328 SIEFENVSFSYPGK-KP--VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDSL  401 (567)
T ss_pred             eEEEEEEEEEcCCC-Cc--cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHHH
Confidence            48999999999842 34  4599999999999999999999999999999999998   99999 4544221        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhcccCCcc----CCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~~~~~----~~~lS~G~k  214 (255)
                      +..++. +.++.+.+.   -++.+|+.+.     .+ +...+++.++++         ++-.+.+..    ...||||||
T Consensus       402 r~~I~~-V~Qd~~LF~---~TI~~NI~~g-----~~-~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQr  471 (567)
T COG1132         402 RKRIGI-VSQDPLLFS---GTIRENIALG-----RP-DATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQR  471 (567)
T ss_pred             HHhccE-Ecccceeec---ccHHHHHhcC-----CC-CCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHH
Confidence            234553 665554332   1333333221     11 122333333333         331122333    347999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      ||+++||++..+|++|||||||+.||..+...+.+.+.
T Consensus       472 QrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~  509 (567)
T COG1132         472 QRLAIARALLRNPPILILDEATSALDTETEALIQDALK  509 (567)
T ss_pred             HHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence            99999999999999999999999999999999998885

>PRK13409 putative ATPase RIL; Provisional

Probab=99.93  E-value=4.5e-26  Score=217.08  Aligned_cols=155  Identities=15%  Similarity=0.049  Sum_probs=110.0

Q ss_pred             CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------------CCCCCCC-
Q 025293           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP-  148 (255)
Q Consensus        82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------------~~~~~~~-  148 (255)
                      ++++.|+.+  . ++|++++ .+++|+++||+||||||||||+|+|+|+++   |++|++            +.+.... 
T Consensus        78 ~~~~~yg~~--~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~  150 (590)
T PRK13409         78 EPVHRYGVN--G-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN  150 (590)
T ss_pred             CceEEecCC--c-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence            378999862  1 2569999 899999999999999999999999999998   999984            3222100 


Q ss_pred             ---------CCeEEEEecCCCCCCCc--cCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCccccc
Q 025293          149 ---------PDVATVLPMDGFHLYLS--QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ---------~~~g~~i~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kq  215 (255)
                               ...+.  ...+..+...  ..++.+++       ..  ......+.++++.+++.  .++.+..|||||+|
T Consensus       151 ~~~~~~~~~~~~~~--~~q~~~~~p~~~~~tv~e~l-------~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~q  219 (590)
T PRK13409        151 YFKKLYNGEIKVVH--KPQYVDLIPKVFKGKVRELL-------KK--VDERGKLDEVVERLGLENILDRDISELSGGELQ  219 (590)
T ss_pred             HHHHHhccCcceee--cccchhhhhhhhcchHHHHH-------Hh--hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence                     00111  0111110000  00111111       00  01123456778888775  46788999999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus       220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l  258 (590)
T PRK13409        220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIREL  258 (590)
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998764

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.93  E-value=8.7e-26  Score=232.37  Aligned_cols=176  Identities=12%  Similarity=0.090  Sum_probs=126.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----CCC
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD  150 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----~~~  150 (255)
                      .+++++||++.|+.......+|+|||++|++|+++||+|||||||||||++|+|+.+...|++|+ .+++...    +..
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~  837 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS  837 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence            36899999999952111112569999999999999999999999999999999998411246788 4554322    223


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcC---CCCCccHHHHHHHHHhhccc--CCccCC----CCCcccccchhhhh
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDI  221 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~--~~~~~~----~lS~G~kqrv~la~  221 (255)
                      .|+ +.+++...  ..+++.+++.+......   .........+.++++.+++.  .+..+.    .||||||||++||+
T Consensus       838 i~y-v~Q~~~~~--~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~  914 (1394)
T TIGR00956       838 IGY-VQQQDLHL--PTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV  914 (1394)
T ss_pred             eee-ecccccCC--CCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence            455 45443322  23677777776544321   11111123456788888775  344444    69999999999999


Q ss_pred             hhccCCc-EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          222 LVGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~-illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|+.+|+ ||+|||||++||..+...+.++|++.
T Consensus       915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~l  948 (1394)
T TIGR00956       915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKL  948 (1394)
T ss_pred             HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            9999997 99999999999999999999998764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.93  E-value=1.1e-25  Score=232.01  Aligned_cols=170  Identities=15%  Similarity=0.105  Sum_probs=120.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cC-CCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQVK-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~-~~~~~-------  147 (255)
                      .|+++||++.|++.. ...+|+|+||+|++|+++||+||||||||||+++|+|++.   |++|+ .+ ++...       
T Consensus       382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~  457 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW  457 (1466)
T ss_pred             cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence            589999999997521 1225699999999999999999999999999999999998   99999 55 33211       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhc-C--------------------------------------------
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--------------------------------------------  181 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~-~--------------------------------------------  181 (255)
                       +..+|. +.++...+.   .++.+++.+..... +                                            
T Consensus       458 lr~~Ig~-V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1466)
T PTZ00265        458 WRSKIGV-VSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE  533 (1466)
T ss_pred             HHHhccE-ecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence             122454 454433222   24555544321000 0                                            


Q ss_pred             ------CCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293          182 ------APWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       182 ------~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~  242 (255)
                            .........+.++++.+++.             .......||||||||++|||||+.+|+||||||||++||+.
T Consensus       534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~  613 (1466)
T PTZ00265        534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK  613 (1466)
T ss_pred             hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence                  00012223445555544332             12346789999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 025293          243 VWKDVSSMFDEK  254 (255)
Q Consensus       243 ~~~~l~~ll~~~  254 (255)
                      +...+.+.|++.
T Consensus       614 se~~i~~~L~~~  625 (1466)
T PTZ00265        614 SEYLVQKTINNL  625 (1466)
T ss_pred             HHHHHHHHHHHH
Confidence            999999988753

>PLN03232 ABC transporter C family member; Provisional

Probab=99.92  E-value=1.6e-25  Score=232.05  Aligned_cols=162  Identities=15%  Similarity=0.083  Sum_probs=120.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +|+|+||+|++||++||+|++|||||||+++|.|+++   |++|+ .+++...        
T Consensus      1234 ~I~f~nVsf~Y~~~~~~--vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred             cEEEEEEEEEECCCCCc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence            59999999999653233  4599999999999999999999999999999999998   99999 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k  214 (255)
                      +...+. +.++.+.+.   -+..+       +.........+++.++++..++.         .+.    ....||||||
T Consensus      1309 R~~i~i-VpQdp~LF~---gTIr~-------NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232       1309 RRVLSI-IPQSPVLFS---GTVRF-------NIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred             HhhcEE-ECCCCeeeC---ccHHH-------HcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence            223454 666554332   13333       33332234445566666654432         222    2357999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||||+.+|+||||||||+.||..+.+.+.+.+++.
T Consensus      1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~ 1417 (1495)
T PLN03232       1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREE 1417 (1495)
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888653

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.92  E-value=2e-25  Score=230.17  Aligned_cols=171  Identities=14%  Similarity=0.103  Sum_probs=111.3

Q ss_pred             eEEecCchheehhhh-cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-C-C----------
Q 025293           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-F-D----------  143 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~-~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~-~----------  143 (255)
                      -|+++||+++|++.. ++  +|+|+||+|++|+++||+||||||||||+++|.|++.   |+.|.. . .          
T Consensus      1165 ~I~f~nVsF~Y~~~~~~~--vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~ 1239 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPNVP--IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNE 1239 (1466)
T ss_pred             eEEEEEEEEECCCCCCCc--cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Cccccccccccccccccccc
Confidence            489999999996421 23  5699999999999999999999999999999999997   742210 0 0          


Q ss_pred             -----------------------------CCCCCCCeEEEEecCCCCCCCccCC--------cccCh----HHHHHhcCC
Q 025293          144 -----------------------------SQVKPPDVATVLPMDGFHLYLSQLD--------AMEDP----KEAHARRGA  182 (255)
Q Consensus       144 -----------------------------~~~~~~~~g~~i~~~~~~~~~~~l~--------~~~~~----~~~~~~~~~  182 (255)
                                                   .....++.|. |.++|.++..-...        +.+++    .-++++..+
T Consensus      1240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~ 1318 (1466)
T PTZ00265       1240 QDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGK-ILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKF 1318 (1466)
T ss_pred             cccccccccccccccccccccccccccccccccCCCCCe-EEECCEEHHhCCHHHHHhhccEeCCCCccccccHHHHHhc
Confidence                                         0001123444 44454433210000        00000    001222222


Q ss_pred             C-CCccHHHHHHHHHhhcc---------cCCc----cCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH
Q 025293          183 P-WTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (255)
Q Consensus       183 ~-~~~~~~~~~~~l~~l~~---------~~~~----~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~  248 (255)
                      . ++...+.+..+++..++         +.+.    ....||||||||++|||||+.+|+||||||||+.||..+.+.+.
T Consensus      1319 g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~ 1398 (1466)
T PTZ00265       1319 GKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIE 1398 (1466)
T ss_pred             CCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHH
Confidence            1 12233444444443332         1232    33579999999999999999999999999999999999999999


Q ss_pred             HHHHh
Q 025293          249 SMFDE  253 (255)
Q Consensus       249 ~ll~~  253 (255)
                      +.|+.
T Consensus      1399 ~~L~~ 1403 (1466)
T PTZ00265       1399 KTIVD 1403 (1466)
T ss_pred             HHHHH
Confidence            88865

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.92  E-value=2.8e-25  Score=218.85  Aligned_cols=164  Identities=16%  Similarity=0.170  Sum_probs=113.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||++.|+.. +.+.+++|+||+|++|+.+|||||+||||||.+.+|-.+..   |++|. .+++...        
T Consensus       987 ~I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred             EEEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence            48999999999874 34557799999999999999999999999999999999997   88776 3333221        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHh---------hcccCCcc----CCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---------l~~~~~~~----~~~lS~G~k  214 (255)
                      +...|- |.+....+.   -+..+|+.+     |. ......++.+.++.         +-.+-+..    ..+||||||
T Consensus      1063 R~~i~l-VsQEP~LF~---~TIrENI~Y-----G~-~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1063 RKQIGL-VSQEPVLFN---GTIRENIAY-----GS-EEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred             HHhcce-eccCchhhc---ccHHHHHhc-----cC-CCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence            111222 222111111   122222222     11 11223333333332         11122333    458999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+|||||++.+|+||||||-|+.||.++.+.+.+.||..
T Consensus      1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a 1172 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRA 1172 (1228)
T ss_pred             HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHh
Confidence            9999999999999999999999999999999999998863

>PLN03130 ABC transporter C family member; Provisional

Probab=99.92  E-value=3.1e-25  Score=230.67  Aligned_cols=161  Identities=14%  Similarity=0.080  Sum_probs=120.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|.+..++  +|+|+||+|++||++||+|++|||||||+++|.|+++   |++|+ .+++...        
T Consensus      1237 ~I~f~nVsf~Y~~~~~~--VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPP--VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred             cEEEEEEEEEeCCCCCc--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence            59999999999653223  5599999999999999999999999999999999998   99999 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCCc----cCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~~----~~~~lS~G~k  214 (255)
                      +...+. +.++.+.+.   -++.+       +.........+++.++++..++         +.+.    ....||||||
T Consensus      1312 R~~Isi-VpQdp~LF~---GTIre-------NLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130       1312 RKVLGI-IPQAPVLFS---GTVRF-------NLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred             HhccEE-ECCCCcccc---ccHHH-------HhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence            223454 666655332   13333       3222223344555666655443         2222    2347999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++|||||+.+|+||||||+|+.||..+.+.+.+.|++
T Consensus      1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130       1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988875

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=2e-25  Score=182.65  Aligned_cols=172  Identities=18%  Similarity=0.132  Sum_probs=123.8

Q ss_pred             eEEecCchheehhh---hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CCCC--
Q 025293           77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKPP--  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~---~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~~~--  149 (255)
                      |+++.|+.+.|...   .++  +|+++|++|.+|+++.|+|.||||||||++.|+|.+.   |++|+ .+++. +.+.  
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~--~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~   75 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKR--ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSV   75 (263)
T ss_pred             CcccccceeeecCCChhHHH--HHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCH
Confidence            46778888888542   233  5599999999999999999999999999999999998   99998 44442 2211  


Q ss_pred             -----CeEEEEecCCCCCCCccCCcccChHHHHHh---cCCCCC---ccHHHHHHHHHhhccc----CCccCCCCCcccc
Q 025293          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT---FNPLLLLNCLKNLRNQ----GSVYAPSFDHGVG  214 (255)
Q Consensus       150 -----~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~---~~~~~~~~~l~~l~~~----~~~~~~~lS~G~k  214 (255)
                           .... ++++...-..+.+++.+|......+   +|+...   .....+..-+..++++    ...++.-||||||
T Consensus        76 ~~RA~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQR  154 (263)
T COG1101          76 AKRANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQR  154 (263)
T ss_pred             HHHhhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHH
Confidence                 1122 3344333333457777777655443   333221   1122334445555554    4567788999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |-+++++|....|+||+|||-|+.|||...+.++++-.+.
T Consensus       155 QalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~ki  194 (263)
T COG1101         155 QALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKI  194 (263)
T ss_pred             HHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHH
Confidence            9999999999999999999999999999999888876554

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.92  E-value=7.4e-25  Score=199.32  Aligned_cols=164  Identities=19%  Similarity=0.166  Sum_probs=124.3

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEE
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVAT  153 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~  153 (255)
                      +.+++.+.|+++.|.++. .  ++++++|-|..++.+++|||||||||||||++.|.+.   |..|.+        ..+.
T Consensus       386 p~pvi~~~nv~F~y~~~~-~--iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~v--------s~~~  451 (614)
T KOG0927|consen  386 PPPVIMVQNVSFGYSDNP-M--IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMV--------SRHS  451 (614)
T ss_pred             CCCeEEEeccccCCCCcc-h--hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccc--------cccc
Confidence            357899999999998742 3  4599999999999999999999999999999999998   988852        1111


Q ss_pred             EEecCCCCCCCcc-CCcc-cChHHHHHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCCc
Q 025293          154 VLPMDGFHLYLSQ-LDAM-EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       154 ~i~~~~~~~~~~~-l~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      ...+..|.+...+ ++.. ....+....+  +.......+..++.++++..   ..++.+||.|||.||.+|+.++..|.
T Consensus       452 H~~~~~y~Qh~~e~ldl~~s~le~~~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~  529 (614)
T KOG0927|consen  452 HNKLPRYNQHLAEQLDLDKSSLEFMMPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPH  529 (614)
T ss_pred             cccchhhhhhhHhhcCcchhHHHHHHHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCc
Confidence            1222333332211 1111 1122222222  22345667889999999984   46778999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|||||||++||.++...+.+.|.+
T Consensus       530 lLlLDEPtnhLDi~tid~laeaiNe  554 (614)
T KOG0927|consen  530 LLLLDEPTNHLDIETIDALAEAINE  554 (614)
T ss_pred             EEEecCCCcCCCchhHHHHHHHHhc
Confidence            9999999999999999999998865

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.92  E-value=3.6e-25  Score=197.29  Aligned_cols=136  Identities=16%  Similarity=0.163  Sum_probs=100.7

Q ss_pred             EECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293          112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       112 LiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (255)
                      |+||||||||||+|+|+|+++   |++|+ .+++...      ...+|+ +.++...+  ..+++.+++.+.....+...
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~   74 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINM-VFQSYALF--PHMTVEENVAFGLKMRKVPR   74 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEE-EecCcccc--CCCcHHHHHHHHHhhcCCCH
Confidence            689999999999999999998   99999 4544321      123555 44433222  22567676665443333221


Q ss_pred             CccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          185 TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ......+.++++.+++.  .++++..|||||+||+++|++|+.+|++|||||||++||+..+..+.++|.+
T Consensus        75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~  145 (325)
T TIGR01187        75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT  145 (325)
T ss_pred             HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            11223456788888775  4677889999999999999999999999999999999999999999998865

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>PTZ00243 ABC transporter; Provisional

Probab=99.92  E-value=8.4e-25  Score=227.00  Aligned_cols=161  Identities=11%  Similarity=0.080  Sum_probs=121.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|.+..+.  +|+|+||+|++||++||+|++|||||||+++|.|+++   |++|+ .+++...        
T Consensus      1308 ~I~f~nVsf~Y~~~~~~--vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLPL--VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred             eEEEEEEEEEeCCCCCc--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence            59999999999763223  5599999999999999999999999999999999998   99999 4555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k  214 (255)
                      +..++. +.++.+.+.   -++.+|+       .........++..+++..++.         .+.    ....||||||
T Consensus      1383 R~~I~i-VpQdp~LF~---gTIreNI-------dp~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243       1383 RRQFSM-IPQDPVLFD---GTVRQNV-------DPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred             HhcceE-ECCCCcccc---ccHHHHh-------CcccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence            233454 666655432   1333333       222234456666777765543         222    2357999999


Q ss_pred             cchhhhhhhccC-CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~-~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++|||||+.+ |+||||||||+.||+.+.+.+.+.|.+
T Consensus      1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243       1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999985 899999999999999999999988865

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.2e-24  Score=179.90  Aligned_cols=171  Identities=19%  Similarity=0.139  Sum_probs=117.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+...++. +.  +|++||++|++||+++|+||||||||||.++|+|.-... +++|+ .+++...      
T Consensus         1 m~~L~I~dLhv~v~~~-ke--ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~-Vt~G~I~~~GedI~~l~~~   76 (251)
T COG0396           1 MMMLEIKDLHVEVEGK-KE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE-VTEGEILFDGEDILELSPD   76 (251)
T ss_pred             CceeEEeeeEEEecCc-hh--hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce-EecceEEECCcccccCCHh
Confidence            4689999999999873 24  459999999999999999999999999999999975221 56777 4554321      


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHh----cCCCC--CccHHHHHHHHHhhcccC---CccCC-CCCcccccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW--TFNPLLLLNCLKNLRNQG---SVYAP-SFDHGVGDP  216 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~--~~~~~~~~~~l~~l~~~~---~~~~~-~lS~G~kqr  216 (255)
                       +...|..+.+++. ..   .+......+.+.-    .+...  ......+.+.++.+++..   +++++ -||||||+|
T Consensus        77 ERAr~GifLafQ~P-~e---i~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR  152 (251)
T COG0396          77 ERARAGIFLAFQYP-VE---IPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKR  152 (251)
T ss_pred             HHHhcCCEEeecCC-cc---CCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHH
Confidence             1223433332221 11   2222222332211    11111  011234456677777653   44444 589999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ..++.+++.+|++.|||||-+|||..+-+.+.+.+..
T Consensus       153 ~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~  189 (251)
T COG0396         153 NEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINA  189 (251)
T ss_pred             HHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHH
Confidence            9999999999999999999999999988888777654

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.92  E-value=7e-25  Score=217.45  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=138.7

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      ...+.++|++|.|+...+   +++++++.|++||+.|++|+|||||||+++||+|..+   |++|+ .+.+....     
T Consensus       562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~  635 (885)
T KOG0059|consen  562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF  635 (885)
T ss_pred             cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence            467899999999988432   6699999999999999999999999999999999998   99999 44443221     


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                          ...|+. .+.+.  ....++..+......+.+|++.......+..+++.+++.  .+++++.||||+|+|+.+|.+
T Consensus       636 ~~~~~~iGyC-PQ~d~--l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia  712 (885)
T KOG0059|consen  636 QQVRKQLGYC-PQFDA--LWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA  712 (885)
T ss_pred             hhhhhhcccC-Cchhh--hhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence                124542 22221  123478888888888889986544445567788888876  567789999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.+|++++||||++|+||..++.+++++.+.
T Consensus       713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~  744 (885)
T KOG0059|consen  713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARL  744 (885)
T ss_pred             HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999764

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.91  E-value=1e-24  Score=226.50  Aligned_cols=161  Identities=15%  Similarity=0.058  Sum_probs=121.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +|+|+||+|++||++||+|++|||||||+++|.|+++   |++|+ .+++...        
T Consensus      1284 ~I~f~nVsf~Y~~~~~~--vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDL--VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred             cEEEEEEEEEeCCCCcc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence            59999999999753223  5699999999999999999999999999999999998   99998 5555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCcc----CCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~k  214 (255)
                      +...+. +.++.+.+..   +..+|+       ........+++.++++..++.         .+..    ...||||||
T Consensus      1359 R~~i~i-VpQdp~LF~g---TIr~NL-------dp~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957      1359 RFKITI-IPQDPVLFSG---SLRMNL-------DPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred             HhcCeE-ECCCCcccCc---cHHHHc-------CcccCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence            223454 6666554331   333332       211234445566666655432         2322    356999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||||+.+|+||||||||+.||..+...+.+.|++
T Consensus      1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957      1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988865

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.91  E-value=1.1e-24  Score=209.15  Aligned_cols=152  Identities=14%  Similarity=0.073  Sum_probs=114.4

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCc-cCCCCCC-----CCCeEEEEecCCCCCCCcc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~  166 (255)
                      +|+|+|+++++||+++|+|||||||||||++|+|..+   |.   +|+ .+++...     +...|+ +.+++...  ..
T Consensus        40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~y-v~Q~~~~~--~~  113 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAY-VQQDDLFI--PT  113 (617)
T ss_pred             cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhcee-eccccccC--cc
Confidence            5599999999999999999999999999999999885   53   677 4554321     123455 45444332  23


Q ss_pred             CCcccChHHHHHhcCCCC----CccHHHHHHHHHhhcccC--CccCC------CCCcccccchhhhhhhccCCcEEEEcC
Q 025293          167 LDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQG--SVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       167 l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~~--~~~~~------~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      +++.+++.+..... .+.    ......+.++++.+++..  +..+.      .+|||||||+++|++|+.+|+++++||
T Consensus       114 lTV~e~l~f~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE  192 (617)
T TIGR00955       114 LTVREHLMFQAHLR-MPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE  192 (617)
T ss_pred             CcHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence            67878777654432 222    122234677888888753  44443      599999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHhh
Q 025293          235 NYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++||..+...+.+.+++.
T Consensus       193 PtsgLD~~~~~~l~~~L~~l  212 (617)
T TIGR00955       193 PTSGLDSFMAYSVVQVLKGL  212 (617)
T ss_pred             CCcchhHHHHHHHHHHHHHH
Confidence            99999999999999998753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.91  E-value=3.4e-25  Score=173.08  Aligned_cols=118  Identities=21%  Similarity=0.244  Sum_probs=82.4

Q ss_pred             ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHH
Q 025293           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (255)
Q Consensus        97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~  176 (255)
                      |+|+||+|++|++++|+|+||||||||+++|+|..+   |++|.              +.+++..+..      ......
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~--------------i~~~~~~~~~------~~~~~~   57 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGS--------------ILINGKDISD------IDIEEL   57 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEE--------------EEETTEEGTT------SHHHHH
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccc--------------cccccccccc------cccccc
Confidence            489999999999999999999999999999999996   66664              3333322211      000111


Q ss_pred             HHhcCC-CCC------------ccHHHHHHHHHhhcccC--CccC----CCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293          177 HARRGA-PWT------------FNPLLLLNCLKNLRNQG--SVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       177 ~~~~~~-~~~------------~~~~~~~~~l~~l~~~~--~~~~----~~lS~G~kqrv~la~~l~~~~~illlDep~~  237 (255)
                      ....++ ++.            ........+++.+++..  ...+    ..||+||+||+++|++++.+|+++|+||||+
T Consensus        58 ~~~i~~~~~~~~~~~~~tv~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   58 RRRIGYVPQDPQLFPGLTVRENESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             HHTEEEEESSHCHHTTSBHHHHHHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            111111 111            12234556677666543  3333    8999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>PLN03140 ABC transporter G family member; Provisional

Probab=99.91  E-value=2.7e-24  Score=221.26  Aligned_cols=173  Identities=13%  Similarity=0.075  Sum_probs=123.6

Q ss_pred             eEEecCchheehhhh---------cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC
Q 025293           77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~---------~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~  146 (255)
                      .+..+||++..+...         ....+|+|+|+.+++|++++|+|||||||||||++|+|..... +.+|+ .+++..
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g-~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGG-YIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCC-cccceEEECCcc
Confidence            578899987764210         1122569999999999999999999999999999999986400 25677 444432


Q ss_pred             C-----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCc----cHHHHHHHHHhhcccC--CccC-----CCCC
Q 025293          147 K-----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF----NPLLLLNCLKNLRNQG--SVYA-----PSFD  210 (255)
Q Consensus       147 ~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~l~~~~--~~~~-----~~lS  210 (255)
                      .     ....|+ +.+++...  ..+++.+++.+..... .+...    ....+.++++.+++..  +..+     ..||
T Consensus       946 ~~~~~~~~~igy-v~Q~d~~~--~~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140        946 KKQETFARISGY-CEQNDIHS--PQVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred             CChHHhhhheEE-EccccccC--CCCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence            1     123455 45544322  2367877776654322 22211    1223567888887752  3333     5799


Q ss_pred             cccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||||++||++|+.+|++|++||||++||..+...+++++.+.
T Consensus      1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l 1065 (1470)
T PLN03140       1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNT 1065 (1470)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998763

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.90  E-value=5.8e-24  Score=220.40  Aligned_cols=161  Identities=14%  Similarity=0.143  Sum_probs=121.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|+...+.  +|+|+||+|++||++||+|++|||||||+++|.|+.    +.+|+ .+++...        
T Consensus      1217 ~I~f~nVs~~Y~~~~~~--vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRA--VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred             eEEEEEEEEEeCCCCcc--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence            58999999999753234  559999999999999999999999999999999998    67888 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCcc----CCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~k  214 (255)
                      +...+. +.++.+.+..   ++.+|+       ..........+.++++.+++.         .+..    ...||+|||
T Consensus      1291 R~~is~-IpQdp~LF~G---TIR~NL-------dp~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271      1291 RKAFGV-IPQKVFIFSG---TFRKNL-------DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred             HhceEE-EeCCCccCcc---CHHHHh-------CcccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence            223454 6666654331   333333       222233456667777766552         2222    236999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||||+.+|+||||||||++||......+.+.|.+.
T Consensus      1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~ 1399 (1490)
T TIGR01271      1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399 (1490)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888653

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.90  E-value=7.7e-24  Score=219.94  Aligned_cols=155  Identities=14%  Similarity=0.119  Sum_probs=112.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEE
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (255)
                      .++++|+++.|++..++  +|+|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++     .+++ +
T Consensus       636 ~i~~~~~~~~~~~~~~~--~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~y-v  704 (1522)
T TIGR00957       636 SITVHNATFTWARDLPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAY-V  704 (1522)
T ss_pred             cEEEEEeEEEcCCCCCc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEE-E
Confidence            69999999999753233  4599999999999999999999999999999999998   99997 3332     3454 4


Q ss_pred             ecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHh------hcc---c----CCccCCCCCcccccchhhhhh
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN------LRN---Q----GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------l~~---~----~~~~~~~lS~G~kqrv~la~~  222 (255)
                      .++...+.   .++.+++.+     +  ...+.....++++.      +..   +    ...+...||||||||+++|||
T Consensus       705 ~Q~~~l~~---~Ti~eNI~~-----g--~~~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA  774 (1522)
T TIGR00957       705 PQQAWIQN---DSLRENILF-----G--KALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA  774 (1522)
T ss_pred             cCCccccC---CcHHHHhhc-----C--CccCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence            44433211   243333322     1  11122222222222      221   1    124467899999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      +..+|+++|+||||++||+...+.+.+.+.
T Consensus       775 l~~~~~illLDEp~saLD~~~~~~i~~~l~  804 (1522)
T TIGR00957       775 VYSNADIYLFDDPLSAVDAHVGKHIFEHVI  804 (1522)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHHh
Confidence            999999999999999999999999988764

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=1.8e-23  Score=177.36  Aligned_cols=155  Identities=14%  Similarity=0.088  Sum_probs=91.6

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHH-HHHHHHhcccC-----CCCCccCCCCCCCC--------CeEEEEecCCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRINKIW-----PQKASSFDSQVKPP--------DVATVLPMDGFH  161 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLL-k~L~Gll~~~~-----p~~G~~~~~~~~~~--------~~g~~i~~~~~~  161 (255)
                      +++++||+|++||++||+|+||||||||+ ..|...-+..+     |..+...+ ....+        .....+..+...
T Consensus        10 ~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~   88 (226)
T cd03270          10 NLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLG-QMDKPDVDSIEGLSPAIAIDQKTTS   88 (226)
T ss_pred             ccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhhhc-ccCccccccccCCCceEEecCCCCC
Confidence            67999999999999999999999999996 43332100000     11110000 00001        111111111111


Q ss_pred             CCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCC
Q 025293          162 LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGN  235 (255)
Q Consensus       162 ~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep  235 (255)
                       .....++.. ....... ..+..........+.++.+++.   .+.++..||+||+||+++|++|+.+|  +++|+|||
T Consensus        89 -~~~~~~v~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEP  166 (226)
T cd03270          89 -RNPRSTVGT-VTEIYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEP  166 (226)
T ss_pred             -CCCCccHHH-HHHHHHHHHHHhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence             000001100 0000001 0111111122235677888774   46788999999999999999999998  59999999


Q ss_pred             CCCCChhHHHHHHHHHHh
Q 025293          236 YLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       236 ~~~LD~~~~~~l~~ll~~  253 (255)
                      |++||+..+..+.++|.+
T Consensus       167 t~gLD~~~~~~l~~~l~~  184 (226)
T cd03270         167 SIGLHPRDNDRLIETLKR  184 (226)
T ss_pred             ccCCCHHHHHHHHHHHHH
Confidence            999999999999999865

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PLN03232 ABC transporter C family member; Provisional

Probab=99.90  E-value=1.6e-23  Score=217.32  Aligned_cols=154  Identities=17%  Similarity=0.143  Sum_probs=112.3

Q ss_pred             eEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      .++++|+++.|++. .++  +|+|+||+|++|+.++|+||+|||||||+++|+|+++   |++|....   ....+++ +
T Consensus       614 ~I~~~~vsF~y~~~~~~~--vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~---~~~~Iay-v  684 (1495)
T PLN03232        614 AISIKNGYFSWDSKTSKP--TLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV---IRGSVAY-V  684 (1495)
T ss_pred             cEEEEeeEEEcCCCCCCc--eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE---ecCcEEE-E
Confidence            58999999999752 123  4599999999999999999999999999999999998   88885211   1234454 5


Q ss_pred             ecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccccchhhhhh
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~kqrv~la~~  222 (255)
                      .++.+-+.   -++.+|+.+       ...++.+.+.++++..++.         .+.    ....||||||||+++|||
T Consensus       685 ~Q~p~Lf~---gTIreNI~f-------g~~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARA  754 (1495)
T PLN03232        685 PQVSWIFN---ATVRENILF-------GSDFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARA  754 (1495)
T ss_pred             cCcccccc---ccHHHHhhc-------CCccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHH
Confidence            55544332   244443332       2223445555555544432         122    234799999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      +..+|+|+||||||++||+.+.+++.+
T Consensus       755 ly~~~~IlLLDEptSaLD~~t~~~I~~  781 (1495)
T PLN03232        755 VYSNSDIYIFDDPLSALDAHVAHQVFD  781 (1495)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHH
Confidence            999999999999999999998877754

>PLN03130 ABC transporter C family member; Provisional

Probab=99.89  E-value=2.6e-23  Score=216.37  Aligned_cols=153  Identities=19%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             eEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC-CccCCCCCCCCCeEEE
Q 025293           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATV  154 (255)
Q Consensus        77 ~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~-G~~~~~~~~~~~~g~~  154 (255)
                      .|+++|+++.|++. .++  +|+|+||+|++|++++|+||+|||||||+++|+|+++   |++ |++.-    ...+++ 
T Consensus       614 ~I~~~nvsf~y~~~~~~~--vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~Iay-  683 (1622)
T PLN03130        614 AISIKNGYFSWDSKAERP--TLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGTVAY-  683 (1622)
T ss_pred             ceEEEeeEEEccCCCCCc--eeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCeEEE-
Confidence            58999999999742 123  4599999999999999999999999999999999998   888 76321    233454 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccccchhhhh
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~kqrv~la~  221 (255)
                      +.++.+-+.   -++.+|+.       +...++.+.+.++++..++.         .+.    ....||||||||+++||
T Consensus       684 v~Q~p~Lfn---gTIreNI~-------fg~~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR  753 (1622)
T PLN03130        684 VPQVSWIFN---ATVRDNIL-------FGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR  753 (1622)
T ss_pred             EcCccccCC---CCHHHHHh-------CCCcccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence            555544332   24444333       22223445555665554432         122    23469999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      |+..+|+|+||||||++||+...+++.+
T Consensus       754 Aly~~~~IlLLDEptSALD~~~~~~I~~  781 (1622)
T PLN03130        754 AVYSNSDVYIFDDPLSALDAHVGRQVFD  781 (1622)
T ss_pred             HHhCCCCEEEECCCccccCHHHHHHHHH
Confidence            9999999999999999999988777653

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.89  E-value=1.4e-23  Score=216.16  Aligned_cols=156  Identities=13%  Similarity=0.056  Sum_probs=112.8

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcc-cCCCCCc-cCCCCCC-------CCCeEEEEecCCCCCCCcc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~-~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~  166 (255)
                      +|+|+|+.+++||+++|+||||||||||||+|+|+... .-|++|+ .+++...       +..+++ +.+++...  ..
T Consensus        76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y-v~Q~d~~~--~~  152 (1394)
T TIGR00956        76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY-NAETDVHF--PH  152 (1394)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE-eccccccC--CC
Confidence            56999999999999999999999999999999998621 0168898 4554321       122454 44443322  23


Q ss_pred             CCcccChHHHHHhcCC---CCCcc----HHH-HHHHHHhhcccC--C-----ccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          167 LDAMEDPKEAHARRGA---PWTFN----PLL-LLNCLKNLRNQG--S-----VYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       167 l~~~~~~~~~~~~~~~---~~~~~----~~~-~~~~l~~l~~~~--~-----~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                      +++.+++.+.......   .....    ... ...+++.+++..  +     ..+..|||||||||+||++|+.+|++++
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence            6888877765443210   00111    112 234677787753  2     2356799999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHhh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||++||..+...+.++|++.
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~l  255 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKTS  255 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999999999998763

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.89  E-value=4.2e-24  Score=192.49  Aligned_cols=162  Identities=18%  Similarity=0.201  Sum_probs=111.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||++.|+.. +++  |+||||++.+|+.++|+||+|+||||++|+|..+..   .++|. .++++..        
T Consensus       537 ~i~fsnvtF~Y~p~-k~v--l~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~SL  610 (790)
T KOG0056|consen  537 KIEFSNVTFAYDPG-KPV--LSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSSL  610 (790)
T ss_pred             eEEEEEeEEecCCC-Cce--eecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHHH
Confidence            58999999999874 454  499999999999999999999999999999999997   77887 4554322        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHH------Hh-hcccC--C----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL------KN-LRNQG--S----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l------~~-l~~~~--~----~~~~~lS~G~k  214 (255)
                      +..+|. +.+|-..+.+   +...++++.+     + ....+++....      ++ +.++.  .    .+.-.||||||
T Consensus       611 Rs~IGV-VPQDtvLFNd---TI~yNIryak-----~-~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEK  680 (790)
T KOG0056|consen  611 RSSIGV-VPQDTVLFND---TILYNIRYAK-----P-SASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEK  680 (790)
T ss_pred             HHhcCc-ccCcceeecc---eeeeheeecC-----C-CCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcch
Confidence            223443 4444332221   2222222211     1 11112221111      11 22221  1    23347999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||++||++...|.+++|||.|+.||....+++...+.+.
T Consensus       681 QRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rl  720 (790)
T KOG0056|consen  681 QRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARL  720 (790)
T ss_pred             hhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999998888777654

>PLN03140 ABC transporter G family member; Provisional

Probab=99.89  E-value=2.3e-23  Score=214.46  Aligned_cols=153  Identities=15%  Similarity=0.156  Sum_probs=114.9

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC---CCc-cCCCCCC-----CCCeEEEEecCCCCCCCcc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~  166 (255)
                      +|+|+|+.|++|++++|+||||||||||||+|+|.+.   |+   +|+ .+++...     +...++ +.+++...  ..
T Consensus       180 IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~y-v~Q~d~~~--~~  253 (1470)
T PLN03140        180 ILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAY-ISQNDVHV--GV  253 (1470)
T ss_pred             eccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEE-ecccccCC--Cc
Confidence            5699999999999999999999999999999999997   77   888 4554321     223455 45444332  23


Q ss_pred             CCcccChHHHHHhcCCCC----------C---------ccH---------------HHHHHHHHhhcccC-------Ccc
Q 025293          167 LDAMEDPKEAHARRGAPW----------T---------FNP---------------LLLLNCLKNLRNQG-------SVY  205 (255)
Q Consensus       167 l~~~~~~~~~~~~~~~~~----------~---------~~~---------------~~~~~~l~~l~~~~-------~~~  205 (255)
                      +++.+++.+.....+...          .         ...               .....+++.+++..       +..
T Consensus       254 lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~  333 (1470)
T PLN03140        254 MTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEM  333 (1470)
T ss_pred             CcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCcc
Confidence            788888777554332110          0         000               01245677777752       445


Q ss_pred             CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +..+||||||||.+|++++.+|+++++||||+|||..+..++.+.+.+.
T Consensus       334 ~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~l  382 (1470)
T PLN03140        334 IRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI  382 (1470)
T ss_pred             ccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHH
Confidence            6789999999999999999999999999999999999999999998763

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.89  E-value=2.3e-23  Score=199.10  Aligned_cols=172  Identities=13%  Similarity=0.112  Sum_probs=128.9

Q ss_pred             eEEecCchheehhh---hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293           77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~---~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      -+..++++....+.   .+.  +|+|||..+++||+.||+||+||||||||++|+|...+....+|+ .+++...     
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~--iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~  102 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKT--ILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSF  102 (613)
T ss_pred             eeEEEEEEEEecCCCCccce--eeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhh
Confidence            35566666555442   234  559999999999999999999999999999999998421235676 4555221     


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC----CccHHHHHHHHHhhccc--CCccC-----CCCCcccccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDP  216 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~l~~l~~~--~~~~~-----~~lS~G~kqr  216 (255)
                      +...|+ +.+++.....  +|+.|.+.+....+ .+.    ......+.++++.+++.  .+..+     ..+|||||+|
T Consensus       103 ~~~s~y-V~QdD~l~~~--LTV~EtL~f~A~lr-lp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkR  178 (613)
T KOG0061|consen  103 RKISGY-VQQDDVLLPT--LTVRETLRFSALLR-LPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKR  178 (613)
T ss_pred             hheeEE-Eccccccccc--ccHHHHHHHHHHhc-CCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhH
Confidence            234565 7777664443  78888877766543 333    33345677888888886  34444     3599999999


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|.-|+.+|.||++||||+|||..+..++.+++++.
T Consensus       179 vsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~l  216 (613)
T KOG0061|consen  179 VSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRL  216 (613)
T ss_pred             HHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHH
Confidence            99999999999999999999999999999999998764

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.89  E-value=3.6e-23  Score=187.31  Aligned_cols=163  Identities=15%  Similarity=0.113  Sum_probs=113.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      -.+.+++++..=.+.++++  ++++||++.+||.+|||||||||||||.|+|.|..+   |.+|. .+++-..       
T Consensus       333 g~L~Ve~l~~~PPg~~~pi--l~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~  407 (580)
T COG4618         333 GALSVERLTAAPPGQKKPI--LKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQ  407 (580)
T ss_pred             ceeeEeeeeecCCCCCCcc--eecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHH
Confidence            3799999988666544454  499999999999999999999999999999999998   99998 4444221       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHhhcccCCccC----CCCCccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYA----PSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~l~~~~~~~~----~~lS~G~  213 (255)
                       ...+|+ ..++=..+.   -|+.+|+..    +  ..+.+.+.+         .+++-++-.+-+..+    ..|||||
T Consensus       408 lG~hiGY-LPQdVeLF~---GTIaeNIaR----f--~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ  477 (580)
T COG4618         408 LGRHIGY-LPQDVELFD---GTIAENIAR----F--GEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ  477 (580)
T ss_pred             hccccCc-CcccceecC---CcHHHHHHh----c--cccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence             122333 222211111   133332221    1  112222222         333333333334443    4799999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++||++-.+|.+++||||-+.||......+.+.|..
T Consensus       478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~  517 (580)
T COG4618         478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILA  517 (580)
T ss_pred             HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888764

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.88  E-value=1.2e-22  Score=210.72  Aligned_cols=136  Identities=11%  Similarity=0.157  Sum_probs=98.0

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~  174 (255)
                      +|+|+||+|++|++++|+|||||||||||++|+|+++   |++|+ .+++     .+++ +.+....+.   .++.+++.
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iay-v~Q~~~l~~---~Ti~eNI~  508 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISF-SPQTSWIMP---GTIKDNII  508 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEE-EeCCCccCC---ccHHHHHH
Confidence            5699999999999999999999999999999999998   99997 3332     2454 444433221   24444443


Q ss_pred             HHHHhcCCCCCccHHHHH---------HHHHhhcccC----CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          175 EAHARRGAPWTFNPLLLL---------NCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~---------~~l~~l~~~~----~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      +..     .  ++.....         ..++.+..+.    ......||||||||+++|||+..+|+++|||||+++||+
T Consensus       509 ~g~-----~--~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~  581 (1490)
T TIGR01271       509 FGL-----S--YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV  581 (1490)
T ss_pred             hcc-----c--cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            221     1  1111111         2222222221    234578999999999999999999999999999999999


Q ss_pred             hHHHHHHHH
Q 025293          242 GVWKDVSSM  250 (255)
Q Consensus       242 ~~~~~l~~l  250 (255)
                      ...+.+.+.
T Consensus       582 ~~~~~i~~~  590 (1490)
T TIGR01271       582 VTEKEIFES  590 (1490)
T ss_pred             HHHHHHHHH
Confidence            999999874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.86  E-value=6.4e-22  Score=176.63  Aligned_cols=161  Identities=19%  Similarity=0.217  Sum_probs=122.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      .+++-+.+|+|.|.+. ++++  .+++|-|.=-..|||+||||.||||||++|.|-+.   |..|+.....  +      
T Consensus       584 PPvLGlH~VtFgy~gq-kpLF--kkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh--r------  649 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQ-KPLF--KKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH--R------  649 (807)
T ss_pred             CCeeecccccccCCCC-Cchh--hcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc--e------
Confidence            4799999999999653 4544  99999999999999999999999999999999998   9999732211  1      


Q ss_pred             EecCCCCCCC-ccCCcccChHHH-HHhcCCCCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCCcE
Q 025293          155 LPMDGFHLYL-SQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       155 i~~~~~~~~~-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      +.++-|++.. ..++..+.+..+ .+.+.++    ....+..+..+++..   ...+..|||||+.||++|-.-+..|+|
T Consensus       650 L~iG~FdQh~~E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDv  725 (807)
T KOG0066|consen  650 LRIGWFDQHANEALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDV  725 (807)
T ss_pred             eeeechhhhhHHhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCE
Confidence            2222233221 224555544433 3333332    345677788888763   466889999999999999988999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||||||..||..+...+.+.|.+
T Consensus       726 lILDEPTNNLDIESIDALaEAIne  749 (807)
T KOG0066|consen  726 LILDEPTNNLDIESIDALAEAINE  749 (807)
T ss_pred             EEecCCCCCcchhhHHHHHHHHHh
Confidence            999999999999999999888865

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.86  E-value=1.2e-21  Score=162.79  Aligned_cols=131  Identities=12%  Similarity=0.078  Sum_probs=90.3

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc----------cCCCCCC-----CCCeEEEEecCCCCC
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS----------SFDSQVK-----PPDVATVLPMDGFHL  162 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~----------~~~~~~~-----~~~~g~~i~~~~~~~  162 (255)
                      +++++++.+| +++|+||||||||||+++|+|++.   |..|.          ++.+...     ...++. +.++...+
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-vfq~~~~~   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL-TFDNSDGR   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEE-EEEcCCCc
Confidence            6788999999 999999999999999999999985   44332          1111110     011222 11111100


Q ss_pred             CCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCC
Q 025293          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLF  238 (255)
Q Consensus       163 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~  238 (255)
                                       ++..   ....+.++++. .-..+..+..||+||+||+++|++++    .+|+++|+|||+++
T Consensus        89 -----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~  147 (197)
T cd03278          89 -----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA  147 (197)
T ss_pred             -----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence                             0000   12234455555 22345678899999999999999986    46799999999999


Q ss_pred             CChhHHHHHHHHHHhh
Q 025293          239 LDGGVWKDVSSMFDEK  254 (255)
Q Consensus       239 LD~~~~~~l~~ll~~~  254 (255)
                      ||+.....+.+++.+.
T Consensus       148 LD~~~~~~l~~~l~~~  163 (197)
T cd03278         148 LDDANVERFARLLKEF  163 (197)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999998764

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.86  E-value=6.1e-22  Score=169.42  Aligned_cols=52  Identities=15%  Similarity=0.086  Sum_probs=46.4

Q ss_pred             CccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.++..||+||+||+++|++++    .+|+++|+|||+++||+..+..+.+.+.+.
T Consensus       153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~  208 (243)
T cd03272         153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKEL  208 (243)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            3567889999999999999996    358999999999999999999999988763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PTZ00243 ABC transporter; Provisional

Probab=99.85  E-value=1.6e-21  Score=202.63  Aligned_cols=136  Identities=16%  Similarity=0.106  Sum_probs=97.2

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +|+|+||+|++|++++|+|||||||||||++|+|+++   |++|++.-    ...+++ +.+....+ .  .++.+++.+
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~----~~~i~y-v~Q~~~l~-~--~Tv~enI~~  743 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWA----ERSIAY-VPQQAWIM-N--ATVRGNILF  743 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE----CCeEEE-EeCCCccC-C--CcHHHHHHc
Confidence            5599999999999999999999999999999999998   99997321    223555 44443321 1  244444332


Q ss_pred             HHHhcCCCCCccHHHH---------HHHHHhh--ccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293          176 AHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~---------~~~l~~l--~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~  242 (255)
                      .       ...+....         ...++.+  ++.  ...+...||||||||+++||++..+|+++|||||+++||+.
T Consensus       744 ~-------~~~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~  816 (1560)
T PTZ00243        744 F-------DEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH  816 (1560)
T ss_pred             C-------ChhhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence            1       11111111         2223333  221  23557789999999999999999999999999999999999


Q ss_pred             HHHHHHH
Q 025293          243 VWKDVSS  249 (255)
Q Consensus       243 ~~~~l~~  249 (255)
                      ..+.+.+
T Consensus       817 ~~~~i~~  823 (1560)
T PTZ00243        817 VGERVVE  823 (1560)
T ss_pred             HHHHHHH
Confidence            8877765

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.85  E-value=4.3e-21  Score=179.50  Aligned_cols=157  Identities=18%  Similarity=0.136  Sum_probs=117.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCccCCCCCCCC-CeE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPP-DVA  152 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-~G~~~~~~~~~~-~~g  152 (255)
                      ...|.++||+..-++.. .  .+++.+|+|++|+.+-|.|+||||||||+|.|+|+-    |. +|++     ..| +..
T Consensus       390 ~~~i~~~nl~l~~p~~~-~--ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I-----~~P~~~~  457 (604)
T COG4178         390 DHGITLENLSLRTPDGQ-T--LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW----PWGSGRI-----SMPADSA  457 (604)
T ss_pred             cceeEEeeeeEECCCCC-e--eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC----ccCCCce-----ecCCCCc
Confidence            36899999999987743 3  459999999999999999999999999999999997    43 3431     011 110


Q ss_pred             -EEEecCCCCCCCccCCcccChHHHHHhcCCCC---CccHHHHHHHHHhhccc--------CCccCCCCCcccccchhhh
Q 025293          153 -TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       153 -~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~--------~~~~~~~lS~G~kqrv~la  220 (255)
                       -++++-.|      ++   ... .++..-+|.   .+....+.++|..++++        ....-..||+|||||+++|
T Consensus       458 ~lflpQ~PY------~p---~Gt-Lre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafA  527 (604)
T COG4178         458 LLFLPQRPY------LP---QGT-LREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFA  527 (604)
T ss_pred             eEEecCCCC------CC---Ccc-HHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHH
Confidence             01121111      11   111 223333332   25667788888888876        2345568999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |.+.++|++++|||-|++|||.....+.+++++
T Consensus       528 RilL~kP~~v~LDEATsALDe~~e~~l~q~l~~  560 (604)
T COG4178         528 RLLLHKPKWVFLDEATSALDEETEDRLYQLLKE  560 (604)
T ss_pred             HHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence            999999999999999999999999999999986

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.84  E-value=3e-21  Score=174.99  Aligned_cols=157  Identities=12%  Similarity=0.013  Sum_probs=105.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      -|.+.+++..||+  +.  +|++-++++..|..+||+|+||+|||||||+|+.-.-..+|..-+         -.|..+.
T Consensus        80 Di~~~~fdLa~G~--k~--LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE---------~~g~~t~  146 (582)
T KOG0062|consen   80 DIHIDNFDLAYGG--KI--LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQE---------VRGDDTE  146 (582)
T ss_pred             ceeeeeeeeeecc--hh--hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhh---------eeccchH
Confidence            4778889999998  44  459999999999999999999999999999998711000121100         0111110


Q ss_pred             --cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH-HHHhhcccC---CccCCCCCcccccchhhhhhhccCCcEE
Q 025293          157 --MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       157 --~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                        +++..      .......+..+...+........+.. +|.-++|..   ..++..||||-|.|+++||||..+|++|
T Consensus       147 ~~~~~l~------~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlL  220 (582)
T KOG0062|consen  147 ALQSVLE------SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLL  220 (582)
T ss_pred             HHhhhhh------ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEE
Confidence              00000      00011112221111111112233333 777888873   5678899999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHH
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~  252 (255)
                      ||||||+.||..+..-+.+.|.
T Consensus       221 LLDEPTNhLDv~av~WLe~yL~  242 (582)
T KOG0062|consen  221 LLDEPTNHLDVVAVAWLENYLQ  242 (582)
T ss_pred             eecCCcccchhHHHHHHHHHHh
Confidence            9999999999998888777664

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.84  E-value=9.9e-22  Score=179.02  Aligned_cols=166  Identities=13%  Similarity=0.030  Sum_probs=103.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc---cCCCCCCCCCeE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVKPPDVA  152 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~---~~~~~~~~~~~g  152 (255)
                      .-+.++|+++.|.+  ..  +++|+.|++.+|+.+||+|+|||||||+|++|.|-..   |..-.   ++......+...
T Consensus        74 ~dvk~~sls~s~~g--~~--l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~p~~~d~y~ls~e~~ps~~  146 (614)
T KOG0927|consen   74 RDVKIESLSLSFHG--VE--LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PIPEHIDFYLLSREIEPSEK  146 (614)
T ss_pred             ccceeeeeeeccCC--ce--eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CCCcccchhhhcccCCCchH
Confidence            35889999999988  33  5599999999999999999999999999999999875   53221   111110011100


Q ss_pred             EEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccH-------------------HHHHHHHHhhccc---CCccCCCC
Q 025293          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNP-------------------LLLLNCLKNLRNQ---GSVYAPSF  209 (255)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~-------------------~~~~~~l~~l~~~---~~~~~~~l  209 (255)
                      ..+.. .....   .......+...+.+... ++...                   .....++-.+++.   ..+++..|
T Consensus       147 ~av~~-v~~~~---~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~  222 (614)
T KOG0927|consen  147 QAVQA-VVMET---DHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDL  222 (614)
T ss_pred             HHHHH-Hhhhh---HHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhcc
Confidence            00000 00000   00000001111111100 11111                   1122233333333   45778899


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      |||++.|+++|++|...|++|+|||||++||.....-+-+.+.
T Consensus       223 SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~  265 (614)
T KOG0927|consen  223 SGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA  265 (614)
T ss_pred             CchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888877764

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=4.2e-21  Score=170.59  Aligned_cols=160  Identities=15%  Similarity=0.114  Sum_probs=107.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------  148 (255)
                      .+.++|+++.|+.. +++  |+++||+++.|+.++|+|++|+||||++++|..++.   +++|. ..+++.. .      
T Consensus       262 ~v~F~~V~F~y~~~-r~i--L~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl  335 (497)
T COG5265         262 AVAFINVSFAYDPR-RPI--LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL  335 (497)
T ss_pred             eEEEEEEEeecccc-chh--hcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence            47789999999873 344  599999999999999999999999999999999997   77775 2333211 0      


Q ss_pred             -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc---------CCcc----CCCCCccc
Q 025293          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV  213 (255)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~  213 (255)
                       ..+|. +.++-..+.          .....+..+ ..+...++.....+...+.         .+..    .-.+||||
T Consensus       336 R~aIg~-VPQDtvLFN----------Dti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSgge  404 (497)
T COG5265         336 RRAIGI-VPQDTVLFN----------DTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGE  404 (497)
T ss_pred             HHHhCc-Ccccceehh----------hhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCch
Confidence             11222 222211100          001111111 1112222333333322221         1222    23689999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||++..+|+||++||.|+.||....+++...+++
T Consensus       405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~  444 (497)
T COG5265         405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE  444 (497)
T ss_pred             HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHH
Confidence            9999999999999999999999999999999888887765

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.83  E-value=4.8e-21  Score=169.13  Aligned_cols=163  Identities=17%  Similarity=0.171  Sum_probs=112.2

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      .-||++|+.+.|....   +-+..||++|++||++-|+|.||||||||+++|.|+.+   |++|+ .++++...++.-. 
T Consensus       321 ~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~le-  393 (546)
T COG4615         321 KTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQLE-  393 (546)
T ss_pred             cceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCCHH-
Confidence            3699999999998742   34589999999999999999999999999999999997   88886 3443322111000 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC-------ccCCCCCcccccchhhhhhhccCC
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------VYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-------~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                         ++..++.   .+..+...+....+.........+...++++.+..+       ...-.||.|||+|+++..|+..+-
T Consensus       394 ---dYR~LfS---avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR  467 (546)
T COG4615         394 ---DYRKLFS---AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEER  467 (546)
T ss_pred             ---HHHHHHH---HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhC
Confidence               0000000   011111112222222111234456677777776532       233478999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHH
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      +|+++||+-+-.||..++.+.+.+
T Consensus       468 ~Ilv~DEWAADQDPaFRR~FY~~l  491 (546)
T COG4615         468 DILVLDEWAADQDPAFRREFYQVL  491 (546)
T ss_pred             CeEEeehhhccCChHHHHHHHHHH
Confidence            999999999999999998877654

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=2.6e-20  Score=160.28  Aligned_cols=163  Identities=9%  Similarity=0.079  Sum_probs=100.6

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC-c-cCCCC--CC------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ--VK------  147 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G-~-~~~~~--~~------  147 (255)
                      |.++|. +.|.+.  .+  +.+    +. ..+++|+||||||||||+++|++++.   +..| + ...+.  ..      
T Consensus         6 ~~~~~f-~~~~~~--~~--~~~----~~-~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~   72 (251)
T cd03273           6 IILDGF-KSYATR--TV--ISG----FD-PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQA   72 (251)
T ss_pred             EEEeCc-cccCcC--Ee--ecc----CC-CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCC
Confidence            567777 667551  11  112    22 56999999999999999999999996   5543 3 22111  00      


Q ss_pred             ---CCCeEEEEecCC-CC------CCCccCCcccChHHHHHhcC-C-CCCccHHHHHHHHHhhcccC-------------
Q 025293          148 ---PPDVATVLPMDG-FH------LYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG-------------  202 (255)
Q Consensus       148 ---~~~~g~~i~~~~-~~------~~~~~l~~~~~~~~~~~~~~-~-~~~~~~~~~~~~l~~l~~~~-------------  202 (255)
                         ...++. +..+. ..      ...+.+++.+++........ + ........+..+++.+++..             
T Consensus        73 ~~~~~~v~~-~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~  151 (251)
T cd03273          73 GITKASVTI-VFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRIT  151 (251)
T ss_pred             CCcEEEEEE-EEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHH
Confidence               012222 22221 00      00111233332221111100 1 11123356677788777652             


Q ss_pred             ---------CccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          203 ---------SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       203 ---------~~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                               +.++..||+||+||+++|++++    .+|+++|+|||+++||+..+..+.+++.+.
T Consensus       152 ~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~  216 (251)
T cd03273         152 KVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTH  216 (251)
T ss_pred             HHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence                     2567899999999999999987    578999999999999999999999998763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=2.3e-21  Score=162.83  Aligned_cols=157  Identities=13%  Similarity=0.110  Sum_probs=91.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      -|+++|+. .|++.  .  +++++++     +++||+||||||||||+++|.-...   .+.....     ....+.++.
T Consensus         5 ~l~l~nfk-~~~~~--~--~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~~-----~~~i~~~~~   66 (212)
T cd03274           5 KLVLENFK-SYAGE--Q--VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKMR-----QKKLSDLIH   66 (212)
T ss_pred             EEEEECcc-cCCCC--e--eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHhh-----hhhHHHHhc
Confidence            36788886 78763  3  4588887     8999999999999999999985431   0000000     001111111


Q ss_pred             cCCCCCCCccCCcccChHH--------HHHhcCCCCCccHH--HHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          157 MDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPL--LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      ...+..   .++..+....        ..+..++.......  ....+.+.+++.  .+.++..||+||+||+++|++++
T Consensus        67 ~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~  143 (212)
T cd03274          67 NSAGHP---NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA  143 (212)
T ss_pred             CCCCCC---CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence            100000   0111110000        00112221110000  001222333333  34567889999999999999996


Q ss_pred             c----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 L----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~----~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .    +|+++++|||+++||+..+..+.+++.+.
T Consensus       144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~  177 (212)
T cd03274         144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKER  177 (212)
T ss_pred             hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHH
Confidence            3    57999999999999999999999998763

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.81  E-value=4.9e-20  Score=154.91  Aligned_cols=152  Identities=13%  Similarity=0.108  Sum_probs=92.5

Q ss_pred             eEEecCchheehhhhcccccccccccccC-CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCC-------CCCC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-------SQVK  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~-~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~-------~~~~  147 (255)
                      .|+++|+. .|.+.       .+++|... +|++++|+||||||||||+++|++.+.+  +..+. ...       ....
T Consensus         5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~   74 (213)
T cd03279           5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED   74 (213)
T ss_pred             EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence            47899998 66541       45667654 5899999999999999999999965421  22222 110       0000


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHH--HHHhhcc--cCCccCCCCCcccccchhhhhhh
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNLRN--QGSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l  223 (255)
                      ...++..+ ......    ..+..       ..++    ....+..  .+....+  ..+.++..||+||+||+++|+++
T Consensus        75 ~~~v~~~f-~~~~~~----~~~~r-------~~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al  138 (213)
T cd03279          75 TAEVSFTF-QLGGKK----YRVER-------SRGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLAL  138 (213)
T ss_pred             cEEEEEEE-EECCeE----EEEEE-------ecCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence            11122211 111100    01111       0111    1111111  1111111  23567789999999999999999


Q ss_pred             cc----------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~----------~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.          +|+++|+||||++||+..+..+.+++.+.
T Consensus       139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~  179 (213)
T cd03279         139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELI  179 (213)
T ss_pred             HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            74          57899999999999999999999888653

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.81  E-value=9.1e-20  Score=183.52  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=118.8

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-C-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-K-------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~-------  147 (255)
                      -|+++|++.+|..+...  +|+||||+|++||.|||+|..|||||||++.|..+..   |.+|+ .+++-. .       
T Consensus      1138 ~I~f~~~~~RYrp~lp~--VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~dL 1212 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHDL 1212 (1381)
T ss_pred             eEEEEEeEEEeCCCCcc--hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHHH
Confidence            69999999999875334  5599999999999999999999999999999999998   88887 444421 1       


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CCc----cCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~~----~~~~lS~G~k  214 (255)
                      +...+ +|+++...+..   |+..       +..-..++.+..+.++++...+.         .+.    -...||-|||
T Consensus      1213 Rsrls-IIPQdPvLFsG---TvR~-------NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQR 1281 (1381)
T KOG0054|consen 1213 RSRLS-IIPQDPVLFSG---TVRF-------NLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQR 1281 (1381)
T ss_pred             HhcCe-eeCCCCceecC---cccc-------ccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHH
Confidence            12223 25554433221   2222       22222344455666666665543         222    2357999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |.+++||||+.+.+||+|||.|+..|++.-..+.+.|.+.
T Consensus      1282 QLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~ 1321 (1381)
T KOG0054|consen 1282 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREE 1321 (1381)
T ss_pred             HHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888777777653

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.80  E-value=1.3e-19  Score=162.55  Aligned_cols=156  Identities=15%  Similarity=0.140  Sum_probs=103.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      ..+++-.+++|.|++..     |+--.=+|..||++|++||||-|||||.++|+|.++   |++|..  .   .      
T Consensus       340 ~~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~~--~---~------  400 (591)
T COG1245         340 DTLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGSE--E---D------  400 (591)
T ss_pred             ceeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCCC--c---c------
Confidence            34677788888888632     122234577899999999999999999999999999   999941  0   0      


Q ss_pred             EecCCCCCCC---ccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcE
Q 025293          155 LPMDGFHLYL---SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       155 i~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                      +.+.+..++-   .+.++.+.   +...... .........++.+-|.+.  .+..+..|||||-|||++|.+|..++++
T Consensus       401 ~~vSyKPQyI~~~~~gtV~~~---l~~~~~~-~~~~s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADl  476 (591)
T COG1245         401 LKVSYKPQYISPDYDGTVEDL---LRSAIRS-AFGSSYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADL  476 (591)
T ss_pred             ceEeecceeecCCCCCcHHHH---HHHhhhh-hcccchhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCE
Confidence            1111111110   01122221   1111110 000111122344444443  4577899999999999999999999999


Q ss_pred             EEEcCCCCCCChhHHHHHHHHHHh
Q 025293          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .++|||.+-||.+.+..+...|..
T Consensus       477 YllDEPSA~LDvEqR~~vakvIRR  500 (591)
T COG1245         477 YLLDEPSAYLDVEQRIIVAKVIRR  500 (591)
T ss_pred             EEecCchhhccHHHHHHHHHHHHH
Confidence            999999999999988877777654

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.80  E-value=2.8e-19  Score=154.18  Aligned_cols=64  Identities=13%  Similarity=0.009  Sum_probs=54.9

Q ss_pred             HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC---CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~---~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..++++.+++.   ...++..||+||+||+++|++|+.+   |+++|+||||++||+..+..+.++|.+.
T Consensus       149 ~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l  218 (261)
T cd03271         149 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL  218 (261)
T ss_pred             HHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            34566667765   3577889999999999999999986   7999999999999999999999998753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.78  E-value=5.7e-19  Score=147.48  Aligned_cols=133  Identities=11%  Similarity=-0.002  Sum_probs=81.2

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHH----HHhcccCCCCCcc------CCCCCCCCCeEEEEecCCCCCCCccCCccc
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKASS------FDSQVKPPDVATVLPMDGFHLYLSQLDAME  171 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~----Gll~~~~p~~G~~------~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~  171 (255)
                      +++.+| +++|+||||||||||+++|.    |...   |++|..      +........++..+.......    +.+..
T Consensus        18 l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~----~~v~r   89 (204)
T cd03240          18 IEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKLAFENANGKK----YTITR   89 (204)
T ss_pred             EecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEEEEEeCCCCE----EEEEE
Confidence            445567 99999999999999999996    5543   555531      111111112232222110110    11111


Q ss_pred             ChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccc------hhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293          172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (255)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqr------v~la~~l~~~~~illlDep~~~LD~~~~~  245 (255)
                      ........ .+..   .......+       +..+..||+||+||      ++++++++.+|+++|+|||+++||+..+.
T Consensus        90 ~~~~~~~~-~~~~---~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~  158 (204)
T cd03240          90 SLAILENV-IFCH---QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIE  158 (204)
T ss_pred             EhhHhhce-eeec---hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHH
Confidence            11111111 0000   11111111       55678999999996      68899999999999999999999999999


Q ss_pred             -HHHHHHHh
Q 025293          246 -DVSSMFDE  253 (255)
Q Consensus       246 -~l~~ll~~  253 (255)
                       .+.+++.+
T Consensus       159 ~~l~~~l~~  167 (204)
T cd03240         159 ESLAEIIEE  167 (204)
T ss_pred             HHHHHHHHH
Confidence             99998865

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.77  E-value=8.7e-19  Score=161.02  Aligned_cols=171  Identities=12%  Similarity=-0.006  Sum_probs=114.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      .++|++++|+..-.++ ..+ +++|+||+|++|+-+.|.||||||||+|+|+|+|+-+   -.+|+ ....+- .+  ..
T Consensus       431 Dn~i~~e~v~l~tPt~-g~~-lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp---~~~G~l~k~~~~-~~--~~  502 (659)
T KOG0060|consen  431 DNAIEFEEVSLSTPTN-GDL-LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWP---STGGKLTKPTDG-GP--KD  502 (659)
T ss_pred             cceEEeeeeeecCCCC-Cce-eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccc---cCCCeEEecccC-CC--Cc
Confidence            3689999999988774 222 4599999999999999999999999999999999873   26665 211110 00  11


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhccc--------C-----CccCCCCCcccccchhh
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--------G-----SVYAPSFDHGVGDPVED  219 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~--------~-----~~~~~~lS~G~kqrv~l  219 (255)
                      ++.++..+.... -+..+.+.+.... .........+.+...++++.+.        .     ..+..+||+||+||+++
T Consensus       503 lfflPQrPYmt~-GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~  581 (659)
T KOG0060|consen  503 LFFLPQRPYMTL-GTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAF  581 (659)
T ss_pred             eEEecCCCCccc-cchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHH
Confidence            122222111100 0111111111000 0011223445667777777764        1     23456899999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||.+..+|++-||||-|+.+|+.....+...+++.
T Consensus       582 ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~  616 (659)
T KOG0060|consen  582 ARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM  616 (659)
T ss_pred             HHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc
Confidence            99999999999999999999999999998888763

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.77  E-value=5.7e-19  Score=140.73  Aligned_cols=153  Identities=20%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      .++.++||...-        -|-.+|.++..||++-+||||||||||||-.++|++    |.+|+              |
T Consensus         2 ~l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGs--------------i   55 (248)
T COG4138           2 ILMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGS--------------I   55 (248)
T ss_pred             ceeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCce--------------E
Confidence            367788886532        226788999999999999999999999999999998    77775              3


Q ss_pred             ecCCCCCCCccCCcc----------cChHHHH---HhcCC--CCCccHHHHHHHHHhhcccC--CccCCCCCcccccchh
Q 025293          156 PMDGFHLYLSQLDAM----------EDPKEAH---ARRGA--PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVE  218 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~----------~~~~~~~---~~~~~--~~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~kqrv~  218 (255)
                      .++|...........          ..+.+..   .+..+  |.......+..+.+.+.+..  .+.++.|||||=|||.
T Consensus        56 ~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVR  135 (248)
T COG4138          56 QFAGQPLEAWSATELARHRAYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVR  135 (248)
T ss_pred             EECCcchhHHhHhHHHHHHHHHhhccCCcchhhhhhhhhhcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeE
Confidence            333332211000000          0000000   01111  11111223344555555553  4567899999999999


Q ss_pred             hhhhhc-------cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          219 DDILVG-------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       219 la~~l~-------~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|....       ...++||+|||.++||...+..+..++.+.
T Consensus       136 LAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~  178 (248)
T COG4138         136 LAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSAL  178 (248)
T ss_pred             EeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHH
Confidence            887653       245899999999999998888887777654

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.77  E-value=2.4e-18  Score=143.07  Aligned_cols=136  Identities=13%  Similarity=0.130  Sum_probs=86.1

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC---CCC--CCCeEE-EEecCCCCCCCccCCcc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS---QVK--PPDVAT-VLPMDGFHLYLSQLDAM  170 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~---~~~--~~~~g~-~i~~~~~~~~~~~l~~~  170 (255)
                      +++++++.+| +.+|+||||||||||+..|...+.   ..... ..+.   ...  ....+. .+.+.....     .  
T Consensus        13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~-----~--   81 (198)
T cd03276          13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKITVTLKNQGL-----D--   81 (198)
T ss_pred             eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEEEEEEcCCc-----c--
Confidence            5667777777 889999999999999999986653   22110 0010   000  000111 011111100     0  


Q ss_pred             cChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh----ccCCcEEEEcCCCCCCChhHHHH
Q 025293          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKD  246 (255)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l----~~~~~illlDep~~~LD~~~~~~  246 (255)
                      .+         .........+.++++. .-..+.++..||+||+||+++|+++    +.+|+++|+|||+++||+..+..
T Consensus        82 ~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~  151 (198)
T cd03276          82 AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKI  151 (198)
T ss_pred             CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHH
Confidence            00         0001112234455554 3335677889999999999999999    58999999999999999999999


Q ss_pred             HHHHHHhh
Q 025293          247 VSSMFDEK  254 (255)
Q Consensus       247 l~~ll~~~  254 (255)
                      +.++|.+.
T Consensus       152 ~~~~l~~~  159 (198)
T cd03276         152 STDLLVKE  159 (198)
T ss_pred             HHHHHHHH
Confidence            99988653

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=1.2e-18  Score=175.45  Aligned_cols=155  Identities=14%  Similarity=0.129  Sum_probs=114.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      ...++++|.+++.+... +...|+||||+|++|+.+||+|+-|||||+||..|.|.++   ..+|+ .+.+.     .++
T Consensus       516 ~~~i~i~~~sfsW~~~~-~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----iaY  586 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSES-PEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VAY  586 (1381)
T ss_pred             CceEEEeeeeEecCCCC-CcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EEE
Confidence            45799999999987621 2225699999999999999999999999999999999997   77776 22221     333


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC-------------ccCCCCCcccccchhhh
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-------------~~~~~lS~G~kqrv~la  220 (255)
                       +.+...-+.   -++.+       ++-+...++.++..++++...+..+             .+.-.||||||||+++|
T Consensus       587 -v~Q~pWI~n---gTvre-------NILFG~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA  655 (1381)
T KOG0054|consen  587 -VPQQPWIQN---GTVRE-------NILFGSPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA  655 (1381)
T ss_pred             -eccccHhhC---CcHHH-------hhhcCccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence             333332221   13333       3333455666777777776655421             23447999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      ||+-.+++|+|||-|++.+|...-.++.+
T Consensus       656 RAVY~~adIYLLDDplSAVDahvg~~if~  684 (1381)
T KOG0054|consen  656 RAVYQDADIYLLDDPLSAVDAHVGKHIFE  684 (1381)
T ss_pred             HHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence            99999999999999999999988777665

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.76  E-value=2.6e-18  Score=140.26  Aligned_cols=172  Identities=15%  Similarity=0.064  Sum_probs=113.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCCCCC----C
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQVKP----P  149 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~~~~----~  149 (255)
                      -.|++.++.+.|... .+++  -|+|++++.|....++|.||||||||||+|+|-.-   -..|.  +.+.+...    .
T Consensus        12 ~aievsgl~f~y~~~-dP~~--~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~   85 (291)
T KOG2355|consen   12 FAIEVSGLQFKYKVS-DPIF--FDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLE   85 (291)
T ss_pred             ceEEEeccEEecccC-CceE--EEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcccccccc
Confidence            479999999999764 3554  89999999999999999999999999999999652   11222  11111111    1


Q ss_pred             CeEEEEecCCCCCCC----ccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhcc
Q 025293          150 DVATVLPMDGFHLYL----SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ..|.....++.-...    .+.+...+.....-.+++..+ +..+-..+++.+.+...-+.+..|-|||+||.|++.|..
T Consensus        86 ~Sgdl~YLGgeW~~~~~~agevplq~D~sae~mifgV~g~-dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~  164 (291)
T KOG2355|consen   86 SSGDLSYLGGEWSKTVGIAGEVPLQGDISAEHMIFGVGGD-DPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLK  164 (291)
T ss_pred             ccCceeEecccccccccccccccccccccHHHHHhhccCC-ChhHhhhhhhheeccceEEEeeccccchhhhHHHHhccc
Confidence            122211111110000    000111111111222333111 113334556666666777788999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .-++|+|||.|.-||...+..+.+++++-
T Consensus       165 PfkVLLLDEVTVDLDVlARadLLeFlkeE  193 (291)
T KOG2355|consen  165 PFKVLLLDEVTVDLDVLARADLLEFLKEE  193 (291)
T ss_pred             ceeEEEeeeeEeehHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999764

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.75  E-value=1.4e-18  Score=149.19  Aligned_cols=49  Identities=16%  Similarity=0.158  Sum_probs=44.5

Q ss_pred             CCCCCcccccchhhhhhhccC----CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          206 APSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~~~----~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +..||+||+||+++|++++.+    |+++|+|||+++||+..+..+.++|.+.
T Consensus       153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~  205 (247)
T cd03275         153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQ  205 (247)
T ss_pred             HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHh
Confidence            478999999999999999764    8999999999999999999999988754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.74  E-value=4.8e-18  Score=139.24  Aligned_cols=176  Identities=16%  Similarity=0.236  Sum_probs=117.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCC-CC----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQ-VK----  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~-~~----  147 (255)
                      |+.+.+.||+..+.....++.+++++|+++.+||+-|++|.+|||||-..|.|+|..+..|--...  .|+.- ..    
T Consensus         1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence            567889999998876656677889999999999999999999999999999999988533322221  12210 00    


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHH-HHhc-CCC-C----------CccHHHHHHHHHhhcccC-----CccC
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARR-GAP-W----------TFNPLLLLNCLKNLRNQG-----SVYA  206 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~-~~~~-~~~-~----------~~~~~~~~~~l~~l~~~~-----~~~~  206 (255)
                         +.-+|..+.+-..    ...+..+..+.. +..+ .++ .          .+...+..+++..+++..     ..|+
T Consensus        81 r~RRk~ig~~isMIFQ----eP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP  156 (330)
T COG4170          81 RERRKLVGHNVSMIFQ----EPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP  156 (330)
T ss_pred             HHhhhhhccchhhhhc----CchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence               0112222211100    001111111111 1111 111 0          112234566777777753     3567


Q ss_pred             CCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       207 ~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|.-||.|+|+||.|++.+|++||.||||+.+|+..+.++..++..+
T Consensus       157 ~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~m  204 (330)
T COG4170         157 YELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRL  204 (330)
T ss_pred             chhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHh
Confidence            789999999999999999999999999999999999999999888653

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.74  E-value=3.2e-18  Score=169.58  Aligned_cols=172  Identities=12%  Similarity=0.008  Sum_probs=122.2

Q ss_pred             eEEecCchhee--hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-----CC
Q 025293           77 VVEARCMDEVY--DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP  148 (255)
Q Consensus        77 ~l~v~~lsk~y--~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-----~~  148 (255)
                      +.-..|+.+.-  .+.+++  +|+||+=-+++|..+||+|+|||||||||++|+|-.... -.+|. .+++..     ..
T Consensus       787 V~~w~dl~~~~~~qG~~~q--LL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G-~I~Gdi~i~G~p~~q~tF~  863 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQ--LLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGG-YIEGDILISGFPKDQETFA  863 (1391)
T ss_pred             eEEEEeCCccccccccceE--hhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccc-eEEeEEEECCeeCchhhhc
Confidence            34445554443  122234  459999999999999999999999999999999974210 12233 233321     23


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCC---CCCccHHHHHHHHHhhccc--CCccCC----CCCcccccchhh
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVED  219 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~l~~~--~~~~~~----~lS~G~kqrv~l  219 (255)
                      ...|+ +.+++.+..  ++|+.|.+.+....+-.   +.......+.++++.+++.  .+.-+.    -||.+||+|+.|
T Consensus       864 R~~GY-vqQ~DiH~~--~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTI  940 (1391)
T KOG0065|consen  864 RVSGY-VEQQDIHSP--ELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTI  940 (1391)
T ss_pred             cccce-eecccccCc--ccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeE
Confidence            45676 677766654  47898888776655432   1122223457888888877  333344    499999999999


Q ss_pred             hhhhccCC-cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~-~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |--|+.+| -||+|||||+|||..+...++++++++
T Consensus       941 gVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkl  976 (1391)
T KOG0065|consen  941 GVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKL  976 (1391)
T ss_pred             EEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHH
Confidence            99999999 999999999999999998999888764

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.69  E-value=1.2e-16  Score=158.21  Aligned_cols=64  Identities=13%  Similarity=0.014  Sum_probs=55.9

Q ss_pred             HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+.++.+++.   ....+..||+||+||+.+|++|+.+|   +++||||||++||+..+..+.++|++.
T Consensus       810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l  879 (943)
T PRK00349        810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRL  879 (943)
T ss_pred             HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            34567777775   35678899999999999999999999   999999999999999999999998753

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.69  E-value=8.7e-17  Score=148.04  Aligned_cols=166  Identities=21%  Similarity=0.229  Sum_probs=115.1

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCC--
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD--  150 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~--  150 (255)
                      +.++++++|++..-        .++|+||++.+|||+||.|-=|||+|-|++.|.|..+   +.+|+ .+++......  
T Consensus       260 ~~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp  328 (500)
T COG1129         260 GEPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSP  328 (500)
T ss_pred             CCcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCH
Confidence            35678899987432        2389999999999999999999999999999999886   78888 5555432111  


Q ss_pred             -------eEEEEecC----CCCCCCccCCcccChHHH--HHhc--CC-CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293          151 -------VATVLPMD----GFHLYLSQLDAMEDPKEA--HARR--GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       151 -------~g~~i~~~----~~~~~~~~l~~~~~~~~~--~~~~--~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~  211 (255)
                             .++ +.-|    |..+   .+++.+|....  ....  .+ .............+.+.+.   .+..+..|||
T Consensus       329 ~~Ai~~Gi~~-v~EDRk~~Gl~l---~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSG  404 (500)
T COG1129         329 RDAIKAGIAY-VPEDRKSEGLVL---DMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSG  404 (500)
T ss_pred             HHHHHcCCEe-CCcccccCcCcC---CCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCc
Confidence                   222 2211    1111   12333443332  1111  01 1111122334555556554   3467889999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |.+|||.+|++|..+|++||+||||-|.|.-.+.++.++|.+.
T Consensus       405 GNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~l  447 (500)
T COG1129         405 GNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIREL  447 (500)
T ss_pred             hhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999764

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.69  E-value=6.1e-17  Score=147.21  Aligned_cols=161  Identities=14%  Similarity=0.059  Sum_probs=116.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      .+.+++.+|++.|.....  ..+.++++.++--..++++|+||+||||++|++.|.+.   |..|. ...        +.
T Consensus       360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~--------~r  426 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRH--------PR  426 (582)
T ss_pred             CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeec--------cc
Confidence            468999999999976432  24599999999999999999999999999999999887   78774 111        11


Q ss_pred             EEecCCCCCCCc-cCCccc-ChHHHHHhcCCCCCccHHHHHHHHHhhcccCC---ccCCCCCcccccchhhhhhhccCCc
Q 025293          154 VLPMDGFHLYLS-QLDAME-DPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       154 ~i~~~~~~~~~~-~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~---~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                       ..+.++.++.- .++... .+.+....   .+....+.+..-+..|++..+   ..+..||||||-||++|.....+|.
T Consensus       427 -~ri~~f~Qhhvd~l~~~v~~vd~~~~~---~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph  502 (582)
T KOG0062|consen  427 -LRIKYFAQHHVDFLDKNVNAVDFMEKS---FPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH  502 (582)
T ss_pred             -ceecchhHhhhhHHHHHhHHHHHHHHh---CCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence             23333333220 011100 11111111   122245677888888988743   3467899999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHH
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      +|+|||||+.||..+-..+...|.
T Consensus       503 lLVLDEPTNhLD~dsl~AL~~Al~  526 (582)
T KOG0062|consen  503 LLVLDEPTNHLDRDSLGALAKALK  526 (582)
T ss_pred             EEEecCCCccccHHHHHHHHHHHH
Confidence            999999999999998888877664

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.67  E-value=1.4e-16  Score=157.52  Aligned_cols=64  Identities=13%  Similarity=0.008  Sum_probs=54.9

Q ss_pred             HHHHHHhhccc---CCccCCCCCcccccchhhhhhhcc---CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~---~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..++++.+++.   ....+..||+||+||+.+|++|+.   +|+++||||||++||+..+..+.++|.+.
T Consensus       808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l  877 (924)
T TIGR00630       808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRL  877 (924)
T ss_pred             HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            34566677765   356788999999999999999986   58999999999999999999999998764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.66  E-value=4.8e-16  Score=160.53  Aligned_cols=62  Identities=11%  Similarity=-0.049  Sum_probs=54.4

Q ss_pred             HHHHhhccc---CCccCCCCCcccccchhhhhhhc---cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~---~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++++.+++.   .+..+..||+||+||+++|++|+   .+|+++||||||++||+..+..+.++|++.
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L  858 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSL  858 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            566777775   35678899999999999999997   699999999999999999999999999764

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.62  E-value=5.6e-16  Score=129.00  Aligned_cols=113  Identities=12%  Similarity=0.093  Sum_probs=73.6

Q ss_pred             cccccccCCCc-EEEEECCCCCcHHHHHHHHH-HHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           98 SALASNVNVKH-IVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        98 ~~isl~i~~Ge-ivgLiGpNGsGKSTLLk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      .++||++.+|+ +++|+||||||||||||+|+ +.+.   +..|-.      .+. ...+.+.++.              
T Consensus        18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~~~G~~------vp~-~~~~~~~~~~--------------   73 (200)
T cd03280          18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---AQSGLP------IPA-AEGSSLPVFE--------------   73 (200)
T ss_pred             EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---HHcCCC------ccc-cccccCcCcc--------------
Confidence            57899999995 79999999999999999998 3321   222210      000 0000010000              


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH-HHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS-MFD  252 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~-ll~  252 (255)
                              +.+.         .++.  ........||+||+|++.++.++ .+|+++|+|||+.++|+..+..+.. ++.
T Consensus        74 --------~~~~---------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~  135 (200)
T cd03280          74 --------NIFA---------DIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILE  135 (200)
T ss_pred             --------EEEE---------ecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence                    0000         0000  12234578999999999988775 6999999999999999998887753 443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.61  E-value=5.4e-16  Score=141.43  Aligned_cols=160  Identities=14%  Similarity=0.074  Sum_probs=102.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEe
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (255)
                      |.++|+-..-...  .+ ++..++|.|++|-.+.|+||||||||+|+|+|.|+-+   -..|. ...    ++..-.+++
T Consensus       482 I~lenIpvItP~~--~v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWP---vy~g~L~~P----~~~~mFYIP  551 (728)
T KOG0064|consen  482 IILENIPVITPAG--DV-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWP---VYNGLLSIP----RPNNIFYIP  551 (728)
T ss_pred             eEEecCceeccCc--ce-eecceeEEecCCceEEEECCCCccHHHHHHHHhccCc---ccCCeeecC----CCcceEecc
Confidence            6778887777653  23 4599999999999999999999999999999999873   23343 211    112111122


Q ss_pred             cCCCCCCCccCC---cccChHHHHHhcCCCCCccHHHHHHHHHhhccc-----------CCccCCCCCcccccchhhhhh
Q 025293          157 MDGFHLYLSQLD---AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       157 ~~~~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------~~~~~~~lS~G~kqrv~la~~  222 (255)
                      +-.|.- ...+.   ...+...-....|+.    ...+..+++.+.+.           ..-+-..||||+|||+++||.
T Consensus       552 QRPYms-~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm  626 (728)
T KOG0064|consen  552 QRPYMS-GGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM  626 (728)
T ss_pred             CCCccC-cCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence            211110 00000   001111112223332    33445555555443           122345789999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      +-+.|+..+|||-|+..-+.....+.+..+
T Consensus       627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak  656 (728)
T KOG0064|consen  627 FYHRPKYALLDECTSAVSIDVEGKIFQAAK  656 (728)
T ss_pred             HhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence            999999999999999988877777777654

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.61  E-value=1.6e-15  Score=135.19  Aligned_cols=146  Identities=16%  Similarity=0.115  Sum_probs=98.0

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhccc-----CCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-----WPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDA  169 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~-----~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~  169 (255)
                      +++|+||+|++|++++|+|+|||||||||++|+|.....     .|++|. .+..+    +..  ..+.+..-+  .++ 
T Consensus       398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~n----t~~--a~iPge~Ep--~f~-  468 (593)
T COG2401         398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKN----TVS--ALIPGEYEP--EFG-  468 (593)
T ss_pred             eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceecccc----chh--hccCccccc--ccC-
Confidence            569999999999999999999999999999999987421     134443 11100    001  111221100  011 


Q ss_pred             ccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293          170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (255)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~  245 (255)
                        ...........  .-+......++...++.    -......||-|||.|+.||.+++..|.+++.||-.+.||+.+..
T Consensus       469 --~~tilehl~s~--tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~TA~  544 (593)
T COG2401         469 --EVTILEHLRSK--TGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAV  544 (593)
T ss_pred             --chhHHHHHhhc--cCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHHHH
Confidence              11122222221  12333456777777765    23556789999999999999999999999999999999999888


Q ss_pred             HHHHHHHhh
Q 025293          246 DVSSMFDEK  254 (255)
Q Consensus       246 ~l~~ll~~~  254 (255)
                      .+..-|.+.
T Consensus       545 rVArkisel  553 (593)
T COG2401         545 RVARKISEL  553 (593)
T ss_pred             HHHHHHHHH
Confidence            877666543

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.60  E-value=7e-16  Score=138.75  Aligned_cols=161  Identities=19%  Similarity=0.186  Sum_probs=98.7

Q ss_pred             Cchheehhhhccccccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE-----
Q 025293           82 CMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-----  155 (255)
Q Consensus        82 ~lsk~y~~~~~~il~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i-----  155 (255)
                      ++..+|+.+..++.     .+ ...+|.++||+|+||-||||-+|+|+|.+.   |.=|..-+    +|.+-.++     
T Consensus        79 e~vHRYg~NgFkL~-----~LP~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrG  146 (591)
T COG1245          79 EVVHRYGVNGFKLY-----RLPTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRG  146 (591)
T ss_pred             cceeeccCCceEEe-----cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhh
Confidence            35677876432221     22 246799999999999999999999999997   87774221    12211111     


Q ss_pred             --ecCCCC-CCCccCCcccCh---HHHHHh-cC----C-CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          156 --PMDGFH-LYLSQLDAMEDP---KEAHAR-RG----A-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       156 --~~~~~~-~~~~~l~~~~~~---~~~~~~-~~----~-~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                        .+++|. +...++.+...+   ..+.+. .|    + ..........++.+.+++.  .++.+..|||||-||++||.
T Consensus       147 tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa  226 (591)
T COG1245         147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA  226 (591)
T ss_pred             hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence              011110 000001111111   111110 00    0 0000001234555555554  57789999999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++..+++++++|||++-||...+..+..++.+.
T Consensus       227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel  259 (591)
T COG1245         227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIREL  259 (591)
T ss_pred             HHhccCCEEEEcCCcccccHHHHHHHHHHHHHH
Confidence            999999999999999999999998888888764

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.57  E-value=3.7e-15  Score=121.87  Aligned_cols=49  Identities=16%  Similarity=0.112  Sum_probs=43.8

Q ss_pred             CCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          206 APSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.||+||+||+++|++++    .+|+++|+|||+++||+..+..+.+++.+.
T Consensus        92 ~~~LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~  144 (178)
T cd03239          92 EQILSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEM  144 (178)
T ss_pred             cccCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            3449999999999999985    689999999999999999999999988753

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.57  E-value=1.5e-14  Score=121.56  Aligned_cols=51  Identities=16%  Similarity=-0.029  Sum_probs=43.7

Q ss_pred             CccCCCCCcccccchhhhhhh----ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la~~l----~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ...+..||+||+|++.++.++    +.+|+++|+|||+++||+..+..+.+++.+
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~  175 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVE  175 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            456679999999998766543    579999999999999999999999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.54  E-value=1.4e-14  Score=116.66  Aligned_cols=109  Identities=15%  Similarity=0.127  Sum_probs=71.9

Q ss_pred             cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHh
Q 025293          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (255)
Q Consensus       100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~  179 (255)
                      .++.+.++.++.|+|||||||||+++.+...+-   ...|..        ..+..+. .+....     . ....+    
T Consensus        14 ~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~--------~~~~~~~-~g~~~~-----~-~~~~~----   71 (162)
T cd03227          14 NDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSAT--------RRRSGVK-AGCIVA-----A-VSAEL----   71 (162)
T ss_pred             cEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhh--------hccCccc-CCCcce-----e-eEEEE----
Confidence            344455667999999999999999999877763   222210        0000000 010000     0 00000    


Q ss_pred             cCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                                             -.....+|+||++|+.+++++..    +|+++|+|||+.++|+..+..+.+.+.+
T Consensus        72 -----------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~  126 (162)
T cd03227          72 -----------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE  126 (162)
T ss_pred             -----------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence                                   00012399999999999999976    7899999999999999999998887764

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.54  E-value=6e-15  Score=122.74  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=29.8

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+++..  |++++|+||||||||||+|+|+|..
T Consensus        16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            348877665  7999999999999999999999976

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=1.4e-14  Score=129.93  Aligned_cols=154  Identities=18%  Similarity=0.100  Sum_probs=95.9

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      -|.++|.+.+..+  +.  .+.|.|+.|-.|..+||+||||-||||||+.|+.--- .+|            +.+-..++
T Consensus       264 DIKiEnF~ISA~G--k~--LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Ral-aIP------------pnIDvLlC  326 (807)
T KOG0066|consen  264 DIKIENFDISAQG--KL--LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARAL-AIP------------PNIDVLLC  326 (807)
T ss_pred             cceeeeeeeeccc--ce--eeeccceEEEecceecccCCCCCchHHHHHHHHhhhc-cCC------------CCCceEee
Confidence            3788888888766  33  4499999999999999999999999999999987431 012            11111111


Q ss_pred             cCCCCCCC------------------------------ccCCcccChH-HHHHhcCCCCCccHHHHHHHHHhhccc---C
Q 025293          157 MDGFHLYL------------------------------SQLDAMEDPK-EAHARRGAPWTFNPLLLLNCLKNLRNQ---G  202 (255)
Q Consensus       157 ~~~~~~~~------------------------------~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~l~~~---~  202 (255)
                      -.......                              ...++.+.+. .....+.+.......+.+.++.-++|.   .
T Consensus       327 EQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ  406 (807)
T KOG0066|consen  327 EQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ  406 (807)
T ss_pred             eeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh
Confidence            10000000                              0000000000 000111111112223445566666665   3


Q ss_pred             CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH
Q 025293          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l  247 (255)
                      +++...||||-|.||.+||||...|.+|.|||||..||--..-.+
T Consensus       407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWL  451 (807)
T KOG0066|consen  407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWL  451 (807)
T ss_pred             cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeeh
Confidence            567778999999999999999999999999999999997544333

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.52  E-value=2.1e-14  Score=119.63  Aligned_cols=110  Identities=15%  Similarity=0.073  Sum_probs=64.6

Q ss_pred             cccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHh
Q 025293          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (255)
Q Consensus       100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~  179 (255)
                      .++++..|++++|+|||||||||||++|++..-  .+..|.+..        +....+..+...   ++          .
T Consensus        22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~--~~~~g~~~~--------~~~~~i~~~dqi---~~----------~   78 (202)
T cd03243          22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVL--LAQIGCFVP--------AESASIPLVDRI---FT----------R   78 (202)
T ss_pred             eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHH--HHHcCCCcc--------ccccccCCcCEE---EE----------E
Confidence            356666899999999999999999999996541  022221000        000000000000   00          0


Q ss_pred             cCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       180 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      ++..                .........|+.+++| +..+..++.+|+++|+|||+.++|+.....+..
T Consensus        79 ~~~~----------------d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~  131 (202)
T cd03243          79 IGAE----------------DSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY  131 (202)
T ss_pred             ecCc----------------ccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence            0000                0011223456666665 655667778999999999999999988776643

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.49  E-value=1.2e-13  Score=125.66  Aligned_cols=173  Identities=16%  Similarity=0.129  Sum_probs=116.2

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----C
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P  148 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----~  148 (255)
                      +.+++++++|+..-...   +..+++|||+|..|||+||.|-.|-|-+.|+..|+|+.+   |.+|+ .+++...    .
T Consensus       254 g~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~  327 (501)
T COG3845         254 GEVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLS  327 (501)
T ss_pred             CCeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCC
Confidence            35799999999776542   336799999999999999999999999999999999997   77787 4444321    0


Q ss_pred             C------CeEEEEecCCCC-CCCccCCcccChHHHHHhc------CC-CCCccHHHHHHHHHhhccc---CCccCCCCCc
Q 025293          149 P------DVATVLPMDGFH-LYLSQLDAMEDPKEAHARR------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (255)
Q Consensus       149 ~------~~g~~i~~~~~~-~~~~~l~~~~~~~~~~~~~------~~-~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~  211 (255)
                      +      ..++ +.-+-.. ---.+++..+|........      ++ ..........++++.+...   ...+...|||
T Consensus       328 ~~~~r~~G~~~-VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSG  406 (501)
T COG3845         328 PRERRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSG  406 (501)
T ss_pred             HHHHHhcCCcc-CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCC
Confidence            0      1121 1111000 0001123333332221111      10 0001112235566666654   3456779999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |.+||+-+||-|..+|++||+..||-|||....+.+.+.|.+
T Consensus       407 GNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e  448 (501)
T COG3845         407 GNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLE  448 (501)
T ss_pred             cceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998888887654

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.46  E-value=3.2e-14  Score=118.74  Aligned_cols=110  Identities=12%  Similarity=0.045  Sum_probs=72.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +.+|++|++..|++++|+||||+||||++++|+++.-               -...|..+  ....   ..++..+    
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~v--pa~~---~~l~~~d----   73 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFV--PAEY---ATLPIFN----   73 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCc--chhh---cCccChh----
Confidence            4599999999999999999999999999999998762               11112111  0000   0011110    


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l  247 (255)
                                       .++..++..  .....+.||.|+++. ..+..++.+++++|+|||+.++|+.....+
T Consensus        74 -----------------~I~~~~~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~gt~~~~~~~l  129 (204)
T cd03282          74 -----------------RLLSRLSNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGRGTSSADGFAI  129 (204)
T ss_pred             -----------------heeEecCCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCCCCHHHHHHH
Confidence                             111122222  234556889999965 455667789999999999999999754443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.46  E-value=3.3e-14  Score=120.20  Aligned_cols=110  Identities=14%  Similarity=0.089  Sum_probs=74.6

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +.+|+++++.++++++|.||||+|||||+++++-..-                      ...-|.+.+.     ..    
T Consensus        19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~g~~vpa-----~~----   67 (222)
T cd03285          19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----------------------MAQIGCFVPC-----DS----   67 (222)
T ss_pred             EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----------------------HHHhCCCcCc-----cc----
Confidence            4499999999999999999999999999999874321                      1111211110     00    


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh--ccCCcEEEEcCC---CCCCChhHHHHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVWKDV  247 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l--~~~~~illlDep---~~~LD~~~~~~l  247 (255)
                        ...+        ....++..+++... ....+|.|+++++.+++++  +.+|+++|+|||   |+++|+......
T Consensus        68 --~~~~--------~~~~il~~~~l~d~-~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~~  133 (222)
T cd03285          68 --ADIP--------IVDCILARVGASDS-QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAWA  133 (222)
T ss_pred             --EEEe--------ccceeEeeeccccc-hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHHH
Confidence              0000        01122233333322 2567899999999999998  889999999999   888998776543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.45  E-value=1.4e-13  Score=120.20  Aligned_cols=47  Identities=17%  Similarity=0.018  Sum_probs=42.2

Q ss_pred             CCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       208 ~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .||+||+||+++|++++.    .|+++|+|||+++||+..+..+.+++.+.
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~  220 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKEL  220 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            489999999999986543    99999999999999999999999988753

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.44  E-value=2.4e-13  Score=114.80  Aligned_cols=130  Identities=26%  Similarity=0.375  Sum_probs=90.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  188 (255)
                      ++||.|+||||||||++.|.+++.   +..+        ...+. ++.+++|+.....+   .... .....+++..++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~---~~~~--------~~~v~-vi~~D~f~~~~~~~---~~~~-~~~~~g~p~~~d~   64 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS---RWPD--------HPNVE-LITTDGFLYPNKEL---IERG-LMDRKGFPESYDM   64 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh---hcCC--------CCcEE-EEecCcccCcHHHH---HHhh-hhhcCCCcccCCH
Confidence            589999999999999999999984   2111        12233 47888886432111   1000 1123456677777


Q ss_pred             HHHHHHHHhhcc-cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh-hHHHHHHHHHHhh
Q 025293          189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDEK  254 (255)
Q Consensus       189 ~~~~~~l~~l~~-~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~-~~~~~l~~ll~~~  254 (255)
                      ..+..+++.+.. .....++.||.....+..-.......++|+|+|+.++..|+ ..|..+.++++.+
T Consensus        65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~  132 (220)
T cd02025          65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFS  132 (220)
T ss_pred             HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeE
Confidence            778888888887 35678899999988888765544567899999999998874 4466677766543

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.43  E-value=7.9e-13  Score=131.87  Aligned_cols=160  Identities=15%  Similarity=0.118  Sum_probs=113.5

Q ss_pred             cccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---CCCCeEEEEecCCCCCCCccCCc
Q 025293           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---KPPDVATVLPMDGFHLYLSQLDA  169 (255)
Q Consensus        94 il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~---~~~~~g~~i~~~~~~~~~~~l~~  169 (255)
                      +.+++|++.-+++|+.+.++||.||||||||+.++|.+....-..|+ ..++..   ..+ .+.++.....+.+.+.+|+
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~-~~~~aY~~e~DvH~p~lTV  206 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP-KKTVAYNSEQDVHFPELTV  206 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc-CceEEeccccccccceeEE
Confidence            44679999999999999999999999999999999987532222344 233321   111 2222333334444455899


Q ss_pred             ccChHHHHHhcCC---CCCccHHH-----HHHHHHhhccc-------CCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293          170 MEDPKEAHARRGA---PWTFNPLL-----LLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       170 ~~~~~~~~~~~~~---~~~~~~~~-----~~~~l~~l~~~-------~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      .+.+.+..+..+.   .+.....+     ...+++.+++.       .+..+.-.|||||+||.++-+++.+++++..||
T Consensus       207 reTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De  286 (1391)
T KOG0065|consen  207 RETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDE  286 (1391)
T ss_pred             eehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeec
Confidence            9988887776554   11111111     23566677765       234456789999999999999999999999999


Q ss_pred             CCCCCChhHHHHHHHHHHhh
Q 025293          235 NYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       235 p~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++.|||-.+.-++...++..
T Consensus       287 ~t~GLDSsTal~iik~lr~~  306 (1391)
T KOG0065|consen  287 ITRGLDSSTAFQIIKALRQL  306 (1391)
T ss_pred             ccccccHHHHHHHHHHHHHH
Confidence            99999999988888877653

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.40  E-value=4.9e-13  Score=119.76  Aligned_cols=138  Identities=17%  Similarity=0.209  Sum_probs=88.1

Q ss_pred             cccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCC---ccCCc
Q 025293           98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL---SQLDA  169 (255)
Q Consensus        98 ~~isl~i~~G-----eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~---~~l~~  169 (255)
                      .++.+.|+.|     |++..+|.||.|||||+++++|.++   |+.|.-+.          .+.+.+..+..   .+-++
T Consensus       353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~p----------~lnVSykpqkispK~~~tv  419 (592)
T KOG0063|consen  353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEIP----------VLNVSYKPQKISPKREGTV  419 (592)
T ss_pred             eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCccc----------ccceeccccccCccccchH
Confidence            6777777776     6789999999999999999999987   88774100          01111111110   00111


Q ss_pred             ccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH
Q 025293          170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (255)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l  247 (255)
                      ...  .....+..  ..+...+.++++-+...  .+..+..||||+.||+++|..|-..+++.+.|||.+.||-+.+...
T Consensus       420 R~l--l~~kIr~a--y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~A  495 (592)
T KOG0063|consen  420 RQL--LHTKIRDA--YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIA  495 (592)
T ss_pred             HHH--HHHHhHhh--hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHH
Confidence            110  01111111  01112233455444433  3456789999999999999999999999999999999998877655


Q ss_pred             HHHHH
Q 025293          248 SSMFD  252 (255)
Q Consensus       248 ~~ll~  252 (255)
                      ...+.
T Consensus       496 skvik  500 (592)
T KOG0063|consen  496 SKVIK  500 (592)
T ss_pred             HHHHH
Confidence            55443

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.36  E-value=1.2e-12  Score=114.44  Aligned_cols=134  Identities=25%  Similarity=0.383  Sum_probs=92.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (255)
                      +.-.++||.|+||||||||+++|.+++. .+|++|          . ..++.+++|+.....+.   ... .....+++.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~-~~~~~g----------~-V~vi~~D~f~~~~~~l~---~~g-~~~~~g~P~  123 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLS-RWPEHR----------K-VELITTDGFLHPNQVLK---ERN-LMKKKGFPE  123 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh-hcCCCC----------c-eEEEecccccccHHHHH---HcC-CccccCCCh
Confidence            4558999999999999999999999984 123333          1 23467888865321111   000 113456677


Q ss_pred             CccHHHHHHHHHhhcccCC-ccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh------hHHHHHHHHHHhh
Q 025293          185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEK  254 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~-~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~------~~~~~l~~ll~~~  254 (255)
                      .++...+.+.+..+.-+.. ...|.||.....++.-....+..++|+|+|+.+...++      +.+..+.+++|.+
T Consensus       124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~  200 (290)
T TIGR00554       124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFS  200 (290)
T ss_pred             hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEE
Confidence            7777778888888876653 77889998888877654455578999999999887543      3466677777654

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.35  E-value=1.9e-12  Score=107.49  Aligned_cols=145  Identities=48%  Similarity=0.842  Sum_probs=120.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (255)
                      +.-+.+|++|+.|+||||++..+..--    |..-..++....  .+..++.++||++....++..+++......+|.+.
T Consensus       117 n~~~l~glag~pGtgkst~~a~v~~aW----p~~~~~f~~e~i--~iaiivPMDGFHlsr~~LD~f~dP~~AharRGapw  190 (323)
T KOG2702|consen  117 NNEELTGLAGRPGTGKSTRIAAVDNAW----PVNVNKFAQESI--NIAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAPW  190 (323)
T ss_pred             cchheeeeecCCCCcchhHHHHHHhhc----chhhhhhhhhhc--ceeEEecccchhhhHHHHHhhcChHHHHhhcCCCc
Confidence            456899999999999999998887643    554333333222  25566899999999888999999999999999999


Q ss_pred             CccHHHHHHHHHhhc--ccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhhC
Q 025293          185 TFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW  255 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~--~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~~  255 (255)
                      .++...+.++++.+.  -..+.+++.|.++-+..+.--..+....+|+|++++++.||.++|..+.++++++|
T Consensus       191 TFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~  263 (323)
T KOG2702|consen  191 TFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKY  263 (323)
T ss_pred             ccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhhe
Confidence            999888888888777  45678999999999999987777777899999999999999999999999998875

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.29  E-value=7.1e-12  Score=105.36  Aligned_cols=41  Identities=10%  Similarity=-0.063  Sum_probs=31.8

Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH-HHHHH
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD  252 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l-~~ll~  252 (255)
                      -+-+|+++++.++.++.++|+|||+.++|+.....+ ..+++
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~  135 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIE  135 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHH
Confidence            455788888888999999999999999998653333 34443

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.28  E-value=1.3e-11  Score=102.35  Aligned_cols=111  Identities=27%  Similarity=0.420  Sum_probs=70.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  188 (255)
                      ++||+|+||||||||+++|.+++.               ..... ++..++++...   ...+........++.+..++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~~~~-v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~   61 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NPKVV-IISQDSYYKDL---SHEELEERKNNNYDHPDAFDF   61 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---------------CCCeE-EEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence            589999999999999999999873               22233 46777765332   111111111112233444555


Q ss_pred             HHHHHHHHhhcccCCccCC--CCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          189 LLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       189 ~~~~~~l~~l~~~~~~~~~--~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      ..+.+.+..+........+  .++.|++++..+   .+..++++|+|+|+++.++
T Consensus        62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence            5666777777665443333  456666655443   4567899999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.27  E-value=4.6e-12  Score=110.26  Aligned_cols=48  Identities=15%  Similarity=0.068  Sum_probs=42.9

Q ss_pred             CCCCCcccccchhhhhhhc---------cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          206 APSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~---------~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ...+|+||++++.+|++|+         .+|+++|+|||+++||+..+..+.+.+.+
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~  237 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEG  237 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhc
Confidence            3457999999999999875         69999999999999999999999998853

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.24  E-value=3.6e-11  Score=125.03  Aligned_cols=64  Identities=11%  Similarity=-0.049  Sum_probs=54.4

Q ss_pred             HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccC---CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~---~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+.+..++++   .-.+...|||||.||+-+|..|...   +.++||||||.||++.-.+.+.++|++.
T Consensus      1679 ~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L 1748 (1809)
T PRK00635       1679 PLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTL 1748 (1809)
T ss_pred             HHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            35566667765   4567789999999999999999754   6899999999999999999999998765

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.24  E-value=1.1e-11  Score=102.00  Aligned_cols=48  Identities=6%  Similarity=-0.088  Sum_probs=33.9

Q ss_pred             ccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH-HHHH
Q 025293          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD  252 (255)
Q Consensus       204 ~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~-~ll~  252 (255)
                      ...+.||+|+++...+.. .+.+|+++|+|||+.++|+.....+. .+++
T Consensus        57 ~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~  105 (185)
T smart00534       57 QGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLE  105 (185)
T ss_pred             ccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            345678888876443332 34599999999999999998766653 4443

>TIGR01069 mutS2 MutS2 family protein

Probab=99.22  E-value=8.8e-12  Score=122.24  Aligned_cols=113  Identities=11%  Similarity=0.066  Sum_probs=73.2

Q ss_pred             cccccCCC-cEEEEECCCCCcHHHHHHHHHHH-hcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293          100 LASNVNVK-HIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (255)
Q Consensus       100 isl~i~~G-eivgLiGpNGsGKSTLLk~L~Gl-l~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~  177 (255)
                      +++.+..+ ++++|+||||+|||||||+|+|. +.   +..|-             .+.......    +..      +.
T Consensus       314 ~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~---aq~G~-------------~Vpa~~~~~----~~~------~d  367 (771)
T TIGR01069       314 FTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALM---FQSGI-------------PIPANEHSE----IPY------FE  367 (771)
T ss_pred             ceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHH---HHhCC-------------CccCCcccc----ccc------hh
Confidence            67888877 89999999999999999999998 32   33331             111110000    000      00


Q ss_pred             HhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH-HHHH
Q 025293          178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD  252 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~-~ll~  252 (255)
                      ..+.   ....  -.++.        .....||+++++++.++..+ ..+.++|+|||+.|+|+.....+. .++.
T Consensus       368 ~i~~---~i~~--~~si~--------~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe  429 (771)
T TIGR01069       368 EIFA---DIGD--EQSIE--------QNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILE  429 (771)
T ss_pred             heee---ecCh--HhHHh--------hhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            0100   0000  01222        23567999999998887766 689999999999999999988884 4554

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.22  E-value=3e-11  Score=102.59  Aligned_cols=130  Identities=45%  Similarity=0.751  Sum_probs=83.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE-EecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~-i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (255)
                      .+..++||+|+||||||||++.|+++++   ++.|        ...   + +.+++++.......  . . ......+.+
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g--------~~~---v~i~~D~~~~~~~~~~--~-~-g~~~~~~~~   92 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGE--------LPA---IQVPMDGFHLDNAVLD--A-H-GLRPRKGAP   92 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhh---hccC--------Cce---EEEecccccCCHHHHH--h-c-ccccccCCC
Confidence            4578999999999999999999999996   5554        111   2 56666653321000  0 0 001112344


Q ss_pred             CCccHHHHHHHHHhhcccC-CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          184 WTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~-~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      ..++...+..++..+..+. ....+.|+......+.-...+....+++|.|+.++.++...+..+.+.++
T Consensus        93 ~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D  162 (229)
T PRK09270         93 ETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFD  162 (229)
T ss_pred             CCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCC
Confidence            5566666777777776654 56667787777666543333333678999999999888766666665554

>TIGR00235 udk uridine kinase

Probab=99.19  E-value=3.5e-11  Score=100.61  Aligned_cols=117  Identities=24%  Similarity=0.377  Sum_probs=69.0

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (255)
                      ++|+++||+|+||||||||++.|++++.               ....+ ++.++++..........+   .....++.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~~   64 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---------------KLEIV-IISQDNYYKDQSHLEMAE---RKKTNFDHPD   64 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc---------------ccCCe-EecccccccChhhCCHHH---hcCCCCCCcc
Confidence            6799999999999999999999999984               22233 367777643321111000   0000111122


Q ss_pred             CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      .++...+.+.++.+.-+.....+.|+.....+.. ........+++|+|+.++.+++
T Consensus        65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~-~~~~~~~~~~vIieG~~~~~~~  120 (207)
T TIGR00235        65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPK-ETVHIEPKDVVILEGIMPLFDE  120 (207)
T ss_pred             HhHHHHHHHHHHHHHCCCCEecccceeecCCCCC-ceEEeCCCCEEEEEehhhhchH
Confidence            3334445566666665555666666654444422 1122346789999998887664

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.19  E-value=1.5e-10  Score=110.89  Aligned_cols=52  Identities=13%  Similarity=0.032  Sum_probs=46.2

Q ss_pred             CccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          203 SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      -.+...|||||-||+-+|.-|....   .++||||||.||-..-.++++++|+..
T Consensus       817 GQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rL  871 (935)
T COG0178         817 GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRL  871 (935)
T ss_pred             CCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence            3556789999999999999997766   899999999999999999999988765

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.17  E-value=6e-11  Score=99.97  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+|+++++.+ ++++|+||||+|||||||++++..
T Consensus        20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            44999999987 999999999999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PLN02796 D-glycerate 3-kinase

Probab=99.17  E-value=5.5e-11  Score=105.64  Aligned_cols=134  Identities=24%  Similarity=0.329  Sum_probs=83.5

Q ss_pred             ccccccccc---CCCcE-----EEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccC
Q 025293           96 PTSALASNV---NVKHI-----VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL  167 (255)
Q Consensus        96 ~l~~isl~i---~~Gei-----vgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l  167 (255)
                      +++++++.+   ++|+.     +||+|++|||||||++.|.+++.   +. |         ...|. +.+++++....+.
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g---------~~~g~-IsiDdfYLt~~e~  146 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G---------RRAAS-LSIDDFYLTAADQ  146 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C---------CceeE-EEECCcccchhhH
Confidence            447888887   55665     99999999999999999999994   21 1         12454 7889987643211


Q ss_pred             Ccc--cCh-HHHHHhcCCCCCccHHHHHHHHHhhc----ccCCccCCCCCc----ccccchhhh--hhhccCCcEEEEcC
Q 025293          168 DAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDG  234 (255)
Q Consensus       168 ~~~--~~~-~~~~~~~~~~~~~~~~~~~~~l~~l~----~~~~~~~~~lS~----G~kqrv~la--~~l~~~~~illlDe  234 (255)
                      ...  +++ ......+|.+..++.....+.++.+.    -+....+|.|+.    |+..|..-.  ..+...++|+|+++
T Consensus       147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG  226 (347)
T PLN02796        147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG  226 (347)
T ss_pred             HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence            100  010 11122345555566655666666665    234456777754    444565422  12334679999999


Q ss_pred             CCCCCChhH
Q 025293          235 NYLFLDGGV  243 (255)
Q Consensus       235 p~~~LD~~~  243 (255)
                      .+.|.-+..
T Consensus       227 w~vG~~p~~  235 (347)
T PLN02796        227 WMLGFKPLG  235 (347)
T ss_pred             cccCCCCCC
Confidence            999986544

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.17  E-value=5.4e-11  Score=100.14  Aligned_cols=62  Identities=18%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             HHHHHHHHhhcccCCccCCCCCcccccchhhhhhh----ccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       189 ~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l----~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+...+..+.+..    ..+||||+..+++|..|    ..+.+++||||+.+.||+..+..+.++|.+.
T Consensus       121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~  186 (220)
T PF02463_consen  121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKEL  186 (220)
T ss_dssp             HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHH
T ss_pred             cccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34445555444433    38999999999988665    4578999999999999999999999998753

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=99.14  E-value=8.2e-11  Score=99.38  Aligned_cols=42  Identities=21%  Similarity=0.169  Sum_probs=36.8

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHH-HhcccCCCCCc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR-RINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G-ll~~~~p~~G~  140 (255)
                      +.+|+++.+.+|++++|+||||+||||+++++++ .+.   +..|.
T Consensus        20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~l---a~~G~   62 (222)
T cd03287          20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIM---AQIGS   62 (222)
T ss_pred             EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHH---HhCCC
Confidence            4499999999999999999999999999999999 443   66663

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=99.12  E-value=1e-10  Score=99.98  Aligned_cols=134  Identities=34%  Similarity=0.579  Sum_probs=107.1

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (255)
                      -+..-+|||.|+-|+||||+.+.+.-++. .||.          .+ ....+.+|||..++..+.    ..-.+.+.|.|
T Consensus        79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~-~~~~----------~~-~v~lvpmDGFhy~n~~L~----~~glm~rKGfP  142 (283)
T COG1072          79 QQRPFIIGIAGSVAVGKSTTARILQALLS-RWPE----------SP-KVDLVTMDGFHYPNAVLD----ERGLMARKGFP  142 (283)
T ss_pred             CCCCEEEEeccCccccHHHHHHHHHHHHh-hCCC----------CC-ceEEEeccccccCHhHhh----hccccccCCCC
Confidence            34467899999999999999999999985 1221          23 345689999987754333    22345678899


Q ss_pred             CCccHHHHHHHHHhhccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          184 WTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ..++...+.+.+..+.-+ .+..+|.||+-....+.-+..+..+|+|||++++...+|...|-.+.+++|.
T Consensus       143 eSyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDf  213 (283)
T COG1072         143 ESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDF  213 (283)
T ss_pred             ccccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceE
Confidence            999999998988888855 3478999999999999999999999999999999999999887777777664

>PRK05439 pantothenate kinase; Provisional

Probab=99.10  E-value=1.3e-10  Score=102.52  Aligned_cols=133  Identities=28%  Similarity=0.370  Sum_probs=92.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (255)
                      ..-+|||.|+.|||||||.+.|..++.   ...+        .+.+. ++.+|+|+.....+..    .......|.|..
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~---~~~~--------~~~v~-vi~~DdFy~~~~~l~~----~~l~~~kg~Pes  148 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLS---RWPE--------HPKVE-LVTTDGFLYPNAVLEE----RGLMKRKGFPES  148 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH---hhCC--------CCceE-EEeccccccCHHHHhh----hhccccCCCccc
Confidence            346899999999999999999999874   1100        12344 5899999765432210    112224567778


Q ss_pred             ccHHHHHHHHHhhcccCC-ccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh--HHHHHHHHHHhh
Q 025293          186 FNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDEK  254 (255)
Q Consensus       186 ~~~~~~~~~l~~l~~~~~-~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~--~~~~l~~ll~~~  254 (255)
                      ++...+.+.+..+.-+.. ...+.||.-...++.-....+..++|+|+|+.+...++.  .+..+.++++.+
T Consensus       149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~  220 (311)
T PRK05439        149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFS  220 (311)
T ss_pred             ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEE
Confidence            888888888888887664 778888888777764343445689999999988775544  466677776643

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.08  E-value=6.9e-10  Score=92.79  Aligned_cols=117  Identities=24%  Similarity=0.389  Sum_probs=69.8

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  184 (255)
                      .++.+++|.|+||||||||.+.|++.+.               ...+.. +.+++++.....++..   ......++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------~~~~~~-i~~D~~~~~~~~~~~~---~~~~~~~~~~~   64 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------DESIAV-IPQDSYYKDQSHLSFE---ERVKTNYDHPD   64 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------CCceEE-EeCCccccCcccCCHH---HhcccCccCcc
Confidence            4788999999999999999999999883               233333 6777775432211110   01111222344


Q ss_pred             CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      .++...+.+.+..+.-......+.|+.....+.... ......+++|+|++++..++
T Consensus        65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~  120 (209)
T PRK05480         65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDE  120 (209)
T ss_pred             cccHHHHHHHHHHHHcCCccccCcccccccccCCCe-EEeCCCCEEEEEeehhcCch
Confidence            455566667777666544444555543333332211 12346789999999998764

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.06  E-value=1.2e-10  Score=97.61  Aligned_cols=47  Identities=6%  Similarity=-0.083  Sum_probs=41.4

Q ss_pred             CCCcc--cccchhhhhhhccCCcEEEEcCCC-----CCCChhHHHHHHHHHHhh
Q 025293          208 SFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       208 ~lS~G--~kqrv~la~~l~~~~~illlDep~-----~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+++  +++++.+|++++.+|+++++|||+     ++||+..++.+.++|.+.
T Consensus       150 a~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~  203 (215)
T PTZ00132        150 AKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAA  203 (215)
T ss_pred             CCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHH
Confidence            33444  777899999999999999999999     999999999999999764

>PTZ00301 uridine kinase; Provisional

Probab=99.05  E-value=5.7e-10  Score=93.50  Aligned_cols=126  Identities=22%  Similarity=0.343  Sum_probs=82.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCcc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN  187 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  187 (255)
                      -+|||.|++|||||||.+.|...+.   -..         .+....++.+|+|+.....++..   ......++.+..++
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~---~~~---------~~~~~~vi~~D~yy~~~~~~~~~---~~~~~~~d~p~a~D   68 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELM---AHC---------GPVSIGVICEDFYYRDQSNIPES---ERAYTNYDHPKSLE   68 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHH---hhc---------CCCeEEEeCCCCCccCcccCCHH---HhcCCCCCChhhhC
Confidence            5899999999999999998876552   001         12223347788887554322211   11112344566777


Q ss_pred             HHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       188 ~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ...+.+.+..+.-+.....+.|+.....|..-.. -+..++|+|+|+.++..++    .+.++++.
T Consensus        69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~-~i~p~~ViIvEGi~~l~~~----~l~~l~D~  129 (210)
T PTZ00301         69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAV-TMTPKSVLIVEGILLFTNA----ELRNEMDC  129 (210)
T ss_pred             HHHHHHHHHHHHcCCcccCCCcccccCCcCCceE-EeCCCcEEEEechhhhCCH----HHHHhCCE
Confidence            7778788888877767778888877666654322 2346799999999996675    55566554

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=98.98  E-value=2.2e-09  Score=89.53  Aligned_cols=124  Identities=27%  Similarity=0.398  Sum_probs=88.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (255)
                      +.-+|||.|++||||||+.+.|.-.+.               ..... +++.|+|+-.....+..+   .....+..+..
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---------------~~~~~-~I~~D~YYk~~~~~~~~~---~~~~n~d~p~A   67 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLG---------------VEKVV-VISLDDYYKDQSHLPFEE---RNKINYDHPEA   67 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhC---------------cCcce-EeeccccccchhhcCHhh---cCCcCccChhh
Confidence            456899999999999999999999984               23333 488888876543322211   11123334667


Q ss_pred             ccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       186 ~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++...+.+-+..+.-+.....|.||.-+..|..-. .-....+|+|+|+-+...|+    .+.++++.
T Consensus        68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~-i~~~p~~VVIvEGi~~l~d~----~lr~~~d~  130 (218)
T COG0572          68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPET-IKVEPNDVVIVEGILLLYDE----RLRDLMDL  130 (218)
T ss_pred             hcHHHHHHHHHHHHcCCcccccccchhcccccCCc-cccCCCcEEEEecccccccH----HHHhhcCE
Confidence            77788888888888888888899998777777411 12336799999999999996    66666553

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.97  E-value=3.7e-10  Score=84.18  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=31.4

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~  128 (255)
                      +|++++|++++|++++|+||||||||||++++.
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            679999999999999999999999999999975

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=98.96  E-value=4e-09  Score=89.68  Aligned_cols=29  Identities=17%  Similarity=0.252  Sum_probs=26.3

Q ss_pred             cCCCcEEEEECCCCCcHHHH-HHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTL-Lk~L~Gll~  132 (255)
                      +++|+++.|+|+|||||||| ++.+.+.++
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~   50 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ   50 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            67899999999999999999 689998864

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.96  E-value=4.7e-10  Score=110.42  Aligned_cols=44  Identities=11%  Similarity=-0.083  Sum_probs=38.6

Q ss_pred             cCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       205 ~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                      ..+.||++|++++.+++++ ..|.++|+|||+.|+|+.....+..
T Consensus       387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~  430 (782)
T PRK00409        387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAI  430 (782)
T ss_pred             chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHH
Confidence            4678999999999998887 6899999999999999988777743

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.92  E-value=6.1e-10  Score=102.39  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=35.2

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      +|++||+++++||+++|+|||||||||||+  +|+..   |++|
T Consensus        21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sG   59 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEG   59 (504)
T ss_pred             HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCC
Confidence            569999999999999999999999999999  67765   6666

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=98.91  E-value=5.8e-09  Score=94.66  Aligned_cols=124  Identities=22%  Similarity=0.312  Sum_probs=72.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcc--cCh-HHHHHhcCCC
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAM--EDP-KEAHARRGAP  183 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~--~~~-~~~~~~~~~~  183 (255)
                      --+|||.|++|||||||++.|.++++   +. |         ...+. +.+|+|+....+....  .++ ......+|.+
T Consensus       212 PlIIGIsG~qGSGKSTLa~~L~~lL~---~~-g---------~~vgv-ISiDDfYLt~eer~kL~~~nP~n~LL~~RG~P  277 (460)
T PLN03046        212 PLVIGFSAPQGCGKTTLVFALDYLFR---VT-G---------RKSAT-LSIDDFYLTAEGQAELRERNPGNALLELRGNA  277 (460)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc---cc-C---------CceEE-EEECCccCChHHHHHHHhhCccchhhcccCCC
Confidence            47899999999999999999999984   21 1         23454 7899997532111000  000 0011122334


Q ss_pred             CCccHHHHHHHHHhh----cccCCccCCCCCc----ccccchhhhh--hhccCCcEEEEcCCCCCCChhHH
Q 025293          184 WTFNPLLLLNCLKNL----RNQGSVYAPSFDH----GVGDPVEDDI--LVGLQHKVVIVDGNYLFLDGGVW  244 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l----~~~~~~~~~~lS~----G~kqrv~la~--~l~~~~~illlDep~~~LD~~~~  244 (255)
                      ..++.....+.++.+    .-+....+|.|+.    |+..|+....  .+...++|+|+++.+.|.-+...
T Consensus       278 GTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~  348 (460)
T PLN03046        278 GSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPN  348 (460)
T ss_pred             ccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCCh
Confidence            455554444555554    2334455666654    4455764321  23346799999999999865443

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.91  E-value=4e-09  Score=91.61  Aligned_cols=29  Identities=24%  Similarity=0.377  Sum_probs=25.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      .-++|+||||||||||+++|+|++.   |++|
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G  140 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS---TGIS  140 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC---CCCc
Confidence            5789999999999999999999996   5555

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=98.90  E-value=2.4e-09  Score=100.78  Aligned_cols=115  Identities=26%  Similarity=0.434  Sum_probs=72.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF  186 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  186 (255)
                      --+|||.||||||||||++.|++++    |.             .+ ++.+++|+...         ......+..+..+
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglL----p~-------------vg-vIsmDdy~~~~---------~~i~~nfD~P~a~  117 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFM----PS-------------IA-VISMDNYNDSS---------RIIDGNFDDPRLT  117 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhC----CC-------------cE-EEEEcceecch---------hhhCccCCChhhc
Confidence            3589999999999999999999987    32             33 47888874211         0000011112223


Q ss_pred             cHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       187 ~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +...+.+.+..+.-+....++.|+.-...|..-........+|+|+|+.++..+     .+.++++.
T Consensus       118 D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDl  179 (656)
T PLN02318        118 DYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDL  179 (656)
T ss_pred             chhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCE
Confidence            334455566666666666778887766666532222345789999999999652     56666554

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=98.89  E-value=3.9e-10  Score=93.32  Aligned_cols=118  Identities=31%  Similarity=0.475  Sum_probs=73.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCC--CeEEEEecCCCCCCCccCCcccChHHHHH--hcCCCC
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP--DVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPW  184 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~--~~g~~i~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~  184 (255)
                      +|||.|++|||||||.+.|...+.    ..|.       .+  ..+ .+.+++++...   ...+.......  .+..+.
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~----~~~~-------~~~~~~~-~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~   65 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN----KRGI-------PAMEMDI-ILSLDDFYDDY---HLRDRKGRGENRYNFDHPD   65 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT----TCTT-------TCCCSEE-EEEGGGGBHHH---HHHHHHHHCTTTSSTTSGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC----ccCc-------CccceeE-EEeeccccccc---chhhHhhccccccCCCCcc
Confidence            689999999999999999999993    3331       10  123 35566664221   00000000000  112244


Q ss_pred             CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~  242 (255)
                      .++...+.+.+..+.-+.....+.|+.....+.. ...+..+++|+|+|+.++.+|+.
T Consensus        66 a~d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~  122 (194)
T PF00485_consen   66 AFDFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE  122 (194)
T ss_dssp             GBSHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC
T ss_pred             ccCHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee
Confidence            5666777778888877776677778776666555 22334588999999999999975

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.89  E-value=8.3e-10  Score=99.29  Aligned_cols=142  Identities=17%  Similarity=0.141  Sum_probs=85.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE-------ecCCCCCC-CccCCcccChHHH
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL-------PMDGFHLY-LSQLDAMEDPKEA  176 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i-------~~~~~~~~-~~~l~~~~~~~~~  176 (255)
                      .+|++.|++|-||.||||-+++++|-++   |.-|.+..    .++|..++       .+++|.-. ...+...-.+.+.
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~----pp~w~~il~~frgselq~yftk~le~~lk~~~kpQyv  170 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDN----PPDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQYV  170 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCC----CcchHHHhhhhhhHHHhhhhhhhccccccCcCChHHH
Confidence            4699999999999999999999999998   88775322    12111100       01111100 0001111111111


Q ss_pred             HHh----cC----C-CCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHH
Q 025293          177 HAR----RG----A-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (255)
Q Consensus       177 ~~~----~~----~-~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~  245 (255)
                      ...    .+    . ....+......+++.+.+  ..++.+.++|||+-||.++|.+.+..+++.++|||-+-||...+.
T Consensus       171 d~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRL  250 (592)
T KOG0063|consen  171 DQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRL  250 (592)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhh
Confidence            000    00    0 000000111223333332  256778899999999999999999999999999999999998887


Q ss_pred             HHHHHHHh
Q 025293          246 DVSSMFDE  253 (255)
Q Consensus       246 ~l~~ll~~  253 (255)
                      .....|..
T Consensus       251 kaA~~IRs  258 (592)
T KOG0063|consen  251 KAAITIRS  258 (592)
T ss_pred             hHHHHHHH
Confidence            77666654

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.87  E-value=5.7e-09  Score=97.07  Aligned_cols=126  Identities=19%  Similarity=0.229  Sum_probs=72.6

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      ++++.++.+.+|.+++|+||||+||||++..|++.+.   ...|        ...++. +..|.+.     ....+.+..
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G--------~~kV~L-I~~Dt~R-----igA~EQLr~  307 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG--------ASKVAL-LTTDSYR-----IGGHEQLRI  307 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC--------CCeEEE-EeCCccc-----hhHHHHHHH
Confidence            3466777788999999999999999999999999874   4444        234453 5555542     355666777


Q ss_pred             HHHhcCCCCCc--cHHHHHHHHHhhcccCCccCCCCCcccccch---hhhhhhccCC-----cEEEEcCCCCCCC
Q 025293          176 AHARRGAPWTF--NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQH-----KVVIVDGNYLFLD  240 (255)
Q Consensus       176 ~~~~~~~~~~~--~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv---~la~~l~~~~-----~illlDep~~~LD  240 (255)
                      +...++++...  ........+..+.-.....+..  .|..++.   .....++.++     .+|++|..+.+.+
T Consensus       308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDT--aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~  380 (484)
T PRK06995        308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDT--IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT  380 (484)
T ss_pred             HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCC--CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH
Confidence            67776663221  1112222222222222233344  3433333   2222333232     6788888776644

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.82  E-value=1.7e-08  Score=87.95  Aligned_cols=106  Identities=27%  Similarity=0.422  Sum_probs=59.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC----CC
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW  184 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~  184 (255)
                      ++||+|+||||||||++.|++++.   +             ..+.++..++++..    ..     ..+...++    +.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~---~-------------~~~~vi~~Dd~~~~----~~-----~~r~~~g~~~~~p~   55 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG---S-------------DLVTVICLDDYHSL----DR-----KGRKETGITALDPR   55 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC---C-------------CceEEEECcccccC----CH-----HHHHHhhccccccc
Confidence            589999999999999999999984   2             22445666655321    11     01112222    11


Q ss_pred             CccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       185 ~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      ......+.+.++.+.-......+.|+.-...... . ..+...+++|+|++++..++
T Consensus        56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~-~-~~i~~~~ivIvEG~~~l~~~  110 (273)
T cd02026          56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDP-P-ELIKPTKIVVIEGLHPLYDE  110 (273)
T ss_pred             chhHHHHHHHHHHHHCCCCcccccccccCCCcCC-c-EEcCCCCEEEEeeehhhCch
Confidence            1222333445555554444444555543332111 0 11235689999999977664

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.82  E-value=3e-09  Score=89.67  Aligned_cols=35  Identities=29%  Similarity=0.361  Sum_probs=33.0

Q ss_pred             ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+|++|.+++|++++|.||||+||||+++++++..
T Consensus        20 ~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~   54 (218)
T cd03286          20 PNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV   54 (218)
T ss_pred             EeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence            39999999999999999999999999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.81  E-value=6.6e-09  Score=95.36  Aligned_cols=132  Identities=14%  Similarity=0.165  Sum_probs=84.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      .++.+.+++.|.... +  +++. .|.+.+|++++|+|+||+|||||+++|++...                ++.+. +.
T Consensus       130 ~~~r~~i~~~l~TGi-r--aID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----------------~~~gv-I~  188 (432)
T PRK06793        130 AFEREEITDVFETGI-K--SIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK----------------ADINV-IS  188 (432)
T ss_pred             chheechhhccCCCC-E--EEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC----------------CCeEE-EE
Confidence            467777888886532 2  4576 59999999999999999999999999999874                34444 43


Q ss_pred             cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhc-------cCCcE
Q 025293          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKV  229 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~-------~~~~i  229 (255)
                      ..|...    ..+.   ++.....+..          -+++--  .-......|.+++.|++.+.+.+       ..+-+
T Consensus       189 ~iGerg----~ev~---e~~~~~l~~~----------gl~~tv--vv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~VL  249 (432)
T PRK06793        189 LVGERG----REVK---DFIRKELGEE----------GMRKSV--VVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVL  249 (432)
T ss_pred             eCCCCc----ccHH---HHHHHHhhhc----------ccceeE--EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcEE
Confidence            333311    0111   1111111100          000000  01234567899999998766655       67899


Q ss_pred             EEEcCCCCCCChhHHHHHHHH
Q 025293          230 VIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       230 lllDep~~~LD~~~~~~l~~l  250 (255)
                      +++|++|...|+.  .++...
T Consensus       250 lilDslTr~a~A~--reisl~  268 (432)
T PRK06793        250 LMMDSVTRFADAR--RSVDIA  268 (432)
T ss_pred             EEecchHHHHHHH--HHHHHH
Confidence            9999999999984  444433

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.78  E-value=6.1e-09  Score=89.46  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.0

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |.=+.+.+|++++|+||+|+|||||++.|++.+.
T Consensus         8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128           8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            3345788999999999999999999999999874

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.76  E-value=2.8e-08  Score=81.72  Aligned_cols=121  Identities=24%  Similarity=0.321  Sum_probs=72.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  188 (255)
                      +++|.|++|||||||.+.|+..+.               .   ..++.+++|+.....+.....   ...+++.+..++.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~---------------~---~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~   59 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP---------------N---CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM   59 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC---------------C---CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence            589999999999999999998762               1   224788888765432221100   1113344556677


Q ss_pred             HHHHHHHHhhcccCCccCCCCCcccccchh-------------hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       189 ~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~-------------la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+.+.+..+.-+.....+.++.+......             -+.......+++|+|++++..|+    .+.++++.+
T Consensus        60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~~  134 (187)
T cd02024          60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDIR  134 (187)
T ss_pred             HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCce
Confidence            777777777765543333333443321110             11223446789999999988876    355555543

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.75  E-value=9.7e-09  Score=102.36  Aligned_cols=62  Identities=11%  Similarity=0.039  Sum_probs=53.3

Q ss_pred             HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+..+++.   .++.+..|||||+||+.+|++|+.+|  +++||||||++||+.....+.++|.+.
T Consensus       469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L  535 (924)
T TIGR00630       469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRL  535 (924)
T ss_pred             HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHH
Confidence            345555554   46788999999999999999999876  899999999999999999999999764

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.74  E-value=9.2e-09  Score=102.72  Aligned_cols=62  Identities=11%  Similarity=0.037  Sum_probs=54.3

Q ss_pred             HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.++.+++.   .++.+..|||||+||+.||++|+.+|  +++||||||++||+.....+.++|.+.
T Consensus       471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L  537 (943)
T PRK00349        471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHL  537 (943)
T ss_pred             HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHH
Confidence            356666665   46788999999999999999999887  999999999999999999999998753

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.69  E-value=9.5e-08  Score=77.61  Aligned_cols=48  Identities=10%  Similarity=-0.013  Sum_probs=36.7

Q ss_pred             CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ....|+||-----+...+ ...-+.|||||-++|.|.-+..+..++...
T Consensus       127 Lh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~l  174 (233)
T COG3910         127 LHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDL  174 (233)
T ss_pred             hhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHH
Confidence            445699987544444444 378899999999999999998888888654

>PLN02348 phosphoribulokinase

Probab=98.67  E-value=4.4e-08  Score=88.50  Aligned_cols=121  Identities=22%  Similarity=0.296  Sum_probs=73.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC----CCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS----QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~----~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~  180 (255)
                      +--+|||.|++|||||||.+.|...+.    ..+. ..++    +........++.+|+|+.....         .+...
T Consensus        48 ~p~IIGIaG~SGSGKSTfA~~L~~~Lg----~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~~  114 (395)
T PLN02348         48 GTVVIGLAADSGCGKSTFMRRLTSVFG----GAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKEK  114 (395)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHh----hccCCCccccccccccccCceEEEEcccccCCChh---------hHhhc
Confidence            345899999999999999999999983    2111 0000    0111233456889998753210         01111


Q ss_pred             C----CCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          181 G----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       181 ~----~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      +    .+...+...+.+.++.+.-+.....+.|+.-...... .. .+..++|+|+|+.+...|+
T Consensus       115 g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~-~e-~I~p~~VVIVEGlh~L~~e  177 (395)
T PLN02348        115 GVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP-PE-LIEPPKILVIEGLHPMYDE  177 (395)
T ss_pred             CCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC-cE-EcCCCcEEEEechhhccCc
Confidence            1    1233444556677777776666667777665444332 11 3446899999999988876

>PRK13695 putative NTPase; Provisional

Probab=98.67  E-value=4.3e-09  Score=85.50  Aligned_cols=47  Identities=13%  Similarity=0.058  Sum_probs=36.9

Q ss_pred             cCCCCCcccccchhhhhhhccCCcEEEEcC--CCCCCChhHHHHHHHHH
Q 025293          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       205 ~~~~lS~G~kqrv~la~~l~~~~~illlDe--p~~~LD~~~~~~l~~ll  251 (255)
                      +...+|++++-+..+++.....|+++++||  |+..+|+...+.+.+++
T Consensus        75 ~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~  123 (174)
T PRK13695         75 YVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL  123 (174)
T ss_pred             EEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH
Confidence            344688999998888888888999999999  66677776666666665

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=98.66  E-value=5.4e-08  Score=79.59  Aligned_cols=112  Identities=24%  Similarity=0.347  Sum_probs=66.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  188 (255)
                      +++|.|++|||||||.+.|...+.    ..|         ... .++.+++|+.+.  ..  .  .........+..++.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~----~~~---------~~~-~~i~~Ddf~~~~--~~--~--~~~~g~~d~~~~~d~   60 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR----VNG---------IGP-VVISLDDYYVPR--KT--P--RDEDGNYDFESILDL   60 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH----HcC---------CCE-EEEehhhcccCc--cc--c--cccCCCCCCCccccH
Confidence            589999999999999999999883    222         122 347888886542  00  0  000001111211345


Q ss_pred             HHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCC
Q 025293          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       189 ~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD  240 (255)
                      ..+.+.+..+.-+.....+.|+.-...+..-........+|+|+|+.++..+
T Consensus        61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~  112 (179)
T cd02028          61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE  112 (179)
T ss_pred             HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence            5566666666655555666676555554432122344678999999999643

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK07429 phosphoribulokinase; Provisional

Probab=98.64  E-value=1.5e-07  Score=83.89  Aligned_cols=108  Identities=26%  Similarity=0.420  Sum_probs=61.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC----
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----  182 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~----  182 (255)
                      --++||.|+||||||||++.|++++.                +..+.++..++++..    +    .. .+...+.    
T Consensus         8 ~~IIgI~G~SGSGKSTla~~L~~ll~----------------~~~~~vi~~Dd~~~~----~----~~-~r~~~g~~~l~   62 (327)
T PRK07429          8 PVLLGVAGDSGCGKTTFLRGLADLLG----------------EELVTVICTDDYHSY----D----RK-QRKELGITALD   62 (327)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHhHhc----------------cCceEEEEecccccC----C----HH-HHHhcCCcccC
Confidence            35899999999999999999999984                222334677776421    1    01 1122232    


Q ss_pred             CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      +...+...+...++.+.-+.....+.++........-  ......+++|+|+++...++
T Consensus        63 p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~  119 (327)
T PRK07429         63 PRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYDE  119 (327)
T ss_pred             ccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCcH
Confidence            1222233444555555544444444444332222211  11235689999999877775

>COG4240 Predicted kinase [General function prediction only]

Probab=98.59  E-value=8.5e-08  Score=80.00  Aligned_cols=126  Identities=33%  Similarity=0.480  Sum_probs=86.4

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCcc-CCcccChHHHHHhcCC
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ-LDAMEDPKEAHARRGA  182 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~~  182 (255)
                      -.+.-|+||.||-||||||+.-.|..++.    ..|        ....++ .++|+++....+ +...++..-....+|.
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~----~kg--------~ert~~-lSLDDlYlthadrl~La~q~npllq~RGl  113 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLA----AKG--------LERTAT-LSLDDLYLTHADRLRLARQVNPLLQTRGL  113 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHH----Hhc--------ccceEE-eehhhhhcchHHHHHHHHhcCchhcccCC
Confidence            44567999999999999999999998884    222        123454 788998765321 0111111223345677


Q ss_pred             CCCccHHHHHHHHHhhcccC-CccCCCCCc----ccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293          183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~----G~kqrv~la~~l~~~~~illlDep~~~LD~~  242 (255)
                      +..++......|++.+.-+. ...++.|+.    |...|..-...+-.+.+|+|+++.|.|..|.
T Consensus       114 pGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPi  178 (300)
T COG4240         114 PGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPI  178 (300)
T ss_pred             CCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeecccC
Confidence            77788777788888776553 346677765    8888876666666679999999999996654

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.56  E-value=4.4e-08  Score=80.56  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=35.3

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .-+.+.++.|+.++|+||||||||||++.|+|+++   |+.|.
T Consensus        16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~   55 (186)
T cd01130          16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI   55 (186)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence            45667899999999999999999999999999996   66665

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.52  E-value=1.3e-07  Score=63.30  Aligned_cols=35  Identities=23%  Similarity=0.381  Sum_probs=29.0

Q ss_pred             cccccccCC-CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           98 SALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~isl~i~~-GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++..+++.+ |.++.|.|+||||||||+..|.=++.
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~   48 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLY   48 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHc
Confidence            445666765 57999999999999999999988774

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.50  E-value=1.7e-08  Score=84.84  Aligned_cols=47  Identities=13%  Similarity=0.116  Sum_probs=37.9

Q ss_pred             CCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          207 PSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 ~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ..+|.|+++.+.++..+...+   .++++|||-++|.|..+..+.++|.+
T Consensus       235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~  284 (303)
T PF13304_consen  235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKE  284 (303)
T ss_dssp             S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHh
Confidence            356999999988777765555   89999999999999999999999864

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.47  E-value=1.2e-07  Score=87.26  Aligned_cols=59  Identities=17%  Similarity=0.163  Sum_probs=50.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .+.++.+++++.|...   +.+++.++ .|.+|++++|+|+||||||||+++|+++..   |+.|.
T Consensus       137 p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gv  195 (450)
T PRK06002        137 PPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVV  195 (450)
T ss_pred             CCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeee
Confidence            3578999999999753   22558885 899999999999999999999999999986   77765

>TIGR00767 rho transcription termination factor Rho

Probab=98.45  E-value=2.9e-07  Score=83.47  Aligned_cols=101  Identities=22%  Similarity=0.261  Sum_probs=65.2

Q ss_pred             CCCCccCcchHHHHhhCcC--CCCccccccc-----hhhhhhhhHHhhhc--ccCCCeEEecCchheehhhhccccccc-
Q 025293           29 LPSGHHGFLSFSWIRRNAN--AQPVFGKTRS-----LVQNKTSLKVLCSQ--RREIPVVEARCMDEVYDALAQRLLPTS-   98 (255)
Q Consensus        29 ~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~-----~~~~~~~~~~~~~~--~~~~~~l~v~~lsk~y~~~~~~il~l~-   98 (255)
                      +++|....++..-|||..=  .....+..|.     +...+.+++.....  .....-++++||++.|.+  .+ ++|+ 
T Consensus        73 ~~~~~d~yvs~~~i~~~~lr~gd~v~g~~R~~~~~ER~~~Ll~v~~vn~~~~e~~~~ri~Fe~LTf~YP~--er-~~Le~  149 (415)
T TIGR00767        73 LPGPDDIYVSPSQIRRFNLRTGDTIEGQIRSPKEGERYFALLKVESVNGDDPEKAKNRVLFENLTPLYPN--ER-LRLET  149 (415)
T ss_pred             CCCCCCeeeCHHHHHhcCCCCCCEEEEEEeccccHhHHHHHhCCCccCCCCccccCCCeEEEEeeecCCC--cc-ceeec
Confidence            4677777788888888421  1112222221     11122122111111  111235899999999976  22 2556 


Q ss_pred             ----------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           99 ----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        99 ----------~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                                |+++.|.+|++++|+||.|||||||++.|+..+.
T Consensus       150 ~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       150 STEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence                      9999999999999999999999999999999873

Members of this family differ in the specificity of RNA binding.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.45  E-value=1e-06  Score=66.94  Aligned_cols=27  Identities=37%  Similarity=0.759  Sum_probs=24.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+..+.|+||+|+||||+++.|+..+.
T Consensus         1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~   27 (148)
T smart00382        1 PGEVILIVGPPGSGKTTLARALARELG   27 (148)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHhccC
Confidence            367899999999999999999999884

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.44  E-value=7.2e-07  Score=79.13  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++.+..|+.++|+|++|||||||++.|+++++
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            567889999999999999999999999999984

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.41  E-value=8.5e-07  Score=81.44  Aligned_cols=95  Identities=21%  Similarity=0.263  Sum_probs=53.3

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (255)
                      +.+|++++|+||||+||||+++.|++...   -..         .+..+.++..+.+..     ...+......+..+++
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp  250 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS  250 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence            57899999999999999999999999641   111         112233466666542     3334455556666664


Q ss_pred             CC--ccHHHHHHHHHhhcccCCccCCCCCcccccch
Q 025293          184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV  217 (255)
Q Consensus       184 ~~--~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv  217 (255)
                      ..  .........+..+.-.....+..  .|+.+|.
T Consensus       251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd  284 (420)
T PRK14721        251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD  284 (420)
T ss_pred             eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence            22  22223333444333222222332  4777764

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.40  E-value=1.2e-06  Score=74.44  Aligned_cols=119  Identities=14%  Similarity=0.061  Sum_probs=63.1

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHH-HHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcC
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~  181 (255)
                      -+++|.++.|.|++|+|||||...++ +.+.               ....+.++....        +..+ .......++
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------------~g~~~~y~~~e~--------~~~~-~~~~~~~~g   76 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK---------------QGKKVYVITTEN--------TSKS-YLKQMESVK   76 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh---------------CCCEEEEEEcCC--------CHHH-HHHHHHHCC
Confidence            47899999999999999999998874 3332               222233233321        1111 111112222


Q ss_pred             CCCCccHHHHHHHHHhhccc-C-CccCCCCCcccccchhhhhhhcc--CCcEEEEcCCCCCCChhHHHHHHHH
Q 025293          182 APWTFNPLLLLNCLKNLRNQ-G-SVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~~-~-~~~~~~lS~G~kqrv~la~~l~~--~~~illlDep~~~LD~~~~~~l~~l  250 (255)
                      +.    ...... ...+.+. . .......+.++++.+.....++.  +|+++++|||++.+|......+.++
T Consensus        77 ~~----~~~~~~-~g~l~i~~~~~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~  144 (234)
T PRK06067         77 ID----ISDFFL-WGYLRIFPLNTEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNF  144 (234)
T ss_pred             CC----hhHHHh-CCCceEEeccccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHH
Confidence            21    111100 0011110 0 01122345677778877777665  8999999999976554444444444

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.35  E-value=1.6e-06  Score=70.70  Aligned_cols=51  Identities=10%  Similarity=0.068  Sum_probs=37.4

Q ss_pred             CccCCCCCccccc------chhhhhhhccCCcEEEEcCCCCCCC---hhHHHHHHHHHHh
Q 025293          203 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~kq------rv~la~~l~~~~~illlDep~~~LD---~~~~~~l~~ll~~  253 (255)
                      +..+..+|+|+++      ......+...+|+++++|||++.+|   ...+..+.+++..
T Consensus        66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~  125 (187)
T cd01124          66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFA  125 (187)
T ss_pred             ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHH
Confidence            3455677999887      4444444566899999999999999   6666666666643

A related protein is found in archaea.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.34  E-value=2.7e-07  Score=84.87  Aligned_cols=36  Identities=28%  Similarity=0.387  Sum_probs=34.4

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++++ |.|.+|++++|+|+||+|||||+++|+|+..
T Consensus       145 aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~  180 (434)
T PRK07196        145 AINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ  180 (434)
T ss_pred             eccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence            66999 9999999999999999999999999999885

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.32  E-value=3.2e-06  Score=72.94  Aligned_cols=113  Identities=19%  Similarity=0.199  Sum_probs=67.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH---HhcCC--C
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P  183 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~---~~~~~--~  183 (255)
                      ++||.|.+||||||+.+.|...+.    ..|         .. ..++..|.|+-+.. ....+......   .++..  |
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~----~~g---------~~-v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P   65 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFA----REG---------IH-PAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP   65 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH----hcC---------Cc-eEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence            589999999999999999998873    111         12 23477787765321 11111101111   12333  5


Q ss_pred             CCccHHHHHHHHHhhcccCCccCCCCCc------------ccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~lS~------------G~kqrv~la~~l~~~~~illlDep~~~L  239 (255)
                      ...+...+.+.+..++.+.....+.|.+            |.+..-.   .+....+|||+++-+.++
T Consensus        66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~---~~~~p~dvIivEGLhg~~  130 (277)
T cd02029          66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWE---DLPEDTDLLFYEGLHGGV  130 (277)
T ss_pred             ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCcc---cccCCCcEEEECCCCccc
Confidence            5566677778888887776555565633            3332111   123578999999987544

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.31  E-value=1.9e-06  Score=67.93  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=21.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++.|.|+||+|||||++.+++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999884

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.31  E-value=3.9e-06  Score=76.00  Aligned_cols=36  Identities=25%  Similarity=0.382  Sum_probs=32.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++++.++.+.+|.+++|+||||+||||++..|++..
T Consensus       126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~  161 (374)
T PRK14722        126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC  161 (374)
T ss_pred             hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            457778889999999999999999999999999875

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.31  E-value=5e-06  Score=80.33  Aligned_cols=116  Identities=20%  Similarity=0.201  Sum_probs=64.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  185 (255)
                      ....++|+||||+|||||+++|.+...   +..|..+     ..... ++.+++..+..   +..   .......+...+
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~---~~~~~~~-----~~~~~-fv~i~~~~l~~---d~~---~i~~~llg~~~~  238 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAK---KLKHTPF-----AEDAP-FVEVDGTTLRW---DPR---EVTNPLLGSVHD  238 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhh---hccCCcc-----cCCCC-eEEEechhccC---CHH---HHhHHhcCCccH
Confidence            456799999999999999999999885   4444200     01112 24454432210   000   000111121111


Q ss_pred             ccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          186 FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       186 ~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .........+..+++.  ....+..+|+|                +|++|| +..||+..+..+.+++++
T Consensus       239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       239 PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            0011122334444432  22334455666                899999 799999999999999864

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.30  E-value=5.5e-07  Score=73.46  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=25.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|++++|+|+||||||||+++|++++.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            599999999999999999999999984

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.29  E-value=4.9e-07  Score=84.81  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=47.7

Q ss_pred             ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +.|+++.|+...    +++++++.+..|+.++|+||||+|||||++.|.|+++   |.+|+
T Consensus       187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~  240 (506)
T PRK09862        187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE  240 (506)
T ss_pred             ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence            458888888733    5599999999999999999999999999999999997   88775

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.29  E-value=4.3e-06  Score=69.45  Aligned_cols=24  Identities=46%  Similarity=0.708  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++.|+||+||||||+++.|++.+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            688999999999999999998884

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.27  E-value=7.3e-06  Score=70.78  Aligned_cols=36  Identities=25%  Similarity=0.491  Sum_probs=31.1

Q ss_pred             cccccccccCCCc-EEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~Ge-ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++..+++.++++. ++.|.||||+|||||++.+...+
T Consensus        31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l   67 (269)
T TIGR03015        31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRL   67 (269)
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhc
Confidence            4477888787765 89999999999999999999887

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.26  E-value=6.1e-07  Score=73.68  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=24.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |++++|+||||||||||+++|++...
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            78999999999999999999999873

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.25  E-value=9.6e-07  Score=81.25  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=48.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +.++.++++..|...   +.+++++ |.+.+|++++|+|+||+|||||+++|+++..   ++.|.
T Consensus       128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~v  185 (433)
T PRK07594        128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNV  185 (433)
T ss_pred             CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEE
Confidence            467888899888542   2266999 9999999999999999999999999999886   66553

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.24  E-value=2.4e-06  Score=83.32  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=33.3

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++++.++.+.+|++++|+||||+||||++..|++.+.
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~  210 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV  210 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH
Confidence            4477888888899999999999999999999999874

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.24  E-value=1.1e-06  Score=78.18  Aligned_cols=41  Identities=24%  Similarity=0.315  Sum_probs=36.7

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +++++ +.+.+|++++|+|+||+|||||+++|+|...   |+.|.
T Consensus        59 aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v   99 (326)
T cd01136          59 AIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV   99 (326)
T ss_pred             EEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence            66999 9999999999999999999999999999986   55443

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.17  E-value=1.2e-06  Score=83.70  Aligned_cols=49  Identities=22%  Similarity=0.310  Sum_probs=44.0

Q ss_pred             cCCCCCcccccchhhhhhhc----------cCCcEEEEcCCC-CCCChhHHHHHHHHHHh
Q 025293          205 YAPSFDHGVGDPVEDDILVG----------LQHKVVIVDGNY-LFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       205 ~~~~lS~G~kqrv~la~~l~----------~~~~illlDep~-~~LD~~~~~~l~~ll~~  253 (255)
                      .+..||+||+||+++|++++          .+|+++|+|||| .+||+..+..+.++|.+
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~  524 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS  524 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence            44689999999999999887          589999999999 68999999999998875

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.17  E-value=1.2e-06  Score=80.95  Aligned_cols=40  Identities=28%  Similarity=0.365  Sum_probs=36.1

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      +++++ |.+.+|++++|+|+||+|||||+++|+|+..   |+.|
T Consensus       148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~g  187 (438)
T PRK07721        148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLN  187 (438)
T ss_pred             hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeE
Confidence            56999 9999999999999999999999999999985   5544

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.15  E-value=1.8e-06  Score=71.63  Aligned_cols=27  Identities=41%  Similarity=0.614  Sum_probs=25.8

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++|++++|+||+|||||||+++|++.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            589999999999999999999999987

>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase

Probab=98.14  E-value=2.3e-06  Score=78.88  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=37.1

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +++++ |.+.+|++++|+|+||+|||||+++|++...   |+.|.
T Consensus       135 ~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~---~~~~v  175 (422)
T TIGR02546       135 AIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGAS---ADVNV  175 (422)
T ss_pred             eehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence            56999 9999999999999999999999999999986   66554

>PRK15453 phosphoribulokinase; Provisional

Probab=98.13  E-value=1.3e-05  Score=69.77  Aligned_cols=118  Identities=17%  Similarity=0.134  Sum_probs=63.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCC-CccCCcccChHHH-HH--hcC
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY-LSQLDAMEDPKEA-HA--RRG  181 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~-~~~l~~~~~~~~~-~~--~~~  181 (255)
                      +.-++||.|.+||||||+.+.|+..+.    ..|          ....++..|+|+-+ ..++..  ..+.. +.  ++.
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~----~~~----------~~~~vi~~D~yh~ydr~~~~~--~~~~~~r~g~nfd   67 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFR----REN----------INAAVVEGDSFHRYTRPEMKA--AIAKARAAGRHFS   67 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHh----hcC----------CCeEEEecccccccChhhHhh--hhHHHHhcCCCCC
Confidence            456899999999999999999998773    111          11234677777642 111111  00111 11  222


Q ss_pred             C--CCCccHHHHHHHHHhhcccCCccCCCCC--ccc---ccchhh----hhhhccCCcEEEEcCCCCCC
Q 025293          182 A--PWTFNPLLLLNCLKNLRNQGSVYAPSFD--HGV---GDPVED----DILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       182 ~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS--~G~---kqrv~l----a~~l~~~~~illlDep~~~L  239 (255)
                      .  +...+...+.+.++.++.......+.|.  ..+   ..+..-    -..+....+|||+++.+.+.
T Consensus        68 hf~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~  136 (290)
T PRK15453         68 HFGPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGV  136 (290)
T ss_pred             CCCCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccc
Confidence            3  4555666677777777654332223332  111   111100    01123468999999987764

>PRK07667 uridine kinase; Provisional

Probab=98.12  E-value=5.3e-06  Score=68.58  Aligned_cols=106  Identities=16%  Similarity=0.311  Sum_probs=59.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC---
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---  183 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~---  183 (255)
                      .-+|||-|+.|||||||.+.|...+.    ..|        . .. .++..+++.....          .+...+..   
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~----~~~--------~-~~-~~i~~Dd~~~~~~----------~~~~~~~~~~~   72 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMK----QEG--------I-PF-HIFHIDDYIVERN----------KRYHTGFEEWY   72 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHH----hCC--------C-cE-EEEEcCcccchhh----------hHHhcCCCchh
Confidence            35899999999999999999999883    222        1 22 2467777643211          00011111   


Q ss_pred             ----CCccHHHHH-HHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293          184 ----WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       184 ----~~~~~~~~~-~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~  237 (255)
                          ..++...+. .++..+........+.++.-.+.+..-... ...++++|+|+|++
T Consensus        73 ~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~-~~~~~vvIvEG~~l  130 (193)
T PRK07667         73 EYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQ-IPIVGVIVIEGVFL  130 (193)
T ss_pred             hhhhhhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccccee-cCCCCEEEEEehhh
Confidence                012222222 345555544444556666555444321111 23569999999995

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.12  E-value=1.7e-06  Score=88.28  Aligned_cols=54  Identities=13%  Similarity=0.126  Sum_probs=48.6

Q ss_pred             cCCccCCCCCcccccchhhhhhhcc--------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          201 QGSVYAPSFDHGVGDPVEDDILVGL--------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       201 ~~~~~~~~lS~G~kqrv~la~~l~~--------~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ....++..|||||+++++++++|+.        +|++||+||||.+||+.....++++|...
T Consensus       942 ~~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l 1003 (1047)
T PRK10246        942 DAVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDAL 1003 (1047)
T ss_pred             CCCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHH
Confidence            3457789999999999999999985        89999999999999999999999988653

>TIGR00634 recN DNA repair protein RecN

Probab=98.12  E-value=2.2e-06  Score=82.05  Aligned_cols=48  Identities=15%  Similarity=0.048  Sum_probs=43.2

Q ss_pred             CCCCcccccchhhhhhhccC----CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          207 PSFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       207 ~~lS~G~kqrv~la~~l~~~----~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+||||++|+++|++++..    |+++|+|||+++||+.....+.++|.+.
T Consensus       439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l  490 (563)
T TIGR00634       439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQL  490 (563)
T ss_pred             hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            36899999999999998874    6999999999999999999999988753

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>TIGR00618 sbcc exonuclease SbcC

Probab=98.12  E-value=2e-06  Score=87.94  Aligned_cols=53  Identities=11%  Similarity=0.105  Sum_probs=47.8

Q ss_pred             CCccCCCCCcccccchhhhhhhcc----------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          202 GSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       202 ~~~~~~~lS~G~kqrv~la~~l~~----------~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...++..|||||++|+++|++|+.          +|++||+||||.+||+.....++++|...
T Consensus       944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l 1006 (1042)
T TIGR00618       944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAI 1006 (1042)
T ss_pred             CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            456788999999999999999975          79999999999999999999999998753

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK08149 ATP synthase SpaL; Validated

Probab=98.11  E-value=1.7e-06  Score=79.58  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=33.9

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus       141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~  176 (428)
T PRK08149        141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE  176 (428)
T ss_pred             EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence            66999 9999999999999999999999999999875

>TIGR01026 fliI_yscN ATPase FliI/YscN family

Probab=98.11  E-value=3e-06  Score=78.49  Aligned_cols=36  Identities=28%  Similarity=0.404  Sum_probs=33.8

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++++ |.+.+|++++|+|+||+|||||+++|++...
T Consensus       153 ~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~  188 (440)
T TIGR01026       153 SIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTE  188 (440)
T ss_pred             eeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            56888 9999999999999999999999999999885

This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.11  E-value=2e-05  Score=67.29  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.+..|+||.|+|||||+-.++--.
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~v   25 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAM   25 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHH
Confidence            6788999999999999998886544

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK09099 type III secretion system ATPase; Provisional

Probab=98.10  E-value=3.5e-06  Score=77.84  Aligned_cols=41  Identities=24%  Similarity=0.314  Sum_probs=36.8

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +++++ +.+.+|++++|+|+||+|||||+++|++...   ++.|.
T Consensus       153 ~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~---~d~~v  193 (441)
T PRK09099        153 IVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQ---CDVNV  193 (441)
T ss_pred             eccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCeEE
Confidence            66999 9999999999999999999999999999885   55554

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.07  E-value=2.7e-05  Score=69.40  Aligned_cols=29  Identities=17%  Similarity=0.340  Sum_probs=26.7

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      -.+|++++|+||||+||||++..|++.+.
T Consensus       111 ~~~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        111 EKKPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            35799999999999999999999999985

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.06  E-value=3.4e-06  Score=68.57  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=24.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |++++|+||||||||||++.|++.+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            67899999999999999999999873

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK05688 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=2.6e-06  Score=78.72  Aligned_cols=36  Identities=28%  Similarity=0.331  Sum_probs=33.7

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++++ |.+.+|++++|+|+||+|||||+++|+|+..
T Consensus       158 aID~l-~~I~~GqrigI~G~sG~GKSTLl~~I~g~~~  193 (451)
T PRK05688        158 SINGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRFTE  193 (451)
T ss_pred             eecce-EEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            66888 9999999999999999999999999999874

>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI

Probab=98.06  E-value=4.1e-06  Score=76.98  Aligned_cols=55  Identities=18%  Similarity=0.157  Sum_probs=41.7

Q ss_pred             EecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        79 ~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +-..++..+...   +.++ |.+|.+.+|++++|+|+||+|||||+++|+++..   |+.|.
T Consensus       116 ~R~~i~~~l~tG---i~ai-D~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~---~~~gv  170 (418)
T TIGR03498       116 SRARVGEPLDTG---VRVI-DTFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTD---ADVVV  170 (418)
T ss_pred             hccCcccccCCc---cEEE-eeeccccCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence            334455555432   2233 4699999999999999999999999999999986   66553

Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.

>PRK08972 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=2.6e-06  Score=78.37  Aligned_cols=36  Identities=28%  Similarity=0.357  Sum_probs=32.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++.+ +.+.+|++++|+|+||+|||||+++|++...
T Consensus       152 aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~  187 (444)
T PRK08972        152 AINAM-LTVGKGQRMGLFAGSGVGKSVLLGMMTRGTT  187 (444)
T ss_pred             eecce-EEEcCCCEEEEECCCCCChhHHHHHhccCCC
Confidence            45666 9999999999999999999999999998763

>PRK10869 recombination and repair protein; Provisional

Probab=98.06  E-value=3.1e-06  Score=80.76  Aligned_cols=47  Identities=15%  Similarity=0.046  Sum_probs=42.9

Q ss_pred             CCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       208 ~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+||||++|+++|++++.    +|+++|+|||+++||......+.++|.+.
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l  480 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQL  480 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            479999999999999986    58999999999999999999999988754

>PRK05922 type III secretion system ATPase; Validated

Probab=98.05  E-value=3e-06  Score=77.99  Aligned_cols=41  Identities=20%  Similarity=0.357  Sum_probs=35.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +++.+ +.+.+|++++|+|+||+|||||+++|++...   ++.|.
T Consensus       147 ~ID~l-l~I~~GqrigI~G~nG~GKSTLL~~Ia~~~~---~d~gv  187 (434)
T PRK05922        147 AIDAF-LTLGKGQRIGVFSEPGSGKSSLLSTIAKGSK---STINV  187 (434)
T ss_pred             eecce-EEEcCCcEEEEECCCCCChHHHHHHHhccCC---CCceE
Confidence            44665 9999999999999999999999999999875   66554

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.05  E-value=2.9e-06  Score=68.95  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=23.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |++++|+||||||||||++.|++..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccC
Confidence            7899999999999999999999976

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=98.04  E-value=3.3e-06  Score=69.18  Aligned_cols=34  Identities=24%  Similarity=0.386  Sum_probs=28.1

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++++++.+| +.+|+||||+||||++.+|.-.+.
T Consensus        11 ~~~~i~f~~g-~~vi~G~Ng~GKStil~ai~~~L~   44 (202)
T PF13476_consen   11 KDLEIDFSPG-LNVIYGPNGSGKSTILEAIRYALG   44 (202)
T ss_dssp             EEEEEE--SE-EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cceEEEcCCC-cEEEECCCCCCHHHHHHHHHHHHc
Confidence            5666777776 999999999999999999998885

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
3c8u_A	208	Crystal Structure Of Putative Fructose Transport Sy		4e-12
2ga8_A	359	Crystal Structure Of Yfh7 From Saccharomyces Cerevi		2e-10

>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           + +V L+G PG+GKSTL+  +           A++  +Q  P   A V+P DGFHL    
Sbjct: 22  RQLVALSGAPGSGKSTLSNPL-----------AAALSAQGLP---AEVVPXDGFHLD--- 64
Query: 167 LDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQ 226
            + + +P+    R+GAP TF              Q  V  P FD      +     VG +
Sbjct: 65  -NRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE 123
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFD 252
            +V I++GNYL  D   W+D+++++D
Sbjct: 124 CRVAIIEGNYLLFDAPGWRDLTAIWD 149

>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF                       
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	8e-48
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	2e-43
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	4e-07
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	1e-28
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	9e-27
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	9e-27
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	1e-17
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	2e-12
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	2e-12
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	2e-10
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	3e-10
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	3e-09
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	5e-05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	6e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	7e-05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	1e-04
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	3e-04

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score =  156 bits (396), Expect = 8e-48
 Identities = 50/170 (29%), Positives = 77/170 (45%), Gaps = 20/170 (11%)

Query: 86  VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145
              AL Q +L    L      + +V L+G PG+GKSTL+  +   ++             
Sbjct: 3   TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP-------- 52

Query: 146 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 205
                 A V+PMDGFHL    L+    P+    R+GAP TF+          L++Q  V 
Sbjct: 53  ------AEVVPMDGFHLDNRLLE----PRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102

Query: 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            P FD      +     VG + +V I++GNYL  D   W+D+++++D   
Sbjct: 103 YPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSI 152

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score =  149 bits (377), Expect = 2e-43
 Identities = 50/242 (20%), Positives = 82/242 (33%), Gaps = 40/242 (16%)

Query: 43  RRNANAQPVFGKTRSLVQNKTSLKVLCSQRREIPVVEARCMDEVYDALAQRLLPTSALAS 102
                 +        +    +   +  ++  E+   +    D V D   Q   P    A 
Sbjct: 58  EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114

Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
             N +    +    G   +   A V   +N     + S         ++A ++PMDGFHL
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVPMDGFHL 166

Query: 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------------------- 201
               LD  +DP+ AH RRG+P TF+    L   K L                        
Sbjct: 167 SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKL 226

Query: 202 --------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
                     ++ P F+H + DP  D   +    ++VI++G YL  D   WK +     +
Sbjct: 227 SKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLAD 286

Query: 254 KW 255
             
Sbjct: 287 TG 288

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 87  YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146
              LA  +L         N +  V L G PG+GKST+A E+ + IN+ +    S   + +
Sbjct: 4   THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63

Query: 147 KP--PDVATVLPMDGFH-LYLSQLDAMED 172
           +        V  +D    L  +++  M +
Sbjct: 64  EVNDRLKPMVNLVDSLKTLQPNKVAEMIE 92

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score =  109 bits (273), Expect = 1e-28
 Identities = 31/179 (17%), Positives = 63/179 (35%), Gaps = 26/179 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y +   R           N +    I+ +AG    GKST A  +   +++    +     
Sbjct: 57  YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR---- 112

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     ++  DGF      L      +    ++G P +++   L+  + +L++   
Sbjct: 113 --------VELITTDGFLHPNQVLKE----RGLMKKKGFPESYDMHRLVKFVSDLKSGVP 160

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEKW 255
           +V AP + H + D + D     +Q  ++I++G  +               VS   D   
Sbjct: 161 NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 219

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score =  104 bits (261), Expect = 9e-27
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%)

Query: 92  QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 151
              L       +  V  I+G+AG    GKST A  +   + +                  
Sbjct: 75  AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------ 122

Query: 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFD 210
             ++  DGF    ++L      +    R+G P ++N   L+  + ++++      AP + 
Sbjct: 123 VDLVTTDGFLYPNAELQR----RNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYS 178

Query: 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           H   D +     V     ++I++G  +   G     VS +FD   
Sbjct: 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGP-TLMVSDLFDFSL 222

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score =  104 bits (261), Expect = 9e-27
 Identities = 37/179 (20%), Positives = 65/179 (36%), Gaps = 26/179 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y    Q L   +             I+G+AG    GKST +  +   +++          
Sbjct: 69  YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---- 124

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     V+  DGF    ++L+     +    R+G P +++   LL  L  +++ Q 
Sbjct: 125 --------VEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEKW 255
           +V  P + H   D V     +  Q  +VI++G  +   G       +   VS  FD   
Sbjct: 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSL 231

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 33/175 (18%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS----- 52

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLR 199
                      V  MD   +  ++      E+  E +        ++   L     + L+
Sbjct: 53  ---------VCVFHMDDHIVERAKRYHTGNEEWFEYY-----YLQWDVEWLTHQLFRQLK 98

Query: 200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
               +  P +DH      +  + +     +++++G +L       K+    FD  
Sbjct: 99  ASHQLTLPFYDHETDTHSKRTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFV 147

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 19/148 (12%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKST+  +++  + +   +         +      +L  D F+  L+   
Sbjct: 27  LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTA-- 75

Query: 169 AMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             +  K    +     P  F+  L+   LKN+    +V  P++D      + +  +V   
Sbjct: 76  -EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-P 133

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
             VV+ +G  +F      +++  MF  +
Sbjct: 134 ADVVLFEGILVFYS----QEIRDMFHLR 157

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 64.1 bits (156), Expect = 2e-12
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +         +          +L  D F+  L+   
Sbjct: 24  LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
                 +       P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 75  -KAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 132

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VV+ +G   F      ++V  +F  K
Sbjct: 133 VVLFEGILAFYS----QEVRDLFQMK 154

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 61.0 bits (148), Expect = 2e-11
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 35/146 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G++G   +GK+TLA    + + K  P                +V+  D F    S++ 
Sbjct: 23  IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEI- 63

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E  K    +       N   +++ +            S D    +             
Sbjct: 64  --ETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEE----------IP 111

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           ++I++G  LF      K + ++++  
Sbjct: 112 ILIIEGFLLFNY----KPLDTIWNRS 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 2e-10
 Identities = 46/280 (16%), Positives = 77/280 (27%), Gaps = 77/280 (27%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHHGFLSFSWIRRNANAQPV--FGKTRSL 58
            D   +   P++ LS    +              G L   W   +   + V  F +   L
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87

Query: 59  VQN----KTSLKVLCSQRREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
             N     + +K    Q   +  +     D +Y      A+    RL P   L      +
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
                V + G  G+GK+ +A +V             S+  Q K            F ++ 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL-----------SYKVQCKMD----------FKIF- 185

Query: 165 SQLDAMEDPKEAHARRGAPW-TFN----PLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVE 218
                              W        P  +L  L+ L  Q    +    DH     + 
Sbjct: 186 -------------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 219 -DDILVGLQHKVVIVDGNY----LFLDGGVW-KDVSSMFD 252
              I   L+   ++    Y    L L   V      + F+
Sbjct: 227 IHSIQAELRR--LLKSKPYENCLLVLL-NVQNAKAWNAFN 263

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 35/151 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G+AG   +GK+TLA    + +       A +   +V       +LPMD ++  L  L 
Sbjct: 8   VIGIAGGTASGKTTLA----QAL-------ARTLGERV------ALLPMDHYYKDLGHLP 50

Query: 169 AMEDPKEAHARRG-----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223
                      R       P  F+  L L   + L     V  P +D            V
Sbjct: 51  --------LEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102

Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
                VVI++G  +       K++  + D K
Sbjct: 103 R-PAPVVILEGILVLYP----KELRDLMDLK 128

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 58.5 bits (141), Expect = 3e-10
 Identities = 25/165 (15%), Positives = 50/165 (30%), Gaps = 30/165 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST    V    ++I+ ++             A  +  D FH + 
Sbjct: 3   KKHPIISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFN 48

Query: 165 SQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
                 E  +   A       F+        L    +     G     ++ H   +    
Sbjct: 49  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 108

Query: 220 DILVGL---------QHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            +  G             ++  +G +  +      +++ + D K 
Sbjct: 109 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLKI 152

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score = 55.4 bits (132), Expect = 3e-09
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
            +  +GP G+GKS  + ++   + + +  + S                +D F+L      
Sbjct: 33  FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81

Query: 169 AMEDPKEAH---ARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 219
            + +  + +     RG P T +  LL   L  + N      Q +V  P +D        D
Sbjct: 82  KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        +
Sbjct: 26  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   +
Sbjct: 25  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           K +  + GP G GKST    +  +++ 
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDN 28

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I +VE+      +   AQ+LL    L  +    H VG+ G PG GKST    +   +
Sbjct: 49  RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
              +   +               +   VGL+GPPGAGKST      + +
Sbjct: 50  AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	99.98
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	99.98
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	99.98
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	99.98
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.97
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	99.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.97
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.97
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.96
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.95
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.93
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.92
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.92
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.91
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.9
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.87
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.86
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.86
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.84
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.83
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.83
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.83
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.82
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.81
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.81
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.79
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.78
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.76
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.71
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.71
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.7
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.69
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.68
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.65
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.65
2og2_A	359	Putative signal recognition particle receptor; nuc	99.64
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.64
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.62
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.6
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.59
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.59
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.57
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.57
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.57
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.57
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.55
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.55
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.54
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.54
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.53
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.53
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.52
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.51
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.51
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.5
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.5
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.49
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.48
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.48
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.47
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.44
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.42
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.39
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.37
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.36
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.35
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.34
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.34
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.32
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.28
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.28
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.26
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.24
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.21
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.2
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.19
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.17
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.16
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.16
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.16
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.15
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.14
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.12
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.12
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.11
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.09
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.08
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	99.04
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	99.01
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.0
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.98
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.98
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.96
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.96
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.91
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.91
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.9
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.9
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.82
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.82
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.79
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.78
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.76
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.75
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.73
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.72
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.7
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.7
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.7
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.65
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.64
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.64
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.62
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.61
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.59
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.57
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.55
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.54
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.54
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.53
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.49
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.48
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.47
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	98.45
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.45
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.44
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.44
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.42
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.41
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.4
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.35
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.33
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.33
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.33
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.33
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.29
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.28
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.28
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.24
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.23
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.22
3ice_A	422	Transcription termination factor RHO; transcriptio	98.21
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.2
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.16
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	98.14
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.11
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.1
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.02
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	98.01
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.99
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.98
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.98
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.98
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.95
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.93
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.92
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	97.89
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.86
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.85
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.83
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.83
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.82
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.81
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.81
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.8
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.78
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.77
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.76
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.74
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.73
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.73
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.71
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.68
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.68
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.65
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.63
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.63
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.6
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.59
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.54
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.51
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.5
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.49
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.48
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.46
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.46
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.43
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.4
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.4
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.34
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.34
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.34
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.34
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.34
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.33
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.32
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.32
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.32
1via_A	175	Shikimate kinase; structural genomics, transferase	97.31
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.31
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.27
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.25
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.23
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.23
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.21
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.2
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.19
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.19
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.19
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.18
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.17
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.15
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.15
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.15
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.15
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.13
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	97.13
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.11
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.09
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	97.06
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.05
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.04
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.02
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.01
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.0
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.0
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.0
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.93
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.92
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	96.92
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.9
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.89
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.88
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.88
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.87
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.87
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.86
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.85
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.85
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.84
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.84
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.83
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.82
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.82
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	96.81
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.81
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.8
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.79
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.79
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.78
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.77
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.76
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.76
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.75
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.75
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.74
3bos_A	242	Putative DNA replication factor; P-loop containing	96.73
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.73
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.72
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.72
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.72
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.71
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.71
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.71
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.7
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.69
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.69
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.65
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.65
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.65
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.65
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.64
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.64
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.64
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.63
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.63
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.62
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.62
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.62
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.61
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.61
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.6
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.6
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.6
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.6
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.6
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.59
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.59
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.59
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.58
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.58
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.57
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.57
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.56
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.56
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.56
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.55
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.55
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.53
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.53
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.53
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.52
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.52
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.52
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.5
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.5
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.5
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.5
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.5
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.49
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.49
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.49
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.49
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.48
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.48
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.48
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.48
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.48
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.47
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.47
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.46
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.46
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.45
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.45
2z43_A	324	DNA repair and recombination protein RADA; archaea	96.45
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.45
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.44
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.43
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.43
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.42
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.41
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.4
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.4
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.4
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.4
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.39
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.39
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.39
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.37
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.37
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.37
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.36
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.36
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.36
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.36
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.35
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.34
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.34
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.33
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.33
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.33
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.33
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.32
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.31
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.3
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.3
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.3
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.29
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.29
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.28
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.28
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.28
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.28
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.24
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.23
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.22
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.19
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.19
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.19
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.19
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.18
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.17
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	96.17
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.15
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.15
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.15
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	96.15
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	96.14
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	96.12
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	96.12
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	96.12
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	96.12
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.12
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	96.12
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.09
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.09
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.09
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	96.09
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.08
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	96.07
3llu_A	196	RAS-related GTP-binding protein C; structural geno	96.06
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	96.05
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	96.02
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	96.0
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.98
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.96
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.96
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.96
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.95
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.94
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.93
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.93
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.91
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.86
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.83
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.81
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.8
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.74
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.72
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.69
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.66
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.64
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.63
3pvs_A	447	Replication-associated recombination protein A; ma	95.62
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.58
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.53
3l0o_A	427	Transcription termination factor RHO; helicase, RH	95.53
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.53
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.52
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	95.52
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.51
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.5
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.48
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.44
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.41
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	95.31
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	95.26
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.24
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.24
1wxq_A	397	GTP-binding protein; structural genomics, riken st	95.22
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	95.2
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.2
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.18
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.18
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.14
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.13
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.13
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.12
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.12
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.07
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.05
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.05
2qgz_A	308	Helicase loader, putative primosome component; str	95.01
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.97
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	94.97
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	94.95
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.94
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	94.82
1xp8_A	366	RECA protein, recombinase A; recombination, radior	94.81
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	94.79
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	94.74
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	94.74

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=1e-37  Score=279.09  Aligned_cols=174  Identities=17%  Similarity=0.149  Sum_probs=138.8

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      ++||+++||+|.|++....+.+|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...      
T Consensus        22 ~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~~   98 (366)
T 3tui_C           22 KHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSES   98 (366)
T ss_dssp             -CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCHH
T ss_pred             CceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            4689999999999753222336799999999999999999999999999999999998   99999 4554321      


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                           +..+|+ +.++.. +. ..+++.+++.+.....+.+.......+.++++.+++.  .+.++..|||||||||+||
T Consensus        99 ~~~~~r~~Ig~-v~Q~~~-l~-~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIA  175 (366)
T 3tui_C           99 ELTKARRQIGM-IFQHFN-LL-SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIA  175 (366)
T ss_dssp             HHHHHHTTEEE-ECSSCC-CC-TTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHH
T ss_pred             HHHHHhCcEEE-EeCCCc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence                 134676 554432 22 2368888887776665554333345677888888876  5688999999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+.+|++||+||||++||+..+..+.++|.+.
T Consensus       176 rAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l  209 (366)
T 3tui_C          176 RALASNPKVLLCDQATSALDPATTRSILELLKDI  209 (366)
T ss_dssp             HHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=1.6e-37  Score=261.91  Aligned_cols=170  Identities=16%  Similarity=0.092  Sum_probs=132.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      +++|+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++... .    
T Consensus         2 ~~~l~~~~l~~~y~~--~~--~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (224)
T 2pcj_A            2 AEILRAENIKKVIRG--YE--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK   74 (224)
T ss_dssp             CEEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred             CcEEEEEeEEEEECC--Ee--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence            357999999999987  34  5599999999999999999999999999999999998   99999 4544321 1    


Q ss_pred             -------CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       149 -------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                             ..+|+ +.++...+  ..+++.+++.+.....+.........+.++++.+++.  .+.++..||||||||+++
T Consensus        75 ~~~~~~~~~i~~-v~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (224)
T 2pcj_A           75 ELSLLRNRKLGF-VFQFHYLI--PELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI  151 (224)
T ss_dssp             HHHHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred             HHHHHHhCcEEE-EecCcccC--CCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence                   12455 44433221  2357777776654444432222234567888888875  457788999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|+.+|++||+||||++||+.++..+.++|.+.
T Consensus       152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l  186 (224)
T 2pcj_A          152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLKI  186 (224)
T ss_dssp             HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998653

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.8e-37  Score=279.07  Aligned_cols=170  Identities=14%  Similarity=0.111  Sum_probs=138.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.|++.  .  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 M~~l~~~~l~~~yg~~--~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~   73 (381)
T 3rlf_A            1 MASVQLQNVTKAWGEV--V--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA   73 (381)
T ss_dssp             -CCEEEEEEEEEETTE--E--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred             CCEEEEEeEEEEECCE--E--EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence            4579999999999873  3  5699999999999999999999999999999999998   99999 4554321      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|. +.++.. ++ +.+++.+++.+.....+.+.......+.++++.+++.  .++++.+|||||||||+||+||+.
T Consensus        74 ~r~ig~-VfQ~~~-l~-p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~  150 (381)
T 3rlf_A           74 ERGVGM-VFQSYA-LY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (381)
T ss_dssp             GSCEEE-ECTTCC-CC-TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HCCEEE-EecCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence            224665 555443 22 2378888888877666654433445677888888876  568889999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|||||||++||+..+.+++++|.+.
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~l  179 (381)
T 3rlf_A          151 EPSVFLLDEPLSNLDAALRVQMRIEISRL  179 (381)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999988653

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=1.2e-37  Score=278.22  Aligned_cols=168  Identities=11%  Similarity=0.160  Sum_probs=132.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||+|.|++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...       
T Consensus         3 ~~l~i~~ls~~y~~--~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~   75 (359)
T 3fvq_A            3 AALHIGHLSKSFQN--TP--VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL   75 (359)
T ss_dssp             CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred             cEEEEEeEEEEECC--EE--EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            37999999999987  33  5699999999999999999999999999999999998   99999 4544211       


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ...+|. +.+++. ++ +.+++.+++.+.....+.+.......+.++++.+++.  .++++.+|||||||||+||+|
T Consensus        76 ~~~~r~ig~-vfQ~~~-l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA  152 (359)
T 3fvq_A           76 PVRERRLGY-LVQEGV-LF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA  152 (359)
T ss_dssp             CGGGSCCEE-ECTTCC-CC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             chhhCCEEE-EeCCCc-CC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence               134666 555443 22 2367777766544333333333345677888888876  567889999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++|||||||++||+..+.++++.+.+
T Consensus       153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l~~  183 (359)
T 3fvq_A          153 LAPDPELILLDEPFSALDEQLRRQIREDMIA  183 (359)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999876643

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=3.2e-37  Score=261.81  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=130.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------  148 (255)
                      ||+++||++.|++......+|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++... .      
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~   77 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence            58999999999753212225699999999999999999999999999999999998   99999 4554321 1      


Q ss_pred             -----CCeEEEEecCCCCCCCccCCcccChHHHHHhc---CCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccch
Q 025293          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv  217 (255)
                           ..+|+ +.++...+  ..+++.+++.+.....   ..........+.++++.+++.   .+.++..||||||||+
T Consensus        78 ~~~~~~~i~~-v~Q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv  154 (235)
T 3tif_A           78 TKIRRDKIGF-VFQQFNLI--PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV  154 (235)
T ss_dssp             HHHHHHHEEE-ECTTCCCC--TTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred             HHHhhccEEE-EecCCccC--CCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence                 12565 44443222  2257777766544322   111112234566788888875   2677899999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+||+.+|++||+||||++||+..+..+.+++.+.
T Consensus       155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l  191 (235)
T 3tif_A          155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL  191 (235)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998653

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.9e-37  Score=267.54  Aligned_cols=169  Identities=17%  Similarity=0.153  Sum_probs=134.0

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      ++|+++||++.|++. ..  +|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...       
T Consensus         6 ~~l~i~~ls~~y~~~-~~--~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~   79 (275)
T 3gfo_A            6 YILKVEELNYNYSDG-TH--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI   79 (275)
T ss_dssp             EEEEEEEEEEECTTS-CE--EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred             cEEEEEEEEEEECCC-Ce--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence            479999999999752 22  5699999999999999999999999999999999998   99999 4554322       


Q ss_pred             ---CCCeEEEEecCC-CCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhh
Q 025293          148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       148 ---~~~~g~~i~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~  221 (255)
                         ...+|+ +.++. ..++  .+++.+++.+.....+.+.......+.++++.+++.  .+.++..|||||||||+||+
T Consensus        80 ~~~~~~ig~-v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr  156 (275)
T 3gfo_A           80 MKLRESIGI-VFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG  156 (275)
T ss_dssp             HHHHHSEEE-ECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             HHHhCcEEE-EEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence               123666 44432 1222  257777777766555543333344567888888876  46778899999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+.+|++|||||||++||+.++..+.++|.+
T Consensus       157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~  188 (275)
T 3gfo_A          157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE  188 (275)
T ss_dssp             HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=6.6e-37  Score=262.88  Aligned_cols=171  Identities=13%  Similarity=0.103  Sum_probs=132.2

Q ss_pred             cCCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----
Q 025293           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        73 ~~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----  147 (255)
                      ..|.+|+++||++.|++  +.  +|+++||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...    
T Consensus        11 ~~~~~l~i~~l~~~y~~--~~--vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~   83 (256)
T 1vpl_A           11 HHMGAVVVKDLRKRIGK--KE--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEP   83 (256)
T ss_dssp             ---CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCH
T ss_pred             ccCCeEEEEEEEEEECC--EE--EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccH
Confidence            35789999999999986  34  5599999999999999999999999999999999998   99999 4544321    


Q ss_pred             ---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ...+|+ +.++...+  ..+++.+++.+.....+.........+.++++.+++.  .++++..||||||||+++|++
T Consensus        84 ~~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra  160 (256)
T 1vpl_A           84 HEVRKLISY-LPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARA  160 (256)
T ss_dssp             HHHHTTEEE-ECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHH
T ss_pred             HHHhhcEEE-EcCCCCCC--CCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHH
Confidence               123565 44433222  2357777776654433432211223567788888875  457788999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++|||||||++||+.++..+.++|.+
T Consensus       161 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~  191 (256)
T 1vpl_A          161 LMVNPRLAILDEPTSGLDVLNAREVRKILKQ  191 (256)
T ss_dssp             HTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=5.8e-37  Score=264.17  Aligned_cols=170  Identities=15%  Similarity=0.194  Sum_probs=131.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +.+|+++||++.|++  +.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++....     
T Consensus        22 ~~~l~i~~l~~~y~~--~~--vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~   94 (263)
T 2olj_A           22 LQMIDVHQLKKSFGS--LE--VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN   94 (263)
T ss_dssp             CCSEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred             hheEEEEeEEEEECC--EE--EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence            357999999999986  34  5599999999999999999999999999999999998   99999 45543211     


Q ss_pred             -----CCeEEEEecCCCCCCCccCCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                           ..+|+ +.++.. ++ ..+++.+++.+.. ...+.........+.++++.+++.  .+.++..||||||||+++|
T Consensus        95 ~~~~~~~i~~-v~Q~~~-l~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA  171 (263)
T 2olj_A           95 LNKVREEVGM-VFQRFN-LF-PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA  171 (263)
T ss_dssp             HHHHHHHEEE-ECSSCC-CC-TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHhCcEEE-EeCCCc-CC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence                 12555 444432 21 2357777776643 223332212234567788888875  4677889999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l  205 (263)
T 2olj_A          172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQL  205 (263)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998653

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.3e-36  Score=272.48  Aligned_cols=170  Identities=15%  Similarity=0.137  Sum_probs=136.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.|++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 m~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   73 (362)
T 2it1_A            1 MVEIKLENIVKKFGN--FT--ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK   73 (362)
T ss_dssp             CCCEEEEEEEEESSS--SE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             CcEEEEEeEEEEECC--EE--EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence            346999999999976  33  5599999999999999999999999999999999998   99999 4554321      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +.++...+  +.+++.+++.+.....+.+.......+.++++.+++.  .++++..|||||||||++|++|+.
T Consensus        74 ~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  150 (362)
T 2it1_A           74 DRNVGL-VFQNWALY--PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK  150 (362)
T ss_dssp             GTTEEE-ECTTCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             HCcEEE-EecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence            134666 55544322  2368888887766554443322334567888888876  467888999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +|++|||||||++||+..+..++++|.+.
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l  179 (362)
T 2it1_A          151 EPEVLLLDEPLSNLDALLRLEVRAELKRL  179 (362)
T ss_dssp             CCSEEEEESGGGGSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999998653

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=1.6e-36  Score=270.99  Aligned_cols=170  Identities=14%  Similarity=0.226  Sum_probs=136.5

Q ss_pred             CCCeEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC----
Q 025293           74 EIPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~----  147 (255)
                      +..+|+++||+|.| ++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...    
T Consensus        11 ~~~~l~~~~l~~~y~g~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~   83 (355)
T 1z47_A           11 GSMTIEFVGVEKIYPGG--AR--SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLP   83 (355)
T ss_dssp             CCEEEEEEEEEECCTTS--TT--CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCC
T ss_pred             CCceEEEEEEEEEEcCC--CE--EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCC
Confidence            45689999999999 76  33  5699999999999999999999999999999999998   99999 4554321    


Q ss_pred             --CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                        ...+|+ +.++...+  +.+++.+++.+.....+.+.......+.++++.+++.  .++++.+|||||||||+||++|
T Consensus        84 ~~~r~ig~-v~Q~~~l~--~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL  160 (355)
T 1z47_A           84 PQKRNVGL-VFQNYALF--QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARAL  160 (355)
T ss_dssp             GGGSSEEE-ECGGGCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHH
T ss_pred             hhhCcEEE-EecCcccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence              234666 55544322  2368888887766554443222334567888888875  5678899999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++|||||||++||+..+..++++|.+
T Consensus       161 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  190 (355)
T 1z47_A          161 APRPQVLLFDEPFAAIDTQIRRELRTFVRQ  190 (355)
T ss_dssp             TTCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998865

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=8.3e-37  Score=273.38  Aligned_cols=169  Identities=15%  Similarity=0.144  Sum_probs=132.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.|++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         1 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   73 (359)
T 2yyz_A            1 MPSIRVVNLKKYFGK--VK--AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK   73 (359)
T ss_dssp             -CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             CcEEEEEEEEEEECC--EE--EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence            347999999999986  33  5599999999999999999999999999999999998   99999 4554321      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +.++...+  +.+++.+++.+.....+.+.......+.++++.+++.  .++++.+|||||||||++|++|+.
T Consensus        74 ~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~  150 (359)
T 2yyz_A           74 YREVGM-VFQNYALY--PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK  150 (359)
T ss_dssp             GTTEEE-ECSSCCCC--TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             hCcEEE-EecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            234666 55543322  2367777766543222222112234567888888875  567889999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..+..++++|.+
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (359)
T 2yyz_A          151 QPKVLLFDEPLSNLDANLRMIMRAEIKH  178 (359)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998865

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=9.9e-37  Score=262.06  Aligned_cols=170  Identities=14%  Similarity=0.106  Sum_probs=128.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      +++|+++||++.|++  +.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++... .    
T Consensus         5 ~~~l~i~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~   77 (257)
T 1g6h_A            5 MEILRTENIVKYFGE--FK--ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   77 (257)
T ss_dssp             CEEEEEEEEEEEETT--EE--EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             CcEEEEeeeEEEECC--Ee--eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            458999999999987  33  5599999999999999999999999999999999998   99999 4554321 1    


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHh--cC-----------CCCCccHHHHHHHHHhhccc--CCccCCCC
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQ--GSVYAPSF  209 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~l~~l~~~--~~~~~~~l  209 (255)
                          ..+|+ +.++.. ++ ..+++.+++.+....  .+           .........+.++++.+++.  .+.++..|
T Consensus        78 ~~~~~~i~~-v~q~~~-l~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  154 (257)
T 1g6h_A           78 ELYHYGIVR-TFQTPQ-PL-KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  154 (257)
T ss_dssp             HHHHHTEEE-CCCCCG-GG-GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             HHHhCCEEE-EccCCc-cC-CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence                12454 443322 11 224666655442211  11           11111233567788888875  46778899


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l  199 (257)
T 1g6h_A          155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL  199 (257)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998753

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.4e-36  Score=273.37  Aligned_cols=169  Identities=13%  Similarity=0.095  Sum_probs=135.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-------  146 (255)
                      |.+|+++||+|.|++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++..       
T Consensus         1 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   73 (372)
T 1g29_1            1 MAGVRLVDVWKVFGE--VT--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (372)
T ss_dssp             CEEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCEEEEEeEEEEECC--EE--EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence            447999999999986  33  5599999999999999999999999999999999998   99999 454421       


Q ss_pred             --C---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          147 --K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       147 --~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                        .   ...+|+ +.++...+  +.+++.+++.+.....+.+.......+.++++.+++.  .++++.+|||||||||++
T Consensus        74 ~~~~~~~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval  150 (372)
T 1g29_1           74 IFVPPKDRDIAM-VFQSYALY--PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (372)
T ss_dssp             EECCGGGSSEEE-ECSCCCCC--TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             ccCCHhHCCEEE-EeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence              1   124665 55543322  2368888888766555443322334567888888876  567889999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|+.+|++|||||||++||+..+..++++|.+
T Consensus       151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  184 (372)
T 1g29_1          151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK  184 (372)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998865

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.7e-36  Score=272.61  Aligned_cols=169  Identities=12%  Similarity=0.113  Sum_probs=129.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |.+|+++||+|.|++  +.  +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...      
T Consensus         9 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   81 (372)
T 1v43_A            9 MVEVKLENLTKRFGN--FT--AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   81 (372)
T ss_dssp             CCCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             eeeEEEEEEEEEECC--EE--EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence            557999999999986  33  5599999999999999999999999999999999998   99999 4554321      


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                      ...+|+ +.+++..+  +.+++.+++.+.....+.+.......+.++++.+++.  .++++.+|||||||||++|++|+.
T Consensus        82 ~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  158 (372)
T 1v43_A           82 DRNISM-VFQSYAVW--PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  158 (372)
T ss_dssp             GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             hCcEEE-EecCcccC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            124666 55544322  2367777665532222222222234567888888875  567889999999999999999999


Q ss_pred             CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|||||||++||+..+..++++|.+
T Consensus       159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  186 (372)
T 1v43_A          159 EPDVLLMDEPLSNLDAKLRVAMRAEIKK  186 (372)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999865

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=2.2e-36  Score=260.58  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=130.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++|+++||++.|++  +.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus         5 ~~l~i~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (262)
T 1b0u_A            5 NKLHVIDLHKRYGG--HE--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKD   77 (262)
T ss_dssp             CCEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTT
T ss_pred             ceEEEeeEEEEECC--EE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccccc
Confidence            37999999999986  34  5599999999999999999999999999999999998   99999 45443211      


Q ss_pred             ---------------CCeEEEEecCCCCCCCccCCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccc---CCccCCCC
Q 025293          149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF  209 (255)
Q Consensus       149 ---------------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~l  209 (255)
                                     ..+|+ +.++.. ++ ..+++.+++.+.. ...+.........+.++++.+++.   .+.++..|
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~-v~Q~~~-l~-~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L  154 (262)
T 1b0u_A           78 GQLKVADKNQLRLLRTRLTM-VFQHFN-LW-SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL  154 (262)
T ss_dssp             SSEEESCHHHHHHHHHHEEE-ECSSCC-CC-TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred             ccccccChhhHHHHhcceEE-EecCcc-cC-CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence                           12455 444432 21 2357777776643 222322112234567788888875   46778899


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||||++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~  198 (262)
T 1b0u_A          155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ  198 (262)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999865

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=3e-36  Score=252.20  Aligned_cols=165  Identities=16%  Similarity=0.201  Sum_probs=130.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC---CCCCe
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---KPPDV  151 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~---~~~~~  151 (255)
                      .+|+++||++.|++ .    +|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++..   ....+
T Consensus         9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i   80 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI   80 (214)
T ss_dssp             CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred             ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence            58999999999975 3    6699999999999999999999999999999999998   99999 444421   12235


Q ss_pred             EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-CccCCCCCcccccchhhhhhhccCCcEE
Q 025293          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (255)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~G~kqrv~la~~l~~~~~il  230 (255)
                      ++ +.++...+  ..+++.+++.+.....+. .. ....+.++++.+++.. +.++..||||||||+++|++|+.+|++|
T Consensus        81 ~~-v~q~~~~~--~~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll  155 (214)
T 1sgw_A           81 FF-LPEEIIVP--RKISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY  155 (214)
T ss_dssp             EE-ECSSCCCC--TTSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred             EE-EeCCCcCC--CCCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            55 44433221  225777777665443332 22 2456778888888754 6677899999999999999999999999


Q ss_pred             EEcCCCCCCChhHHHHHHHHHHh
Q 025293          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       231 llDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||||++||+.++..+.+++.+
T Consensus       156 lLDEPts~LD~~~~~~l~~~l~~  178 (214)
T 1sgw_A          156 VLDDPVVAIDEDSKHKVLKSILE  178 (214)
T ss_dssp             EEESTTTTSCTTTHHHHHHHHHH
T ss_pred             EEECCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999865

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=1.2e-36  Score=272.12  Aligned_cols=171  Identities=13%  Similarity=0.150  Sum_probs=133.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------  146 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-------  146 (255)
                      |.+|+++||+|.|++  +...+|+|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++..       
T Consensus         1 M~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   75 (353)
T 1oxx_K            1 MVRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (353)
T ss_dssp             CCCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CcEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence            457999999999986  44013499999999999999999999999999999999998   99999 454421       


Q ss_pred             -C---CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          147 -K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       147 -~---~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                       .   ...+|+ +.++...+  +.+++.+++.+.....+.+.......+.++++.+++.  .++++.+|||||||||++|
T Consensus        76 ~~~~~~r~ig~-v~Q~~~l~--~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA  152 (353)
T 1oxx_K           76 IVPPEDRKIGM-VFQTWALY--PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (353)
T ss_dssp             SSCGGGSCEEE-EETTSCCC--TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             cCChhhCCEEE-EeCCCccC--CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence             1   124565 55544322  2367777776544333332222234567888888876  4678899999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++|+.+|++|||||||++||+..+..++++|.+
T Consensus       153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  185 (353)
T 1oxx_K          153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKE  185 (353)
T ss_dssp             HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999865

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=3.9e-36  Score=259.51  Aligned_cols=168  Identities=14%  Similarity=0.102  Sum_probs=129.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      +++|+++||++.|++  +.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++....     
T Consensus         9 ~~~l~~~~l~~~~~~--~~--vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~   81 (266)
T 4g1u_C            9 VALLEASHLHYHVQQ--QA--LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK   81 (266)
T ss_dssp             CCEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred             cceEEEEeEEEEeCC--ee--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence            468999999999987  34  5599999999999999999999999999999999998   99999 45543221     


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                         ...|+ +.+.....+  .+++.+++.+.....  ........+.++++.+++.  .+.++..||||||||++||++|
T Consensus        82 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL  156 (266)
T 4g1u_C           82 ALARTRAV-MRQYSELAF--PFSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL  156 (266)
T ss_dssp             HHHHHEEE-ECSCCCCCS--CCBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHhheEEE-EecCCccCC--CCCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence               12454 444332211  245555554432211  2223345677888888875  4577889999999999999999


Q ss_pred             cc------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       224 ~~------~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.      +|++||+||||++||+..+..+.++|.+.
T Consensus       157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l  193 (266)
T 4g1u_C          157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQL  193 (266)
T ss_dssp             HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred             hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            99      99999999999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=4.5e-36  Score=260.73  Aligned_cols=170  Identities=12%  Similarity=0.011  Sum_probs=126.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ++|+++||++.|++  +.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus        20 ~~l~~~~l~~~y~~--~~--vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~   92 (279)
T 2ihy_A           20 MLIQLDQIGRMKQG--KT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA   92 (279)
T ss_dssp             EEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred             ceEEEEeEEEEECC--EE--EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence            47999999999987  34  5599999999999999999999999999999999998   99999 45543221      


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHh----cCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchh
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~  218 (255)
                          ..+|+ +.++........+++.+++.+....    .+.........+.++++.+++.  .++++..||||||||++
T Consensus        93 ~~~~~~i~~-v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~  171 (279)
T 2ihy_A           93 ETVRQHIGF-VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM  171 (279)
T ss_dssp             HHHHTTEEE-ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             HHHcCcEEE-EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence                23565 4443221111123555554432100    1111111233466788888875  46778899999999999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~  206 (279)
T 2ihy_A          172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDS  206 (279)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999865

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=1.1e-35  Score=253.04  Aligned_cols=167  Identities=17%  Similarity=0.122  Sum_probs=126.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      ++|+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++... .     
T Consensus         5 ~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (240)
T 1ji0_A            5 IVLEVQSLHVYYGA--IH--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             ceEEEEeEEEEECC--ee--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence            47999999999987  34  5599999999999999999999999999999999998   99999 4554321 1     


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhc-cc--CCccCCCCCcccccchhhhhh
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~-~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                         ..+|+ +.++...+  ..+++.+++.+.. ............+..+++.++ +.  .+.++..||||||||+++|++
T Consensus        78 ~~~~~i~~-v~q~~~l~--~~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra  153 (240)
T 1ji0_A           78 INRMGIAL-VPEGRRIF--PELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA  153 (240)
T ss_dssp             HHHTTEEE-ECSSCCCC--TTSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred             HHhCCEEE-EecCCccC--CCCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence               12565 44433221  2246666554432 111112222334566777774 54  467789999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |+.+|++|||||||++||+.++..+.++|.+
T Consensus       154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~  184 (240)
T 1ji0_A          154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999865

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=1.6e-35  Score=264.09  Aligned_cols=164  Identities=13%  Similarity=0.144  Sum_probs=133.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      ||+++||+|.|++  +   +++|+||+|++||+++|+||||||||||||+|+|+++   |++|+ .+++...      ..
T Consensus         1 ml~~~~l~~~y~~--~---~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r   72 (348)
T 3d31_A            1 MIEIESLSRKWKN--F---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (348)
T ss_dssp             CEEEEEEEEECSS--C---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEECC--E---EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence            4899999999976  4   4599999999999999999999999999999999998   99999 4554321      12


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      .+|+ +.++...+  +.+++.+++.+.....+.+..   ..+.++++.+++.  .++++.+|||||||||++|++|+.+|
T Consensus        73 ~ig~-v~Q~~~l~--~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P  146 (348)
T 3d31_A           73 DIAF-VYQNYSLF--PHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP  146 (348)
T ss_dssp             TCEE-ECTTCCCC--TTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred             cEEE-EecCcccC--CCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3566 55544322  236888888776554443322   5677888988876  46788899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++|||||||++||+..+..++++|.+.
T Consensus       147 ~lLLLDEP~s~LD~~~~~~l~~~l~~l  173 (348)
T 3d31_A          147 KILLLDEPLSALDPRTQENAREMLSVL  173 (348)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999998653

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=2.1e-35  Score=253.14  Aligned_cols=164  Identities=15%  Similarity=0.111  Sum_probs=126.8

Q ss_pred             CeEEecCchheeh-hhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~-~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      ++|+++||++.|+ +  +.  +|+|+||+|++|++++|+||||||||||+|+|+|+++   |++|++..    ...+|+ 
T Consensus         3 ~~l~i~~l~~~y~~~--~~--vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~~-   70 (253)
T 2nq2_C            3 KALSVENLGFYYQAE--NF--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIGF-   70 (253)
T ss_dssp             EEEEEEEEEEEETTT--TE--EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEEE-
T ss_pred             ceEEEeeEEEEeCCC--Ce--EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEEE-
Confidence            3799999999998 5  33  5599999999999999999999999999999999998   99997431    234565 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhc-CC---CCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~-~~---~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      +.++...+.  .+++.+++.+..... +.   ........+.++++.+++.  .+.++..||||||||+++|++|+.+|+
T Consensus        71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  148 (253)
T 2nq2_C           71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK  148 (253)
T ss_dssp             ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred             EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            444332221  246666655432211 11   1112234567788888875  467788999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|||||||++||+.++..+.++|.+
T Consensus       149 lllLDEPts~LD~~~~~~l~~~l~~  173 (253)
T 2nq2_C          149 LILLDEPTSALDLANQDIVLSLLID  173 (253)
T ss_dssp             EEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999865

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=2.1e-35  Score=254.93  Aligned_cols=169  Identities=15%  Similarity=0.138  Sum_probs=128.9

Q ss_pred             eEEecCchheeh-hhh--cccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293           77 VVEARCMDEVYD-ALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        77 ~l~v~~lsk~y~-~~~--~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      ||+++||++.|+ +..  +.  +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++...     
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~--vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~   76 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKK--ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEI   76 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEE--EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHH
T ss_pred             EEEEEEEEEEecCCCccccc--eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHh
Confidence            689999999997 210  12  5699999999999999999999999999999999998   99999 4554321     


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc----CCccCCCCCcccccchhhhhhh
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~----~~~~~~~lS~G~kqrv~la~~l  223 (255)
                      ...+|+ +.++...... .+++.+++.+..... .........+.++++.+++.    .+.++..||||||||+++|++|
T Consensus        77 ~~~i~~-v~q~~~~~~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL  153 (266)
T 2yz2_A           77 RRNIGI-AFQYPEDQFF-AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVI  153 (266)
T ss_dssp             GGGEEE-ECSSGGGGCC-CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHH
T ss_pred             hhhEEE-EeccchhhcC-CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHH
Confidence            123565 4443211111 246666655432221 22223345677888988886    4677889999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.+|++|||||||++||+.++..+.++|.+
T Consensus       154 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~  183 (266)
T 2yz2_A          154 VHEPDILILDEPLVGLDREGKTDLLRIVEK  183 (266)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=2.5e-35  Score=250.85  Aligned_cols=162  Identities=12%  Similarity=0.070  Sum_probs=121.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (255)
                      ||+++||++.|++      +|+|+||+|++ |++||+||||||||||+|+|+|+++   |++|+ .+++...      ..
T Consensus         1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   70 (240)
T 2onk_A            1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence            4789999999975      35999999999 9999999999999999999999998   99999 4444211      12


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      .+|+ +.++.. + ...+++.+++.+.....+.  ......+.++++.+++.  .+.++..||||||||+++|++|+.+|
T Consensus        71 ~i~~-v~q~~~-l-~~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  145 (240)
T 2onk_A           71 GIGF-VPQDYA-L-FPHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP  145 (240)
T ss_dssp             CCBC-CCSSCC-C-CTTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             cEEE-EcCCCc-c-CCCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3444 333221 1 1124555544332111110  11134567788888875  45778899999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++||+||||++||+.++..+.+++.+
T Consensus       146 ~lllLDEPts~LD~~~~~~~~~~l~~  171 (240)
T 2onk_A          146 RLLLLDEPLSAVDLKTKGVLMEELRF  171 (240)
T ss_dssp             SSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999865

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=5e-35  Score=250.49  Aligned_cols=170  Identities=18%  Similarity=0.080  Sum_probs=120.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH--hcccCCCCCc-cCCCCCC-C--
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVK-P--  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl--l~~~~p~~G~-~~~~~~~-~--  148 (255)
                      |++|+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||+|+|+|+  ++   |++|+ .+++... .  
T Consensus         1 M~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~   73 (250)
T 2d2e_A            1 MSQLEIRDLWASIDG--ET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS   73 (250)
T ss_dssp             -CEEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred             CceEEEEeEEEEECC--EE--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence            347999999999986  34  55999999999999999999999999999999998  66   89998 4544321 1  


Q ss_pred             ------CCeEEEEecCCCCCCCccCCcccChHHHHHh-cCCCC--CccHHHHHHHHHhhccc---CCccCCC-CCccccc
Q 025293          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGD  215 (255)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~--~~~~~~~~~~l~~l~~~---~~~~~~~-lS~G~kq  215 (255)
                            ..+++ +.++...+  ..+++.++..+.... .+...  ......+.++++.+++.   .+.++.. |||||||
T Consensus        74 ~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQ  150 (250)
T 2d2e_A           74 PDERARKGLFL-AFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKK  150 (250)
T ss_dssp             HHHHHHTTBCC-CCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHH
T ss_pred             HHHHHhCcEEE-eccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence                  01222 22222111  124555555443321 12111  11123456788888873   4567788 9999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l  189 (250)
T 2d2e_A          151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAM  189 (250)
T ss_dssp             HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=2.8e-34  Score=248.06  Aligned_cols=170  Identities=16%  Similarity=0.095  Sum_probs=123.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh--cccCCCCCc-cCCCCCC-C--
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVK-P--  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll--~~~~p~~G~-~~~~~~~-~--  148 (255)
                      +++|+++||++.|++  +.  +|+|+||+|++||+++|+||||||||||+|+|+|++  +   |++|+ .+++... .  
T Consensus        18 ~~~l~~~~l~~~y~~--~~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~   90 (267)
T 2zu0_C           18 SHMLSIKDLHVSVED--KA--ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS   90 (267)
T ss_dssp             --CEEEEEEEEEETT--EE--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred             CceEEEEeEEEEECC--EE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence            457999999999976  34  559999999999999999999999999999999983  5   88998 4544311 0  


Q ss_pred             ------CCeEEEEecCCCCCCCccCCcccChHHHHH-h---cCCCC---CccHHHHHHHHHhhccc---CCccCC-CCCc
Q 025293          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH  211 (255)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~-~---~~~~~---~~~~~~~~~~l~~l~~~---~~~~~~-~lS~  211 (255)
                            ..+++ +.++...+  ..+++.++...... .   .+...   ......+.++++.+++.   .+.++. .|||
T Consensus        91 ~~~~~~~~i~~-v~Q~~~l~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg  167 (267)
T 2zu0_C           91 PEDRAGEGIFM-AFQYPVEI--PGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG  167 (267)
T ss_dssp             HHHHHHHTEEE-ECSSCCCC--TTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred             HHHHhhCCEEE-EccCcccc--ccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence                  11344 44332221  12455555443221 1   12111   11123466788888874   245665 5999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l  210 (267)
T 2zu0_C          168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSL  210 (267)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998763

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=8.6e-34  Score=244.32  Aligned_cols=162  Identities=16%  Similarity=0.135  Sum_probs=126.2

Q ss_pred             eEEecCchheehhh--hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----C
Q 025293           77 VVEARCMDEVYDAL--AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----P  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~--~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~  148 (255)
                      ||+++||++.|++.  .+.  +|+|+||+|+ |++++|+||||||||||+|+|+|++    |++|+ .+++...     .
T Consensus         1 ml~~~~l~~~y~~~~~~~~--il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~   73 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERF--SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNY   73 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEE--EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCC
T ss_pred             CEEEEEEEEEeCCCCccce--eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHh
Confidence            58999999999751  022  5699999999 9999999999999999999999997    89998 4444211     2


Q ss_pred             CCeE-EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhc
Q 025293          149 PDVA-TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       149 ~~~g-~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                      ..+| + +.++...    .+++.+++.+.....    ......+.++++.+++.   .+.++..||||||||+++|++|+
T Consensus        74 ~~i~~~-v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~  144 (263)
T 2pjz_A           74 IRYSTN-LPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALA  144 (263)
T ss_dssp             TTEEEC-CGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred             hheEEE-eCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence            2345 4 4433221    356767766544322    22345677888888876   46778899999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++|||||||++||+..+..+.++|.+.
T Consensus       145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~  174 (263)
T 2pjz_A          145 SQPEIVGLDEPFENVDAARRHVISRYIKEY  174 (263)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHHHHS
T ss_pred             hCCCEEEEECCccccCHHHHHHHHHHHHHh
Confidence            999999999999999999999999998753

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=99.98  E-value=2.6e-33  Score=239.39  Aligned_cols=161  Identities=15%  Similarity=0.125  Sum_probs=117.7

Q ss_pred             eEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----
Q 025293           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----  148 (255)
Q Consensus        77 ~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----  148 (255)
                      -++++||++.| ++. +.  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++... .     
T Consensus         7 ~~~~~~l~~~y~~~~-~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~~   80 (247)
T 2ff7_A            7 DITFRNIRFRYKPDS-PV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNW   80 (247)
T ss_dssp             EEEEEEEEEESSTTS-CE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHH
T ss_pred             ceeEEEEEEEeCCCC-cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence            47999999999 321 33  5599999999999999999999999999999999998   99999 4554321 1     


Q ss_pred             --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~  213 (255)
                        ..+|+ +.++... +.  .++.+++.+.     .. ......+..+++.+++.             ...++..|||||
T Consensus        81 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq  150 (247)
T 2ff7_A           81 LRRQVGV-VLQDNVL-LN--RSIIDNISLA-----NP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ  150 (247)
T ss_dssp             HHHHEEE-ECSSCCC-TT--SBHHHHHTTT-----CT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred             HHhcEEE-EeCCCcc-cc--ccHHHHHhcc-----CC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence              12454 4443322 11  2444433221     11 12233444555554432             234567999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|++|+.+|++|||||||++||+.++..+.++|.+
T Consensus       151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~  190 (247)
T 2ff7_A          151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK  190 (247)
T ss_dssp             HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=99.98  E-value=1.8e-33  Score=239.01  Aligned_cols=160  Identities=13%  Similarity=0.113  Sum_probs=114.9

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      |.+|+++||++.|++..+.  +|+|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++     .+|+
T Consensus         1 M~~l~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~~   70 (237)
T 2cbz_A            1 MNSITVRNATFTWARSDPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVAY   70 (237)
T ss_dssp             -CCEEEEEEEEESCTTSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEEE
T ss_pred             CCeEEEEEEEEEeCCCCCc--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEEE
Confidence            4579999999999731133  5599999999999999999999999999999999998   89998 4443     3555


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHH---HHhhccc-------CCccCCCCCcccccchhhhhhh
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~l~~~-------~~~~~~~lS~G~kqrv~la~~l  223 (255)
                       +.++.. ++  ..++.+++.+..   ... ..........   .+.++..       ...++..||||||||+++|++|
T Consensus        71 -v~Q~~~-~~--~~tv~enl~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL  142 (237)
T 2cbz_A           71 -VPQQAW-IQ--NDSLRENILFGC---QLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV  142 (237)
T ss_dssp             -ECSSCC-CC--SEEHHHHHHTTS---CCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             -EcCCCc-CC--CcCHHHHhhCcc---ccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence             444432 11  134444433211   111 1111122221   2222221       2456789999999999999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      +.+|++|||||||++||+.++..+.+++.
T Consensus       143 ~~~p~lllLDEPts~LD~~~~~~i~~~l~  171 (237)
T 2cbz_A          143 YSNADIYLFDDPLSAVDAHVGKHIFENVI  171 (237)
T ss_dssp             HHCCSEEEEESTTTTSCHHHHHHHHHHTT
T ss_pred             hcCCCEEEEeCcccccCHHHHHHHHHHHH
Confidence            99999999999999999999999999873

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=99.98  E-value=4.5e-34  Score=247.23  Aligned_cols=167  Identities=17%  Similarity=0.141  Sum_probs=120.0

Q ss_pred             CeEEecCchheehhh-hcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C----
Q 025293           76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P----  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~-~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~----  148 (255)
                      .+|+++||++.|++. .+.  +|+|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++... .    
T Consensus        15 ~~l~~~~l~~~y~~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~   89 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPNVQ--VLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHH   89 (271)
T ss_dssp             CCEEEEEEEECCTTCTTSC--CEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHH
T ss_pred             ceEEEEEEEEEeCCCCCce--eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHH
Confidence            479999999999751 123  5699999999999999999999999999999999998   99999 4554321 1    


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCC-ccHH------HHHHHHHhh--ccc--CCccCCCCCcccc
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPL------LLLNCLKNL--RNQ--GSVYAPSFDHGVG  214 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~------~~~~~l~~l--~~~--~~~~~~~lS~G~k  214 (255)
                         ..+|+ +.++.. ++.  .++.+++.+..   ..... ....      .+.++++.+  ++.  .+.++..|||||+
T Consensus        90 ~~~~~i~~-v~Q~~~-l~~--~tv~enl~~~~---~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~  162 (271)
T 2ixe_A           90 YLHTQVAA-VGQEPL-LFG--RSFRENIAYGL---TRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQR  162 (271)
T ss_dssp             HHHHHEEE-ECSSCC-CCS--SBHHHHHHTTC---SSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHH
T ss_pred             HHhccEEE-EecCCc-ccc--ccHHHHHhhhc---ccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHH
Confidence               12454 444332 221  24444443211   00111 0000      123445554  332  4567889999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++|++|+.+|++|||||||++||+.++..+.++|.+.
T Consensus       163 QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~  202 (271)
T 2ixe_A          163 QAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYES  202 (271)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=99.98  E-value=5.5e-33  Score=236.85  Aligned_cols=161  Identities=19%  Similarity=0.193  Sum_probs=118.8

Q ss_pred             eEEecCchhee-hhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC--------
Q 025293           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------  146 (255)
Q Consensus        77 ~l~v~~lsk~y-~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~--------  146 (255)
                      ||+++||++.| ++  +.  +|+|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++..        
T Consensus         1 ml~~~~l~~~y~~~--~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   73 (243)
T 1mv5_A            1 MLSARHVDFAYDDS--EQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN   73 (243)
T ss_dssp             CEEEEEEEECSSSS--SC--SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred             CEEEEEEEEEeCCC--Cc--eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence            48999999999 44  33  5599999999999999999999999999999999998   99999 444421        


Q ss_pred             CCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-------------CccCCCCCccc
Q 025293          147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGV  213 (255)
Q Consensus       147 ~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-------------~~~~~~lS~G~  213 (255)
                      ....+|+ +.++... +.  .++.+++.+     +.........+..+++.+++..             ..++..|||||
T Consensus        74 ~~~~i~~-v~q~~~l-~~--~tv~enl~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq  144 (243)
T 1mv5_A           74 WRSQIGF-VSQDSAI-MA--GTIRENLTY-----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ  144 (243)
T ss_dssp             CTTTCCE-ECCSSCC-CC--EEHHHHTTS-----CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred             HHhhEEE-EcCCCcc-cc--ccHHHHHhh-----hccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence            1123555 4443321 11  133333221     1111223344566777666542             13456899999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++|++|+.+|++||+||||++||+.++..+.++|.+
T Consensus       145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~  184 (243)
T 1mv5_A          145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS  184 (243)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.97  E-value=1.2e-32  Score=235.50  Aligned_cols=157  Identities=19%  Similarity=0.115  Sum_probs=120.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      ||+++||++.    .    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |+ |+ .+++....       
T Consensus         4 ~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~~   71 (249)
T 2qi9_C            4 VMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATKL   71 (249)
T ss_dssp             EEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHHH
T ss_pred             EEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHHH
Confidence            7999999986    2    6699999999999999999999999999999999998   89 98 45443211       


Q ss_pred             -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhcc
Q 025293          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (255)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~  225 (255)
                       ..+|+ +.++...+  ..+++.+++.+.    .... .....+.++++.+++.  .+.++..||||||||+++|++|+.
T Consensus        72 ~~~i~~-v~q~~~~~--~~~tv~e~l~~~----~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~  143 (249)
T 2qi9_C           72 ALHRAY-LSQQQTPP--FATPVWHYLTLH----QHDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  143 (249)
T ss_dssp             HHHEEE-ECSCCCCC--TTCBHHHHHHTT----CSST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             hceEEE-ECCCCccC--CCCcHHHHHHHh----hccC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence             12454 44433211  124554444321    1111 1245567888888875  467788999999999999999999


Q ss_pred             CCc-------EEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 QHK-------VVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ~~~-------illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|+       +|||||||++||+.++..+.++|.+
T Consensus       144 ~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~  178 (249)
T 2qi9_C          144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA  178 (249)
T ss_dssp             HCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999       9999999999999999999999865

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=1.3e-32  Score=241.47  Aligned_cols=162  Identities=15%  Similarity=0.118  Sum_probs=118.8

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      ..|+++||++.|++. +.  +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus        52 ~~i~~~~vs~~y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~  125 (306)
T 3nh6_A           52 GRIEFENVHFSYADG-RE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS  125 (306)
T ss_dssp             CCEEEEEEEEESSTT-CE--EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred             CeEEEEEEEEEcCCC-Cc--eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence            359999999999642 33  5699999999999999999999999999999999998   99999 45543221      


Q ss_pred             --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~  213 (255)
                        ..+|+ +.++...+ .  .++.+++.+     +.. ......+..+++.+++.             .......|||||
T Consensus       126 ~r~~i~~-v~Q~~~lf-~--~Tv~eNi~~-----~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq  195 (306)
T 3nh6_A          126 LRSHIGV-VPQDTVLF-N--DTIADNIRY-----GRV-TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE  195 (306)
T ss_dssp             HHHTEEE-ECSSCCCC-S--EEHHHHHHT-----TST-TCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred             HhcceEE-EecCCccC-c--ccHHHHHHh-----hcc-cCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence              13565 55544322 1  244444332     211 12223333444433321             134456899999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++|||||+.+|+||||||||++||+.+...+.+.|.+
T Consensus       196 rQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~  235 (306)
T 3nh6_A          196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK  235 (306)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=99.97  E-value=7.5e-32  Score=227.89  Aligned_cols=155  Identities=12%  Similarity=0.131  Sum_probs=111.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      .+|+++||++.|++..++  +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++     .+++ 
T Consensus         5 ~~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~-   73 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF-   73 (229)
T ss_dssp             EEEEEEEEEECSSTTSCC--SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE-
T ss_pred             ceEEEEEEEEEeCCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE-
Confidence            479999999999632133  5599999999999999999999999999999999998   99998 4443     3454 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccccchhhhh
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kqrv~la~  221 (255)
                      +.+.... +.  .++.+++.+     +..  ........+++.+++.             ...++..||||||||+++|+
T Consensus        74 v~q~~~~-~~--~tv~enl~~-----~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr  143 (229)
T 2pze_A           74 CSQFSWI-MP--GTIKENIIF-----GVS--YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  143 (229)
T ss_dssp             ECSSCCC-CS--BCHHHHHHT-----TSC--CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred             EecCCcc-cC--CCHHHHhhc-----cCC--cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence            4443322 11  244443322     111  1111122222222211             12235799999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      +|+.+|++||+||||++||+.++..+.+++
T Consensus       144 al~~~p~lllLDEPts~LD~~~~~~i~~~l  173 (229)
T 2pze_A          144 AVYKDADLYLLDSPFGYLDVLTEKEIFESC  173 (229)
T ss_dssp             HHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred             HHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence            999999999999999999999999999863

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.97  E-value=2.2e-32  Score=235.30  Aligned_cols=164  Identities=13%  Similarity=0.063  Sum_probs=117.6

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||++.|++.. ...+|+|+||+|++|++++|+||||||||||+|+|+|+++   | +|+ .+++...       
T Consensus        16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~   90 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS   90 (260)
T ss_dssp             CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred             CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence            4699999999997621 1125699999999999999999999999999999999995   5 788 4544211       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~  213 (255)
                       ...+|+ +.++... +.  .++.+++.+     +.. ......+..+++.+++.             ...++..|||||
T Consensus        91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~-----~~~-~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq  160 (260)
T 2ghi_A           91 IRSIIGI-VPQDTIL-FN--ETIKYNILY-----GKL-DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE  160 (260)
T ss_dssp             HHTTEEE-ECSSCCC-CS--EEHHHHHHT-----TCT-TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred             HhccEEE-EcCCCcc-cc--cCHHHHHhc-----cCC-CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence             123555 4443322 11  244444322     111 11223344455444321             124567999999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+++|++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus       161 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l  201 (260)
T 2ghi_A          161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDL  201 (260)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.97  E-value=4e-32  Score=245.52  Aligned_cols=163  Identities=13%  Similarity=0.141  Sum_probs=121.6

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-----
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (255)
                      ...|+++||+|.|++..+.  +|+|+||+|++||+++|+||||||||||||+|+|++    +++|+ .+++....     
T Consensus        17 ~~~i~~~~l~~~y~~~~~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~   90 (390)
T 3gd7_A           17 GGQMTVKDLTAKYTEGGNA--ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLE   90 (390)
T ss_dssp             SCCEEEEEEEEESSSSSCC--SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHH
T ss_pred             CCeEEEEEEEEEecCCCeE--EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChH
Confidence            3579999999999432133  569999999999999999999999999999999998    67788 45543211     


Q ss_pred             ---CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCC-----------CCcc
Q 025293          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS-----------FDHG  212 (255)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~-----------lS~G  212 (255)
                         ..+|. +.+++..+.   .++.++       ..+........+.++++.+++.  .++++..           ||||
T Consensus        91 ~~rr~ig~-v~Q~~~lf~---~tv~en-------l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGG  159 (390)
T 3gd7_A           91 QWRKAFGV-IPQKVFIFS---GTFRKN-------LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHG  159 (390)
T ss_dssp             HHHHTEEE-ESCCCCCCS---EEHHHH-------HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHH
T ss_pred             HHhCCEEE-EcCCcccCc---cCHHHH-------hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHH
Confidence               23555 454443221   233332       2222223345667788877765  3445555           9999


Q ss_pred             cccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       213 ~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||+|||||+.+|++|||||||++||+..+.+++++|.+.
T Consensus       160 qrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~  201 (390)
T 3gd7_A          160 HKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQA  201 (390)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.96  E-value=6.6e-30  Score=242.74  Aligned_cols=165  Identities=17%  Similarity=0.130  Sum_probs=122.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (255)
                      .+|+++||+++|++..++  +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .+++...       
T Consensus       340 ~~i~~~~v~~~y~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKP--ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN  414 (582)
T ss_pred             CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence            469999999999752123  5699999999999999999999999999999999998   99999 5555321       


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~  213 (255)
                       +..+|+ +.++...+.   .++.+++.+.     .........+.++++.+++.             .......|||||
T Consensus       415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq  485 (582)
T 3b5x_A          415 LRRHFAL-VSQNVHLFN---DTIANNIAYA-----AEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ  485 (582)
T ss_pred             HhcCeEE-EcCCCcccc---ccHHHHHhcc-----CCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence             123555 555443221   2444444321     10122344555666655442             123457899999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+++||+++.+|++||+||||++||+.+.+.+.+.+.+.
T Consensus       486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~  526 (582)
T 3b5x_A          486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDEL  526 (582)
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988753

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.96  E-value=7.2e-30  Score=222.72  Aligned_cols=150  Identities=11%  Similarity=0.137  Sum_probs=97.7

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      .+|+++||++.+    +.  +|+|+||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++     .+++ 
T Consensus        39 ~~l~~~~l~~~~----~~--vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~-  103 (290)
T 2bbs_A           39 DSLSFSNFSLLG----TP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF-  103 (290)
T ss_dssp             -----------C----CC--SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEE-
T ss_pred             ceEEEEEEEEcC----ce--EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEE-
Confidence            469999999864    22  5699999999999999999999999999999999998   89998 4443     3555 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccccchhhhh
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kqrv~la~  221 (255)
                      +.++... +.  .++.+++.      +...  .......+++.+++.             ...++..||||||||+++|+
T Consensus       104 v~Q~~~l-~~--~tv~enl~------~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr  172 (290)
T 2bbs_A          104 CSQNSWI-MP--GTIKENII------GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  172 (290)
T ss_dssp             ECSSCCC-CS--SBHHHHHH------TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred             EeCCCcc-Cc--ccHHHHhh------Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence            4443322 11  24444332      1111  111122222222221             12235799999999999999


Q ss_pred             hhccCCcEEEEcCCCCCCChhHHHHHHHHH
Q 025293          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (255)
Q Consensus       222 ~l~~~~~illlDep~~~LD~~~~~~l~~ll  251 (255)
                      +|+.+|++|||||||++||+..+..+.+++
T Consensus       173 aL~~~p~lllLDEPts~LD~~~~~~i~~~l  202 (290)
T 2bbs_A          173 AVYKDADLYLLDSPFGYLDVLTEKEIFESC  202 (290)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred             HHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            999999999999999999999999999863

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.96  E-value=6.1e-30  Score=242.95  Aligned_cols=164  Identities=15%  Similarity=0.105  Sum_probs=122.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC------
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (255)
                      .+|+++||++.|++..++  +|+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++....      
T Consensus       340 ~~i~~~~v~~~y~~~~~~--~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS  414 (582)
T ss_dssp             CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred             CcEEEEEEEEEcCCCCCc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence            369999999999742123  5699999999999999999999999999999999998   99999 55553211      


Q ss_pred             --CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCccc
Q 025293          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (255)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~  213 (255)
                        ..+|+ +.++...+.   .++.+++.+.     .........+.++++.+++.             .......|||||
T Consensus       415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq  485 (582)
T 3b60_A          415 LRNQVAL-VSQNVHLFN---DTVANNIAYA-----RTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ  485 (582)
T ss_dssp             HHHTEEE-ECSSCCCCS---SBHHHHHHTT-----TTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred             HHhhCeE-EccCCcCCC---CCHHHHHhcc-----CCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence              13565 555443221   2444444321     10122344555666655442             123457899999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++||+++.+|++||+||||++||+.+.+.+.+.+.+
T Consensus       486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b60_A          486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_dssp             HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998875

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.96  E-value=1e-29  Score=241.24  Aligned_cols=162  Identities=14%  Similarity=0.101  Sum_probs=119.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +|+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       339 ~i~~~~v~~~y~~~~~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~~  413 (578)
T 4a82_A          339 RIDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL  413 (578)
T ss_dssp             CEEEEEEEECSCSSSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCCCc--ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence            59999999999753233  5599999999999999999999999999999999998   99998 4555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~k  214 (255)
                      +..+|+ +.++...+.   .++.+++.+     +.+ ......+.+.++..++.             .......||||||
T Consensus       414 r~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~  483 (578)
T 4a82_A          414 RNQIGL-VQQDNILFS---DTVKENILL-----GRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK  483 (578)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHHGG-----GCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred             hhheEE-EeCCCccCc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHH
Confidence            123565 555443221   244443322     211 22233444444443321             1234468999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|+++|+||||++||+.+...+.+.+.+
T Consensus       484 Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  522 (578)
T 4a82_A          484 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDV  522 (578)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=2.1e-29  Score=239.45  Aligned_cols=162  Identities=18%  Similarity=0.125  Sum_probs=117.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++..++  +|+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       341 ~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~~  415 (587)
T 3qf4_A          341 SVSFENVEFRYFENTDP--VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKDL  415 (587)
T ss_dssp             CEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHHH
T ss_pred             cEEEEEEEEEcCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHHH
Confidence            69999999999653234  5599999999999999999999999999999999998   99998 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------c----CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lS~G~k  214 (255)
                      +..+++ +.++...+.   .++.+++.+     +. .........+.++..++         +    ...+...||||||
T Consensus       416 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqr  485 (587)
T 3qf4_A          416 RGHISA-VPQETVLFS---GTIKENLKW-----GR-EDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQK  485 (587)
T ss_dssp             HHHEEE-ECSSCCCCS---EEHHHHHTT-----TC-SSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHH
T ss_pred             HhheEE-ECCCCcCcC---ccHHHHHhc-----cC-CCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHH
Confidence            123554 555443221   133332211     11 12223333333332221         1    2355678999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++|||++.+|++|||||||++||+.+.+.+.+.+.+
T Consensus       486 Qrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~  524 (587)
T 3qf4_A          486 QRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR  524 (587)
T ss_dssp             HHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.95  E-value=7.7e-29  Score=232.84  Aligned_cols=162  Identities=14%  Similarity=0.103  Sum_probs=120.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~  153 (255)
                      ..+++++|+++.|++.     .+.++||+|++||++||+||||||||||+|+|+|+++   |++|++ +.+    ..+++
T Consensus       267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~----~~i~~  334 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK----QILSY  334 (538)
T ss_dssp             CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC----CCEEE
T ss_pred             cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC----eeeEe
Confidence            4589999999999862     3477899999999999999999999999999999998   999983 332    23444


Q ss_pred             EEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       154 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                       +.+.-+..  ...++.++....  ..... ........++++.+++.  .+.++..|||||||||+||++|+.+|++||
T Consensus       335 -~~q~~~~~--~~~tv~~~l~~~--~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl  408 (538)
T 3ozx_A          335 -KPQRIFPN--YDGTVQQYLENA--SKDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV  408 (538)
T ss_dssp             -ECSSCCCC--CSSBHHHHHHHH--CSSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred             -echhcccc--cCCCHHHHHHHh--hhhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence             33322211  113444433221  11111 11223345666767665  467889999999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHhh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||||++||+..+..+.++|.+.
T Consensus       409 LDEPT~gLD~~~~~~i~~~l~~l  431 (538)
T 3ozx_A          409 LDQPSSYLDVEERYIVAKAIKRV  431 (538)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHHH
T ss_pred             EeCCccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=1.7e-28  Score=233.37  Aligned_cols=160  Identities=16%  Similarity=0.076  Sum_probs=122.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      ..+++++|+++.|++  .   .|++++|+|++||++||+||||||||||+|+|+|+++   |++|++..    ...+|+ 
T Consensus       355 ~~~l~~~~l~~~~~~--~---~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~----~~~i~~-  421 (607)
T 3bk7_A          355 ETLVEYPRLVKDYGS--F---KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEW----DLTVAY-  421 (607)
T ss_dssp             CEEEEECCEEEECSS--C---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCC----CCCEEE-
T ss_pred             ceEEEEeceEEEecc--e---EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE----eeEEEE-
Confidence            358999999999976  1   4589999999999999999999999999999999998   99998422    234565 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl  232 (255)
                      +.++....  ..+++.+........ ..   .....+.++++.+++.  .++++..|||||+|||+||++|+.+|++|||
T Consensus       422 v~Q~~~~~--~~~tv~e~~~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlL  495 (607)
T 3bk7_A          422 KPQYIKAE--YEGTVYELLSKIDSS-KL---NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL  495 (607)
T ss_dssp             ECSSCCCC--CSSBHHHHHHHHHHH-HH---HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             EecCccCC--CCCcHHHHHHhhhcc-CC---CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            44433221  124554333222000 00   1123456778888775  4577889999999999999999999999999


Q ss_pred             cCCCCCCChhHHHHHHHHHHh
Q 025293          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 Dep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+.++..+.++|.+
T Consensus       496 DEPt~~LD~~~~~~l~~~l~~  516 (607)
T 3bk7_A          496 DEPSAYLDVEQRLAVSRAIRH  516 (607)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHH
T ss_pred             eCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=1.7e-28  Score=230.75  Aligned_cols=160  Identities=16%  Similarity=0.068  Sum_probs=121.7

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      ..+++++|+++.|++  .   .|+++||+|++||++||+||||||||||+|+|+|+++   |++|++..    ...+|+ 
T Consensus       285 ~~~l~~~~l~~~~~~--~---~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~~-  351 (538)
T 1yqt_A          285 ETLVTYPRLVKDYGS--F---RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVAY-  351 (538)
T ss_dssp             CEEEEECCEEEEETT--E---EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEEE-
T ss_pred             CeEEEEeeEEEEECC--E---EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEEE-
Confidence            458999999999976  1   4589999999999999999999999999999999998   99998432    234565 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illl  232 (255)
                      +.++....  ..+++.+........ ...   ....+.++++.+++.  .++++..|||||||||+||++|+.+|++|||
T Consensus       352 v~Q~~~~~--~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlL  425 (538)
T 1yqt_A          352 KPQYIKAD--YEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLL  425 (538)
T ss_dssp             ECSSCCCC--CSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             EecCCcCC--CCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            44443221  123443332221000 011   123456677777764  4577889999999999999999999999999


Q ss_pred             cCCCCCCChhHHHHHHHHHHh
Q 025293          233 DGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       233 Dep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||||++||+.++..+.++|.+
T Consensus       426 DEPt~~LD~~~~~~i~~~l~~  446 (538)
T 1yqt_A          426 DEPSAYLDVEQRLAVSRAIRH  446 (538)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHH
T ss_pred             eCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999875

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.95  E-value=5.6e-29  Score=236.96  Aligned_cols=161  Identities=16%  Similarity=0.146  Sum_probs=116.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++. ++  +|+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       354 ~i~~~~v~~~y~~~-~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~  427 (598)
T 3qf4_B          354 EIEFKNVWFSYDKK-KP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL  427 (598)
T ss_dssp             CEEEEEEECCSSSS-SC--SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEECCCC-Cc--cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence            58999999999752 23  5599999999999999999999999999999999998   99998 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------C----CccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~----~~~~~~lS~G~k  214 (255)
                      +...|. +.++...+.   .++.+++.+     +.+ ......+.++++..++.         .    ......||||||
T Consensus       428 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~  497 (598)
T 3qf4_B          428 RSSIGI-VLQDTILFS---TTVKENLKY-----GNP-GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR  497 (598)
T ss_dssp             HHHEEE-ECTTCCCCS---SBHHHHHHS-----SST-TCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred             HhceEE-EeCCCcccc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence            113555 555443221   244443322     111 11122333333333221         1    122368999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||+++||+++.+|++||+||||++||+.+...+.+.+.+
T Consensus       498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  536 (598)
T 3qf4_B          498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK  536 (598)
T ss_dssp             HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=4.6e-28  Score=230.41  Aligned_cols=163  Identities=14%  Similarity=0.068  Sum_probs=114.0

Q ss_pred             CeEEe--------cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------
Q 025293           76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------  141 (255)
Q Consensus        76 ~~l~v--------~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------  141 (255)
                      .+|++        +||+++|++  +. ++++++| +|++||++||+||||||||||||+|+|+++   |++|+.      
T Consensus        82 ~~i~i~~l~~~~~~~ls~~yg~--~~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~  154 (607)
T 3bk7_A           82 NAISIVNLPEQLDEDCVHRYGV--NA-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN  154 (607)
T ss_dssp             CCCEEEEECTTGGGSEEEECST--TC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred             ceEEEecCCccccCCeEEEECC--CC-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence            46788        899999976  22 2569999 999999999999999999999999999998   999972      


Q ss_pred             ----CCCCCC----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCcc
Q 025293          142 ----FDSQVK----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVY  205 (255)
Q Consensus       142 ----~~~~~~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~  205 (255)
                          +.+...          ....+. + ..+..+... .. ...........   .  ....+.++++.+++.  .+++
T Consensus       155 ~~~~~~G~~~~~~~~~~~~~~~~i~~-~-~q~~~~~~~-~~-~~tv~e~l~~~---~--~~~~~~~~L~~lgL~~~~~~~  225 (607)
T 3bk7_A          155 VIRAFRGNELQNYFERLKNGEIRPVV-K-PQYVDLLPK-AV-KGKVRELLKKV---D--EVGKFEEVVKELELENVLDRE  225 (607)
T ss_dssp             HHHHTTTSTHHHHHHHHHHTSCCCEE-E-CSCGGGGGG-TC-CSBHHHHHHHT---C--CSSCHHHHHHHTTCTTGGGSB
T ss_pred             hhheeCCEehhhhhhhhhhhhcceEE-e-echhhhchh-hc-cccHHHHhhhh---H--HHHHHHHHHHHcCCCchhCCC
Confidence                122110          011221 1 111110000 00 00111111111   0  112345677888775  4577


Q ss_pred             CCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +..|||||+|||+||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus       226 ~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l  274 (607)
T 3bk7_A          226 LHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL  274 (607)
T ss_dssp             GGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             hhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999998753

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.94  E-value=7.8e-28  Score=226.26  Aligned_cols=161  Identities=16%  Similarity=0.089  Sum_probs=110.4

Q ss_pred             EEe-cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc----------CCCCC
Q 025293           78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV  146 (255)
Q Consensus        78 l~v-~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~----------~~~~~  146 (255)
                      .++ +||+|.|++  +. ++++++| +|++||++||+||||||||||+|+|+|+++   |++|+.          +.+..
T Consensus        21 ~~~~~~ls~~yg~--~~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~   93 (538)
T 1yqt_A           21 EQLEEDCVHRYGV--NA-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE   93 (538)
T ss_dssp             ---CCCEEEECST--TC-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred             hhHhcCcEEEECC--cc-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence            455 699999976  22 2569999 999999999999999999999999999998   999972          12211


Q ss_pred             C----------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccc
Q 025293          147 K----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG  214 (255)
Q Consensus       147 ~----------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~k  214 (255)
                      .          ....+. +. ....+... ... ...........     ....+.++++.+++.  .+.++..||||||
T Consensus        94 ~~~~~~~~~~~~~~~~~-~~-q~~~~~~~-~~~-~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek  164 (538)
T 1yqt_A           94 LQNYFEKLKNGEIRPVV-KP-QYVDLIPK-AVK-GKVIELLKKAD-----ETGKLEEVVKALELENVLEREIQHLSGGEL  164 (538)
T ss_dssp             HHHHHHHHHTTSCCCEE-EC-SCGGGSGG-GCC-SBHHHHHHHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred             HHHHHHHHHHHhhhhhh-hh-hhhhhcch-hhh-ccHHHHHhhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence            0          011222 11 11110000 000 01111111111     012355678888875  4577889999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus       165 QRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l  204 (538)
T 1yqt_A          165 QRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL  204 (538)
T ss_dssp             HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=2.3e-26  Score=218.57  Aligned_cols=156  Identities=18%  Similarity=0.210  Sum_probs=113.0

Q ss_pred             cCchheehhhhcccccccccccccCCC-----cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~G-----eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      .++++.|++.. .  +++++||++.+|     |++||+||||||||||+|+|+|+++   |++|+.+.    ...+++ +
T Consensus       350 ~~~~~~y~~~~-~--~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~~-~  418 (608)
T 3j16_B          350 ASRAFSYPSLK-K--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVSM-K  418 (608)
T ss_dssp             SSSCCEECCEE-E--ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEEE-E
T ss_pred             cceeEEecCcc-c--ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEEE-e
Confidence            67888887531 2  459999999998     7899999999999999999999998   99996221    223444 3


Q ss_pred             ecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlD  233 (255)
                      .++.....  ..++.++.  .....+.  ........++++.+++.  .+.++..|||||+|||+||++|+.+|++||||
T Consensus       419 ~q~~~~~~--~~tv~e~~--~~~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD  492 (608)
T 3j16_B          419 PQKIAPKF--PGTVRQLF--FKKIRGQ--FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID  492 (608)
T ss_dssp             CSSCCCCC--CSBHHHHH--HHHCSST--TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             cccccccC--CccHHHHH--HHHhhcc--cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            33211111  12332211  1111111  11233455677777765  46788999999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHh
Q 025293          234 GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       234 ep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++||+.++..+.++|.+
T Consensus       493 EPT~gLD~~~~~~i~~ll~~  512 (608)
T 3j16_B          493 EPSAYLDSEQRIICSKVIRR  512 (608)
T ss_dssp             CTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999998875

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.94  E-value=7.6e-28  Score=237.22  Aligned_cols=170  Identities=14%  Similarity=0.168  Sum_probs=119.4

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEE
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (255)
                      .++|+++||++.|++..++  +|+|+||+|++|+++||+||||||||||+|+|+|+++   |++|+ .++++.   .+|+
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~--iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I~y  740 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RIAY  740 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSC--SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CEEE
T ss_pred             CceEEEEeeEEEeCCCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ceEe
Confidence            3589999999999752223  4599999999999999999999999999999999998   99998 343221   1222


Q ss_pred             EEecCCC-----------------------CC---------------------------------------------C--
Q 025293          154 VLPMDGF-----------------------HL---------------------------------------------Y--  163 (255)
Q Consensus       154 ~i~~~~~-----------------------~~---------------------------------------------~--  163 (255)
                       +.+..+                       ..                                             +  
T Consensus       741 -v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~  819 (986)
T 2iw3_A          741 -IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC  819 (986)
T ss_dssp             -ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             -eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence             111100                       00                                             0  


Q ss_pred             --------------CccCCcccChH--------HHH-----------HhcCCCCCccHHHHHHHHHhhcccC----CccC
Q 025293          164 --------------LSQLDAMEDPK--------EAH-----------ARRGAPWTFNPLLLLNCLKNLRNQG----SVYA  206 (255)
Q Consensus       164 --------------~~~l~~~~~~~--------~~~-----------~~~~~~~~~~~~~~~~~l~~l~~~~----~~~~  206 (255)
                                    ...++..++..        ...           ...+.........+.++++.+++..    +.++
T Consensus       820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~  899 (986)
T 2iw3_A          820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI  899 (986)
T ss_dssp             EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred             hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence                          00001101000        000           0112222223455678888888852    4678


Q ss_pred             CCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 ~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ..||||||||++||++|+.+|++|||||||++||+.+...+.++|.+
T Consensus       900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~  946 (986)
T 2iw3_A          900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE  946 (986)
T ss_dssp             GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=8.8e-27  Score=238.46  Aligned_cols=165  Identities=16%  Similarity=0.127  Sum_probs=124.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||+++|++.. ...+|+|+||+|++||++||+|+||||||||+++|.|++.   |++|+ .+++...        
T Consensus      1076 ~I~f~nVsf~Y~~~~-~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERP-EIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp             CEEEEEEEECCTTSC-SSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred             eEEEEEEEEeCCCCC-CCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence            599999999997532 1225599999999999999999999999999999999998   99999 5555322        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhccc---------CCcc----CCCCCccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV  213 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~---------~~~~----~~~lS~G~  213 (255)
                      +...+. |.++.+.+..   ++.+|+.     +|. +.+...+++.++++..++.         .+..    ...|||||
T Consensus      1152 R~~i~~-V~Qdp~LF~g---TIreNI~-----~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A         1152 RSQIAI-VSQEPTLFDC---SIAENII-----YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp             HTTEEE-ECSSCCCCSE---EHHHHHS-----SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred             HhheEE-ECCCCEeeCc---cHHHHHh-----ccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence            234565 6766654331   3323221     232 3344556666666655542         2322    35799999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||++|||||+.+|+||||||||+.||+.+.+.+.+.|++.
T Consensus      1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~ 1263 (1321)
T 4f4c_A         1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRA 1263 (1321)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999888653

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.2e-26  Score=217.57  Aligned_cols=164  Identities=13%  Similarity=0.075  Sum_probs=107.2

Q ss_pred             CchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCC------------CC--
Q 025293           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ------------VK--  147 (255)
Q Consensus        82 ~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~------------~~--  147 (255)
                      |++++|+...   +.+++++ .+++||++||+||||||||||||+|+|+++   |++|++....            ..  
T Consensus        82 ~~~~~Y~~~~---~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~  154 (608)
T 3j16_B           82 HVTHRYSANS---FKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN  154 (608)
T ss_dssp             TEEEECSTTS---CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred             CeEEEECCCc---eeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence            5677776532   1345555 689999999999999999999999999998   9999742110            00  


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                            .......+.........  ........................+.++++.+++.  .+.++..|||||+|||+|
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i  232 (608)
T 3j16_B          155 YFTKMLEDDIKAIIKPQYVDNIP--RAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI  232 (608)
T ss_dssp             HHHHHHHTSCCCEEECCCTTTHH--HHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred             hhhHHHHHhhhhhhchhhhhhhh--hhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence                  00000000000000000  00000000001111111112334567788888876  467789999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|+.+|++|||||||++||+..+..+.+++.+.
T Consensus       233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l  267 (608)
T 3j16_B          233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSL  267 (608)
T ss_dssp             HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGG
T ss_pred             HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998764

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.93  E-value=7.8e-26  Score=230.94  Aligned_cols=164  Identities=16%  Similarity=0.129  Sum_probs=118.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||++.|++... ..+|+|+||+|++||++||+||||||||||+++|+|+.+   |++|+ .+++...        
T Consensus      1030 ~i~~~~v~~~y~~~~~-~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~~ 1105 (1284)
T 3g5u_A         1030 NVQFSGVVFNYPTRPS-IPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQWL 1105 (1284)
T ss_dssp             CEEEEEEEBCCSCGGG-CCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHHH
T ss_pred             cEEEEEEEEECCCCCC-CeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHHH
Confidence            5999999999975311 125699999999999999999999999999999999998   99999 5555432        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC-CCccHHHHHHHHHhhccc---------CC----ccCCCCCccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGV  213 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~  213 (255)
                      +...+. +.++...+.   .++.+|+.+     +.+ .......+.+.++..++.         .+    .....|||||
T Consensus      1106 r~~i~~-v~Q~~~l~~---~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq 1176 (1284)
T 3g5u_A         1106 RAQLGI-VSQEPILFD---CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQ 1176 (1284)
T ss_dssp             TTSCEE-EESSCCCCS---SBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHH
T ss_pred             HhceEE-ECCCCcccc---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHH
Confidence            234565 666553221   233332211     111 112333444444433221         11    2345899999


Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||+++||+|+.+|+||||||||++||+.+.+.+.+.+++
T Consensus      1177 ~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A         1177 KQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp             HHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.93  E-value=2.8e-26  Score=234.22  Aligned_cols=163  Identities=17%  Similarity=0.147  Sum_probs=117.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++.. ...+|+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus       387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~  462 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL  462 (1284)
T ss_dssp             CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence            589999999997531 1225699999999999999999999999999999999998   99998 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHH---------hhccc----CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQ----GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~l~~~----~~~~~~~lS~G~k  214 (255)
                      +..+|. +.++...+.   .++.+|+.+..     + ......+.+.++         .+..+    .......||||||
T Consensus       463 r~~i~~-v~Q~~~l~~---~ti~eNi~~g~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~  532 (1284)
T 3g5u_A          463 REIIGV-VSQEPVLFA---TTIAENIRYGR-----E-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK  532 (1284)
T ss_dssp             HHHEEE-ECSSCCCCS---SCHHHHHHHHC-----S-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred             HhheEE-EcCCCccCC---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence            112555 555544322   25555544321     1 122233333332         22222    1234568999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++|||||+.+|+||||||||++||+.+...+.+.++.
T Consensus       533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~  571 (1284)
T 3g5u_A          533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK  571 (1284)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999988888754

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.92  E-value=7.2e-26  Score=223.20  Aligned_cols=156  Identities=13%  Similarity=0.029  Sum_probs=111.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      .|...|+++.|++  +.  +|+|+||+|++|+++||+||||||||||||+|+|-.    . .|....   .....++ +.
T Consensus       435 ~L~~~~ls~~yg~--~~--iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g~~~~---~~~~~~~-v~  501 (986)
T 2iw3_A          435 DLCNCEFSLAYGA--KI--LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DGFPTQ---EECRTVY-VE  501 (986)
T ss_dssp             EEEEEEEEEEETT--EE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TTCCCT---TTSCEEE-TT
T ss_pred             eeEEeeEEEEECC--EE--eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CCCccc---cceeEEE-Ec
Confidence            5666699999987  44  559999999999999999999999999999999621    1 121000   0111222 21


Q ss_pred             cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~illlD  233 (255)
                      ++ .......+++.+++..     .... . ...+.++++.+++.   .++++..||||||||++||++|+.+|++||||
T Consensus       502 q~-~~~~~~~ltv~e~l~~-----~~~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD  573 (986)
T 2iw3_A          502 HD-IDGTHSDTSVLDFVFE-----SGVG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD  573 (986)
T ss_dssp             CC-CCCCCTTSBHHHHHHT-----TCSS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             cc-ccccccCCcHHHHHHH-----hhcC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            11 1011112343333221     1111 1 45677889999884   36778899999999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHh
Q 025293          234 GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       234 ep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++||+.++..+.++|.+
T Consensus       574 EPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          574 EPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             STTTTCCHHHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHh
Confidence            99999999999999998864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.92  E-value=1.6e-25  Score=229.21  Aligned_cols=163  Identities=16%  Similarity=0.128  Sum_probs=119.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      -|+++||+++|++.. ...+|+|+||+|++|+.++|+||+|||||||+++|.|++.   |++|+ .+++...+       
T Consensus       415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l  490 (1321)
T 4f4c_A          415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL  490 (1321)
T ss_dssp             CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred             cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence            589999999997532 1225599999999999999999999999999999999998   99998 45553211       


Q ss_pred             -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------cCC----ccCCCCCcccc
Q 025293          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGS----VYAPSFDHGVG  214 (255)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~~~----~~~~~lS~G~k  214 (255)
                       ..+++ +.++.+.+.   -++.+|+.+     |. ++...+++.++++..++         +.+    .....||||||
T Consensus       491 r~~i~~-v~Q~~~Lf~---~TI~eNI~~-----g~-~~~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk  560 (1321)
T 4f4c_A          491 RKNVAV-VSQEPALFN---CTIEENISL-----GK-EGITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK  560 (1321)
T ss_dssp             HHHEEE-ECSSCCCCS---EEHHHHHHT-----TC-TTCCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred             hhcccc-cCCcceeeC---CchhHHHhh-----hc-ccchHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence             13555 666555432   243343322     22 22344555555554332         222    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++||||+..+|+||||||||++||+.+...+.+.|+.
T Consensus       561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~  599 (1321)
T 4f4c_A          561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDK  599 (1321)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998888887764

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.91  E-value=4.3e-25  Score=212.79  Aligned_cols=155  Identities=15%  Similarity=0.082  Sum_probs=89.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHH---------------------HHHHHHhcccCCCCCccC--------CCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKASSF--------DSQV  146 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLL---------------------k~L~Gll~~~~p~~G~~~--------~~~~  146 (255)
                      +|+||||+|++||++||+||||||||||+                     +++.|+..   |+.|.+.        .+..
T Consensus        33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred             ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence            66999999999999999999999999998                     88888876   7755411        1110


Q ss_pred             C----CCCeEEEEecCCCC----------------C-CCccCCcccChHHHHHhc--CCCCCc------cHHHHHHHHHh
Q 025293          147 K----PPDVATVLPMDGFH----------------L-YLSQLDAMEDPKEAHARR--GAPWTF------NPLLLLNCLKN  197 (255)
Q Consensus       147 ~----~~~~g~~i~~~~~~----------------~-~~~~l~~~~~~~~~~~~~--~~~~~~------~~~~~~~~l~~  197 (255)
                      .    ...+|. +......                . ....+++.++..+.....  ......      .......+++.
T Consensus       110 ~~~~~~~~ig~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (670)
T 3ux8_A          110 TSRNPRSTVGT-VTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN  188 (670)
T ss_dssp             -----CCBHHH-HTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred             hhccchhceee-eechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            0    001111 0000000                0 001123334333211100  000000      00112234677


Q ss_pred             hccc---CCccCCCCCcccccchhhhhhhccCCc--EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          198 LRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       198 l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~--illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++.   .++++..|||||||||+||++|+.+|+  +|||||||++||+..+..+.++|.+.
T Consensus       189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l  250 (670)
T 3ux8_A          189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM  250 (670)
T ss_dssp             TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred             cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            7765   467889999999999999999999988  99999999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.91  E-value=8.9e-25  Score=205.25  Aligned_cols=159  Identities=14%  Similarity=0.055  Sum_probs=104.3

Q ss_pred             cCchheehhhhccccccccccccc-CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc------------CCCCCC
Q 025293           81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVK  147 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i-~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~------------~~~~~~  147 (255)
                      ++.+.+||.+.     ++-..+.+ ++||++||+||||||||||+|+|+|+++   |++|++            +.+...
T Consensus         3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i   74 (538)
T 3ozx_A            3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI   74 (538)
T ss_dssp             CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred             CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence            35678898743     23344554 4899999999999999999999999998   999974            111110


Q ss_pred             --------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccch
Q 025293          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv  217 (255)
                              ....+.........+. ..+.. ...........  .   .....++++.+++.  .++++..|||||+|||
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~v~~~l~~~~--~---~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv  147 (538)
T 3ozx_A           75 YNYFKELYSNELKIVHKIQYVEYA-SKFLK-GTVNEILTKID--E---RGKKDEVKELLNMTNLWNKDANILSGGGLQRL  147 (538)
T ss_dssp             HHHHHHHHTTCCCEEEECSCTTGG-GTTCC-SBHHHHHHHHC--C---SSCHHHHHHHTTCGGGTTSBGGGCCHHHHHHH
T ss_pred             HHHHHHHhhcccchhhccchhhhh-hhhcc-CcHHHHhhcch--h---HHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence                    0111111111111110 00000 01111111110  0   11244667777765  4677889999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||++|+.+|++|||||||++||+..+..+.++|.+.
T Consensus       148 ~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l  184 (538)
T 3ozx_A          148 LVAASLLREADVYIFDQPSSYLDVRERMNMAKAIREL  184 (538)
T ss_dssp             HHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.90  E-value=4.2e-25  Score=194.54  Aligned_cols=143  Identities=21%  Similarity=0.285  Sum_probs=106.6

Q ss_pred             CeEEecCchheehhhhcccccccccccc-----------------------cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~-----------------------i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|++++|++.|+.      +++++++.                       +++|+++||+||||||||||+++|+|+++
T Consensus        42 ~~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~  115 (312)
T 3aez_A           42 EQIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA  115 (312)
T ss_dssp             CCCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence            46899999999964      33555543                       89999999999999999999999999997


Q ss_pred             ccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-CccCCCCCc
Q 025293          133 KIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDH  211 (255)
Q Consensus       133 ~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~  211 (255)
                         |+.|        ...++. +.++++....   ++.++.... ..++.+...+...+.++++.++.+. +.+++.||+
T Consensus       116 ---~~~G--------~~~v~~-v~qd~~~~~~---t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~  179 (312)
T 3aez_A          116 ---RWDH--------HPRVDL-VTTDGFLYPN---AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSH  179 (312)
T ss_dssp             ---TSTT--------CCCEEE-EEGGGGBCCH---HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEET
T ss_pred             ---ccCC--------CCeEEE-EecCccCCcc---cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCCh
Confidence               7766        345665 7777764331   222221110 0123344455566777888877333 367889999


Q ss_pred             ccccchhhhhhhccCCcEEEEcCCCCCCC
Q 025293          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       212 G~kqrv~la~~l~~~~~illlDep~~~LD  240 (255)
                      ||+||+++|++++.+|+|||+|||++.+|
T Consensus       180 G~~qRv~~a~al~~~p~ilIlDep~~~~d  208 (312)
T 3aez_A          180 LHYDIIPGAEQVVRHPDILILEGLNVLQT  208 (312)
T ss_dssp             TTTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred             hhhhhhhhHHHhccCCCEEEECCccccCC
Confidence            99999999999999999999999999987

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.87  E-value=8.8e-23  Score=196.67  Aligned_cols=64  Identities=13%  Similarity=0.006  Sum_probs=53.7

Q ss_pred             HHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+.+..+++.   .+.++..|||||||||+||++|+.+|   ++||+||||++||+..+..+.++|.+.
T Consensus       523 ~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l  592 (670)
T 3ux8_A          523 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL  592 (670)
T ss_dssp             HHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence            34555666654   35678899999999999999998876   599999999999999999999998753

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.86  E-value=1.2e-25  Score=207.51  Aligned_cols=159  Identities=14%  Similarity=0.028  Sum_probs=105.5

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC-c-c-CCCCCCCCCe
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDV  151 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G-~-~-~~~~~~~~~~  151 (255)
                      .++++++||++.|+          ++||++++|++++|+||||||||||+|+|+|++.   |++| + + ++++. ....
T Consensus       116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i  181 (460)
T 2npi_A          116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPI  181 (460)
T ss_dssp             CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCS
T ss_pred             cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCe
Confidence            45788889988885          5789999999999999999999999999999998   8899 6 3 33322 1122


Q ss_pred             EEEEecCCCC-CCCccCCcccChHHHHHh-cCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhh--hccCC
Q 025293          152 ATVLPMDGFH-LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQH  227 (255)
Q Consensus       152 g~~i~~~~~~-~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~--l~~~~  227 (255)
                      +. +...... .....+++.++. +.... .+.   ........+++.+++.....+..|||||+||+++|++  |+.+|
T Consensus       182 ~~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~~---~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p  256 (460)
T 2npi_A          182 FT-VPGCISATPISDILDAQLPT-WGQSLTSGA---TLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP  256 (460)
T ss_dssp             SS-CSSCCEEEECCSCCCTTCTT-CSCBCBSSC---CSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ee-eccchhhcccccccchhhhh-cccccccCc---chHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence            22 2111100 000112333332 11100 010   0011122344455554333367899999999999999  99999


Q ss_pred             cE----EEEcC-CCCCCChhHHHHHHHHHHh
Q 025293          228 KV----VIVDG-NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       228 ~i----lllDe-p~~~LD~~~~~~l~~ll~~  253 (255)
                      ++    ||+|| ||++||+. ...+.+++++
T Consensus       257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~  286 (460)
T 2npi_A          257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK  286 (460)
T ss_dssp             HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred             ccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence            99    99999 99999998 7777777654

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.86  E-value=4.6e-23  Score=171.47  Aligned_cols=127  Identities=17%  Similarity=0.092  Sum_probs=80.9

Q ss_pred             heehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCC------CCCCeEEEEecC
Q 025293           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV------KPPDVATVLPMD  158 (255)
Q Consensus        85 k~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~------~~~~~g~~i~~~  158 (255)
                      |+|++..    +|+|+    ++|++++|+||||||||||+++|+|+ +   |++|++.....      ....+|+ +.++
T Consensus         8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~   74 (208)
T 3b85_A            8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT   74 (208)
T ss_dssp             CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred             CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence            5676633    55885    79999999999999999999999999 8   99997421000      0011111 1110


Q ss_pred             CCCCCCccCCcccCh-HH----HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293          159 GFHLYLSQLDAMEDP-KE----AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       159 ~~~~~~~~l~~~~~~-~~----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlD  233 (255)
                      .          .+++ .+    .......   .....+.++++. +           .||+||+++|++|+.+|++||||
T Consensus        75 ~----------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-g-----------lGq~qrv~lAraL~~~p~lllLD  129 (208)
T 3b85_A           75 L----------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-G-----------IVEVAPLAYMRGRTLNDAFVILD  129 (208)
T ss_dssp             ---------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-T-----------SEEEEEGGGGTTCCBCSEEEEEC
T ss_pred             H----------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-C-----------CchHHHHHHHHHHhcCCCEEEEe
Confidence            0          1111 01    0011110   111223344443 2           19999999999999999999999


Q ss_pred             CCCCCCChhHHHHHHHHHHh
Q 025293          234 GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       234 ep~~~LD~~~~~~l~~ll~~  253 (255)
                      |||++    ++..+.++|.+
T Consensus       130 EPts~----~~~~l~~~l~~  145 (208)
T 3b85_A          130 EAQNT----TPAQMKMFLTR  145 (208)
T ss_dssp             SGGGC----CHHHHHHHHTT
T ss_pred             CCccc----cHHHHHHHHHH
Confidence            99999    78888888764

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.84  E-value=3e-21  Score=188.54  Aligned_cols=65  Identities=11%  Similarity=0.008  Sum_probs=56.6

Q ss_pred             HHHHHHHhhcccC---CccCCCCCcccccchhhhhhhccC---CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       190 ~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~---~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...++++.+++..   ..++..|||||+|||+||++|+.+   |+||||||||++||+..+..+.++|++.
T Consensus       709 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L  779 (842)
T 2vf7_A          709 RALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL  779 (842)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            3456777887753   567889999999999999999996   7999999999999999999999998753

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.83  E-value=1.5e-21  Score=157.17  Aligned_cols=105  Identities=12%  Similarity=0.027  Sum_probs=67.8

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHH------------HHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCcc
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAE------------VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ  166 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~------------L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~  166 (255)
                      |+||++++||+++|+||||||||||+|+            +.|++.   ++.|             . ..+.        
T Consensus         1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~---~~~~-------------~-~~~~--------   55 (171)
T 4gp7_A            1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMS---DDEN-------------D-QTVT--------   55 (171)
T ss_dssp             CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHC---SSTT-------------C-GGGH--------
T ss_pred             CccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhc---Cccc-------------c-hhhH--------
Confidence            6899999999999999999999999994            444442   1111             0 0000        


Q ss_pred             CCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhH
Q 025293          167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  243 (255)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~  243 (255)
                          .  ......        .......+ ..+.. ........|+|++||+++|++++.+|++|++||||++||+.+
T Consensus        56 ----~--~~~~~~--------~~~~~~~~-~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~  118 (171)
T 4gp7_A           56 ----G--AAFDVL--------HYIVSKRL-QLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERN  118 (171)
T ss_dssp             ----H--HHHHHH--------HHHHHHHH-HTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred             ----H--HHHHHH--------HHHHHHHH-hCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHH
Confidence                0  000000        00011111 11211 112234569999999999999999999999999999999983

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.83  E-value=7.3e-23  Score=186.10  Aligned_cols=141  Identities=8%  Similarity=-0.060  Sum_probs=101.6

Q ss_pred             cccccccccCCCc--------------------EEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEE
Q 025293           96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (255)
Q Consensus        96 ~l~~isl~i~~Ge--------------------ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (255)
                      +++++||+|++|+                    ++||+||||||||||+|+|+|+.+   |++|+ .+++.... ..+. 
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~-  112 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH-  112 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence            5699999999999                    999999999999999999999998   99998 44443211 1244 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcc--cccchhhhhhhcc-------
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGL-------  225 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G--~kqrv~la~~l~~-------  225 (255)
                      +......   ..+++.+++.+..     . .   ..+.++++.+++........+|+|  |+||+.+|++|..       
T Consensus       113 v~q~~~~---~~ltv~D~~g~~~-----~-~---~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~l  180 (413)
T 1tq4_A          113 PYKHPNI---PNVVFWDLPGIGS-----T-N---FPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF  180 (413)
T ss_dssp             EEECSSC---TTEEEEECCCGGG-----S-S---CCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred             ecccccc---CCeeehHhhcccc-----h-H---HHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence            3332211   1234444432210     1 1   124566777766542222239999  9999999999999       


Q ss_pred             ---CCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       226 ---~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                         +|+++++||||++||+..+.++.+++.+
T Consensus       181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~~  211 (413)
T 1tq4_A          181 VRTKVDSDITNEADGEPQTFDKEKVLQDIRL  211 (413)
T ss_dssp             EECCHHHHHHHHHTTCCTTCCHHHHHHHHHH
T ss_pred             EEecCcccccCcccccCCHHHHHHHHHHHHH
Confidence               9999999999999999999999888765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.83  E-value=1.9e-20  Score=183.73  Aligned_cols=64  Identities=13%  Similarity=0.008  Sum_probs=55.4

Q ss_pred             HHHHHHhhcccC---CccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          191 LLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       191 ~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..++++.+++..   ..++..|||||+|||++|++|+.+|   ++|||||||++||+..+..++++|.+.
T Consensus       825 ~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L  894 (972)
T 2r6f_A          825 KLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRL  894 (972)
T ss_dssp             HHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            356777787753   5678899999999999999999764   999999999999999999999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.81  E-value=1.4e-20  Score=185.34  Aligned_cols=65  Identities=11%  Similarity=0.034  Sum_probs=56.2

Q ss_pred             HHHHHHHhhccc---CCccCCCCCcccccchhhhhhhccCC---cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       190 ~~~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~---~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...++++.+++.   ...++..|||||+|||+||++|+.+|   +||||||||++||+..++.+.++|++.
T Consensus       784 ~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L  854 (916)
T 3pih_A          784 RTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRL  854 (916)
T ss_dssp             HHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            456778888875   35678899999999999999998765   799999999999999999999998753

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.81  E-value=1.2e-21  Score=171.59  Aligned_cols=129  Identities=12%  Similarity=0.135  Sum_probs=88.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      +|+++||++.|+ ..    +|+++||+|++|++++|+||||||||||+++|+|++.      |             .++.
T Consensus       101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~------G-------------~I~~  156 (305)
T 2v9p_A          101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG------G-------------SVLS  156 (305)
T ss_dssp             HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT------C-------------EEEC
T ss_pred             eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhcC------c-------------eEEE
Confidence            588999999997 22    5699999999999999999999999999999999972      3             2221


Q ss_pred             cCCC--CCCCccCCccc-ChHHHHHhcCCCCCccHHHHHHHHHh-hcccCCccCCCCCcccccchhhhhhhccCCcEEEE
Q 025293          157 MDGF--HLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (255)
Q Consensus       157 ~~~~--~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illl  232 (255)
                      ....  .++.  .+..+ ++       .+..... ....+.++. +....+  ...||||||||   ||+++.+|+||| 
T Consensus       157 ~v~q~~~lf~--~ti~~~ni-------~~~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl-  220 (305)
T 2v9p_A          157 FANHKSHFWL--ASLADTRA-------ALVDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV-  220 (305)
T ss_dssp             GGGTTSGGGG--GGGTTCSC-------EEEEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE-
T ss_pred             EecCcccccc--ccHHHHhh-------ccCcccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE-
Confidence            1110  0010  01111 11       1111111 133444554 222222  67899999999   899999999999 


Q ss_pred             cCCCCCCChhHHHHHH
Q 025293          233 DGNYLFLDGGVWKDVS  248 (255)
Q Consensus       233 Dep~~~LD~~~~~~l~  248 (255)
                         |++||+.....+.
T Consensus       221 ---Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          221 ---TSNIDVQAEDRYL  233 (305)
T ss_dssp             ---EESSCSTTCGGGG
T ss_pred             ---ECCCCHHHHHHHH
Confidence               9999998776654

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.79  E-value=3e-20  Score=168.95  Aligned_cols=46  Identities=15%  Similarity=0.001  Sum_probs=43.8

Q ss_pred             CCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||+||+++|++|+.+|  ++|||||||++||+..+..+.++|.+.
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l  343 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL  343 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence            6999999999999999999  999999999999999999999998763

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.78  E-value=1.8e-19  Score=153.00  Aligned_cols=132  Identities=23%  Similarity=0.336  Sum_probs=81.6

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~  174 (255)
                      +|+|+||++++|+++||+||||||||||+++|+|++.       . .++ . ....++. +..+.++.   .++..++..
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~-~-~~~~i~~-v~~d~~~~---~l~~~~~~~   80 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE-Q-RQRKVVI-LSQDRFYK---VLTAEQKAK   80 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC-G-GGCSEEE-EEGGGGBC---CCCHHHHHH
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc-c-cCCceEE-EeCCcCcc---ccCHhHhhh
Confidence            5699999999999999999999999999999999872       1 111 0 0123444 55554321   134333322


Q ss_pred             HHHHhcCC--CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCCh
Q 025293          175 EAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (255)
Q Consensus       175 ~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~  241 (255)
                      .....+.+  +...+...+.+.++.+.-....+++.||+||+||+.+ ++++.+|+++|+|||+...|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~  148 (245)
T 2jeo_A           81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQ  148 (245)
T ss_dssp             HHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSH
T ss_pred             hhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccH
Confidence            22111222  1223344556666666555677889999999999987 577789999999999988775

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.76  E-value=5.5e-21  Score=155.17  Aligned_cols=51  Identities=12%  Similarity=0.039  Sum_probs=46.2

Q ss_pred             CccCCCCCcccccchhhhhh-----hccCCcEEEEcC--CCCCCChhHHHHHHHHHHh
Q 025293          203 SVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la~~-----l~~~~~illlDe--p~~~LD~~~~~~l~~ll~~  253 (255)
                      ..++..||+||+||+++|++     ++.+|+++|+||  |+++||+..++.+.+++++
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence            45567899999999999996     999999999999  9999999999999998754

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.71  E-value=1.1e-17  Score=150.11  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=47.1

Q ss_pred             ccCCCCCcccccchhhhhhhc------cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       204 ~~~~~lS~G~kqrv~la~~l~------~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .++..|||||+||+++|++|+      .+|++|||||||++||+..+..+.++|.+.
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l  331 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKEL  331 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGG
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence            467789999999999999998      799999999999999999999999998764

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.71  E-value=8.9e-18  Score=148.23  Aligned_cols=51  Identities=14%  Similarity=0.033  Sum_probs=45.8

Q ss_pred             ccCCCCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       204 ~~~~~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ..+..||+||+||+++|++|+    .+|++||+||||++||+..+..+.+++.+.
T Consensus       215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~  269 (322)
T 1e69_A          215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN  269 (322)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            346689999999999999996    578999999999999999999999998653

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.70  E-value=2.9e-19  Score=149.34  Aligned_cols=140  Identities=9%  Similarity=0.026  Sum_probs=77.2

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--CCCeEEEEecCCCCCCCccCCcccC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--PPDVATVLPMDGFHLYLSQLDAMED  172 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--~~~~g~~i~~~~~~~~~~~l~~~~~  172 (255)
                      .|+||||+|++|++++|+||||||||||+++|+|++    |  |+ .++....  .+..+.   .++..+      ...+
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~g~~~~~~~~~~~~---~~~i~~------~~~~   76 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYFSVSCTTRKKREKE---KEGVDY------YFID   76 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEECCCEECSCCCSSC---CBTTTB------EECC
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEEeecccCCCCCccc---ccCCeE------EECC
Confidence            459999999999999999999999999999999987    6  65 2221100  000000   000000      0011


Q ss_pred             hHHHHHhc---C------CCC---CccHHHHHHHHHhhcccCCccCCCCCcccccchhh-----hhhhccCCcEEEEcCC
Q 025293          173 PKEAHARR---G------APW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-----DILVGLQHKVVIVDGN  235 (255)
Q Consensus       173 ~~~~~~~~---~------~~~---~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~l-----a~~l~~~~~illlDep  235 (255)
                      ...+....   .      +..   ......+.++++.....  .....+||||+||+++     +++++..|++++||||
T Consensus        77 ~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~  154 (218)
T 1z6g_A           77 KTIFEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSR  154 (218)
T ss_dssp             HHHHHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHH
T ss_pred             HHHHHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHH
Confidence            11111100   0      000   01122344555543321  1114679999999999     8899999999999999


Q ss_pred             CCCCChhHHHHHHHHHH
Q 025293          236 YLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       236 ~~~LD~~~~~~l~~ll~  252 (255)
                      ++.+|......+.+.+.
T Consensus       155 ~~~~d~~~~~~i~~~l~  171 (218)
T 1z6g_A          155 LLTRNTENQEQIQKRME  171 (218)
T ss_dssp             HHHTCCCCHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHH
Confidence            99999887777766654

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.69  E-value=3.9e-18  Score=147.11  Aligned_cols=127  Identities=12%  Similarity=0.033  Sum_probs=70.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~  182 (255)
                      .++|+||||||||||+|+|+|+..   |++|+ .+++...     ....+. +.+... . ...+++.+++.+.....  
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~-v~q~~~-~-~~~ltv~d~~~~g~~~~--   75 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGH-VIEEGG-V-KMKLTVIDTPGFGDQIN--   75 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEE-SCC------CCEEEEECCCC--CCSB--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEE-EeecCC-C-cCCceEEechhhhhhcc--
Confidence            589999999999999999999998   99998 3433211     122333 222211 1 11245555554432111  


Q ss_pred             CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHH
Q 025293          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~  249 (255)
                       .......+..+++.  -..+.....||+||+||+++|++++.   ++++|||+.+||+...+.+..
T Consensus        76 -~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~  136 (270)
T 3sop_A           76 -NENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKH  136 (270)
T ss_dssp             -CTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHH
Confidence             11111222222220  11223456899999999999999864   999999999999977544443

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.68  E-value=5.1e-18  Score=148.63  Aligned_cols=124  Identities=10%  Similarity=0.011  Sum_probs=75.7

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~  177 (255)
                      ..+||++++|++++|+||||||||||+++|+|+++   |++|+              +.+.+.+.+..  ...+......
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~--------------V~l~g~d~~r~--~a~~ql~~~~  151 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIWA  151 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHHH
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCe--------------EEEEeecccch--hHHHHHHHHH
Confidence            67899999999999999999999999999999997   77774              22222221100  0000001111


Q ss_pred             --HhcCC-CCCcc-HHHHHHHHHhh----------------ccc--CCccCCCCCcccccchhhhhhhccCCc--EEEEc
Q 025293          178 --ARRGA-PWTFN-PLLLLNCLKNL----------------RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVD  233 (255)
Q Consensus       178 --~~~~~-~~~~~-~~~~~~~l~~l----------------~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~--illlD  233 (255)
                        ...++ ++... ......+.+++                ++.  .+.++..||   +||+++|++++.+|+  +|++|
T Consensus       152 ~~~~i~~v~q~~~~~~~~~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD  228 (302)
T 3b9q_A          152 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD  228 (302)
T ss_dssp             HHHTCEEECCC--CCCHHHHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE
T ss_pred             HhcCceEEEecCCccCHHHHHHHHHHHHHHcCCcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe
Confidence              11111 22111 11111222221                111  112334567   899999999999999  99999


Q ss_pred             CCCCCCChhHH
Q 025293          234 GNYLFLDGGVW  244 (255)
Q Consensus       234 ep~~~LD~~~~  244 (255)
                       ||++||+..+
T Consensus       229 -ptsglD~~~~  238 (302)
T 3b9q_A          229 -GNTGLNMLPQ  238 (302)
T ss_dssp             -GGGGGGGHHH
T ss_pred             -CCCCcCHHHH
Confidence             9999998754

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.65  E-value=1.8e-17  Score=146.94  Aligned_cols=92  Identities=11%  Similarity=0.112  Sum_probs=68.4

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      ++++++|.+++|++++|+||||||||||+++|+|+++   |++|             . +.+++.....  +....    
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g-------------~-i~i~~~~e~~--~~~~~----  216 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEER-------------I-ISIEDTEEIV--FKHHK----  216 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSC-------------E-EEEESSCCCC--CSSCS----
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCc-------------E-EEECCeeccc--cccch----
Confidence            4599999999999999999999999999999999996   6555             3 4444432100  00000    


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~  237 (255)
                        ...++                  ..       .+||+||++++++|..+|+++|+|||++
T Consensus       217 --~~i~~------------------~~-------ggg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          217 --NYTQL------------------FF-------GGNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             --SEEEE------------------EC-------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             --hEEEE------------------Ee-------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence              00000                  00       1899999999999999999999999998

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.65  E-value=9.6e-18  Score=138.60  Aligned_cols=130  Identities=23%  Similarity=0.260  Sum_probs=86.1

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (255)
                      .++|+++||+||||||||||+++|+|++.                +..+. +..+.+......++..++   ....++.+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~----------------~~i~~-v~~d~~~~~~~~~~~~~~---~~~~~~~~   62 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG----------------ERVAL-LPMDHYYKDLGHLPLEER---LRVNYDHP   62 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG----------------GGEEE-EEGGGCBCCCTTSCHHHH---HHSCTTSG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC----------------CCeEE-EecCccccCcccccHHHh---cCCCCCCh
Confidence            56899999999999999999999999983                23444 666665432222222111   11111222


Q ss_pred             CCccHHHHHHHHHhhcccC--CccCCCCCcccc----cchhhhhhhccCCcEEEEcCCCCC-------CChhHHHHHHHH
Q 025293          184 WTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLF-------LDGGVWKDVSSM  250 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~--~~~~~~lS~G~k----qrv~la~~l~~~~~illlDep~~~-------LD~~~~~~l~~l  250 (255)
                      ...+...+.+.++.++...  ..+...+|+|++    ||++++++++.++.++++|||+.+       ||++...++...
T Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~  142 (211)
T 3asz_A           63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR  142 (211)
T ss_dssp             GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence            2334455666677666543  234556788864    688888888889999999999988       898888877776


Q ss_pred             HHh
Q 025293          251 FDE  253 (255)
Q Consensus       251 l~~  253 (255)
                      +.+
T Consensus       143 l~r  145 (211)
T 3asz_A          143 LKR  145 (211)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            643

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.64  E-value=2.7e-17  Score=146.97  Aligned_cols=125  Identities=10%  Similarity=0.010  Sum_probs=76.1

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~  177 (255)
                      ..+||++++|++++|+||||||||||+++|+|+++   |++|+              +.+.+.+.+..  ...+......
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~--------------V~l~g~D~~r~--~a~eql~~~~  208 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTK--------------VLMAAGDTFRA--AASDQLEIWA  208 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC--------------EEEECCCCSCH--HHHHHHHHHH
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCE--------------EEEeccccccc--chhHHHHHHH
Confidence            46899999999999999999999999999999997   77664              22222221100  0000001110


Q ss_pred             --HhcCC-CCCcc-HHHHHHHHHhh----------------ccc--CCccCCCCCcccccchhhhhhhccCCc--EEEEc
Q 025293          178 --ARRGA-PWTFN-PLLLLNCLKNL----------------RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVD  233 (255)
Q Consensus       178 --~~~~~-~~~~~-~~~~~~~l~~l----------------~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~--illlD  233 (255)
                        ...++ ++... ......+.+++                ++.  .+.++..||   +||+++|++++.+|+  +|++|
T Consensus       209 ~r~~i~~v~q~~~~~~p~~tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD  285 (359)
T 2og2_A          209 ERTGCEIVVAEGDKAKAATVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD  285 (359)
T ss_dssp             HHHTCEEECCSSSSCCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred             HhcCeEEEEecccccChhhhHHHHHHHHHhCCCHHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence              11111 22211 11111222221                111  112334567   899999999999999  99999


Q ss_pred             CCCCCCChhHHH
Q 025293          234 GNYLFLDGGVWK  245 (255)
Q Consensus       234 ep~~~LD~~~~~  245 (255)
                       ||++||+..+.
T Consensus       286 -pttglD~~~~~  296 (359)
T 2og2_A          286 -GNTGLNMLPQA  296 (359)
T ss_dssp             -GGGGGGGHHHH
T ss_pred             -CCCCCCHHHHH
Confidence             99999987653

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.64  E-value=5.2e-17  Score=133.47  Aligned_cols=168  Identities=11%  Similarity=0.015  Sum_probs=88.5

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh-----cccCCCCCccCC-CCCCCC
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKASSFD-SQVKPP  149 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll-----~~~~p~~G~~~~-~~~~~~  149 (255)
                      .+|+++|+++.|+.   .  ++++  |.+.+|.+++|+|+||||||||++.|+|..     .   |+.|+... +.....
T Consensus         2 ~~l~~~~~~~~~~~---~--~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~---~~~G~~~~~~~~~~~   71 (210)
T 1pui_A            2 TNLNYQQTHFVMSA---P--DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTS---KTPGRTQLINLFEVA   71 (210)
T ss_dssp             ---------CEEEE---S--SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC----------------CCEEEEEEE
T ss_pred             cchhhhhhhheeec---C--CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCcccccc---CCCccceeeEEEEec
Confidence            36899999999973   2  4477  899999999999999999999999999976     4   66675211 000000


Q ss_pred             CeEEEEecCCCCCCCccCCccc----ChHHHHHh-cC---------C--CCCccHHHHHHHHHhhccc---CCccCCCCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAME----DPKEAHAR-RG---------A--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFD  210 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~----~~~~~~~~-~~---------~--~~~~~~~~~~~~l~~l~~~---~~~~~~~lS  210 (255)
                      ..-.++...|+..........+    ........ ..         .  ........+..++...+..   ...+...+|
T Consensus        72 ~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s  151 (210)
T 1pui_A           72 DGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLA  151 (210)
T ss_dssp             TTEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSC
T ss_pred             CCEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCC
Confidence            0001112222211000000000    00011110 00         0  0111112334444444433   134456789


Q ss_pred             cccccc-hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          211 HGVGDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       211 ~G~kqr-v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|++|+ +..+++++.++.++++|||++++|..+..++.+.+.+
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~  195 (210)
T 1pui_A          152 SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDT  195 (210)
T ss_dssp             HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHH
Confidence            999998 7888888888888899999999999999999988865

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.62  E-value=5.4e-17  Score=142.44  Aligned_cols=143  Identities=20%  Similarity=0.338  Sum_probs=91.6

Q ss_pred             CeEEecCchheehhhhccccccccccccc-------------------CCCcEEEEECCCCCcHHHHHHHHHHHhcccCC
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP  136 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i-------------------~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p  136 (255)
                      .+|+++||++.|+.      +++++++.+                   .+|+++||+||||||||||+++|+|++. .+|
T Consensus        36 ~~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~-~~~  108 (308)
T 1sq5_A           36 EDLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS-RWP  108 (308)
T ss_dssp             TTCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT-TST
T ss_pred             cccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh-hCC
Confidence            35899999999964      559999988                   8999999999999999999999999982 012


Q ss_pred             CCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCC-ccCCCCCccccc
Q 025293          137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGD  215 (255)
Q Consensus       137 ~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~~lS~G~kq  215 (255)
                      ++|+           ..++..+++.....   ........ ...+.+...+.......+..+..... ...+.++....+
T Consensus       109 ~~G~-----------i~vi~~d~~~~~~~---~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~  173 (308)
T 1sq5_A          109 EHRR-----------VELITTDGFLHPNQ---VLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYD  173 (308)
T ss_dssp             TCCC-----------EEEEEGGGGBCCHH---HHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTE
T ss_pred             CCCe-----------EEEEecCCccCcHH---HHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccC
Confidence            3331           11244477643110   00000000 11222223344444445544443333 456778877778


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCC
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLD  240 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD  240 (255)
                      |+..+......++++|+|+|++..+
T Consensus       174 ~~~~~~~~~~~~~ivIlEG~~l~~~  198 (308)
T 1sq5_A          174 VIPDGDKTVVQPDILILEGLNVLQS  198 (308)
T ss_dssp             ECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred             cccccceecCCCCEEEECchhhCCC
Confidence            8876555666789999999999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.60  E-value=2.5e-16  Score=140.29  Aligned_cols=146  Identities=12%  Similarity=0.078  Sum_probs=88.3

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++++++.|+.. .+  +++++ |.|.+|+++||+||||||||||+++|+|+..   |+.             |. +
T Consensus        44 ~~i~~~~l~~~~~tg-~~--ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~-------------g~-i  102 (347)
T 2obl_A           44 DPLLRQVIDQPFILG-VR--AIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADI-------------IV-L  102 (347)
T ss_dssp             CSTTCCCCCSEECCS-CH--HHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSE-------------EE-E
T ss_pred             CCeeecccceecCCC-CE--EEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCE-------------EE-E
Confidence            478999999999732 22  66999 9999999999999999999999999999985   444             43 3


Q ss_pred             ecCCCCCCC-cc-CCcccChHHHHHhcCC-CC--CccHHHHH------HHHHhhcc-cCC-----ccCCCCCcccccchh
Q 025293          156 PMDGFHLYL-SQ-LDAMEDPKEAHARRGA-PW--TFNPLLLL------NCLKNLRN-QGS-----VYAPSFDHGVGDPVE  218 (255)
Q Consensus       156 ~~~~~~~~~-~~-l~~~~~~~~~~~~~~~-~~--~~~~~~~~------~~l~~l~~-~~~-----~~~~~lS~G~kqrv~  218 (255)
                      ...|..... .. ...... ........+ .+  ......+.      .+.+.+.. ..+     ..+..||+|| ||++
T Consensus       103 ~~~G~~~~ev~~~i~~~~~-~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~  180 (347)
T 2obl_A          103 ALIGERGREVNEFLALLPQ-STLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVG  180 (347)
T ss_dssp             EEESCCHHHHHHHHTTSCH-HHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHH
T ss_pred             EEecccHHHHHHHHHhhhh-hhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHH
Confidence            333321000 00 000000 000000001 00  00111111      11121111 001     3456789999 8999


Q ss_pred             hhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       219 la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +|   +.+|++      +.|||+.....+.+++.+
T Consensus       181 la---l~~p~~------t~Gldp~~~~~l~~ller  206 (347)
T 2obl_A          181 LA---SGEPDV------RGGFPPSVFSSLPKLLER  206 (347)
T ss_dssp             HH---TTCCCC------BTTBCHHHHHHHHHHHTT
T ss_pred             HH---cCCCCc------ccCCCHHHHHHHHHHHHH
Confidence            88   356666      899999999999999865

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.59  E-value=5.4e-16  Score=145.41  Aligned_cols=139  Identities=11%  Similarity=-0.000  Sum_probs=92.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEe
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (255)
                      .+++++++..|++.. .  +   ++..|.+|++++|+|+||||||||+++++|...   | .|        ..    ++.
T Consensus       257 ~~~~~~l~~g~~~ld-~--v---L~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~-~G--------~~----vi~  314 (525)
T 1tf7_A          257 RSSNVRVSSGVVRLD-E--M---CGGGFFKDSIILATGATGTGKTLLVSRFVENAC---A-NK--------ER----AIL  314 (525)
T ss_dssp             CCCCCEECCSCHHHH-H--H---TTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---T-TT--------CC----EEE
T ss_pred             ccccceeecChHHHH-H--H---hCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---h-CC--------CC----EEE
Confidence            456777777775421 1  1   245899999999999999999999999999985   4 34        11    111


Q ss_pred             cCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       157 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      +....      +. ..........++    ...   ++. ..++  ..+.++..||+||+||+++|+++..+|++||+| 
T Consensus       315 ~~~ee------~~-~~l~~~~~~~g~----~~~---~~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-  378 (525)
T 1tf7_A          315 FAYEE------SR-AQLLRNAYSWGM----DFE---EME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-  378 (525)
T ss_dssp             EESSS------CH-HHHHHHHHTTSC----CHH---HHH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-
T ss_pred             EEEeC------CH-HHHHHHHHHcCC----CHH---HHH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-
Confidence            11111      10 111111112222    111   121 2221  234566789999999999999999999999999 


Q ss_pred             CCCCCChh-----HHHHHHHHHHh
Q 025293          235 NYLFLDGG-----VWKDVSSMFDE  253 (255)
Q Consensus       235 p~~~LD~~-----~~~~l~~ll~~  253 (255)
                      |+++||..     .+..+.+++..
T Consensus       379 p~~~Ld~~~~~~~~~~~i~~ll~~  402 (525)
T 1tf7_A          379 SLSALARGVSNNAFRQFVIGVTGY  402 (525)
T ss_dssp             CHHHHTSSSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHhhCChHHHHHHHHHHHHH
Confidence            99999999     88888888764

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.59  E-value=7.1e-17  Score=148.04  Aligned_cols=146  Identities=16%  Similarity=0.168  Sum_probs=91.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEE
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++++++.|+.. .+  +++++ |.|.+|++++|+||||||||||+++|+|+..   |+             .|. +
T Consensus       130 ~~l~~~~v~~~~~tg-~~--vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~-------------~G~-i  188 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG-VR--AINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---AD-------------VIV-V  188 (438)
T ss_dssp             CTTTSCCCCSBCCCS-CH--HHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CS-------------EEE-E
T ss_pred             CceEEeccceecCCC-ce--EEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CC-------------eEE-E
Confidence            468999999999731 23  56999 9999999999999999999999999999985   44             443 4


Q ss_pred             ecCCCCCCCccCCc-ccC---hHHHHHhcCC-CC-CccHHHHHHHHH-------hhcccC------CccCCCCCcccccc
Q 025293          156 PMDGFHLYLSQLDA-MED---PKEAHARRGA-PW-TFNPLLLLNCLK-------NLRNQG------SVYAPSFDHGVGDP  216 (255)
Q Consensus       156 ~~~~~~~~~~~l~~-~~~---~~~~~~~~~~-~~-~~~~~~~~~~l~-------~l~~~~------~~~~~~lS~G~kqr  216 (255)
                      .+.|.....  .+. .+.   .....+..++ ++ +.......++.+       .+....      -..+..||+|| ||
T Consensus       189 ~~~G~r~~e--v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~~~~~v~~~ld~l~~lS~g~-qr  265 (438)
T 2dpy_A          189 GLIGERGRE--VKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQ-RE  265 (438)
T ss_dssp             EEESCCHHH--HHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEECHHHHHHHH-HH
T ss_pred             EEeceecHH--HHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHhHHHHHHHH-HH
Confidence            444431000  000 000   0111111222 22 111111112221       111100      01234679999 99


Q ss_pred             hhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       217 v~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +++|   +.+|++      +.+||+.....+.+++.+.
T Consensus       266 vslA---l~~p~~------t~glD~~~~~~l~~ll~r~  294 (438)
T 2dpy_A          266 IALA---IGEPPA------TKGYPPSVFAKLPALVERA  294 (438)
T ss_dssp             HHHH---TTCCCC------SSSCCTTHHHHHHHHHTTC
T ss_pred             HHHH---hCCCcc------cccCCHHHHHHHHHHHHHH
Confidence            9988   567877      9999999999999998654

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.57  E-value=1e-15  Score=133.18  Aligned_cols=125  Identities=22%  Similarity=0.270  Sum_probs=84.0

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHH------H
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H  177 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~------~  177 (255)
                      -.++.++||+|++|||||||++.|.+++.   +. |.       ......++.+++|+...   +..++..+.      .
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~   93 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL   93 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence            45789999999999999999999999995   21 10       01234434888886542   111111111      1


Q ss_pred             HhcCCCCCccHHHHHHHHHhhcccC----------CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293          178 ARRGAPWTFNPLLLLNCLKNLRNQG----------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       178 ~~~~~~~~~~~~~~~~~l~~l~~~~----------~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~  242 (255)
                      ...+.+..++...+.+.++.+..+.          ..+-..+||||+||+++|.+...+|+|||+||+++++|+.
T Consensus        94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            1234566677777778888876651          2233466999999999873333389999999999999985

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.57  E-value=3.9e-16  Score=155.86  Aligned_cols=135  Identities=16%  Similarity=0.110  Sum_probs=82.6

Q ss_pred             CeEEecC-----chheehhhhcccccccccccccCC-------CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCC
Q 025293           76 PVVEARC-----MDEVYDALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD  143 (255)
Q Consensus        76 ~~l~v~~-----lsk~y~~~~~~il~l~~isl~i~~-------GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~  143 (255)
                      .+|+++|     |++.|.+. +.  +++|++|.+.+       |++++|+||||||||||||+| |++.   +       
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~-~~--v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~-------  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGD-DF--IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---V-------  814 (1022)
T ss_dssp             CCEEEEEECCCC------CC-CC--CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---H-------
T ss_pred             ceEEEEeccccEEEEEecCC-ce--EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---H-------
Confidence            4689999     99999321 33  55999999987       999999999999999999999 9874   1       


Q ss_pred             CCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh
Q 025293          144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       144 ~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l  223 (255)
                          ....|.++.....     .+++.+.+.   ...+..+            .    .......|++++++ +++++++
T Consensus       815 ----~aqiG~~Vpq~~~-----~l~v~d~I~---~rig~~d------------~----~~~~~stf~~em~~-~a~al~l  865 (1022)
T 2o8b_B          815 ----MAQMGCYVPAEVC-----RLTPIDRVF---TRLGASD------------R----IMSGESTFFVELSE-TASILMH  865 (1022)
T ss_dssp             ----HHTTTCCEESSEE-----EECCCSBEE---EECC-------------------------CHHHHHHHH-HHHHHHH
T ss_pred             ----HhheeEEeccCcC-----CCCHHHHHH---HHcCCHH------------H----HhhchhhhHHHHHH-HHHHHHh
Confidence                0112211222211     122222210   0111110            0    01123456777665 8999999


Q ss_pred             ccCCcEEEEcCCCCCCChhHH-HHHHHHHHh
Q 025293          224 GLQHKVVIVDGNYLFLDGGVW-KDVSSMFDE  253 (255)
Q Consensus       224 ~~~~~illlDep~~~LD~~~~-~~l~~ll~~  253 (255)
                      +.+|+++|+|||+.|+|+... ..++++++.
T Consensus       866 a~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~  896 (1022)
T 2o8b_B          866 ATAHSLVLVDELGRGTATFDGTAIANAVVKE  896 (1022)
T ss_dssp             CCTTCEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCChHHHHHHHHHHHHH
Confidence            999999999999999998864 445666654

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.57  E-value=1.6e-16  Score=138.95  Aligned_cols=138  Identities=13%  Similarity=0.073  Sum_probs=61.7

Q ss_pred             cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHH-hcccCCCCCccCCCCCC-----CCCeEEE
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVK-----PPDVATV  154 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl-l~~~~p~~G~~~~~~~~-----~~~~g~~  154 (255)
                      .||++.|++.  .  ++++++|+|      +|+|+||+|||||+++|.|. +.   |++|..+.+...     ....+..
T Consensus         2 ~~l~~~~~~~--~--~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~   68 (301)
T 2qnr_A            2 SNLPNQVHRK--S--VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE   68 (301)
T ss_dssp             --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred             CCCcceECCE--E--EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence            4789999873  3  559999988      99999999999999999987 54   777721111100     1112322


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      +..++...   .+++.+...+..... ....     ...+.+.+....+.++..+|+|++||+.+|++++    ++++||
T Consensus        69 ~q~~~~~~---~ltv~Dt~g~~~~~~-~~e~-----~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde  135 (301)
T 2qnr_A           69 IEERGVKL---RLTVVDTPGYGDAIN-CRDC-----FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS  135 (301)
T ss_dssp             EC---CCE---EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred             ecCCCccc---CcchhhhhhhhhhcC-cHHH-----HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence            22222211   134444433321110 0000     0111111111123556789999999999998875    999999


Q ss_pred             CCCC-CChhHH
Q 025293          235 NYLF-LDGGVW  244 (255)
Q Consensus       235 p~~~-LD~~~~  244 (255)
                      |+.. ||+...
T Consensus       136 Pt~~~Ld~~~~  146 (301)
T 2qnr_A          136 PFGHGLKPLDV  146 (301)
T ss_dssp             SSSSSCCHHHH
T ss_pred             CcccCCCHHHH
Confidence            9985 999764

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.57  E-value=2.1e-16  Score=155.80  Aligned_cols=117  Identities=18%  Similarity=0.101  Sum_probs=75.4

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +++|++|++++|++++|+||||||||||||+|+++.-.  +..|..+     ...... +.....        ..     
T Consensus       662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~~v-----pa~~~~-i~~~d~--------i~-----  720 (918)
T 3thx_B          662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGSYV-----PAEEAT-IGIVDG--------IF-----  720 (918)
T ss_dssp             CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTCCB-----SSSEEE-EECCSE--------EE-----
T ss_pred             ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCccc-----cchhhh-hhHHHH--------HH-----
Confidence            55999999999999999999999999999999876520  1111100     000000 110000        00     


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHH-HHHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMFD  252 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~-~ll~  252 (255)
                        ...+.            .++    .......||+||++++.++++ +.+|+++|||||++|+|+.....+. .+++
T Consensus       721 --~~ig~------------~d~----l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~  779 (918)
T 3thx_B          721 --TRMGA------------ADN----IYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLE  779 (918)
T ss_dssp             --EEC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             --HhCCh------------HHH----HHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence              00010            001    122356789999999998888 6799999999999999999887776 5554

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.55  E-value=1.8e-15  Score=129.71  Aligned_cols=112  Identities=13%  Similarity=0.086  Sum_probs=72.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCccCCCCCCCCCeEEEE
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KASSFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~-~G~~~~~~~~~~~~g~~i  155 (255)
                      ++++++|++.  .      +|++++  +++|++++|+||||||||||+++|+|+++   |+ +|+              +
T Consensus         5 ~~~l~~l~~~--~------vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~--------------I   57 (261)
T 2eyu_A            5 IPEFKKLGLP--D------KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYH--------------I   57 (261)
T ss_dssp             -CCGGGSSCC--T------HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCE--------------E
T ss_pred             CCChHHCCCH--H------HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCE--------------E
Confidence            4677888753  2      569998  89999999999999999999999999996   55 553              2


Q ss_pred             ecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcC
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDe  234 (255)
                      .+++.....  ..  ..      ...+ .+           ..+++.    ..      .-|++++++|..+|+++++||
T Consensus        58 ~~~g~~i~~--~~--~~------~~~~v~q-----------~~~gl~----~~------~l~~~la~aL~~~p~illlDE  106 (261)
T 2eyu_A           58 ITIEDPIEY--VF--KH------KKSIVNQ-----------REVGED----TK------SFADALRAALREDPDVIFVGE  106 (261)
T ss_dssp             EEEESSCCS--CC--CC------SSSEEEE-----------EEBTTT----BS------CHHHHHHHHHHHCCSEEEESC
T ss_pred             EEcCCccee--ec--CC------cceeeeH-----------HHhCCC----HH------HHHHHHHHHHhhCCCEEEeCC
Confidence            222221100  00  00      0000 00           011111    01      127999999999999999999


Q ss_pred             CCCCCChhHHHHHHH
Q 025293          235 NYLFLDGGVWKDVSS  249 (255)
Q Consensus       235 p~~~LD~~~~~~l~~  249 (255)
                      |+   |+.....+.+
T Consensus       107 p~---D~~~~~~~l~  118 (261)
T 2eyu_A          107 MR---DLETVETALR  118 (261)
T ss_dssp             CC---SHHHHHHHHH
T ss_pred             CC---CHHHHHHHHH
Confidence            99   9887655544

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.55  E-value=1.5e-14  Score=128.37  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=44.9

Q ss_pred             ccCCCCCccccc------chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       204 ~~~~~lS~G~kq------rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .++..|||||+|      |+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~  299 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER  299 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            456789999999      66788888889999999999999999999999998865

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.54  E-value=5.1e-15  Score=128.64  Aligned_cols=41  Identities=12%  Similarity=0.124  Sum_probs=37.7

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      +|+++++.+++|++++|+||||||||||++.|+|.+.   |++|
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~---~~~G   64 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG---TAMG   64 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH---HTSC
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH---HHcC
Confidence            5699999999999999999999999999999999996   5555

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.54  E-value=4.6e-17  Score=133.26  Aligned_cols=48  Identities=8%  Similarity=0.018  Sum_probs=39.2

Q ss_pred             CCCCCcccccchh-hhh---hhccCCcEEEEcC--CCCCCChhHHHHHHHHHHh
Q 025293          206 APSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       206 ~~~lS~G~kqrv~-la~---~l~~~~~illlDe--p~~~LD~~~~~~l~~ll~~  253 (255)
                      ...+|+||++++. +.+   |+..+|++||+||  |+..+|+...+.+.++++.
T Consensus        81 ~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~  134 (189)
T 2i3b_A           81 VVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST  134 (189)
T ss_dssp             EECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred             EEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence            3457899998874 444   5788999999999  8999999999999988864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.53  E-value=2.1e-17  Score=136.69  Aligned_cols=34  Identities=32%  Similarity=0.473  Sum_probs=25.7

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|  .+|++|++++|+||||||||||+|+|+|++
T Consensus        11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             ----------CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3477  789999999999999999999999999998

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.53  E-value=2.5e-16  Score=149.96  Aligned_cols=152  Identities=8%  Similarity=0.014  Sum_probs=71.8

Q ss_pred             CeEEecCchheehhhhccccccccc----------ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCc-cCC
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFD  143 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~i----------sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p-~~G~-~~~  143 (255)
                      .+++++||++.|+...++++  +.+          +++++.   +||+|||||||||||++|+|+..   | ++|. .++
T Consensus         9 ~~i~~~~l~~~~~~~~r~ll--~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~   80 (608)
T 3szr_A            9 GSVAENNLCSQYEEKVRPCI--DLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRC   80 (608)
T ss_dssp             -----------CHHHHHHHH--HHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCS
T ss_pred             chhhhhhhhHHHHHHHHHHH--HHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEc
Confidence            35789999999986433332  333          355554   99999999999999999999986   7 6786 222


Q ss_pred             CCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhh
Q 025293          144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       144 ~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~  222 (255)
                      +...     .........      ..       ....++ ++........++.+++..........-.+..++++.++..
T Consensus        81 g~~i-----~~~~~~~~~------~~-------~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~~~~~s~~~i~l~i~  142 (608)
T 3szr_A           81 PLVL-----KLKKLVNED------KW-------RGKVSYQDYEIEISDASEVEKEINKAQNAIAGEGMGISHELITLEIS  142 (608)
T ss_dssp             CEEE-----EEEECSSSS------CC-------EEEESCC---CCCCCHHHHHTTHHHHHHHHHCSSSCCCSCCEEEEEE
T ss_pred             CEEE-----EEecCCccc------cc-------eeEEeeecccccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHhc
Confidence            2110     000000000      00       001111 1111111112222222221100001112233456666677


Q ss_pred             hccCCcEEEEcCC------CCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGN------YLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep------~~~LD~~~~~~l~~ll~~  253 (255)
                      ....|+++|+|||      +++||+..+.++.+++..
T Consensus       143 ~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~  179 (608)
T 3szr_A          143 SRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK  179 (608)
T ss_dssp             ESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred             CCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence            7778999999999      999999999999998875

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.52  E-value=1.5e-15  Score=133.67  Aligned_cols=141  Identities=25%  Similarity=0.398  Sum_probs=102.2

Q ss_pred             cCchheehhhhcccccccccccccCCCc------EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEE
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~Ge------ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (255)
                      +.|++.|++..    ++.+++..+.++.      ++||+||||||||||+++|.+++.. +|+.          ..++. 
T Consensus        64 rll~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~----------~~v~~-  127 (321)
T 3tqc_A           64 RLLSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDH----------PNVEV-  127 (321)
T ss_dssp             HHHHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTC----------CCEEE-
T ss_pred             HHHHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCC----------CeEEE-
Confidence            34566677643    5588888887776      9999999999999999999999841 1122          23443 


Q ss_pred             EecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccC-CccCCCCCcccccchhhhhhhccCCcEEEEc
Q 025293          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (255)
Q Consensus       155 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~~~~~lS~G~kqrv~la~~l~~~~~illlD  233 (255)
                      +.+++++.....+.  .  ......++++..++...+.+.++.+..+. ....+.||.+..+|+......+..++|+|+|
T Consensus       128 i~~D~f~~~~~~l~--~--~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvE  203 (321)
T 3tqc_A          128 ITTDGFLYSNAKLE--K--QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILE  203 (321)
T ss_dssp             EEGGGGBCCHHHHH--H--TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEE
T ss_pred             Eeecccccchhhhh--h--HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEE
Confidence            78888865421110  0  00112356677778888888888887766 6778899999999987656667789999999


Q ss_pred             CCCCCCCh
Q 025293          234 GNYLFLDG  241 (255)
Q Consensus       234 ep~~~LD~  241 (255)
                      ++++..|+
T Consensus       204 Gi~lL~~~  211 (321)
T 3tqc_A          204 GLNILQTG  211 (321)
T ss_dssp             CTTTTCCC
T ss_pred             cccccccc
Confidence            99999987

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.51  E-value=1e-14  Score=132.76  Aligned_cols=137  Identities=12%  Similarity=0.001  Sum_probs=73.9

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc---cCCCCCCCCCe-
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQVKPPDV-  151 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~---~~~~~~~~~~~-  151 (255)
                      .+|+++||++.|++.  .  ++++++|+|      +|+|+||||||||+++|+|...   +..|.   ....   .++. 
T Consensus        10 ~~l~~~~l~~~y~~~--~--vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~---~~t~~   73 (418)
T 2qag_C           10 GYVGFANLPNQVYRK--S--VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRI---KKTVQ   73 (418)
T ss_dssp             -----CCCCCCTTTT--T--CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC--------CCE
T ss_pred             CcEEEEecceeECCE--E--EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCC---cccee
Confidence            478999999999873  3  559999997      9999999999999999999874   44442   1110   1111 


Q ss_pred             ----EEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCC
Q 025293          152 ----ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       152 ----g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                          +.++..++..   ..+++.+++.+.....   .......+...++          ..++.++++|++++++++.+|
T Consensus        74 ~~~i~~v~q~~~~~---~~Ltv~Dt~g~~~~~~---~~~~~~~i~~~i~----------~~~~~~l~qr~~IaRal~~d~  137 (418)
T 2qag_C           74 VEQSKVLIKEGGVQ---LLLTIVDTPGFGDAVD---NSNCWQPVIDYID----------SKFEDYLNAESRVNRRQMPDN  137 (418)
T ss_dssp             EEEEECC------C---EEEEEEECC--------------CHHHHHHHH----------HHHHHHTTTSCC-CCCCCCCC
T ss_pred             eeeEEEEEecCCcc---cceeeeechhhhhhcc---chhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCC
Confidence                1101111111   1134444443322110   0001111222221          134557788999999999999


Q ss_pred             c---EEEEcCCC-CCCChhHH
Q 025293          228 K---VVIVDGNY-LFLDGGVW  244 (255)
Q Consensus       228 ~---illlDep~-~~LD~~~~  244 (255)
                      +   +|++|||+ .+||+...
T Consensus       138 ~~~vlL~ldePt~~~L~~~d~  158 (418)
T 2qag_C          138 RVQCCLYFIAPSGHGLKPLDI  158 (418)
T ss_dssp             -CCEEEEECCC-CCSCCHHHH
T ss_pred             CeeEEEEEecCcccCCCHHHH
Confidence            9   99999999 69998664

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.51  E-value=9.3e-15  Score=141.99  Aligned_cols=112  Identities=23%  Similarity=0.218  Sum_probs=73.9

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +++|++|+   |++++|+||||||||||||+|+|+..  .++.|.++.     ..... +  ........          
T Consensus       568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~vp-----a~~~~-i--~~v~~i~~----------  624 (765)
T 1ewq_A          568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFVP-----AEEAH-L--PLFDGIYT----------  624 (765)
T ss_dssp             CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCBS-----SSEEE-E--CCCSEEEE----------
T ss_pred             EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCceee-----hhccc-e--eeHHHhhc----------
Confidence            56999999   99999999999999999999999862  045553211     00111 1  00000000          


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh--ccCCcEEEEcCC---CCCCChhHH-HHHHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS  249 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l--~~~~~illlDep---~~~LD~~~~-~~l~~  249 (255)
                         ..+..            +++       ...+|+++++++.++.++  +.+|+++|+|||   |++||.... ..+.+
T Consensus       625 ---~~~~~------------d~l-------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~  682 (765)
T 1ewq_A          625 ---RIGAS------------DDL-------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE  682 (765)
T ss_dssp             ---ECCC-------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             ---cCCHH------------HHH-------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence               00100            011       113688999999999998  999999999999   999998775 45666


Q ss_pred             HHH
Q 025293          250 MFD  252 (255)
Q Consensus       250 ll~  252 (255)
                      .+.
T Consensus       683 ~L~  685 (765)
T 1ewq_A          683 ALH  685 (765)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            664

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.50  E-value=1.8e-14  Score=142.45  Aligned_cols=115  Identities=10%  Similarity=0.009  Sum_probs=70.1

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +++|++|++.+|++++|+||||||||||||+|++..-  .+..|..      .|..+..+...+.               
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~~------vpa~~~~~~~~d~---------------  707 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGCF------VPCESAEVSIVDC---------------  707 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTCC------BSEEEEEEECCSE---------------
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCCc------cccccccchHHHH---------------
Confidence            5599999999999999999999999999999954431  0112210      0111111111000               


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhh--ccCCcEEEEcCCCCCCChhHHHHH-HHHHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV-SSMFD  252 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l--~~~~~illlDep~~~LD~~~~~~l-~~ll~  252 (255)
                                        ++..++.. +.....+|+++.++..++.++  +.+|+++|+|||+.|+|+.....+ +.+++
T Consensus       708 ------------------i~~~ig~~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~  768 (934)
T 3thx_A          708 ------------------ILARVGAG-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISE  768 (934)
T ss_dssp             ------------------EEEECC----------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHH
T ss_pred             ------------------HHHhcCch-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence                              00001110 111234666666666666666  889999999999999999887776 55544

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.50  E-value=5.5e-15  Score=117.43  Aligned_cols=55  Identities=20%  Similarity=0.210  Sum_probs=48.8

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      ++.+++++.|++.  .  +++++||+|++|++++|+||||||||||+|+|+|++    |++|+
T Consensus         8 ~~~~~~~~~~g~~--~--~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~   62 (158)
T 1htw_A            8 IPDEFSMLRFGKK--F--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGN   62 (158)
T ss_dssp             ECSHHHHHHHHHH--H--HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSC
T ss_pred             cCCHHHHHHHHHH--H--HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCe
Confidence            4456788999873  2  569999999999999999999999999999999998    88898

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.49  E-value=8e-15  Score=131.07  Aligned_cols=49  Identities=16%  Similarity=0.063  Sum_probs=45.3

Q ss_pred             cCC-CCCcccccchhhhhhhc---------cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          205 YAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       205 ~~~-~lS~G~kqrv~la~~l~---------~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++. .+|+||+||+++|++|+         .+|+||||||||++||+..+..+.+++.+
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~  319 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS  319 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence            344 68999999999999999         89999999999999999999999999865

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.48  E-value=3.9e-15  Score=123.07  Aligned_cols=119  Identities=32%  Similarity=0.492  Sum_probs=72.7

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCC
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~  183 (255)
                      .++|+++||+||||||||||+++|+|++.   |+ |         +..|. +.+++++.....   ..+... ....+.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~~---~~~~~~-~~~~~~~   80 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNRL---LEPRGL-LPRKGAP   80 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHHH---HGGGTC-GGGTTSG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHHH---HHHhcc-cccCCCC
Confidence            57899999999999999999999999995   32 2         24565 788887653210   011000 0112333


Q ss_pred             CCccHHHHHHHHHhhcccC------CccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHH
Q 025293          184 WTFNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD  246 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~------~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~  246 (255)
                      ..++...+...+..+....      .......|+|++|+++++      ++++++|++++.+|++.+..
T Consensus        81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~------~~~~i~eg~~~l~de~~~~~  143 (208)
T 3c8u_A           81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE------CRVAIIEGNYLLFDAPGWRD  143 (208)
T ss_dssp             GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTT------CCEEEEEESSTTBCSTTGGG
T ss_pred             chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCC------CcEEEECCceeccCCchhHH
Confidence            4444444455555543331      122234688999988743      36677777777777654433

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.47  E-value=1.4e-15  Score=142.60  Aligned_cols=57  Identities=11%  Similarity=0.190  Sum_probs=45.2

Q ss_pred             CeEEecCchheehhhhccccccccccc-ccCCCcEEEEECCCCCcHHHHHHH--HHHHhcccCCCCC
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKA  139 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~--L~Gll~~~~p~~G  139 (255)
                      .+++.+++.+.+++.  +  +|++++| .|++|++++|+||||||||||+++  ++|+++   |++|
T Consensus        11 ~~~~~~~~~~~~~g~--~--~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g   70 (525)
T 1tf7_A           11 NNSEHQAIAKMRTMI--E--GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEP   70 (525)
T ss_dssp             ---CCSSCCEECCCC--T--THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCC
T ss_pred             CCccccccccccCCc--h--hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCC
Confidence            456777776655552  2  6699999 999999999999999999999999  789995   5555

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.44  E-value=3.7e-14  Score=117.91  Aligned_cols=132  Identities=16%  Similarity=0.140  Sum_probs=75.4

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      ++++.++..+.... .  ++.   =-|++|++++|+||||||||||+++|+|...   +..|..      ....+. +.+
T Consensus         2 ~~~~~i~tG~~~LD-~--~l~---ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~g------~~~~~~-i~~   65 (231)
T 4a74_A            2 ATIGRISTGSKSLD-K--LLG---GGIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEEG------GLNGSV-IWI   65 (231)
T ss_dssp             CCCCEECCSCHHHH-H--HTT---SSEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGGT------CCSCEE-EEE
T ss_pred             CcCCccCCCChhHH-h--Hhc---CCCCCCcEEEEECCCCCCHHHHHHHHHHHHh---cccccC------CCCCEE-EEE
Confidence            45667777775532 1  222   2688999999999999999999999999764   433210      112222 444


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccc-cchhhhhhh-------ccCCcE
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG-DPVEDDILV-------GLQHKV  229 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~k-qrv~la~~l-------~~~~~i  229 (255)
                      ++....    . .+.........++.       ..++++++.+..     .++.+++ +.+..+..+       ..+|++
T Consensus        66 ~~~~~~----~-~~~i~~~~~~~~~~-------~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  128 (231)
T 4a74_A           66 DTENTF----R-PERIREIAQNRGLD-------PDEVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKL  128 (231)
T ss_dssp             ESSSCC----C-HHHHHHHHHHTTSC-------HHHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSCEEE
T ss_pred             ECCCCC----C-HHHHHHHHHHcCCC-------HHHHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCceeE
Confidence            443211    1 11222333333322       115667665432     2333332 223333333       348999


Q ss_pred             EEEcCCCCCCChh
Q 025293          230 VIVDGNYLFLDGG  242 (255)
Q Consensus       230 lllDep~~~LD~~  242 (255)
                      +++|||++++|+.
T Consensus       129 lilDe~~~~l~~~  141 (231)
T 4a74_A          129 LIVDSLTSHFRSE  141 (231)
T ss_dssp             EEEETSSHHHHHH
T ss_pred             EEECChHHHhccc
Confidence            9999999999983

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.42  E-value=3e-13  Score=116.60  Aligned_cols=130  Identities=15%  Similarity=0.078  Sum_probs=78.2

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcC
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~  181 (255)
                      .+++|++++|+||||||||||++.|++.+.     .|. .++....  ..+.++.+....      +. +.........+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~--~~~~v~~~~~e~------~~-~~~~~r~~~~g   91 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGEL--PTGPVIYLPAED------PP-TAIHHRLHALG   91 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCC--CCCCEEEEESSS------CH-HHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccC--CCccEEEEECCC------CH-HHHHHHHHHHH
Confidence            477999999999999999999999999773     344 2221111  111112221111      11 11111111122


Q ss_pred             CCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCC--CCChhHH---HHHHHHH
Q 025293          182 APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGGVW---KDVSSMF  251 (255)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~--~LD~~~~---~~l~~ll  251 (255)
                      .  .........+++++.+.  ....+..||+|+.+++   ++++.+|+++|+|||++  ++|+...   .++...|
T Consensus        92 ~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L  163 (279)
T 1nlf_A           92 A--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM  163 (279)
T ss_dssp             T--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred             h--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence            1  22233445667777664  3456788999997765   46677999999999999  8998554   4444444

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.41  E-value=2.9e-15  Score=132.97  Aligned_cols=59  Identities=24%  Similarity=0.273  Sum_probs=53.0

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      |.+|+++++++.|+...    ++++++|++.+|++++|+|+||||||||+++|+|++.   |++|+
T Consensus        27 i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~   85 (337)
T 2qm8_A           27 ITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHK   85 (337)
T ss_dssp             HHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred             HHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCE
Confidence            45689999999998633    5599999999999999999999999999999999997   88887

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.39  E-value=5.2e-14  Score=116.88  Aligned_cols=134  Identities=9%  Similarity=0.051  Sum_probs=76.4

Q ss_pred             ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~  174 (255)
                      .|+++.. .+++|++++|+||||||||||++.|++...   +..|             .++.+. ...     +. +...
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~-------------~v~~~~-~~~-----~~-~~~~   67 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGD-------------PCIYVT-TEE-----SR-DSII   67 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTC-------------CEEEEE-SSS-----CH-HHHH
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCC-------------eEEEEE-ccc-----CH-HHHH
Confidence            4588887 899999999999999999999999998874   3333             111111 110     11 1111


Q ss_pred             HHHHhcCCC-CCccHHHHHHHHHhhcc--cCCccCCCCCcccccchhhhhhhccCCc--EEEEcCCCCCC--ChhHHHHH
Q 025293          175 EAHARRGAP-WTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DGGVWKDV  247 (255)
Q Consensus       175 ~~~~~~~~~-~~~~~~~~~~~l~~l~~--~~~~~~~~lS~G~kqrv~la~~l~~~~~--illlDep~~~L--D~~~~~~l  247 (255)
                      ......++. +...... ..+++.+..  .........|.++.++...+.+...+|+  ++++|||++++  |+..+..+
T Consensus        68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~  146 (235)
T 2w0m_A           68 RQAKQFNWDFEEYIEKK-LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI  146 (235)
T ss_dssp             HHHHHTTCCCGGGBTTT-EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred             HHHHHhcchHHHHhhCC-EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence            111122321 1100000 000000000  0000112337777777666666667999  99999999777  99888888


Q ss_pred             HHHHHh
Q 025293          248 SSMFDE  253 (255)
Q Consensus       248 ~~ll~~  253 (255)
                      .+.+.+
T Consensus       147 ~~~l~~  152 (235)
T 2w0m_A          147 SYYLKR  152 (235)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            777654

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.37  E-value=4.1e-13  Score=131.12  Aligned_cols=116  Identities=13%  Similarity=0.043  Sum_probs=67.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~  175 (255)
                      +++|++|+ ++|++++|+||||||||||||+|+|+...  ...|..+.     ..... +.+  ....      .     
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~vp-----a~~~~-i~~--~~~i------~-----  654 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYVP-----AQKVE-IGP--IDRI------F-----  654 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCBS-----SSEEE-ECC--CCEE------E-----
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCcccc-----hhccc-cee--HHHH------H-----
Confidence            56999999 99999999999999999999999998520  12231100     00000 100  0000      0     


Q ss_pred             HHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHH-HHHHH
Q 025293          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV-SSMFD  252 (255)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l-~~ll~  252 (255)
                        ...+.            .+++.    .....+|.++++ ++.+...+.+|+++|+|||+.|+|+.....+ +++++
T Consensus       655 --~~~~~------------~d~l~----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~  713 (800)
T 1wb9_A          655 --TRVGA------------ADDLA----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAE  713 (800)
T ss_dssp             --EEEC---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHH
T ss_pred             --hhCCH------------HHHHH----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHH
Confidence              00010            01111    112346666654 4444556789999999999999998766654 45554

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.36  E-value=5.5e-14  Score=128.05  Aligned_cols=55  Identities=18%  Similarity=0.253  Sum_probs=47.1

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .++++++++.|+...    +|+++ +. .+|++++|+|||||||||||++|+|++.   |++|+
T Consensus       143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~  197 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERN  197 (418)
T ss_dssp             CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSC
T ss_pred             CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence            567888988887633    45888 54 8999999999999999999999999997   88887

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.35  E-value=2.9e-13  Score=118.46  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=29.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +|++++|+||||||||||+++|+|+++   |++|+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~  132 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKK  132 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCE
Confidence            699999999999999999999999997   77664

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.34  E-value=6.3e-14  Score=125.54  Aligned_cols=133  Identities=9%  Similarity=0.041  Sum_probs=75.8

Q ss_pred             cccccccCC--CcEEEEECCCCCcHHHHHHHHHHHhcccCCCC----Cc-cCCCCCCCCCeEEEEecCCCCCCCccCCcc
Q 025293           98 SALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----AS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAM  170 (255)
Q Consensus        98 ~~isl~i~~--GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~----G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~  170 (255)
                      ..|++.|.+  |++++|+||||||||||+++|+|++.   |++    |+ .+++.           .++....   +...
T Consensus       159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~-----------~~~~~~~---~~~~  221 (365)
T 1lw7_A          159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEK-----------LGGDEQA---MQYS  221 (365)
T ss_dssp             GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHS-----------SSSCTTS---SCTT
T ss_pred             hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhh-----------cCCCccc---CChh
Confidence            779999999  99999999999999999999999996   666    43 11000           0111110   1111


Q ss_pred             cChHHHHHhcCCCCCccHHHHHHHHHhhcccCC----ccCCCCCcccccchhhhhhh-ccCCcEEEEcC---CC------
Q 025293          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY------  236 (255)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~----~~~~~lS~G~kqrv~la~~l-~~~~~illlDe---p~------  236 (255)
                      + ...+...   .+.. .....++.+++.+...    ..+..+++|++++..++.++ ..+|+++++||   |+      
T Consensus       222 ~-~~~I~~~---~q~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~  296 (365)
T 1lw7_A          222 D-YPQMALG---HQRY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLR  296 (365)
T ss_dssp             T-HHHHHHH---HHHH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-------
T ss_pred             H-HHHHHHH---HHHH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCc
Confidence            1 1000000   1110 0111233444433211    11223456677777776665 35899999998   65      


Q ss_pred             CCCChhHHHHHHHHHH
Q 025293          237 LFLDGGVWKDVSSMFD  252 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~  252 (255)
                      +++|+..+..+.+++.
T Consensus       297 ~sld~~~r~~l~~~l~  312 (365)
T 1lw7_A          297 SLGSQKQRQQFQQLLK  312 (365)
T ss_dssp             ----CCSHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHHH
Confidence            6899999999988884

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.34  E-value=1.1e-12  Score=117.12  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=32.4

Q ss_pred             ccccccc-------ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl-------~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .++++.+       .+.+|++++|+|||||||||||++|+|++.
T Consensus       105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4466665       778899999999999999999999999996

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.32  E-value=5.5e-13  Score=118.84  Aligned_cols=119  Identities=19%  Similarity=0.174  Sum_probs=75.4

Q ss_pred             ccc-ccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHH
Q 025293           98 SAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA  176 (255)
Q Consensus        98 ~~i-sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~  176 (255)
                      +.+ ++.|++|++++|+||||||||||++.|++.... -|+.|        .. -|.++.+++....    . .+.+...
T Consensus       121 D~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~-~~~~G--------g~-~G~vi~i~~e~~~----~-~~~i~~i  185 (349)
T 1pzn_A          121 DKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL-PPEEG--------GL-NGSVIWIDTENTF----R-PERIREI  185 (349)
T ss_dssp             HHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS-CGGGT--------SC-SCEEEEEESSSCC----C-HHHHHHH
T ss_pred             HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-chhcC--------CC-CCeEEEEeCCCCC----C-HHHHHHH
Confidence            444 588999999999999999999999999999720 04442        00 1333555554321    0 1112222


Q ss_pred             HHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhc-------cCCcEEEEcCCCCCCChh
Q 025293          177 HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~-------~~~~illlDep~~~LD~~  242 (255)
                      ....++    ..   .++++++.+...    ..+.++.+++.++..++       .+|++||+|||++++|+.
T Consensus       186 ~q~~~~----~~---~~v~~ni~~~~~----~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~  247 (349)
T 1pzn_A          186 AQNRGL----DP---DEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  247 (349)
T ss_dssp             HHTTTC----CH---HHHGGGEEEEEC----CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred             HHHcCC----CH---HHHhhCEEEEec----CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence            222221    11   155566554321    12567788888887776       689999999999999985

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.28  E-value=8.3e-13  Score=106.14  Aligned_cols=104  Identities=14%  Similarity=0.075  Sum_probs=57.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHH-HhcC----C
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRG----A  182 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~----~  182 (255)
                      ++++|+|+||||||||+++|+|++.   |+.          ...|. +.+++..+..  ++. ......+ ...+    +
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~g----------~~~G~-I~~dg~~i~~--~~~-~~~d~~r~~~ig~~~~~   65 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR---ERG----------LRVAV-VKRHAHGDFE--IDK-EGKDSWKIYNSGADVVI   65 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH---HTT----------CCEEE-EEC---------------CHHHHHHHHTCEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh---hcC----------CceEE-EEEcCccccc--CCc-cchhHHHHHhcCCceEE
Confidence            5899999999999999999999995   431          11454 5555543211  110 0011111 1223    1


Q ss_pred             -CCCcc-------HH---HHHHHHHh-hcccCCcc-CCCCCcccccchhhhhhhccCCcE
Q 025293          183 -PWTFN-------PL---LLLNCLKN-LRNQGSVY-APSFDHGVGDPVEDDILVGLQHKV  229 (255)
Q Consensus       183 -~~~~~-------~~---~~~~~l~~-l~~~~~~~-~~~lS~G~kqrv~la~~l~~~~~i  229 (255)
                       +++..       ..   .+.++++. +. +.+.. ...||+||+||+++||++..+|++
T Consensus        66 ~~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           66 ASPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             ECSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             ECCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence             22110       11   23344444 33 22221 224999999999999999998876

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.28  E-value=5.7e-13  Score=121.21  Aligned_cols=50  Identities=20%  Similarity=0.202  Sum_probs=40.2

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHh
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~Gei--vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..+++.+ ++.|++  .+   ++++||+|++|++  +||+||||||||||+++|+|+.
T Consensus        15 ~~l~~~~-~~~y~~--~~---L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           15 RTVPLAG-HVGFDS--LP---DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             --CCCCC-CC-CC----C---HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             ceEEEee-EEEECC--ee---cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            3567778 899976  33   4999999999999  9999999999999999999974

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.26  E-value=1.4e-12  Score=115.64  Aligned_cols=157  Identities=32%  Similarity=0.560  Sum_probs=111.4

Q ss_pred             cccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhcccC--------------------------------------
Q 025293           96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW--------------------------------------  135 (255)
Q Consensus        96 ~l~~isl~i~~Gei--vgLiGpNGsGKSTLLk~L~Gll~~~~--------------------------------------  135 (255)
                      +++.+++.+++|++  ++|+|++||||||+.++|++.+...+                                      
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i   90 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM   90 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence            44889999999999  99999999999999999999764211                                      


Q ss_pred             -CCCCccC-----------------------------CCC-------------CCC---C---CeEEEEecCCCCCCCcc
Q 025293          136 -PQKASSF-----------------------------DSQ-------------VKP---P---DVATVLPMDGFHLYLSQ  166 (255)
Q Consensus       136 -p~~G~~~-----------------------------~~~-------------~~~---~---~~g~~i~~~~~~~~~~~  166 (255)
                       ...|+.+                             ++.             ...   +   ....++.+|||+.....
T Consensus        91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~  170 (359)
T 2ga8_A           91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC  170 (359)
T ss_dssp             HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred             HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence             0011100                             000             000   0   13456889999987665


Q ss_pred             CCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-----------------------------CCccCCCCCcccccch
Q 025293          167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       167 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-----------------------------~~~~~~~lS~G~kqrv  217 (255)
                      ++...+......++|.|..++...+...++.|.-+                             ....+|.|+.....++
T Consensus       171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~  250 (359)
T 2ga8_A          171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT  250 (359)
T ss_dssp             HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred             HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence            55544444556678888888888777777666443                             2345778898888888


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHH
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~  252 (255)
                      .-...+...++++|+|++.+.++...|..+.++++
T Consensus       251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D  285 (359)
T 2ga8_A          251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLA  285 (359)
T ss_dssp             EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred             CCceEecCCCCEEEEEeehhhccccchhhhhhccc
Confidence            77666666679999999888899777888888887

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.24  E-value=2.1e-13  Score=115.36  Aligned_cols=44  Identities=9%  Similarity=-0.055  Sum_probs=34.9

Q ss_pred             CccCCCCCcccccchhhhhhh-ccCCcEEEEc----CCCCCCChhHHHHHHHHHHh
Q 025293          203 SVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD----GNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la~~l-~~~~~illlD----ep~~~LD~~~~~~l~~ll~~  253 (255)
                      .+++..+||    |+   +++ +.+|+++++|    |||++||+.....+.+.+..
T Consensus       147 ~r~~~~lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~  195 (246)
T 2bbw_A          147 RRWIHPPSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ  195 (246)
T ss_dssp             TEEEETTTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred             cCCCcCCCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence            344567887    55   455 7899999999    99999999988888877754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.21  E-value=7e-12  Score=112.16  Aligned_cols=58  Identities=24%  Similarity=0.357  Sum_probs=46.2

Q ss_pred             EecCchhe---ehhhhcccc-------cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293           79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus        79 ~v~~lsk~---y~~~~~~il-------~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      +++++++.   |+...+.++       ++++++|.|++|++++|+||||||||||+++|+|+++   |++|
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g  204 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQR  204 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSC
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCce
Confidence            56777777   753212222       3399999999999999999999999999999999996   5555

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.20  E-value=1.6e-11  Score=98.66  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=29.2

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|.+.+|+.++|+||||+|||||+++|++.+.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46677899999999999999999999999984

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.19  E-value=4.9e-12  Score=102.31  Aligned_cols=28  Identities=36%  Similarity=0.478  Sum_probs=25.8

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .+++|++++|+||||||||||+++|+|.
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            4779999999999999999999999996

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.17  E-value=5e-11  Score=98.14  Aligned_cols=110  Identities=17%  Similarity=0.098  Sum_probs=65.8

Q ss_pred             ccccccc-ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChH
Q 025293           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (255)
Q Consensus        96 ~l~~isl-~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~  174 (255)
                      .|+++.. .+++|++++|+||||||||||++.|++ ..               ..   .++.++....    .+. +...
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~---------------~~---~v~~i~~~~~----~~~-~~~~   63 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS---------------GK---KVAYVDTEGG----FSP-ERLV   63 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH---------------CS---EEEEEESSCC----CCH-HHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc---------------CC---cEEEEECCCC----CCH-HHHH
Confidence            3466655 689999999999999999999999999 42               11   1223322210    111 1111


Q ss_pred             HHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCccc--ccchhhhhhhccC-CcEEEEcCCCCCCChh
Q 025293          175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV--GDPVEDDILVGLQ-HKVVIVDGNYLFLDGG  242 (255)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~--kqrv~la~~l~~~-~~illlDep~~~LD~~  242 (255)
                      ......+.    ..   .++++++.      +...+.++  ++++..+++++.. |+++|+|||++.+|..
T Consensus        64 ~~~~~~~~----~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~  121 (220)
T 2cvh_A           64 QMAETRGL----NP---EEALSRFI------LFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE  121 (220)
T ss_dssp             HHHHTTTC----CH---HHHHHHEE------EECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred             HHHHhcCC----Ch---HHHhhcEE------EEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence            11112221    11   12334432      22344554  4567777788765 9999999999999974

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.16  E-value=2e-11  Score=112.65  Aligned_cols=45  Identities=29%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCC
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~  144 (255)
                      +|+++||+|++ ++++|+|||||||||||++|+|+++   |++|+ .+++
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g   64 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRN   64 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCC
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECC
Confidence            66999999999 9999999999999999999999998   99999 4544

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.16  E-value=1.2e-11  Score=97.00  Aligned_cols=51  Identities=10%  Similarity=0.121  Sum_probs=46.4

Q ss_pred             CccCCCCCcccccchhhh------hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       203 ~~~~~~lS~G~kqrv~la------~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +.++..|||||+||+++|      ++++.+|+++|+||||++||+..+..+.+++.+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  108 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER  108 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHH
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            456789999999999876      788899999999999999999999999999875

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.16  E-value=2.3e-11  Score=105.93  Aligned_cols=130  Identities=11%  Similarity=-0.009  Sum_probs=79.6

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEec
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (255)
                      +.++++++.|+..    .  ++++|+  +|++++|+|+||+||||++..|++.+.   +..|             . +.+
T Consensus        77 ~~~~~l~~~~~~~----~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~-------------~-v~l  131 (295)
T 1ls1_A           77 TVYEALKEALGGE----A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGR-------------R-PLL  131 (295)
T ss_dssp             HHHHHHHHHTTSS----C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTC-------------C-EEE
T ss_pred             HHHHHHHHHHCCC----C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC-------------e-EEE
Confidence            4567888888652    1  678888  899999999999999999999999995   3333             2 222


Q ss_pred             CCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCC-C
Q 025293          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-Y  236 (255)
Q Consensus       158 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep-~  236 (255)
                      .+.+...   .     ... .           .+..+.+..++.........+..+-+|.+++.+...+++++|+|+| +
T Consensus       132 ~~~d~~~---~-----~~~-~-----------ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~  191 (295)
T 1ls1_A          132 VAADTQR---P-----AAR-E-----------QLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGR  191 (295)
T ss_dssp             EECCSSC---H-----HHH-H-----------HHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred             ecCCccc---H-----hHH-H-----------HHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence            2222211   0     000 0           0111222233221100001112233466777776679999999998 9


Q ss_pred             CCCChhHHHHHHHHHH
Q 025293          237 LFLDGGVWKDVSSMFD  252 (255)
Q Consensus       237 ~~LD~~~~~~l~~ll~  252 (255)
                      +++|.....++.++.+
T Consensus       192 ~~~d~~~~~~l~~~~~  207 (295)
T 1ls1_A          192 LQIDEPLMGELARLKE  207 (295)
T ss_dssp             SSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhh
Confidence            9999877777766654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.15  E-value=1.6e-12  Score=114.80  Aligned_cols=34  Identities=18%  Similarity=0.277  Sum_probs=30.8

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      ..++|++++|+||||||||||+++|+|++.   |++|
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g  158 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGF  158 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCC
Confidence            457899999999999999999999999997   6666

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.14  E-value=4.3e-11  Score=99.84  Aligned_cols=32  Identities=22%  Similarity=0.376  Sum_probs=26.1

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .-..++|++++|+||||||||||+++|+|+++
T Consensus        10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            34578999999999999999999999999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.12  E-value=1.1e-10  Score=91.61  Aligned_cols=27  Identities=30%  Similarity=0.288  Sum_probs=26.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|+.++|+||||+|||||+++|++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999999999984

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.12  E-value=1.8e-12  Score=114.65  Aligned_cols=61  Identities=25%  Similarity=0.360  Sum_probs=48.4

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCC-------cEEEEECCCCCcHHHHHHHHHHHhccc-CCCCCc
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS  140 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~G-------eivgLiGpNGsGKSTLLk~L~Gll~~~-~p~~G~  140 (255)
                      .+++.+++++.|+...    +++++++.+..|       +.++|+||||+|||||+++|+|.+... .+.+|.
T Consensus        17 ~~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~   85 (334)
T 1in4_A           17 QFLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGP   85 (334)
T ss_dssp             CTTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred             HHcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEech
Confidence            3567789999998733    459999999876       899999999999999999999998200 055665

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.11  E-value=6.4e-11  Score=103.59  Aligned_cols=99  Identities=12%  Similarity=0.076  Sum_probs=66.5

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHH
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~  178 (255)
                      .+++...+|++++|+|+|||||||+++.|++.+.   +..|             . +.+.+.+.+.        ...   
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~-------------k-V~lv~~D~~r--------~~a---  147 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK-------------S-VVLAAADTFR--------AAA---  147 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC-------------C-EEEEEECTTC--------HHH---
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCC-------------E-EEEEcccccc--------HHH---
Confidence            3566778999999999999999999999999995   4433             1 1122221110        000   


Q ss_pred             hcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccch---hhhhhhccCCcEEEEcCCCC
Q 025293          179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL  237 (255)
Q Consensus       179 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv---~la~~l~~~~~illlDep~~  237 (255)
                               ...+..+.+.+++..   ++..|+|+.+++   ++++++..+++++|+|+|..
T Consensus       148 ---------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          148 ---------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             ---------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ---------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                     011223344444332   346688999998   78888889999999999874

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.09  E-value=1.2e-10  Score=104.55  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=30.5

Q ss_pred             ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |++++  +++|++++|+||||||||||+++|+|++.
T Consensus       128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            35554  88999999999999999999999999995

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.08  E-value=6.3e-13  Score=120.93  Aligned_cols=126  Identities=19%  Similarity=0.130  Sum_probs=76.6

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCC-CCCCCccCCcccChHH-
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKE-  175 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~-~~~~~~~l~~~~~~~~-  175 (255)
                      ++++|+++.|++++|+|+|||||||||++|+|..    |.-+.+. .....+..|. +.+++ ..+     ...+.+.. 
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~~-ftTl~p~~G~-V~~~~~~~~-----~l~DtpGli  216 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAPYP-FTTLSPNLGV-VEVSEEERF-----TLADIPGII  216 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECCCT-TCSSCCEEEE-EECSSSCEE-----EEEECCCCC
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccCcc-cceecceeeE-EEecCcceE-----EEEeccccc
Confidence            6899999999999999999999999999999985    3211100 0112445565 45443 111     11111100 


Q ss_pred             --HHHhcCCCCCccHHHHHHHHHh-------hcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhHH
Q 025293          176 --AHARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW  244 (255)
Q Consensus       176 --~~~~~~~~~~~~~~~~~~~l~~-------l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~  244 (255)
                        .....++.    . .....++.       +.+. ..++..||+|+++++.++++|+..|.+|++    +.+|....
T Consensus       217 ~~a~~~~~L~----~-~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~  284 (416)
T 1udx_A          217 EGASEGKGLG----L-EFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE  284 (416)
T ss_dssp             CCGGGSCCSC----H-HHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred             cchhhhhhhh----H-HHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence              00001110    0 11111111       1111 345567899999999999999999999999    88998765

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=99.04  E-value=7.9e-13  Score=114.01  Aligned_cols=35  Identities=40%  Similarity=0.491  Sum_probs=32.6

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++++++.+++|  ++|+||||||||||+++|+|...
T Consensus        35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~   69 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG   69 (274)
T ss_dssp             HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT
T ss_pred             HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC
Confidence            559999999999  99999999999999999999873

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=99.01  E-value=5e-11  Score=101.38  Aligned_cols=52  Identities=21%  Similarity=0.330  Sum_probs=35.0

Q ss_pred             CeEEecCc-hhee-hhhhcccccccccccccCC---CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        76 ~~l~v~~l-sk~y-~~~~~~il~l~~isl~i~~---GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++|+++|| ++.| ++  ..  +|+++||+|.+   |++++|+|++||||||+.++|++.+
T Consensus        16 ~~l~~~~~~~~~~~~~--~~--~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEE--QQ--ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             ------------------CH--HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CceEEcceeeEEecCc--ch--hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            47999999 9999 54  33  56999999999   9999999999999999999999977

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.00  E-value=3.1e-11  Score=107.54  Aligned_cols=110  Identities=15%  Similarity=0.109  Sum_probs=60.4

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCcc-CC-CC----CCCCCeEEEEecCCCCCCCccCCccc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FD-SQ----VKPPDVATVLPMDGFHLYLSQLDAME  171 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~-~~-~~----~~~~~~g~~i~~~~~~~~~~~l~~~~  171 (255)
                      +++++.+ +|++++|+||||||||||+|+|+|+...  |+.|++ .. +.    ......+. +..+++.        .+
T Consensus       207 ~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~-v~q~~~l--------~d  274 (358)
T 2rcn_A          207 KPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYH-FPHGGDV--------ID  274 (358)
T ss_dssp             HHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEE-CTTSCEE--------EE
T ss_pred             HHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEE-ECCCCEe--------cC
Confidence            5666654 7999999999999999999999998720  566762 21 11    11112222 2222211        11


Q ss_pred             ChHHHHHhcCCCCCccHH----HHHHHHHhhccc--CCccCCCCCcccccchhhhhhh
Q 025293          172 DPKEAHARRGAPWTFNPL----LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (255)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~----~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l  223 (255)
                      .+...  .+++.. ....    .+.++++.+++.  .+..+..+| |++||+++|.++
T Consensus       275 tpgv~--e~~l~~-l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gl  328 (358)
T 2rcn_A          275 SPGVR--EFGLWH-LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGA  328 (358)
T ss_dssp             CHHHH--TCCCCC-CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred             cccHH--HhhhcC-CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcC
Confidence            11111  112211 1111    123445555544  355667899 999999999875

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.98  E-value=1.4e-10  Score=96.82  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             ccccccccCCCcEEEEECCCCCcHHHHHHHHH-HHh
Q 025293           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI  131 (255)
Q Consensus        97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~-Gll  131 (255)
                      ..++||++++|++++|+||||||||||+++|+ |++
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            38999999999999999999999999999999 998

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.98  E-value=3.4e-10  Score=98.80  Aligned_cols=115  Identities=15%  Similarity=0.016  Sum_probs=66.8

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cC---CC-CCCC-------CCeEEEEecCCCCCCC--ccC
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DS-QVKP-------PDVATVLPMDGFHLYL--SQL  167 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~---~~-~~~~-------~~~g~~i~~~~~~~~~--~~l  167 (255)
                      +++..|++++|+||||||||||+|+|+ ++.   |+.|+ .+   .+ ++..       +..|.++...++....  ..+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l  235 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV  235 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence            456679999999999999999999999 887   99999 33   23 2211       1345433333332111  124


Q ss_pred             CcccCh--HHH------HHhcCC-CCCccHHHHHHHHHhhcccC---CccCCCCCcccccchhhhh
Q 025293          168 DAMEDP--KEA------HARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDI  221 (255)
Q Consensus       168 ~~~~~~--~~~------~~~~~~-~~~~~~~~~~~~l~~l~~~~---~~~~~~lS~G~kqrv~la~  221 (255)
                      ++ +++  .+.      ....+. ........+.++++.+++..   +.++..||+..++++.+|+
T Consensus       236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44 333  111      011221 22222345778888888753   4566778886666667665

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.96  E-value=1.7e-09  Score=90.29  Aligned_cols=28  Identities=14%  Similarity=0.265  Sum_probs=26.4

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -|++|++++|+||||||||||++.|++.
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            4789999999999999999999999995

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.96  E-value=3.7e-10  Score=90.72  Aligned_cols=51  Identities=14%  Similarity=0.117  Sum_probs=45.5

Q ss_pred             ccCCCCCcccccchhhhhhhcc----CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          204 VYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       204 ~~~~~lS~G~kqrv~la~~l~~----~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .++..||||||||+++|++++.    +|+++|||||+++||+.+...+.++|.+.
T Consensus        60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~  114 (173)
T 3kta_B           60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKES  114 (173)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             cccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHh
Confidence            4567899999999999999964    47999999999999999999999998753

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.91  E-value=6.9e-10  Score=102.42  Aligned_cols=39  Identities=21%  Similarity=0.349  Sum_probs=36.4

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      +++||++.+|++++|+|+||||||||+++|+|++.   |++|
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G  322 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGK  322 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTC
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCC
Confidence            78999999999999999999999999999999996   6655

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.91  E-value=6.3e-10  Score=90.66  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |+++.+|++++|+||||||||||+++|+|++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            5678899999999999999999999999997

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.90  E-value=5.4e-10  Score=110.06  Aligned_cols=62  Identities=13%  Similarity=0.082  Sum_probs=54.7

Q ss_pred             HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+..+++.   .++.+..|||||+||++||++|..+|  ++|||||||++||+...+.+.++|++.
T Consensus       486 ~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~L  552 (972)
T 2r6f_A          486 GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSM  552 (972)
T ss_dssp             HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred             HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHH
Confidence            457777775   47788999999999999999999884  999999999999999999999998753

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.90  E-value=1e-09  Score=108.30  Aligned_cols=63  Identities=13%  Similarity=0.092  Sum_probs=55.2

Q ss_pred             HHHHHhhccc---CCccCCCCCcccccchhhhhhhccCCc--EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          192 LNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       192 ~~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~~--illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+.+..+++.   .++++..|||||+|||+||++|+.+|+  +|||||||++||+.....+.++|++.
T Consensus       445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L  512 (916)
T 3pih_A          445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKL  512 (916)
T ss_dssp             HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHT
T ss_pred             HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHH
Confidence            4566677764   467788999999999999999998777  99999999999999999999999764

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.82  E-value=3.3e-09  Score=84.99  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=34.4

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +++++.+.+| +++|+||||||||||+++|.+++.   +..|.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence            5778888898 999999999999999999999986   66664

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.82  E-value=2.2e-09  Score=102.10  Aligned_cols=164  Identities=17%  Similarity=0.185  Sum_probs=88.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc--cCCCCCC---CCCeE
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDSQVK---PPDVA  152 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~--~~~~~~~---~~~~g  152 (255)
                      +.-++++..||...    +++++++.+..|+.++|+||||+|||||+++|++++.   +..+.  .+.....   .+..+
T Consensus        35 ~rp~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~  107 (604)
T 3k1j_A           35 VPEKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIK  107 (604)
T ss_dssp             CCSSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEE
T ss_pred             ccccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEE
Confidence            34456777787633    5599999999999999999999999999999999985   43321  1111100   11111


Q ss_pred             EEEecCCCC-C-------------------CCccCCcccChHHHHHhcCC-CCCc---cHHHHHHHHHhhcccCCccCCC
Q 025293          153 TVLPMDGFH-L-------------------YLSQLDAMEDPKEAHARRGA-PWTF---NPLLLLNCLKNLRNQGSVYAPS  208 (255)
Q Consensus       153 ~~i~~~~~~-~-------------------~~~~l~~~~~~~~~~~~~~~-~~~~---~~~~~~~~l~~l~~~~~~~~~~  208 (255)
                      . +...... .                   ....++...++..  ..... ....   .......++..+.. .......
T Consensus       108 ~-~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v--~~~~~~~~~~v~~~~~~~~~L~G~~~~-~~~~~g~  183 (604)
T 3k1j_A          108 T-VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLV--DNCGRTKAPFIDATGAHAGALLGDVRH-DPFQSGG  183 (604)
T ss_dssp             E-EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEE--CCTTCSSCCEEECTTCCHHHHHCEECC-CCC----
T ss_pred             E-EecchHHHHHHHHHHhhccchhhhhhcccccccccccceee--ccccCCCCCEEEcCCCCHHhcCceEEe-chhhcCC
Confidence            1 1000000 0                   0000000000000  00000 0000   00001111111111 1122256


Q ss_pred             CCcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       209 lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +++|+++++..+.....++.+|++||... |++..+..+..+|++
T Consensus       184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          184 LGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             ccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            88899999888888888999999999777 789999999998864

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.79  E-value=3.4e-10  Score=94.85  Aligned_cols=49  Identities=22%  Similarity=0.293  Sum_probs=41.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .|+++|+...|+.           ++++.+ ++++|+|||||||||||++|+|++.   |++|.
T Consensus         9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~   57 (227)
T 1qhl_A            9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTL   57 (227)
T ss_dssp             EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTT
T ss_pred             EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCe
Confidence            6889999876642           233444 8999999999999999999999998   99997

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.76  E-value=6.8e-09  Score=93.92  Aligned_cols=111  Identities=15%  Similarity=0.145  Sum_probs=59.8

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHH--HHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhc
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~--Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~  180 (255)
                      -|++|++++|+||||||||||++.|+  ++++   ++.|        ... +.++.+++....    .. .....+...+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G--------g~~-~~viyid~E~~~----~~-~rl~~~a~~~  236 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG--------GGE-GKCLYIDTEGTF----RP-VRLVSIAQRF  236 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT--------CCS-SEEEEEESSSCC----CH-HHHHHHHHHT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC--------CCC-CcEEEEeCCCcc----CH-HHHHHHHHHc
Confidence            58899999999999999999999554  4443   2333        111 223555554211    11 1122233344


Q ss_pred             CCCCCccHHHHHHHHHhhcccCCccCCCCCc-ccccchhhhhhh--ccCCcEEEEcCCCCCCChh
Q 025293          181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GVGDPVEDDILV--GLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       181 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~-G~kqrv~la~~l--~~~~~illlDep~~~LD~~  242 (255)
                      ++.       ..++++++.+...     ++. .+.+.+..+..+  ..+|+++++|+|+..+|..
T Consensus       237 gl~-------~~~vleni~~~~~-----~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~  289 (400)
T 3lda_A          237 GLD-------PDDALNNVAYARA-----YNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD  289 (400)
T ss_dssp             TCC-------HHHHHHTEEEEEC-----CSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred             CCC-------hHhHhhcEEEecc-----CChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence            432       1245666554321     222 112222222221  3479999999999999864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.75  E-value=7e-09  Score=101.58  Aligned_cols=62  Identities=13%  Similarity=0.007  Sum_probs=54.1

Q ss_pred             HHHHhhccc---CCccCCCCCcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       193 ~~l~~l~~~---~~~~~~~lS~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +.+..+++.   .+..+..|||||+|||+||++|+.+|  .++||||||++||+...+.+.+++++.
T Consensus       361 ~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L  427 (842)
T 2vf7_A          361 DVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENL  427 (842)
T ss_dssp             HHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHH
Confidence            356667765   46788899999999999999999998  599999999999999999999988653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.73  E-value=2.1e-08  Score=88.38  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=25.0

Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +..+++++|+|||+. ||+..+..+.+++++
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~  160 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEK  160 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence            456899999999999 999999999998875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.72  E-value=1.3e-08  Score=88.57  Aligned_cols=32  Identities=28%  Similarity=0.256  Sum_probs=28.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      .+|++++|+|+||+||||+++.|++.+.   +++|
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~---~~~G  134 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM---LEKH  134 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH---HTTC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC
Confidence            4799999999999999999999999995   4555

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.70  E-value=1.6e-08  Score=81.63  Aligned_cols=38  Identities=8%  Similarity=0.049  Sum_probs=33.0

Q ss_pred             ccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       214 kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .....+|++++.+++++++|  ++++|..+..++.+.+.+
T Consensus       151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            34567889999999999999  999999999999988765

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.70  E-value=8e-09  Score=96.46  Aligned_cols=50  Identities=14%  Similarity=-0.005  Sum_probs=45.7

Q ss_pred             cCCCC-CcccccchhhhhhhccCC--cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       205 ~~~~l-S~G~kqrv~la~~l~~~~--~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++..| ||||+||+++|++++.+|  ++||+|||+++||+.....+.++|.+.
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~  445 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRL  445 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHH
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHH
Confidence            34567 999999999999999999  999999999999999999999998753

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.70  E-value=5.3e-09  Score=85.37  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=35.3

Q ss_pred             cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|++..++...    +.+..++..++|++++|+|||||||||++++|++.+
T Consensus         3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A            3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45666665522    447888999999999999999999999999999998

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.65  E-value=1e-08  Score=83.77  Aligned_cols=27  Identities=41%  Similarity=0.523  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++|++++|+||||||||||+++|+|++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            579999999999999999999999998

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.64  E-value=4.1e-09  Score=98.24  Aligned_cols=42  Identities=19%  Similarity=0.184  Sum_probs=39.2

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +++++++.+++|++++|+|||||||||||++|+|+++   |++|.
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~gi  290 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKV  290 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCE
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCE
Confidence            4589999999999999999999999999999999997   88887

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.64  E-value=1.3e-08  Score=82.83  Aligned_cols=35  Identities=20%  Similarity=0.355  Sum_probs=28.8

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      ++|.+|++++|+|||||||||++++|++.+.   |+.|
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~---~~~~   35 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS---TSYK   35 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTT---CCEE
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC---CCeE
Confidence            4678999999999999999999999999885   5444

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.62  E-value=2.6e-09  Score=96.27  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=26.0

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .+.+|.++||+|+||+|||||+++|+|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            5678999999999999999999999994

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.61  E-value=2.3e-08  Score=81.50  Aligned_cols=36  Identities=33%  Similarity=0.358  Sum_probs=25.3

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+||++.+|++++|+|++||||||+.+.|++.+
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            669999999999999999999999999999999877

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.57  E-value=1.3e-07  Score=76.50  Aligned_cols=36  Identities=8%  Similarity=0.103  Sum_probs=30.4

Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ....|++++..++++++|  ++++|..+..++.+.+.+
T Consensus       129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~  164 (199)
T 2f9l_A          129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT  164 (199)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence            345678888899999999  999999999998887754

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.55  E-value=1.1e-08  Score=86.40  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=40.9

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++++.+.|+...    +++++++.+++|  ++|+||||||||||+++|++..
T Consensus        26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence            35677888886532    459999999999  8999999999999999999987

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.54  E-value=6e-09  Score=90.99  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=27.2

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +++.+|++++|+||||+|||||+|+|+|+..   |..|+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~  203 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNE  203 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccc
Confidence            7788999999999999999999999999987   88888

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.54  E-value=1.9e-08  Score=87.59  Aligned_cols=36  Identities=22%  Similarity=0.285  Sum_probs=30.7

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      |++..|++++|+||||||||||+|+|+|+..   |++|+
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~  199 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSE  199 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC---
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccc
Confidence            5567899999999999999999999999998   99998

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.53  E-value=1.3e-08  Score=87.23  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=41.1

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++++.+.|+...    +++++++.+++|  ++|+||||||||||+++|++.+
T Consensus        50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence            35677888887632    459999999999  8999999999999999999987

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.49  E-value=6.7e-08  Score=77.52  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=25.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|++++|+||||||||||+++|++..
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999999987

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.48  E-value=7.8e-08  Score=78.34  Aligned_cols=31  Identities=26%  Similarity=0.294  Sum_probs=25.3

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+..++|++++|+|+||||||||+++|++.+
T Consensus        23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             -----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            3566789999999999999999999999987

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.47  E-value=7.2e-08  Score=87.85  Aligned_cols=46  Identities=11%  Similarity=0.059  Sum_probs=43.1

Q ss_pred             CCCcccccchhhhhhhc----cCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       208 ~lS~G~kqrv~la~~l~----~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      .|||||++++++|++|+    .+|+++|||||+++||+..+..+.+++.+
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~  382 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR  382 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence            48999999999999998    57999999999999999999999999865

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=98.45  E-value=9.9e-08  Score=88.58  Aligned_cols=48  Identities=27%  Similarity=0.366  Sum_probs=39.5

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++++.+.|.+.  .  ++.++++.+++|  +.|+||||+|||||+++|++..
T Consensus        41 ~~l~~lv~~l~~~--~--~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~   88 (499)
T 2dhr_A           41 EELKEIVEFLKNP--S--RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   88 (499)
T ss_dssp             HHHHHHHHHHHCG--G--GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhch--h--hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHh
Confidence            3456666666552  2  459999999999  8999999999999999999987

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.45  E-value=4.7e-07  Score=73.88  Aligned_cols=34  Identities=29%  Similarity=0.535  Sum_probs=28.6

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++--.+++|.+++|+|++|||||||++.|++.+
T Consensus        12 ~~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           12 SGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             --CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             ccccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3444567899999999999999999999999876

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.44  E-value=7.2e-08  Score=86.49  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=34.3

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++++++.+++|++++|+||||||||||+++|+|..
T Consensus       158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            569999999999999999999999999999999976

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.44  E-value=3.9e-08  Score=87.07  Aligned_cols=58  Identities=22%  Similarity=0.222  Sum_probs=49.0

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .+++.+++.+.|+...    +++++++.+.+|.+++|+|+||+|||||++.|++.+.   +..|+
T Consensus        29 ~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~---~~~~~   86 (341)
T 2p67_A           29 TLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI---REGLK   86 (341)
T ss_dssp             HHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred             hHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH---hcCCe
Confidence            3577888898887633    5599999999999999999999999999999999985   55443

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.42  E-value=1.9e-07  Score=86.25  Aligned_cols=34  Identities=29%  Similarity=0.489  Sum_probs=30.3

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.++++.+++|  +.|+||+|+|||||++.|++..
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHc
Confidence            347888888888  7899999999999999999987

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.41  E-value=1.1e-07  Score=84.93  Aligned_cols=49  Identities=14%  Similarity=0.152  Sum_probs=43.0

Q ss_pred             cCCCCCcccccch------hhhhhhccC-CcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          205 YAPSFDHGVGDPV------EDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       205 ~~~~lS~G~kqrv------~la~~l~~~-~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ++..+|+||+||+      ++|+++..+ |++||+|||+++||+..+..+.+++.+
T Consensus       277 ~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~  332 (371)
T 3auy_A          277 TIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK  332 (371)
T ss_dssp             CGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             chHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            3457999999988      456778889 999999999999999999999999865

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.40  E-value=1.8e-07  Score=85.22  Aligned_cols=49  Identities=16%  Similarity=0.338  Sum_probs=38.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK  138 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~  138 (255)
                      -|+++|+ +.|++.       ..  +++.+|++++|+|||||||||||++|++++.   +.+
T Consensus         6 ~l~~~~~-~~~~~~-------~~--~~~~~~~~~~i~G~nG~GKstll~ai~~~~~---~~~   54 (430)
T 1w1w_A            6 GLELSNF-KSYRGV-------TK--VGFGESNFTSIIGPNGSGKSNMMDAISFVLG---VRS   54 (430)
T ss_dssp             EEEEESC-SSCCSE-------EE--EECTTCSEEEEECSTTSSHHHHHHHHHHHTT---C--
T ss_pred             EEEEeCE-EEECCc-------ee--EEecCCCEEEEECCCCCCHHHHHHHHHhhhc---ccc
Confidence            4788999 788651       12  4467799999999999999999999999986   554

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.35  E-value=1.8e-07  Score=75.17  Aligned_cols=24  Identities=33%  Similarity=0.585  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      |++++|+||||||||||+++|++.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc
Confidence            789999999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.33  E-value=1e-07  Score=80.68  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=29.9

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHH---HHhcccCCCCCc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS  140 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~---Gll~~~~p~~G~  140 (255)
                      .+|++++|+|||||||||++++|+   |+..   +++|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~   60 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGA   60 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCc
Confidence            789999999999999999999999   7665   77777

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.33  E-value=2.4e-07  Score=75.59  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=27.8

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ...+|++++|+|+||||||||+++|++.+.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999999999985

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.33  E-value=1.5e-07  Score=78.52  Aligned_cols=33  Identities=18%  Similarity=0.179  Sum_probs=28.5

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .+-+...++|++++|.|+||||||||+++|+|.
T Consensus        11 ~~~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           11 GTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             -CCBTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCccCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            344556789999999999999999999999886

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.33  E-value=2.5e-07  Score=75.86  Aligned_cols=28  Identities=29%  Similarity=0.513  Sum_probs=26.3

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++|++++|+||||||||||++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            5799999999999999999999999884

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.29  E-value=4.4e-07  Score=71.91  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=25.3

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+|++++|+|+|||||||++++|++.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            469999999999999999999999976

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.28  E-value=4.3e-07  Score=79.74  Aligned_cols=39  Identities=23%  Similarity=0.179  Sum_probs=35.4

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      .+++|.+.+|++++|+|+||+||||++..|++.+.   +..|
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~---~~g~  134 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA---ELGY  134 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH---HTTC
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH---HCCC
Confidence            68999999999999999999999999999999996   5544

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.28  E-value=6.6e-07  Score=74.41  Aligned_cols=34  Identities=21%  Similarity=0.528  Sum_probs=27.0

Q ss_pred             ccc-ccccCCCcEEEEECCCCCcHHHHHHHHH-HHh
Q 025293           98 SAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI  131 (255)
Q Consensus        98 ~~i-sl~i~~GeivgLiGpNGsGKSTLLk~L~-Gll  131 (255)
                      +++ .--+++|++++|+||||||||||+..++ +..
T Consensus        13 D~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~   48 (247)
T 2dr3_A           13 DEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL   48 (247)
T ss_dssp             HHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444 5568899999999999999999965554 444

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.24  E-value=4.9e-07  Score=71.34  Aligned_cols=27  Identities=41%  Similarity=0.646  Sum_probs=24.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .|++++|+|+|||||||++++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            468899999999999999999999873

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.23  E-value=4.3e-07  Score=85.31  Aligned_cols=34  Identities=32%  Similarity=0.342  Sum_probs=31.3

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      .+++|++++|+|+||||||||+++|++.+.   |++|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G  398 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG  398 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence            678999999999999999999999999997   6665

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.22  E-value=7.4e-07  Score=72.81  Aligned_cols=31  Identities=16%  Similarity=0.297  Sum_probs=26.3

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |+...+|++++|+||||||||||++.|++..
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            3445689999999999999999999999987

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=98.21  E-value=5.6e-07  Score=80.56  Aligned_cols=53  Identities=19%  Similarity=0.211  Sum_probs=45.9

Q ss_pred             eEEecCchheehhhhccccccc--------------ccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~--------------~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      -++++||+..|... +.  .++              |+.+.|.+|+.++|+||+|+|||||++.|++.+.
T Consensus       133 ri~Fe~ltp~yP~e-r~--~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          133 KILFENLTPLHANS-RL--RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             SCCTTTSCEESCCS-BC--CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCC-cc--ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            47889999999762 22  347              8999999999999999999999999999999874

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.20  E-value=5.4e-07  Score=82.67  Aligned_cols=37  Identities=16%  Similarity=0.366  Sum_probs=33.2

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .|+++..-+++|+++.|.|++|+|||||+..|++...
T Consensus       192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~  228 (454)
T 2r6a_A          192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA  228 (454)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4577777899999999999999999999999999874

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.16  E-value=4.1e-07  Score=84.53  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=27.9

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .+.+.+.++..+.|+|.+||||||+++.|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            4678888899999999999999999999875

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=98.14  E-value=9.5e-07  Score=82.89  Aligned_cols=50  Identities=26%  Similarity=0.412  Sum_probs=42.3

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +-++++.+.|....    ++.++++++ +|++++|+||||+|||||+++|++.+.
T Consensus        84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            44567788886632    568899998 899999999999999999999999984

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.11  E-value=1.9e-06  Score=67.08  Aligned_cols=30  Identities=23%  Similarity=0.348  Sum_probs=24.5

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++.+| +.+|+|||||||||++..|.-.+
T Consensus        18 ~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           18 VVEFKEG-INLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence            3445444 89999999999999999998655

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.10  E-value=1.1e-06  Score=76.97  Aligned_cols=25  Identities=32%  Similarity=0.401  Sum_probs=23.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      =++++|+|+||||||||+|+|.|+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhc
Confidence            3689999999999999999999985

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.02  E-value=8.7e-06  Score=72.19  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=26.0

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+++|+++.|.||||||||||+..++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999988888765

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=98.01  E-value=3.6e-06  Score=69.23  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=27.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      +.+++|+|++||||||++++|++.+.-.+++.|.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~   38 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   38 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence            5789999999999999999999977211156665

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.99  E-value=4.3e-06  Score=69.73  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=27.2

Q ss_pred             ccccccccC---CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~isl~i~---~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |.++|+.+.   +|.+++|.|++||||||+++.|+..+.
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            466666665   899999999999999999999999984

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.98  E-value=2.8e-06  Score=77.30  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=38.0

Q ss_pred             ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .++|++.|+...      .+++|.  +|++++|+|+|||||||++..|++.+.
T Consensus        79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            356788887521      677887  899999999999999999999999995

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.98  E-value=4.6e-06  Score=66.31  Aligned_cols=28  Identities=29%  Similarity=0.306  Sum_probs=25.5

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|++++|+|++||||||++++|++.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3699999999999999999999999884

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.98  E-value=2.2e-06  Score=74.36  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=38.6

Q ss_pred             ecCchheehhhhcccccccc-cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        80 v~~lsk~y~~~~~~il~l~~-isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+++.+.|++..      .+ ++++++ |.+++++|+||+||||++..|++.+.
T Consensus        77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456777887521      56 888877 99999999999999999999999985

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.95  E-value=5.2e-06  Score=81.04  Aligned_cols=46  Identities=9%  Similarity=-0.088  Sum_probs=36.1

Q ss_pred             ccCCCCCcccccchhhhhhhccCCcEEEEcCCCC-CCChhHHHHHHH
Q 025293          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDGGVWKDVSS  249 (255)
Q Consensus       204 ~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~-~LD~~~~~~l~~  249 (255)
                      ..+...+.|+.+|..++..++.+++++|+||++. ++|......+..
T Consensus       186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~  232 (773)
T 2xau_A          186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLK  232 (773)
T ss_dssp             CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHH
T ss_pred             CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHH
Confidence            3445668999999998888899999999999996 888665444433

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.93  E-value=2.7e-06  Score=74.79  Aligned_cols=48  Identities=27%  Similarity=0.484  Sum_probs=40.3

Q ss_pred             cCchheehhhhcccccccccccccCCCcE--EEEECCCCCcHHHHHHHHHHHhc
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~Gei--vgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++++..||...    +++.++..+..|++  +.|.||+|+||||+++++++.+.
T Consensus        22 ~~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           22 ETLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             SSGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CcHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            45666776532    45889999999998  99999999999999999999875

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.92  E-value=1.5e-05  Score=72.60  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=25.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++.+++++|+||+||||++..|++.+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999999985

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=97.89  E-value=1.9e-05  Score=69.89  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             CCc--EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~Ge--ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.  .+.|.||+|+|||||++.+++.+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            456  899999999999999999999884

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.86  E-value=6.2e-06  Score=66.98  Aligned_cols=21  Identities=48%  Similarity=0.705  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +++|+|+|||||||+.++|++
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            799999999999999999988

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.85  E-value=9.5e-06  Score=64.95  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=26.9

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      ++|+...+|.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            57888999999999999999999999999887

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.83  E-value=8.3e-06  Score=66.06  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +++|+|+|||||||++++|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.83  E-value=9.7e-06  Score=71.85  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=28.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .++.+++|+|++|||||||++.|+|.+.   +..|+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~  104 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK  104 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence            3588999999999999999999999886   66554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.82  E-value=1.3e-05  Score=65.58  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=25.5

Q ss_pred             cccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .++.+.+ .+.+|+|||||||||++..|.-.+.
T Consensus        17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           17 TVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             EEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             eEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            3444544 4899999999999999999987664

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.81  E-value=4.1e-06  Score=78.02  Aligned_cols=35  Identities=20%  Similarity=0.305  Sum_probs=31.8

Q ss_pred             ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++++++++.+| +.+|+|+|||||||||..|..++.
T Consensus        51 ~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg   85 (517)
T 4ad8_A           51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (517)
T ss_dssp             BSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTC
T ss_pred             eeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhc
Confidence            37888999999 999999999999999999998863

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.81  E-value=9.2e-06  Score=72.06  Aligned_cols=46  Identities=13%  Similarity=0.170  Sum_probs=33.5

Q ss_pred             ecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        80 v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      ++++.+.|+.... ..+|++++++++   .++|+|++|||||||++.|+|
T Consensus        11 l~~~~~~~~~~~~-~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           11 IQRACTALGDHGD-SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             TTTTTTSCSSCCS-SCCC----CCCC---EEEEECBTTSSHHHHHHHHHT
T ss_pred             HHHHHHhhCcccc-ccccccccccCC---EEEEECCCCCcHHHHHHHHhC
Confidence            5677788865211 125699999998   899999999999999999999

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.80  E-value=1.6e-05  Score=70.18  Aligned_cols=114  Identities=16%  Similarity=0.097  Sum_probs=68.4

Q ss_pred             cCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCC
Q 025293           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF  160 (255)
Q Consensus        81 ~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~  160 (255)
                      ..+...|..       |+.+.--+.+|+++.|.|++|+|||||+..++....    ..|            ..++.+...
T Consensus        27 ~gi~TG~~~-------LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a----~~g------------~~Vl~fSlE   83 (338)
T 4a1f_A           27 TGIPTGFVQ-------LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL----NDD------------RGVAVFSLE   83 (338)
T ss_dssp             CSBCCSCHH-------HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH----HTT------------CEEEEEESS
T ss_pred             CcccCCChH-------HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----HcC------------CeEEEEeCC
Confidence            456655544       255555789999999999999999999998888763    111            111111111


Q ss_pred             CCCCccCCcccChHHHHH-hcCCCCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCC
Q 025293          161 HLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       161 ~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~L  239 (255)
                            ++..+....... ..++    ....+             .-..||.++.+|+..|...+.+++++|.|+|...+
T Consensus        84 ------ms~~ql~~Rlls~~~~v----~~~~l-------------~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si  140 (338)
T 4a1f_A           84 ------MSAEQLALRALSDLTSI----NMHDL-------------ESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRI  140 (338)
T ss_dssp             ------SCHHHHHHHHHHHHHCC----CHHHH-------------HHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCH
T ss_pred             ------CCHHHHHHHHHHHhhCC----CHHHH-------------hcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcH
Confidence                  121111111100 0111    11111             11368999999999888888888999999987665


Q ss_pred             C
Q 025293          240 D  240 (255)
Q Consensus       240 D  240 (255)
                      +
T Consensus       141 ~  141 (338)
T 4a1f_A          141 E  141 (338)
T ss_dssp             H
T ss_pred             H
Confidence            5

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.78  E-value=1.2e-05  Score=65.40  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=25.9

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ...+|.+++|+||+|||||||.+.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            35689999999999999999999999876

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.77  E-value=1.6e-05  Score=64.98  Aligned_cols=31  Identities=29%  Similarity=0.306  Sum_probs=28.6

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +.+.+|.+++|+|++||||||+.+.|++.+.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5678899999999999999999999999884

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.76  E-value=1.9e-05  Score=62.99  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=27.8

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +...+|.++.|+|++||||||+.+.|+..+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4456899999999999999999999999884

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.74  E-value=5.1e-05  Score=67.20  Aligned_cols=46  Identities=4%  Similarity=-0.207  Sum_probs=31.9

Q ss_pred             CCCCCcccccchhhhhhhccCCcEEEEc-CCCCCCChhHHHHHHHHHH
Q 025293          206 APSFDHGVGDPVEDDILVGLQHKVVIVD-GNYLFLDGGVWKDVSSMFD  252 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~l~~~~~illlD-ep~~~LD~~~~~~l~~ll~  252 (255)
                      ...+++++++.+. +.....++-++++| ++..++|......+.+.+.
T Consensus       229 ~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~  275 (357)
T 2e87_A          229 ISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVH  275 (357)
T ss_dssp             STTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHH
Confidence            3456777777665 44444577788999 8888888877766665554

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.73  E-value=6.3e-06  Score=73.41  Aligned_cols=45  Identities=18%  Similarity=0.141  Sum_probs=35.0

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.+.++.+.|++.  .  ++++++|+|      +|+|++|+|||||++.|.|..
T Consensus        17 ~v~~~~l~~~~~~k--~--~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           17 YVGFANLPNQVHRK--S--VKKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             ----CCHHHHHHTH--H--HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             eEEeccchHHhCCe--e--ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            57899999999873  3  448888877      999999999999999998754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.73  E-value=2.1e-05  Score=67.72  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+.|.||+|+||||+++.|++.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc
Confidence            6899999999999999999999984

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.71  E-value=0.0001  Score=61.83  Aligned_cols=26  Identities=27%  Similarity=0.609  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +--+|+|.|+.||||||+.+.|+..+
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~l   46 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLL   46 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999998866

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.68  E-value=2.3e-05  Score=63.46  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=23.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..+++|+|++||||||+.+.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999987

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.68  E-value=1.7e-05  Score=62.46  Aligned_cols=26  Identities=38%  Similarity=0.434  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|..++|+|++|+|||||++.|+|..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            67899999999999999999999864

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.65  E-value=3.2e-05  Score=64.32  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=24.9

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.+|.+++|+|++||||||+.++|++.+
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            4578999999999999999999999865

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.63  E-value=3.2e-05  Score=61.47  Aligned_cols=27  Identities=41%  Similarity=0.704  Sum_probs=23.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+|.+++|+|++||||||+.+.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999998654

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.63  E-value=0.00017  Score=61.66  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++..+.|.||+|+|||||++.|++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            46788999999999999999999976

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.60  E-value=2.2e-05  Score=68.01  Aligned_cols=27  Identities=26%  Similarity=0.459  Sum_probs=23.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++.+++|+|++|+|||||++.|.|..
T Consensus         6 ~r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            6 SYCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             CEEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            345689999999999999999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.59  E-value=3.4e-05  Score=61.68  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=21.0

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +++++++..+.. .++|+|++|+|||||++.+.+-
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            458888888776 7789999999999999999874

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.54  E-value=4.8e-05  Score=63.84  Aligned_cols=33  Identities=30%  Similarity=0.550  Sum_probs=24.7

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .++++.+++|  +.|.||+|+|||||++.|++...
T Consensus        38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            5556666666  88999999999999999999873

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.51  E-value=4.1e-05  Score=59.68  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|++|+|||||++.++|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999854

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.50  E-value=6.6e-05  Score=59.93  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=23.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+++|+|++|||||||++.|.+.+.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            5899999999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.49  E-value=4.3e-05  Score=64.34  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.. ....+.++.|+|++||||||+.+.|+..+
T Consensus        24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4444 67788999999999999999999999987

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.48  E-value=6.8e-05  Score=58.49  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+|++||||||+.+.|+..+
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l   25 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKEL   25 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999999876

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.46  E-value=5.1e-05  Score=66.16  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=29.9

Q ss_pred             ccccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        97 l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |+++.--+.+|+++.|.|++|+|||||+..++...
T Consensus        58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            36666668999999999999999999998887655

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.46  E-value=2.3e-05  Score=63.24  Aligned_cols=42  Identities=21%  Similarity=0.203  Sum_probs=29.4

Q ss_pred             hheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293           84 DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        84 sk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +..|++. ..  +++++++..+++ .++|+|++|+|||||++.+.+
T Consensus         6 ~~~~~~~-~~--~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            6 DWIYSGF-SS--VLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             --------CH--HHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHH-HH--HHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence            3445553 22  458999998887 578999999999999999876

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.43  E-value=6.1e-05  Score=66.88  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=27.7

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      -+++|+++.|.||+|||||||+..++....
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            377999999999999999999999999874

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.40  E-value=0.0001  Score=60.24  Aligned_cols=24  Identities=42%  Similarity=0.601  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      ++-+++|.|++||||||+++.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999987

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.40  E-value=7.6e-05  Score=58.97  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.++|+|++|+|||||++.++|.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999984

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.34  E-value=8.6e-05  Score=66.14  Aligned_cols=31  Identities=26%  Similarity=0.327  Sum_probs=25.7

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      ++..+++.+| +.+|+|+|||||||+|..|.=
T Consensus        17 ~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           17 VNSRIKFEKG-IVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEECCSE-EEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEecCCC-eEEEECCCCCCHHHHHHHHHH
Confidence            4556666664 899999999999999999985

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.34  E-value=0.00012  Score=61.10  Aligned_cols=26  Identities=31%  Similarity=0.627  Sum_probs=22.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..-+++|.||+||||||+.+.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999999765

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.34  E-value=0.00013  Score=57.47  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=23.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999999876

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.34  E-value=0.00014  Score=57.90  Aligned_cols=27  Identities=22%  Similarity=0.489  Sum_probs=24.4

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999998765

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.34  E-value=0.00012  Score=61.61  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=22.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++|+||+|||||||.+.|++.+
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcC
Confidence            368999999999999999999877

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.33  E-value=0.00014  Score=58.39  Aligned_cols=23  Identities=39%  Similarity=0.733  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+|+.||||||+.+.|+..+
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l   24 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKL   24 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHhc
Confidence            68999999999999999999976

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.32  E-value=8e-05  Score=59.03  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999853

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.32  E-value=0.00015  Score=57.45  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=23.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.++.|.|++||||||+.+.|+-.+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998866

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.32  E-value=0.00014  Score=57.52  Aligned_cols=28  Identities=32%  Similarity=0.502  Sum_probs=24.8

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.++.++.|+|++||||||+.+.|+..+
T Consensus         8 ~~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            8 FMLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             TCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            4567889999999999999999998765

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.31  E-value=0.00012  Score=57.73  Aligned_cols=23  Identities=35%  Similarity=0.489  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.|+|++||||||+.+.|+..+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58999999999999999999877

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.27  E-value=0.00014  Score=56.48  Aligned_cols=19  Identities=37%  Similarity=0.695  Sum_probs=18.3

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEV  127 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L  127 (255)
                      +++|+|++||||||+.+.|
T Consensus         3 ~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            3 VILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             EEEEECCTTSCHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHH
Confidence            7899999999999999999

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.27  E-value=0.00019  Score=64.60  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.9

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .+..|..++|+|+||+|||||++.|+|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4567889999999999999999999987

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.25  E-value=7.4e-05  Score=60.61  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++|.|++||||||+++.|...+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999999883

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.23  E-value=0.00019  Score=57.53  Aligned_cols=25  Identities=40%  Similarity=0.526  Sum_probs=22.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +..+++|+|++||||||+.+.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3568999999999999999999874

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.23  E-value=0.00021  Score=57.42  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+|.+++|.|+.||||||+.+.|+..+
T Consensus         2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            2 SRGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            368899999999999999999998764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.21  E-value=0.00022  Score=56.55  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+++|+|++|||||||+..|+..+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4799999999999999999999873

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.20  E-value=0.00017  Score=69.22  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=27.0

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++.++++..++|+|+||+|||||++.|++...
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~   34 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG   34 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence            45678999999999999999999999998763

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.19  E-value=0.00022  Score=61.56  Aligned_cols=30  Identities=30%  Similarity=0.452  Sum_probs=27.1

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+.++..+.|.||+|+|||||++.|++..
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            456788999999999999999999999976

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.19  E-value=0.00024  Score=56.61  Aligned_cols=28  Identities=29%  Similarity=0.585  Sum_probs=24.8

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..++.+++|+|+.||||||+.+.|+..+
T Consensus         6 m~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            6 LKKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             HTTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999999998765

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.19  E-value=0.00024  Score=57.22  Aligned_cols=23  Identities=39%  Similarity=0.690  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|.|++||||||+.+.|+..+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            89999999999999999999976

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.18  E-value=0.00028  Score=56.89  Aligned_cols=26  Identities=27%  Similarity=0.372  Sum_probs=24.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l   28 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWI   28 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57799999999999999999999877

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.17  E-value=0.00026  Score=56.02  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.++.|+|+.||||||+.+.|+..+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999998876

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.15  E-value=0.00026  Score=57.02  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.|+||+|||||||++.|....
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998765

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.15  E-value=0.00014  Score=58.11  Aligned_cols=31  Identities=26%  Similarity=0.479  Sum_probs=26.3

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ...+..+.+++|+|+.||||||+.+.|+..+
T Consensus         6 ~~~~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            6 MEDLRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3345567899999999999999999998866

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.15  E-value=0.00028  Score=56.99  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+|.+++|.|+.||||||+.+.|+..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999998765

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.15  E-value=0.00024  Score=55.68  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999987

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.13  E-value=0.00031  Score=55.72  Aligned_cols=26  Identities=38%  Similarity=0.547  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.+++|+|+.||||||+.+.|+..+
T Consensus         2 ~~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            2 KPLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999998755

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=97.13  E-value=0.00021  Score=59.22  Aligned_cols=24  Identities=33%  Similarity=0.454  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .++|+|++|+|||||++.|+|...
T Consensus        31 ~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           31 RIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCCc
Confidence            689999999999999999999763

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.11  E-value=0.00033  Score=56.66  Aligned_cols=28  Identities=29%  Similarity=0.370  Sum_probs=24.8

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|.+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            6 ARRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            4578899999999999999999999765

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.09  E-value=0.00031  Score=60.33  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=24.7

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ...|.++.|.||+||||||+.+.|+..+
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4467899999999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=97.06  E-value=0.00024  Score=60.28  Aligned_cols=23  Identities=30%  Similarity=0.456  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|++|||||||++.|+|..
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999975

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.05  E-value=0.00024  Score=56.03  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=19.1

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            57799999999999999999998765

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.04  E-value=0.00026  Score=64.37  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+||+|||||++.|+|..
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            379999999999999999999975

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.01  E-value=0.00041  Score=54.91  Aligned_cols=23  Identities=43%  Similarity=0.553  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.|.|+.||||||+.+.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999877

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.00  E-value=0.00026  Score=63.00  Aligned_cols=44  Identities=5%  Similarity=-0.152  Sum_probs=30.4

Q ss_pred             CCCCCcccccchhhh----hhh-ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          206 APSFDHGVGDPVEDD----ILV-GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       206 ~~~lS~G~kqrv~la----~~l-~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      +..+|+++++++.++    ..+ ..++++    +|++++|..+...+.+.|.+
T Consensus       302 ~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~SA~~g~gi~~L~~~I~~  350 (364)
T 2qtf_A          302 IDKINGDLYKKLDLVEKLSKELYSPIFDV----IPISALKRTNLELLRDKIYQ  350 (364)
T ss_dssp             GGGCCSCHHHHHHHHHHHHHHHCSCEEEE----EECBTTTTBSHHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHHHhcCCCCcE----EEEECCCCcCHHHHHHHHHH
Confidence            345677777776665    444 323343    78999999999998888765

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.00  E-value=0.00079  Score=59.25  Aligned_cols=24  Identities=29%  Similarity=0.699  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++|+||+|||||||.+.|+..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            489999999999999999999877

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.00  E-value=0.00051  Score=56.13  Aligned_cols=26  Identities=42%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|-++.|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            57789999999999999999998866

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.93  E-value=0.00067  Score=54.54  Aligned_cols=27  Identities=41%  Similarity=0.636  Sum_probs=23.9

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..+.+++|+|+.||||||+.+.|+..+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            356789999999999999999998765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.92  E-value=0.00055  Score=54.17  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3478999999999999999999864

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=96.92  E-value=0.0068  Score=55.18  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=24.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++.+++++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999998884

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.90  E-value=0.00049  Score=56.56  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=22.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++.+++|+|+.||||||+.+.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            356789999999999999999998654

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.89  E-value=0.00065  Score=54.61  Aligned_cols=28  Identities=29%  Similarity=0.476  Sum_probs=23.7

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.+..+++|.|+.||||||+.+.|+..+
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3456789999999999999999998654

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.88  E-value=0.00073  Score=53.44  Aligned_cols=25  Identities=40%  Similarity=0.662  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998765

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.88  E-value=0.00037  Score=57.75  Aligned_cols=29  Identities=21%  Similarity=0.418  Sum_probs=24.1

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.+..|+.++|.||+||||||++.++...
T Consensus        71 ~~i~~g~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           71 EAISQNSVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence            34567999999999999999998877643

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.87  E-value=0.00066  Score=55.10  Aligned_cols=23  Identities=39%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.87  E-value=0.0007  Score=53.67  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999876

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.86  E-value=0.0006  Score=53.16  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999876

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.85  E-value=0.00037  Score=60.00  Aligned_cols=26  Identities=27%  Similarity=0.428  Sum_probs=20.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++-++||.|++||||||+.+.|...+
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~l   29 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIF   29 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998865

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.85  E-value=0.00079  Score=52.46  Aligned_cols=24  Identities=38%  Similarity=0.426  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++++|.|+.||||||+.+.|+..+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            689999999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.84  E-value=0.00061  Score=55.74  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=23.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.++.|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l   29 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKY   29 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            45689999999999999999998766

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.84  E-value=0.0008  Score=52.23  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999998866

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.83  E-value=0.00073  Score=51.82  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998854

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.82  E-value=0.00074  Score=60.28  Aligned_cols=32  Identities=28%  Similarity=0.239  Sum_probs=26.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .+..++|+|++|||||||++.|++...   +..+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~   65 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR   65 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence            567789999999999999999999875   55554

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.82  E-value=0.00078  Score=51.33  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57999999999999999998853

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=96.81  E-value=0.00081  Score=59.18  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=26.7

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999999999863

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.81  E-value=0.00064  Score=53.77  Aligned_cols=24  Identities=33%  Similarity=0.580  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999998876

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.81  E-value=0.00075  Score=56.90  Aligned_cols=26  Identities=31%  Similarity=0.531  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.++.|+|++||||||+.+.|+..+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999875

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.80  E-value=0.00055  Score=58.38  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|++|+|||||++.++|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999853

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.79  E-value=0.00072  Score=54.95  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999997654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.79  E-value=0.00074  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.78  E-value=0.00088  Score=51.13  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999988753

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.77  E-value=0.00088  Score=51.18  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.76  E-value=0.00091  Score=51.44  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.76  E-value=0.00092  Score=51.33  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998864

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.75  E-value=0.00082  Score=54.29  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-++||+|+.||||||+.+.|+..+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999998875

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.75  E-value=0.00094  Score=51.90  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A           10 KVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998754

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.74  E-value=0.00077  Score=59.05  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=25.3

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+..+.|.||+|+|||||++.+++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578899999999999999999999874

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.73  E-value=0.0011  Score=54.04  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=24.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999998873

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.73  E-value=0.0022  Score=55.77  Aligned_cols=25  Identities=24%  Similarity=0.636  Sum_probs=22.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+++|+||+|||||||...|+-.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            4588999999999999999998765

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.72  E-value=0.00096  Score=51.79  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-.++|+|+.|+|||||++.+.+..
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45679999999999999999998743

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.72  E-value=0.00099  Score=51.07  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.72  E-value=0.001  Score=50.96  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.71  E-value=0.0012  Score=55.07  Aligned_cols=28  Identities=21%  Similarity=0.292  Sum_probs=24.4

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..++-+++|.|+.||||||+.+.|+..+
T Consensus        26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           26 SKPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             TSCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3467899999999999999999998654

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.71  E-value=0.001  Score=51.59  Aligned_cols=23  Identities=39%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.71  E-value=0.00085  Score=51.56  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.70  E-value=0.00094  Score=51.29  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998753

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.69  E-value=0.0008  Score=52.04  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.69  E-value=0.00097  Score=51.75  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            368999999999999999998853

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.65  E-value=0.0012  Score=52.35  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998854

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.65  E-value=0.00057  Score=53.92  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            457899999999999999998764

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.65  E-value=0.0012  Score=50.57  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.65  E-value=0.00089  Score=51.53  Aligned_cols=23  Identities=43%  Similarity=0.408  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999997643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.64  E-value=0.0013  Score=54.08  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999998755

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.64  E-value=0.0011  Score=56.71  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +..+|+|+|+.||||||+.+.|+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999984

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.64  E-value=0.0012  Score=51.63  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998754

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.63  E-value=0.0012  Score=52.04  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            468999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.63  E-value=0.0012  Score=51.73  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998743

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.62  E-value=0.0012  Score=51.92  Aligned_cols=23  Identities=22%  Similarity=0.252  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.|..
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~   38 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKV   38 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHHhhc
Confidence            58999999999999999999865

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.62  E-value=0.0022  Score=56.07  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++.|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999876

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.62  E-value=0.0013  Score=52.08  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=19.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.++|+|++|+|||||++.+.+-
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999877664

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.61  E-value=0.00064  Score=52.20  Aligned_cols=23  Identities=43%  Similarity=0.403  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.|..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            58999999999999999987643

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.61  E-value=0.00087  Score=52.79  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            378999999999999999998753

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.60  E-value=0.0013  Score=50.21  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47899999999999999998754

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.60  E-value=0.00088  Score=52.98  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      --.++|+|+.|+|||||++.+.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999875

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.60  E-value=0.0012  Score=54.79  Aligned_cols=29  Identities=24%  Similarity=0.350  Sum_probs=22.6

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+|.++.|.|+.||||||+++.|...+.
T Consensus        22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35799999999999999999999998773

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.60  E-value=0.0016  Score=50.06  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC
Confidence            34568999999999999999997743

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.59  E-value=0.0014  Score=51.18  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            368999999999999999998753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.59  E-value=0.0013  Score=58.44  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      |..++|+|.+|+|||||++.|++.
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            457899999999999999999984

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.59  E-value=0.0014  Score=51.71  Aligned_cols=24  Identities=25%  Similarity=0.427  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999998753

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.58  E-value=0.0023  Score=56.22  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.++.|+||.|||||||...|+..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            46789999999999999999998766

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.58  E-value=0.0014  Score=50.70  Aligned_cols=23  Identities=26%  Similarity=0.303  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.57  E-value=0.0016  Score=52.23  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=22.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+.|.||+|+|||||++.|+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6789999999999999999999873

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.57  E-value=0.0017  Score=53.34  Aligned_cols=28  Identities=39%  Similarity=0.510  Sum_probs=25.0

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|.++.|.|+.||||||+++.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999998873

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.56  E-value=0.0013  Score=53.62  Aligned_cols=26  Identities=35%  Similarity=0.500  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|-++.|+|+.||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            4 KKHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999998765

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.56  E-value=0.0013  Score=50.90  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.56  E-value=0.0015  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            68999999999999999998754

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.55  E-value=0.00086  Score=52.06  Aligned_cols=22  Identities=27%  Similarity=0.395  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+.
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~   32 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADN   32 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999998764

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.55  E-value=0.0011  Score=57.64  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=26.6

Q ss_pred             cccccccCCC--cEEEEECCCCCcHHHHHHHHHHHh
Q 025293           98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~isl~i~~G--eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+...+..|  ..+.|.||+|+||||+++.+++.+
T Consensus        47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4444445455  348999999999999999999986

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.53  E-value=0.0013  Score=58.65  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|++|+|||||++.|++..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47999999999999999999975

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.53  E-value=0.0014  Score=53.33  Aligned_cols=25  Identities=40%  Similarity=0.607  Sum_probs=22.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+++|+|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999998865

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.52  E-value=0.0014  Score=50.86  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.52  E-value=0.001  Score=52.29  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998753

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.52  E-value=0.0016  Score=50.58  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.50  E-value=0.0016  Score=52.62  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999865

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.50  E-value=0.0017  Score=51.87  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999998854

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.50  E-value=0.0036  Score=54.40  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..++.|+||+|||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4589999999999999999998876

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.50  E-value=0.0015  Score=51.10  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998754

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.50  E-value=0.0015  Score=51.36  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999998853

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.49  E-value=0.0018  Score=54.12  Aligned_cols=28  Identities=32%  Similarity=0.395  Sum_probs=25.0

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|.++.|.|++||||||+++.|...+.
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            3689999999999999999999998773

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.49  E-value=0.0017  Score=51.81  Aligned_cols=22  Identities=45%  Similarity=0.434  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|.+|+|||||++.+.|.
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~   29 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGV   29 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999985

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.49  E-value=0.00077  Score=54.61  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=22.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.|.||.|+|||||++.++..+.
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            789999999999999999998773

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.49  E-value=0.0017  Score=50.70  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998753

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.48  E-value=0.0017  Score=51.69  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.48  E-value=0.0013  Score=56.80  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+|.+|+|||||++.|.|..
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            69999999999999999999853

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.48  E-value=0.0017  Score=52.82  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|.|+.||||||+.+.|+-.+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998755

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.48  E-value=0.0017  Score=51.20  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998854

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.48  E-value=0.0017  Score=51.15  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            68999999999999999998854

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.47  E-value=0.0012  Score=55.55  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|||||||++.|+|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999864

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.47  E-value=0.0017  Score=59.46  Aligned_cols=31  Identities=29%  Similarity=0.440  Sum_probs=27.7

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +.+-+|+.++|+|++|+|||||++.|+....
T Consensus       146 ~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          146 APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            5667899999999999999999999988763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.46  E-value=0.0017  Score=51.55  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.46  E-value=0.0019  Score=54.62  Aligned_cols=28  Identities=36%  Similarity=0.552  Sum_probs=24.8

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +..+.-+.|.||.|+|||||++.|+..+
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~   75 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATET   75 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4566779999999999999999999887

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.45  E-value=0.0024  Score=49.72  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=24.0

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+..+.|.||.|+|||||++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999998873

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.45  E-value=0.002  Score=53.05  Aligned_cols=31  Identities=23%  Similarity=0.493  Sum_probs=26.2

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +-.+.+..++.|+||.||||+|..+.|+-.+
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456678899999999999999999998765

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=96.45  E-value=0.0015  Score=56.89  Aligned_cols=29  Identities=17%  Similarity=0.428  Sum_probs=26.5

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            57899999999999999999999998764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.45  E-value=0.0023  Score=52.74  Aligned_cols=26  Identities=38%  Similarity=0.566  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.++.|+|+.||||||+.+.|+..+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999998765

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.44  E-value=0.0019  Score=50.33  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998643

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.43  E-value=0.0021  Score=52.77  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|.++.|-|+.||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999998874

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.43  E-value=0.0018  Score=51.27  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCcHHHHHHHHHcCC
Confidence            468999999999999999998843

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.42  E-value=0.0018  Score=52.52  Aligned_cols=25  Identities=32%  Similarity=0.547  Sum_probs=22.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      --+++|+|+.|+|||||++.|++..
T Consensus        30 ~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           30 TVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3478999999999999999999875

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.41  E-value=0.0018  Score=51.20  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            68999999999999999999865

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.40  E-value=0.0021  Score=50.85  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.40  E-value=0.0018  Score=51.68  Aligned_cols=26  Identities=27%  Similarity=0.221  Sum_probs=22.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-.++|+|+.|+|||||++.+.+..
T Consensus        23 ~~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           23 RYRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCC
Confidence            34568999999999999999999854

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.40  E-value=0.0018  Score=52.07  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=25.2

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++.|.-..--.++|+|+.|+|||||++.+.+-.
T Consensus        16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence            5555554445579999999999999999998843

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.40  E-value=0.0021  Score=50.63  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998743

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.39  E-value=0.0016  Score=56.37  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+|+|+|..|+|||||++.|.|..
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            478999999999999999999853

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.39  E-value=0.0019  Score=50.34  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5899999999999999999853

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.39  E-value=0.0019  Score=52.08  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            68999999999999999988754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.37  E-value=0.0019  Score=55.15  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=20.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++.|+|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999999874

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.37  E-value=0.0027  Score=52.50  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=25.5

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|.++.|.|+.||||||+.+.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999998773

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.37  E-value=0.0016  Score=54.52  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.|+|+|+.|+|||||++.|.|..
T Consensus        23 ~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           23 LRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998753

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.36  E-value=0.0022  Score=50.74  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999998854

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.36  E-value=0.0018  Score=54.62  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999854

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.36  E-value=0.0022  Score=53.20  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.+++|.|+.||||||+++.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999999876

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.36  E-value=0.0023  Score=50.56  Aligned_cols=25  Identities=20%  Similarity=0.228  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+-.
T Consensus        22 ~~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           22 EMELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHcCC
Confidence            3468999999999999999998754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.35  E-value=0.0019  Score=55.93  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+..+.|.||+|+|||||++.|+..+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            346788999999999999999999873

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.34  E-value=0.0026  Score=49.41  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=21.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      --.++|+|+.|+|||||++.+.+-
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~~   31 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTSN   31 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999874

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.34  E-value=0.0024  Score=50.73  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999998753

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.33  E-value=0.0024  Score=50.27  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            468999999999999999998754

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.33  E-value=0.0024  Score=50.92  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-.++|+|+.|+|||||++.+.+..
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            34578999999999999999998753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.33  E-value=0.0015  Score=51.00  Aligned_cols=25  Identities=28%  Similarity=0.313  Sum_probs=21.4

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHH
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      ++.-.++|+|++|+|||||++.+.+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3456799999999999999998874

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.33  E-value=0.0011  Score=53.10  Aligned_cols=23  Identities=43%  Similarity=0.434  Sum_probs=20.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.++|+|++|+|||||++.+.|.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~   46 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGL   46 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhc
Confidence            36899999999999999998764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.32  E-value=0.0027  Score=52.20  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=25.8

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|.++.|.|+.||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999999999999884

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.31  E-value=0.0018  Score=50.33  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            368999999999999999998753

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.30  E-value=0.001  Score=55.79  Aligned_cols=33  Identities=36%  Similarity=0.586  Sum_probs=26.2

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .++.+....|  +.|.||+|+|||||++.|+....
T Consensus        37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence            4444555556  77999999999999999999763

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.30  E-value=0.0017  Score=50.92  Aligned_cols=25  Identities=20%  Similarity=0.186  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            4557899999999999999998764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.30  E-value=0.0023  Score=51.21  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998854

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.29  E-value=0.0023  Score=57.75  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=24.9

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-.++.++.|+|++||||||+.+.|+..+
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            334567899999999999999999987654

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.29  E-value=0.0026  Score=50.99  Aligned_cols=26  Identities=31%  Similarity=0.318  Sum_probs=21.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..-.++|+|+.|+|||||++.+.+..
T Consensus        19 ~~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           19 SIMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCC
Confidence            34578999999999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.28  E-value=0.0021  Score=51.19  Aligned_cols=23  Identities=13%  Similarity=0.197  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.28  E-value=0.0023  Score=51.63  Aligned_cols=24  Identities=17%  Similarity=0.246  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCC
Confidence            368999999999999999999853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.28  E-value=0.0027  Score=50.16  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCC
Confidence            368999999999999999888753

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.28  E-value=0.0019  Score=54.91  Aligned_cols=23  Identities=35%  Similarity=0.612  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|||||||++.|+|..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.24  E-value=0.0021  Score=50.59  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            4457899999999999999999853

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.23  E-value=0.0029  Score=50.94  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998754

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.22  E-value=0.0057  Score=54.97  Aligned_cols=24  Identities=29%  Similarity=0.657  Sum_probs=22.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++|+||+|||||||.+.|+-.+
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~   26 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKF   26 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECcchhhHHHHHHHHHHHC
Confidence            478999999999999999999877

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.19  E-value=0.0021  Score=51.46  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            6899999999999999998864

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.19  E-value=0.0016  Score=55.18  Aligned_cols=22  Identities=32%  Similarity=0.434  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.|.+.
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~   31 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLT   31 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4899999999999999998764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.19  E-value=0.0022  Score=58.29  Aligned_cols=31  Identities=39%  Similarity=0.564  Sum_probs=25.8

Q ss_pred             cccCCC--cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          102 SNVNVK--HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~G--eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |.+.++  .+++|+|++|+||||++..|++.+.
T Consensus        92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            444434  5999999999999999999999873

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.19  E-value=0.0027  Score=57.76  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +..+.|.||+|+|||||++.|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999873

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.18  E-value=0.002  Score=50.54  Aligned_cols=24  Identities=29%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        21 ~~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           21 EHKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhcC
Confidence            346899999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.17  E-value=0.0031  Score=49.10  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+..+.|.||.|+|||||++.++..+.
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            356778999999999999999998873

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=96.17  E-value=0.0029  Score=50.54  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999998854

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.15  E-value=0.001  Score=53.86  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.++|+|+.|+|||||++.|.|..
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            3478999999999999999998853

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.15  E-value=0.0043  Score=51.55  Aligned_cols=27  Identities=41%  Similarity=0.568  Sum_probs=23.3

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ....-+.|.||.|+|||||++.++..+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            344557899999999999999999977

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.15  E-value=0.0032  Score=51.20  Aligned_cols=32  Identities=31%  Similarity=0.405  Sum_probs=24.9

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      ...-+.+ .|..+.|+||+|+|||||...|+..
T Consensus        26 Ha~~v~~-~g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           26 HGVLVDI-YGLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             ESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             eEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            4444444 5788999999999999998877653

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=96.15  E-value=0.0022  Score=52.42  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=21.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            3578999999999999999998753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=96.14  E-value=0.0024  Score=54.90  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|..|+|||||++.|+|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999863

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=96.12  E-value=0.002  Score=51.18  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999987643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=96.12  E-value=0.0027  Score=51.22  Aligned_cols=22  Identities=23%  Similarity=0.268  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+.
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~   48 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDN   48 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            5899999999999999998864

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=96.12  E-value=0.0015  Score=51.56  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=21.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.12  E-value=0.0033  Score=49.68  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.12  E-value=0.0031  Score=51.22  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=22.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      --+++|+|..|+|||||++.++...
T Consensus        38 ~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           38 VVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999998775

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=96.12  E-value=0.0021  Score=50.87  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=21.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999987643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.09  E-value=0.0043  Score=50.48  Aligned_cols=26  Identities=35%  Similarity=0.667  Sum_probs=23.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |.+|+|=|+.||||||+++.|...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999998873

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.09  E-value=0.0035  Score=54.54  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=28.1

Q ss_pred             cccccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        96 ~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .+++..+.+ .|.-+.|+|++|+|||||...|.+
T Consensus       134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            446777777 688899999999999999998877

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.09  E-value=0.0018  Score=54.48  Aligned_cols=27  Identities=22%  Similarity=0.238  Sum_probs=23.9

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++.+|+|.|+.||||||+.+.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            478899999999999999999988765

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=96.09  E-value=0.002  Score=50.29  Aligned_cols=23  Identities=22%  Similarity=0.283  Sum_probs=9.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        10 ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEECCCCC-------------
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            68999999999999999988653

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.08  E-value=0.003  Score=54.78  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999999999988864

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=96.07  E-value=0.0029  Score=50.32  Aligned_cols=25  Identities=20%  Similarity=0.198  Sum_probs=20.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus        19 ~~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           19 RGVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhC
Confidence            3456899999999999999998864

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=96.06  E-value=0.0027  Score=50.54  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|..|+|||||++.+.+..
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999888754

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=96.05  E-value=0.0027  Score=51.37  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            36899999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=96.02  E-value=0.0038  Score=49.95  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            68999999999999999998743

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=96.00  E-value=0.0033  Score=51.32  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.++|+|.+|+|||||++.+.|.
T Consensus        38 ~kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           38 YRVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            36899999999999999998863

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.98  E-value=0.0033  Score=52.90  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|..|+|||||++.|.|..
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999854

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.96  E-value=0.0042  Score=49.85  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.9

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .-.++|+|+.|+|||||++.+.+.
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999988864

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.96  E-value=0.0033  Score=53.20  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=22.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..++|+|.+|+|||||++.|.|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            589999999999999999999865

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.96  E-value=0.02  Score=47.42  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=20.4

Q ss_pred             CCcE-EEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHI-VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~Gei-vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.. +.+.|+.|+||||++-.++..+
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            5654 7789999999999966666555

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.0048  Score=50.17  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            68999999999999999998753

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.94  E-value=0.0047  Score=50.01  Aligned_cols=24  Identities=17%  Similarity=0.296  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            346899999999999999999875

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.93  E-value=0.0046  Score=50.43  Aligned_cols=23  Identities=43%  Similarity=0.732  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.|+||.||||+|..+.|+-.+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67899999999999999998765

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.93  E-value=0.0032  Score=53.55  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|..|+|||||++.|.|..
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            379999999999999999999864

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.91  E-value=0.0035  Score=52.88  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++++|+.|+|||||++.|.|..
T Consensus        41 ~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           41 TILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998754

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.86  E-value=0.0051  Score=50.52  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHH
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~  128 (255)
                      -+++|+++.|.|+.|+|||||+--++
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            37799999999999999999986554

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.83  E-value=0.0056  Score=54.17  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.6

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+++.|.|++|+|||||...++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999998888765

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.83  E-value=0.002  Score=51.31  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=4.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.++|+|+.|+|||||++.+.+.
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998876

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.81  E-value=0.0053  Score=49.26  Aligned_cols=24  Identities=13%  Similarity=0.025  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998743

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.80  E-value=0.0069  Score=53.36  Aligned_cols=27  Identities=37%  Similarity=0.576  Sum_probs=24.1

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.-+++|+|+.|+|||||++.|++.+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            355689999999999999999999887

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.74  E-value=0.0018  Score=52.29  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999988753

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.72  E-value=0.0063  Score=48.53  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             CCcEEEEECCCCCcHHHHH-HHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLA-AEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLL-k~L~Gll  131 (255)
                      +|.++.|.||.|+||||++ +++....
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4889999999999999997 5554443

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.69  E-value=0.0064  Score=48.25  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            455799999999999999998864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.66  E-value=0.0033  Score=57.33  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+++|+|.+|+|||||++.|+|..
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            379999999999999999998853

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.64  E-value=0.006  Score=53.37  Aligned_cols=28  Identities=32%  Similarity=0.426  Sum_probs=24.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+..+.|.||.|+|||||++.++..+.
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~   69 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLE   69 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999998773

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.63  E-value=0.0076  Score=48.00  Aligned_cols=23  Identities=35%  Similarity=0.704  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            38899999999999999998876

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.62  E-value=0.0033  Score=57.39  Aligned_cols=31  Identities=42%  Similarity=0.652  Sum_probs=24.9

Q ss_pred             cccCCCc--EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          102 SNVNVKH--IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       102 l~i~~Ge--ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      -.+..|.  .+.|.||.|+|||||++.|+....
T Consensus        43 ~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           43 RAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3344454  488999999999999999999873

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.58  E-value=0.0088  Score=51.00  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+..+.|.||.|+|||||++.++..+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            455789999999999999999998873

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.53  E-value=0.0095  Score=50.99  Aligned_cols=27  Identities=37%  Similarity=0.537  Sum_probs=23.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +..-.+.|.||.|+|||+|.+.|+..+
T Consensus        34 ~~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           34 KVPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            344567888999999999999999987

>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}

Probab=95.53  E-value=0.0094  Score=53.37  Aligned_cols=33  Identities=27%  Similarity=0.398  Sum_probs=29.1

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.=+.|-+|+..+|+|+.|+|||||+..|+...
T Consensus       167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i  199 (427)
T 3l0o_A          167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI  199 (427)
T ss_dssp             HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred             hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence            444678899999999999999999999888865

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.53  E-value=0.0082  Score=45.65  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=23.3

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..+.-+.|.||.|+|||++.+.|....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            455668899999999999999998865

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.52  E-value=0.0048  Score=48.48  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=20.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            445799999999999999998854

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=95.52  E-value=0.021  Score=56.22  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=22.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+.|.||+|+|||++.+.|+..+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4788999999999999999999883

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.51  E-value=0.0098  Score=49.36  Aligned_cols=24  Identities=38%  Similarity=0.483  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.+||+|+.||||||+.+.|+-.+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999998765

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.50  E-value=0.0071  Score=54.97  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus       191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            5555458899999999999999999999888866

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.48  E-value=0.0084  Score=47.66  Aligned_cols=24  Identities=29%  Similarity=0.325  Sum_probs=20.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .|.-+.|.|++|+|||||...+..
T Consensus        15 ~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           15 DKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHH
Confidence            578899999999999999876654

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.44  E-value=0.006  Score=49.38  Aligned_cols=24  Identities=25%  Similarity=0.418  Sum_probs=20.5

Q ss_pred             cEEEEECCCCCcHHHHHHH-HHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAE-VVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~-L~Gll  131 (255)
                      -.++|+|+.|+|||||++. +.|..
T Consensus        16 ~ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           16 FKLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             EEEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCC
Confidence            3589999999999999998 66654

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.41  E-value=0.011  Score=51.25  Aligned_cols=27  Identities=41%  Similarity=0.491  Sum_probs=23.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+..-+.|.||.|+|||||++.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            345678899999999999999999876

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=95.31  E-value=0.0092  Score=50.99  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+-.++|+|.+|+|||||++.|.|..
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            34579999999999999999999854

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=95.26  E-value=0.0089  Score=51.53  Aligned_cols=24  Identities=25%  Similarity=0.397  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +-.++|+|+.|+|||||++.+.+-
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~   26 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN   26 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            457899999999999999998765

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.24  E-value=0.012  Score=49.91  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=22.8

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +.-+.|.||.|+|||||++.++..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45678999999999999999999873

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.24  E-value=0.013  Score=55.09  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++|.++.|.|.+||||||+.+.|.-.+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence            357899999999999999999999876

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=95.22  E-value=0.008  Score=53.96  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..++|||||++.|+|..
T Consensus         2 kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            2 EIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            47999999999999999998854

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=95.20  E-value=0.0072  Score=55.37  Aligned_cols=27  Identities=26%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.|-.++|+|+.|+|||||++.|+|..
T Consensus       222 r~~~kV~ivG~~nvGKSSLln~L~~~~  248 (462)
T 3geh_A          222 RTGLKVAIVGRPNVGKSSLLNAWSQSD  248 (462)
T ss_dssp             HHCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            346679999999999999999999974

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.20  E-value=0.012  Score=51.79  Aligned_cols=26  Identities=38%  Similarity=0.569  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.-+.|.||+|+||||+.+.|+..+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            34568899999999999999999876

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.18  E-value=0.012  Score=54.59  Aligned_cols=29  Identities=7%  Similarity=0.061  Sum_probs=26.3

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.|.++.|+|.+||||||+-+.|+..+.
T Consensus       392 ~~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          392 PKQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             cccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            45788999999999999999999999983

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.18  E-value=0.0034  Score=50.14  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.5

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            346899999999999999888753

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.14  E-value=0.014  Score=55.42  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.+|.|+|.+||||||+.+.|+-.+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999877

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.13  E-value=0.014  Score=51.06  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+..+.|.||.|+|||||++.++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999876

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.13  E-value=0.016  Score=53.67  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=23.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+..+++|+|++|+||||++..|+..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999997763

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.12  E-value=0.014  Score=47.77  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=25.5

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++.-.+.|.||.|+||||+...|+..+.
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            66666789999999999999999999883

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.12  E-value=0.016  Score=51.03  Aligned_cols=27  Identities=26%  Similarity=0.447  Sum_probs=23.8

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ....-+.|.||.|+|||||++.|+...
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence            456678999999999999999999876

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.07  E-value=0.014  Score=51.02  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=24.8

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|..+.|.||.|+|||||++.++..+.
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999999883

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.05  E-value=0.016  Score=48.72  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=23.5

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ....-+.|.||.|+|||||++.|+...
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            345678899999999999999999876

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.05  E-value=0.011  Score=51.54  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=24.5

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -+.+|.++.|.||.|+|||||...++..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4677888899999999999999988764

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.01  E-value=0.017  Score=49.81  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-+.|.||.|+|||+|++.|+..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999876

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.97  E-value=0.0077  Score=54.57  Aligned_cols=23  Identities=30%  Similarity=0.566  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|+|||||++.|+|..
T Consensus         5 ~V~ivG~~nvGKStL~n~l~~~~   27 (436)
T 2hjg_A            5 VVAIVGRPNVGKSTIFNRIAGER   27 (436)
T ss_dssp             EEEEECSTTSSHHHHHHHHEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999998753

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=94.97  E-value=0.019  Score=49.67  Aligned_cols=26  Identities=42%  Similarity=0.540  Sum_probs=23.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +..-+.|.||.|+|||||++.|+...
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence            44568899999999999999999876

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=94.95  E-value=0.019  Score=46.32  Aligned_cols=24  Identities=25%  Similarity=0.423  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|+|=|+-||||||.++.|...+.
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~   25 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLE   25 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            578889999999999999998874

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.94  E-value=0.014  Score=51.79  Aligned_cols=25  Identities=24%  Similarity=0.268  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      ++..++++|..|+|||||+|.|.|.
T Consensus       161 ~~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          161 EGGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCcEEEEcCCCCchHHHHHHHHhh
Confidence            4567999999999999999999997

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=94.82  E-value=0.017  Score=49.96  Aligned_cols=23  Identities=35%  Similarity=0.579  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|.||.|+|||||++.|+...
T Consensus        57 ~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCHHHHHHHHHHHh
Confidence            57899999999999999998876

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=94.81  E-value=0.015  Score=51.64  Aligned_cols=29  Identities=31%  Similarity=0.508  Sum_probs=25.2

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+++|+++.|.|+.|+|||||+..++...
T Consensus        70 Gl~~G~li~I~G~pGsGKTtlal~la~~~   98 (366)
T 1xp8_A           70 GIPRGRITEIYGPESGGKTTLALAIVAQA   98 (366)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence            36799999999999999999997777654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=94.79  E-value=0.021  Score=52.23  Aligned_cols=26  Identities=19%  Similarity=0.488  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ...++.++|.+||||||+.+.|+..+
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            45689999999999999999998765

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.74  E-value=0.023  Score=51.45  Aligned_cols=29  Identities=34%  Similarity=0.541  Sum_probs=24.2

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +.+..=+.|.||.|+|||+|.+.|++...
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            44444588999999999999999999873

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=94.74  E-value=0.012  Score=54.95  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=22.8

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .--+|+|+|..|+|||||++.|.|..
T Consensus        64 ~~~~V~vvG~~n~GKSTLIN~Llg~~   89 (550)
T 2qpt_A           64 GKPMVLVAGQYSTGKTSFIQYLLEQE   89 (550)
T ss_dssp             SCCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCc
Confidence            34589999999999999999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	8e-18
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	3e-14
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	2e-13
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	7e-11
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	7e-09
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	2e-05
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	4e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	1e-04
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-04
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	4e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	4e-04
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	5e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	6e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.001
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.002
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.002
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	0.003
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.004
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.004
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.004
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.004

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 79.0 bits (194), Expect = 8e-18
 Identities = 30/154 (19%), Positives = 61/154 (39%), Gaps = 23/154 (14%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+ +AG    GKST A  +   +++             +   V  ++  DGF      L 
Sbjct: 82  IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQH 227
                +    ++G P +++   L+  + +L++   +V AP + H + D + D     +Q 
Sbjct: 130 E----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 185

Query: 228 KVVIVDGNYLFLDGGVWKD------VSSMFDEKW 255
            ++I++G  +   G  +        VS   D   
Sbjct: 186 DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSI 219

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 68.4 bits (167), Expect = 3e-14
 Identities = 24/165 (14%), Positives = 52/165 (31%), Gaps = 30/165 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST+        ++I+ ++             A  +  D FH + 
Sbjct: 2   KKHPIISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFN 47

Query: 165 -SQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
            + + A  D + A         +        L    +     G     ++ H   +    
Sbjct: 48  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 107

Query: 220 DILVGLQ---------HKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            +  G             ++  +G +  +      +++ + D K 
Sbjct: 108 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLKI 151

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (161), Expect = 2e-13
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 26/166 (15%)

Query: 82  CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
            +D   + L + +       +       +  +GP G+GKS  + ++   + + +  + S 
Sbjct: 4   VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS- 60

Query: 142 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNL 198
                          +D F+L       + +  + +     RG P T +  LL   L  +
Sbjct: 61  ----------IGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 110

Query: 199 RNQGS----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
            N              Y  S   G GD       + L   + I++G
Sbjct: 111 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 156

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.0 bits (139), Expect = 7e-11
 Identities = 30/147 (20%), Positives = 58/147 (39%), Gaps = 15/147 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +                    +L  D F+  L+   
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             +  K        P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 55  KAKALKGQFN-FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 112

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEKW 255
           VV+ +G   F      ++V  +F  K 
Sbjct: 113 VVLFEGILAFYS----QEVRDLFQMKL 135

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.1 bits (123), Expect = 7e-09
 Identities = 22/173 (12%), Positives = 56/173 (32%), Gaps = 22/173 (12%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV---- 53

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
                      V  MD   +  ++     + +               L     + L+   
Sbjct: 54  ----------CVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVE--WLTHQLFRQLKASH 101

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEKW 255
            +  P +DH   D      +      +++++G +L            ++ +  
Sbjct: 102 QLTLPFYDH-ETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFFDFVVYLDCP 153

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   + 
Sbjct: 21  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76

Query: 133 KIWPQKASS 141
               + A  
Sbjct: 77  AAGHKVAVL 85

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        + 
Sbjct: 24  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79

Query: 133 KIW 135
           +  
Sbjct: 80  REG 82

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 39.6 bits (91), Expect = 1e-04
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           HI  L G  G+GKS +A+EV  +++  +
Sbjct: 7   HIYVLMGVSGSGKSAVASEVAHQLHAAF 34

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
           K +  + GP G GKST    +  +++
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLD 27

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 37.8 bits (86), Expect = 4e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           K I+   G PG+GKST A E + +    +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFY 30

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 38.1 bits (87), Expect = 4e-04
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
             ++ L G   AGKS +   +   +    P+   +F        +   +      +    
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNC 194
              +    E  A  GA       +    
Sbjct: 59  DGGVSIGPEFRALEGAWAEGVVAMARAG 86

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 38.2 bits (87), Expect = 5e-04
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 82  CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140
                 +ALA+  L    + A   +V  I G  G  G GK+TLA   V+R+++    K  
Sbjct: 20  VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEG 78

Query: 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
               Q                L + Q       + A A  
Sbjct: 79  LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALD 118

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           ++  A   G GK+TL  +++  +  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCA 28

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +V + G PG G +T +   +  + K
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRK 27

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
            ++ + G P  GK+ ++ ++ R +N I
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFI 29

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           I  + G PG GKST+ A+V   ++ 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDN 27

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ L+G PG+GKST+A  +     
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPG 29

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +  + G   +GK+TL  + V    +
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVR 27

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
            + L G   +GK  +A  +   +N+
Sbjct: 8   TIFLTGYMNSGKDAIARALQVTLNQ 32

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           +V + G PG+GK T  A +VR   
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFG 31

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           +H+  L GPPG GK+TL  +    +  
Sbjct: 2   RHV-FLTGPPGVGKTTLIHKASEVLKS 27

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           ++ + GP GAGK TL   +   + 
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQ 28

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 89  ALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
              ++      L      K  +V L G  GAGK+TL   +++ I      K+ ++
Sbjct: 16  RFGKKF--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	99.98
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.96
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.52
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.31
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.0
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	98.82
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.5
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.19
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	98.1
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.99
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.98
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.93
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.84
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.8
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.74
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.72
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.71
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.66
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.59
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.57
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.56
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.55
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.52
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.5
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.47
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.46
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.43
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.42
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.41
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.4
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.36
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.36
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.29
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.26
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.26
d1okkd2	207	GTPase domain of the signal recognition particle r	97.25
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.24
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.23
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.19
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.17
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.15
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.15
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.14
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.12
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.12
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.12
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.11
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.11
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.1
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	97.07
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.06
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.05
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	97.02
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.01
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.01
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.0
d1nrjb_	209	Signal recognition particle receptor beta-subunit	97.0
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.0
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.0
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.0
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.99
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.98
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.98
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.98
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.98
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.97
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.97
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.96
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	96.94
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.93
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.93
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.93
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.91
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.91
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.88
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.88
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.85
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.81
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.79
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.75
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.74
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.73
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.73
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	96.71
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.7
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.7
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.69
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.69
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.67
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.67
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.65
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.62
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.61
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.61
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.57
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.57
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.56
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.55
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.55
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.54
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.53
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.48
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.47
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.46
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.45
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.45
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.45
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.43
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.42
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.37
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.36
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.35
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.34
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.34
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.34
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.32
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.31
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.27
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.27
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.26
d1xpua3	289	Transcription termination factor Rho, ATPase domai	96.25
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.25
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.22
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.21
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.19
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.18
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.18
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.16
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.16
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.16
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.13
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.13
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.12
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.08
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.08
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.08
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.07
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.07
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	96.02
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.0
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.99
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.98
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.98
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.96
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.95
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.88
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	95.88
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.87
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.85
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.81
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.81
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.8
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.79
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.76
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.72
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.72
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.71
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.69
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.64
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.59
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.58
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.56
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.56
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.53
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.53
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.5
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.44
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.44
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.42
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.41
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	95.4
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.32
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.13
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.05
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.02
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	94.96
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	94.92
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.87
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.86
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.77
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.64
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.53
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	94.52
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.51
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.41
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	94.39
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.35
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.25
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.24
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	94.03
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.97
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.79
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	93.73
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.55
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	93.54
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	93.19
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.02
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.97
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.91
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.89
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	92.84
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	92.67
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.55
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	92.4
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.31
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	92.2
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.14
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.07
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.94
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.36
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.34
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.0
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	90.97
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.47
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	90.08
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	89.88
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	89.66
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	89.22
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.13
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	89.0
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	88.98
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	88.79
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	88.79
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	88.4
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	88.4
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	88.37
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	88.25
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	87.52
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	87.48
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	86.96
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.55
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	86.43
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	86.4
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	85.65
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	85.09
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	84.69
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	82.35
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.24
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	82.07
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	81.31

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.1e-41  Score=285.84  Aligned_cols=171  Identities=12%  Similarity=0.137  Sum_probs=136.7

Q ss_pred             CCCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-----
Q 025293           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (255)
Q Consensus        74 ~~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (255)
                      .|..|+++||+|+|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...     
T Consensus         3 ~M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~   75 (239)
T d1v43a3           3 KMVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPP   75 (239)
T ss_dssp             CCCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCG
T ss_pred             ccCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCc
Confidence            366799999999999843    6699999999999999999999999999999999998   99999 4554321     


Q ss_pred             -CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                       ...+|+ ++++.. ++ ..+++.+++.+.....+.+.......+.++++.+++.  .++++..|||||||||+||++|+
T Consensus        76 ~~r~ig~-v~Q~~~-l~-~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~  152 (239)
T d1v43a3          76 KDRNISM-VFQSYA-VW-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIV  152 (239)
T ss_dssp             GGGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHT
T ss_pred             ccceEEE-Eeechh-hc-ccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhc
Confidence             234777 555432 22 2367877776655555554444455677889988886  57889999999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|+|||+||||++||+..+.++++++.+.
T Consensus       153 ~~P~iLllDEPts~LD~~~~~~i~~ll~~l  182 (239)
T d1v43a3         153 VEPDVLLMDEPLSNLDAKLRVAMRAEIKKL  182 (239)
T ss_dssp             TCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCceeecCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999998764

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.7e-41  Score=281.67  Aligned_cols=167  Identities=14%  Similarity=0.112  Sum_probs=107.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------CCC
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (255)
                      |+++||+|+|++.  .  +|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...      ...
T Consensus         1 Iev~nv~k~yg~~--~--~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~   73 (232)
T d2awna2           1 VQLQNVTKAWGEV--V--VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG   73 (232)
T ss_dssp             EEEEEEEEEETTE--E--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred             CEEEEEEEEECCE--E--EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence            6899999999873  3  6699999999999999999999999999999999999   99999 4554322      234


Q ss_pred             eEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCCc
Q 025293          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (255)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~~  228 (255)
                      +|. +.++. .++ ..+++.+++.+.....+.+.......+.++++.+++.  .++++..|||||||||+||++|+.+|+
T Consensus        74 ig~-v~Q~~-~l~-~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~  150 (232)
T d2awna2          74 VGM-VFQSY-ALY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS  150 (232)
T ss_dssp             EEE-ECSSC-CC----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCS
T ss_pred             eee-ecccc-ccc-cchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            676 55543 222 2378889988877777776665566788899988876  467889999999999999999999999


Q ss_pred             EEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          229 VVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       229 illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+||||++||+..+.+++++|.+.
T Consensus       151 illlDEPts~LD~~~~~~i~~~l~~l  176 (232)
T d2awna2         151 VFLLDEPLSNLDAALRVQMRIEISRL  176 (232)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999999999999988653

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=2e-41  Score=284.67  Aligned_cols=170  Identities=14%  Similarity=0.126  Sum_probs=142.2

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |+.|+++||+|+||+.  .  +++||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++...      
T Consensus         1 M~~i~v~nl~k~yg~~--~--al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           1 MAGVRLVDVWKVFGEV--T--AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             CEEEEEEEEEEEETTE--E--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCcEEEEeEEEEECCE--E--EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence            5689999999999873  3  6699999999999999999999999999999999998   99999 4554211      


Q ss_pred             ------CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhh
Q 025293          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (255)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~l  219 (255)
                            ...+|. +.++. .++ +.+++.+++.+.....+.+.......+.++++.+++.  .+.++..|||||||||+|
T Consensus        74 ~~~~~~~r~ig~-v~Q~~-~L~-~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~I  150 (240)
T d1g2912          74 IFVPPKDRDIAM-VFQSY-ALY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (240)
T ss_dssp             EECCGGGSSEEE-ECSCC-CCC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             hhccccccccee-cccch-hhc-chhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence                  235676 55443 222 2378899998888887766555556678889988876  467889999999999999


Q ss_pred             hhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       220 a~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+||+.+|++||+||||++||+..+..++++|.+.
T Consensus       151 AraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l  185 (240)
T d1g2912         151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKL  185 (240)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999753

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.8e-41  Score=281.03  Aligned_cols=172  Identities=17%  Similarity=0.171  Sum_probs=143.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC-CC------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-KP------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~-~~------  148 (255)
                      ||+++||+|+|+.....+.||+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++.. ..      
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence            68999999999875444557899999999999999999999999999999999999   99999 455432 11      


Q ss_pred             ----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhh
Q 025293          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~  222 (255)
                          ..+|. ++++. .+. ..+++.+++.+.....+.+.......+.++++.+++.  .+.++..|||||+|||+||+|
T Consensus        78 ~~~rr~ig~-VfQ~~-~l~-~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAra  154 (240)
T d3dhwc1          78 TKARRQIGM-IFQHF-NLL-SSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA  154 (240)
T ss_dssp             HHHHHHEEE-CCSSC-CCC-TTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHH
T ss_pred             hhhhccccc-ccccc-ccC-CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhh
Confidence                13666 55543 332 2368888888887777776666667788999998886  567889999999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |+.+|++||+||||++||+..+..++++|.+.
T Consensus       155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l  186 (240)
T d3dhwc1         155 LASNPKVLLCDEATSALDPATTRSILELLKDI  186 (240)
T ss_dssp             HHTCCSEEEEESGGGSSCHHHHHHHHHHHHHH
T ss_pred             hccCCCeEEeccccccCCHHHhhHHHHHHHHH
Confidence            99999999999999999999999999999764

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=3.3e-41  Score=283.21  Aligned_cols=172  Identities=15%  Similarity=0.166  Sum_probs=141.1

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC------
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~------  147 (255)
                      |..|+++||+|+|+++  .+.+|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...      
T Consensus         1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence            5679999999999753  2346799999999999999999999999999999999998   99999 5554311      


Q ss_pred             -----CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhh
Q 025293          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (255)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la  220 (255)
                           +..+|. ++++.. ++ +.+++.+++.+.....+++.......+.++++.+++.  .+.++..|||||||||+||
T Consensus        76 ~~~~~rr~ig~-vfQ~~~-L~-p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA  152 (242)
T d1oxxk2          76 IVPPEDRKIGM-VFQTWA-LY-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (242)
T ss_dssp             SSCGGGSCEEE-EETTSC-CC-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             hcchhhccceE-Eecccc-cc-ccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence                 234776 555542 22 2378888888776666655444455678899998886  5788899999999999999


Q ss_pred             hhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       221 ~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+.+|++||+||||++||+..+.+++++|.+.
T Consensus       153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l  186 (242)
T d1oxxk2         153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEV  186 (242)
T ss_dssp             HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHH
T ss_pred             hHHhhcccceeecCCccCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998764

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=2.4e-40  Score=276.57  Aligned_cols=172  Identities=15%  Similarity=0.146  Sum_probs=136.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~------  148 (255)
                      ||+++||+|+|+...+.+.+|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++... .      
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence            68999999999865455667899999999999999999999999999999999998   99999 5555322 1      


Q ss_pred             -----CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCC---CccHHHHHHHHHhhccc---CCccCCCCCcccccch
Q 025293          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (255)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~l~~~---~~~~~~~lS~G~kqrv  217 (255)
                           ..+|. +.++.. +. +.+++.++..+.........   ......+.++++.+++.   .+.++.+|||||||||
T Consensus        78 ~~~r~~~ig~-v~Q~~~-l~-~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRv  154 (230)
T d1l2ta_          78 TKIRRDKIGF-VFQQFN-LI-PLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV  154 (230)
T ss_dssp             HHHHHHHEEE-ECTTCC-CC-TTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred             chhhcceEEE-Eecchh-hC-cCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHH
Confidence                 13676 555532 22 23688888777665443322   12233456778877774   3567889999999999


Q ss_pred             hhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       218 ~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||+||+.+|++||+||||++||+.++..+++++.+.
T Consensus       155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l  191 (230)
T d1l2ta_         155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKKL  191 (230)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999764

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=1e-39  Score=272.13  Aligned_cols=164  Identities=15%  Similarity=0.192  Sum_probs=136.5

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-----C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-----P  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-----~  149 (255)
                      ||+++||+|+|++  .   +|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++... .     .
T Consensus         1 mi~v~nlsk~y~~--~---aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r   72 (229)
T d3d31a2           1 MIEIESLSRKWKN--F---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (229)
T ss_dssp             CEEEEEEEEECSS--C---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEeCC--E---EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence            6899999999976  2   6799999999999999999999999999999999998   99999 5555322 1     2


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      .+|. +.++.. ++ +.+++.+++.+.....+..   ....+.++++.+++.  .++++..|||||||||+|||||+.+|
T Consensus        73 ~ig~-v~Q~~~-l~-~~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P  146 (229)
T d3d31a2          73 DIAF-VYQNYS-LF-PHMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP  146 (229)
T ss_dssp             TCEE-ECTTCC-CC-TTSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred             ccee-eccccc-cC-ccccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccC
Confidence            4676 555443 22 2378889988877766653   245677888888876  56788999999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+||||++||+..+.++++++.+.
T Consensus       147 ~iLllDEPts~LD~~~~~~i~~~l~~l  173 (229)
T d3d31a2         147 KILLLDEPLSALDPRTQENAREMLSVL  173 (229)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred             CceeecCCCcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999998753

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.7e-38  Score=270.26  Aligned_cols=168  Identities=15%  Similarity=0.166  Sum_probs=133.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      .|+++||+|+||+.  .  +|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus         2 ~Lev~nl~k~yg~~--~--al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~   74 (258)
T d1b0ua_           2 KLHVIDLHKRYGGH--E--VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   74 (258)
T ss_dssp             CEEEEEEEEEETTE--E--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             eEEEEEEEEEECCE--E--EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence            58999999999884  3  5699999999999999999999999999999999998   99999 55543211       


Q ss_pred             --------------CCeEEEEecCCCCCCCccCCcccChHHHH-HhcCCCCCccHHHHHHHHHhhccc---CCccCCCCC
Q 025293          149 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD  210 (255)
Q Consensus       149 --------------~~~g~~i~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~~---~~~~~~~lS  210 (255)
                                    ..+|. ++++. .++ ..+++.+++.+.. ...+.+.........++++.+++.   .++++.+||
T Consensus        75 ~~~~~~~~~~~~~r~~ig~-vfQ~~-~l~-~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LS  151 (258)
T d1b0ua_          75 QLKVADKNQLRLLRTRLTM-VFQHF-NLW-SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS  151 (258)
T ss_dssp             SEEESCHHHHHHHHHHEEE-ECSSC-CCC-TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred             hcccccHhHHHHHhcceEE-EEech-hhc-cchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccccc
Confidence                          12565 44443 222 2367777766543 334444333445677888888885   356788999


Q ss_pred             cccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       211 ~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |||+|||+||++|+.+|++||+||||++||+..+.+++++|.+.
T Consensus       152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l  195 (258)
T d1b0ua_         152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQL  195 (258)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhh
Confidence            99999999999999999999999999999999999999999764

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=3.1e-38  Score=265.75  Aligned_cols=168  Identities=14%  Similarity=0.104  Sum_probs=133.2

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCC-CC------C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VK------P  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~-~~------~  148 (255)
                      .|+++||+|+|++.  +  +|+|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++. ..      +
T Consensus         2 aI~v~nl~k~yg~~--~--vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~   74 (238)
T d1vpla_           2 AVVVKDLRKRIGKK--E--ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVR   74 (238)
T ss_dssp             CEEEEEEEEEETTE--E--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHH
T ss_pred             CEEEEeEEEEECCE--E--EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHH
Confidence            37899999999984  4  5599999999999999999999999999999999998   99999 44442 22      2


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccC
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~  226 (255)
                      ...|+ +.+.....  ..+++.++..+....++.........+..+++.+++.  .+.++..||||||||+++|++|+.+
T Consensus        75 ~~i~~-vpq~~~~~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~  151 (238)
T d1vpla_          75 KLISY-LPEEAGAY--RNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN  151 (238)
T ss_dssp             TTEEE-ECTTCCCC--TTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred             hhEeE-eeeccccC--CCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcC
Confidence            34666 44432211  2367777777766666554333334556777777765  4577899999999999999999999


Q ss_pred             CcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       227 ~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      |++|||||||++||+..+.++++++.+.
T Consensus       152 p~illLDEPt~gLD~~~~~~i~~~i~~~  179 (238)
T d1vpla_         152 PRLAILDEPTSGLDVLNAREVRKILKQA  179 (238)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999753

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=1.9e-38  Score=267.49  Aligned_cols=170  Identities=19%  Similarity=0.185  Sum_probs=124.1

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC-C-C---
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-P-P---  149 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~-~-~---  149 (255)
                      .+|+++||+|+|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++... . +   
T Consensus         5 ~~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~   77 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             eEEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHH
Confidence            4899999999999843    6699999999999999999999999999999999998   99999 5555321 1 1   


Q ss_pred             --CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHh---hcccCCccCCCCCcccccchhhhhhhc
Q 025293          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---LRNQGSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---l~~~~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                        ..|..+...+..++ +.+++.++......... ...........+++.   +.-..+.++..|||||||||+||+||+
T Consensus        78 ~~r~gi~~~~q~~~l~-~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~  155 (240)
T d1ji0a_          78 INRMGIALVPEGRRIF-PELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALM  155 (240)
T ss_dssp             HHHTTEEEECSSCCCC-TTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHT
T ss_pred             HHHhcccccCcccccC-CcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHH
Confidence              12221222222222 23566665543322111 111122223334433   333467788999999999999999999


Q ss_pred             cCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .+|++|||||||++||+..+.+++++|.+.
T Consensus       156 ~~P~lLllDEPt~gLD~~~~~~i~~~i~~l  185 (240)
T d1ji0a_         156 SRPKLLMMDEPSLGLAPILVSEVFEVIQKI  185 (240)
T ss_dssp             TCCSEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred             hCCCEeeecCCCcCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.7e-38  Score=268.03  Aligned_cols=170  Identities=15%  Similarity=0.147  Sum_probs=128.3

Q ss_pred             CCeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-C---
Q 025293           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-P---  149 (255)
Q Consensus        75 ~~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-~---  149 (255)
                      |.+|+++||+|+|++..    +|+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .+++.... .   
T Consensus         2 M~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~   74 (254)
T d1g6ha_           2 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   74 (254)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             cceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence            67999999999999843    6699999999999999999999999999999999998   99999 55553221 1   


Q ss_pred             -----CeEEEEecCCCCCCCccCCcccChHHHHH------------hcCCCCC-ccHHHHHHHHHhhccc--CCccCCCC
Q 025293          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHA------------RRGAPWT-FNPLLLLNCLKNLRNQ--GSVYAPSF  209 (255)
Q Consensus       150 -----~~g~~i~~~~~~~~~~~l~~~~~~~~~~~------------~~~~~~~-~~~~~~~~~l~~l~~~--~~~~~~~l  209 (255)
                           .++. ++++...+  ..+++.+++.....            ....... .......++++.+++.  .+.++..|
T Consensus        75 ~~~~~gi~~-v~Q~~~~~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  151 (254)
T d1g6ha_          75 ELYHYGIVR-TFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  151 (254)
T ss_dssp             HHHHHTEEE-CCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             HHHHhcCCc-cCCccccC--CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhC
Confidence                 1343 33332211  23566665543211            1111111 1223456777777765  46778999


Q ss_pred             CcccccchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       210 S~G~kqrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||||||||++|++|+.+|++|||||||++||+..+.++++++.+.
T Consensus       152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l  196 (254)
T d1g6ha_         152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLEL  196 (254)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998753

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=3.7e-37  Score=253.19  Aligned_cols=165  Identities=16%  Similarity=0.193  Sum_probs=126.7

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC---CCCeE
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA  152 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g  152 (255)
                      .|+++||++.|+.   +  +|+|+||+|++|+++||+||||||||||+|+|+|+++   |++|+ .+++...   +...+
T Consensus         2 ~lev~~ls~~y~~---~--vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDK---P--VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESSS---E--EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred             eEEEEEEEEEeCC---e--EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence            5899999999963   3  5599999999999999999999999999999999998   99999 5555322   12233


Q ss_pred             EEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-CCccCCCCCcccccchhhhhhhccCCcEEE
Q 025293          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (255)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~ill  231 (255)
                      + +.....  ....+++.++.......++.  ......+.+.++.+.+. .+.++..||||||||+++|++|+.+|+++|
T Consensus        74 ~-~~~~~~--~~~~~t~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~lll  148 (200)
T d1sgwa_          74 F-LPEEII--VPRKISVEDYLKAVASLYGV--KVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV  148 (200)
T ss_dssp             E-ECSSCC--CCTTSBHHHHHHHHHHHTTC--CCCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             E-Eeeccc--CCCCcCHHHHHHHHHHhcCC--ccCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEE
Confidence            3 332221  11224555555555555543  23345667777777753 456788999999999999999999999999


Q ss_pred             EcCCCCCCChhHHHHHHHHHHhh
Q 025293          232 VDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       232 lDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      +||||++||+.++..+++.+.+.
T Consensus       149 lDEPt~gLD~~~~~~i~~~l~~~  171 (200)
T d1sgwa_         149 LDDPVVAIDEDSKHKVLKSILEI  171 (200)
T ss_dssp             EESTTTTSCTTTHHHHHHHHHHH
T ss_pred             EcCcccccCHHHHHHHHHHHHHH
Confidence            99999999999999999887653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.5e-35  Score=249.91  Aligned_cols=163  Identities=18%  Similarity=0.175  Sum_probs=118.8

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC--------C
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------K  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~--------~  147 (255)
                      ||+++||+|+|++. +.  +|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++..        .
T Consensus         1 mle~knvsf~Y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   74 (242)
T d1mv5a_           1 MLSARHVDFAYDDS-EQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW   74 (242)
T ss_dssp             CEEEEEEEECSSSS-SC--SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred             CEEEEEEEEECCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence            68999999999763 34  4599999999999999999999999999999999998   99999 455421        1


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------C----CccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~----~~~~~~lS~G~k  214 (255)
                      +..+|+ +.++.+.+.   .++.++..     .+.............++...+.         .    ......||||||
T Consensus        75 r~~i~~-v~Q~~~lf~---~ti~eNi~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqk  145 (242)
T d1mv5a_          75 RSQIGF-VSQDSAIMA---GTIRENLT-----YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR  145 (242)
T ss_dssp             TTTCCE-ECCSSCCCC---EEHHHHTT-----SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred             HhheEE-EccccccCC---cchhhhee-----cccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHH
Confidence            234565 565544221   12222211     1222223344444444433322         1    122357999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||+++||||+.+|+|||+||||++||+.+...+++.|.+.
T Consensus       146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l  185 (242)
T d1mv5a_         146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSL  185 (242)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-35  Score=246.83  Aligned_cols=164  Identities=18%  Similarity=0.151  Sum_probs=117.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      .|+++||+++|++.. ...+|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus        11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred             eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchhhhHHH
Confidence            599999999997632 2335699999999999999999999999999999999998   99998 4555321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHH---------HHHHHhhccc----CCccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQ----GSVYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------~~~l~~l~~~----~~~~~~~lS~G~k  214 (255)
                      ...+++ +.++.+.+.   .++.+++.     ++..........         ...++.+...    .......||||||
T Consensus        87 r~~i~~-v~Q~~~lf~---~tv~eni~-----~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqk  157 (251)
T d1jj7a_          87 HRQVAA-VGQEPQVFG---RSLQENIA-----YGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQR  157 (251)
T ss_dssp             HHHEEE-ECSSCCCCS---SBHHHHHH-----CSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHH
T ss_pred             HHHhhh-ccccccccC---cchhhhhh-----hhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHc
Confidence            123454 555443221   23333221     222222222221         1223333222    2345568999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ||++|||||+.+|+|||+||||++||+.+...+.++|.+
T Consensus       158 QRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~  196 (251)
T d1jj7a_         158 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE  196 (251)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             eEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999865

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=4.6e-35  Score=245.11  Aligned_cols=162  Identities=12%  Similarity=0.117  Sum_probs=124.4

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCC------CCC
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------KPP  149 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~------~~~  149 (255)
                      .|++ ++.|.|++..      -||||++. +|+++|+||||||||||+|+|+|+++   |++|+ .+++..      .+.
T Consensus         2 ~l~v-~~~k~~g~~~------~~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r   70 (240)
T d2onka1           2 FLKV-RAEKRLGNFR------LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CEEE-EEEEEETTEE------EEEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             EEEE-EEEEEECCEE------EEEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHc
Confidence            3677 6789998832      27999995 68999999999999999999999998   99999 454421      123


Q ss_pred             CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhccCC
Q 025293          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (255)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~~~~  227 (255)
                      .+|+ ++++.. ++ +.+++.+++.+..+  ..........+.++++.+++.  .+.++..|||||||||+|||||+.+|
T Consensus        71 ~ig~-v~Q~~~-l~-~~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P  145 (240)
T d2onka1          71 GIGF-VPQDYA-LF-PHLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP  145 (240)
T ss_dssp             CCBC-CCSSCC-CC-TTSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             Ccee-eccchh-hc-ccchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccC
Confidence            4665 454432 22 23677777655321  122222334578888888876  56788999999999999999999999


Q ss_pred             cEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          228 KVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       228 ~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ++||+||||++||+..+..+++++.+.
T Consensus       146 ~illlDEPts~LD~~~~~~i~~~i~~l  172 (240)
T d2onka1         146 RLLLLDEPLSAVDLKTKGVLMEELRFV  172 (240)
T ss_dssp             SSBEEESTTSSCCHHHHHHHHHHHHHH
T ss_pred             CceEecCccccCCHHHHHHHHHHHHHH
Confidence            999999999999999999999998764

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-34  Score=240.51  Aligned_cols=161  Identities=14%  Similarity=0.114  Sum_probs=117.7

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC--------
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~--------  148 (255)
                      |+++||+++|++..+.  +|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++....        
T Consensus         2 I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr   76 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR   76 (241)
T ss_dssp             EEEEEEEEESSTTSCE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred             eEEEEEEEEeCCCCcc--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchhhhh
Confidence            6899999999654334  4599999999999999999999999999999999998   99999 55553221        


Q ss_pred             CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhcc---------c----CCccCCCCCccccc
Q 025293          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD  215 (255)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~---------~----~~~~~~~lS~G~kq  215 (255)
                      ..+++ +.++.+.+.   .++.+++.+     + ............++..++         .    .......|||||||
T Consensus        77 ~~i~~-v~Q~~~lf~---~Ti~eNi~~-----~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~Q  146 (241)
T d2pmka1          77 RQVGV-VLQDNVLLN---RSIIDNISL-----A-NPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ  146 (241)
T ss_dssp             HHEEE-ECSSCCCTT---SBHHHHHCT-----T-STTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHH
T ss_pred             ceEEE-EecccccCC---ccccccccc-----c-CccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHH
Confidence            23555 566554322   233332221     1 122333333333333221         1    12345789999999


Q ss_pred             chhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       216 rv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      |++|||+|+.+|+|||+||||++||+.+...+.+.|.+
T Consensus       147 RvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~  184 (241)
T d2pmka1         147 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK  184 (241)
T ss_dssp             HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998875

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=4.2e-34  Score=242.51  Aligned_cols=164  Identities=15%  Similarity=0.109  Sum_probs=118.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCC-------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (255)
                      -|+++||+++|++...+  +|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++....       
T Consensus        13 ~I~~~nvsf~Y~~~~~~--~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1          13 DLEFRNVTFTYPGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             CEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred             EEEEEEEEEEeCCCCCc--eeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhh
Confidence            48999999999873333  5699999999999999999999999999999999998   99999 45553211       


Q ss_pred             -CCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhc---------cc----CCccCCCCCcccc
Q 025293          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQ----GSVYAPSFDHGVG  214 (255)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~---------~~----~~~~~~~lS~G~k  214 (255)
                       ..+++ +.++.+.+.   .+..++.     .++.........+..+++..+         .+    ...+...||||||
T Consensus        88 r~~i~~-v~Q~~~l~~---~ti~~n~-----~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqk  158 (253)
T d3b60a1          88 RNQVAL-VSQNVHLFN---DTVANNI-----AYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR  158 (253)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHH-----HTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred             hheEEE-EeeccccCC---cchhhhh-----hhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHH
Confidence             13454 555443222   1222211     122222333344433333222         11    2234568999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++|||||+.+|+||||||||++||+.+...+.+.|.+.
T Consensus       159 QRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l  198 (253)
T d3b60a1         159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL  198 (253)
T ss_dssp             HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988753

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.98  E-value=5.5e-34  Score=241.68  Aligned_cols=163  Identities=14%  Similarity=0.095  Sum_probs=120.3

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCC--------
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (255)
                      -|+++||+++|++..++  +|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++...        
T Consensus        16 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~l   90 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL   90 (255)
T ss_dssp             CEEEEEEEECSCSSSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             EEEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHh
Confidence            48999999999774334  4599999999999999999999999999999999998   99999 4554321        


Q ss_pred             CCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc---------CC----ccCCCCCcccc
Q 025293          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (255)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~---------~~----~~~~~lS~G~k  214 (255)
                      +..+++ +.++.+.+.   .++.+|+.+     +.+ ......+..+++..++.         .+    .....|||||+
T Consensus        91 r~~i~~-v~Q~~~lf~---~Ti~eNi~~-----g~~-~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~  160 (255)
T d2hyda1          91 RNQIGL-VQQDNILFS---DTVKENILL-----GRP-TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK  160 (255)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHHGG-----GCS-SCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred             hheeee-eeccccCCC---CCHHHHHhc-----cCc-CCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHH
Confidence            124565 555543322   244444332     111 22334444444443321         12    23457999999


Q ss_pred             cchhhhhhhccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       215 qrv~la~~l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ||++|||||+.+|+||||||||++||+.+...+.+.|.+.
T Consensus       161 QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l  200 (255)
T d2hyda1         161 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVL  200 (255)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998653

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3e-33  Score=234.52  Aligned_cols=159  Identities=19%  Similarity=0.125  Sum_probs=115.6

Q ss_pred             CeEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCC-----
Q 025293           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP-----  149 (255)
Q Consensus        76 ~~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~-----  149 (255)
                      .+|+++||+++|        +|++|||+|++||++||+||||||||||+++|+|+.    |++|+ .++++....     
T Consensus         2 ~il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~----~~~G~I~~~g~~i~~~~~~~   69 (231)
T d1l7vc_           2 IVMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGKGSIQFAGQPLEAWSATK   69 (231)
T ss_dssp             EEEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC----CCSSEEEESSSBGGGSCHHH
T ss_pred             eEEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCceEEEECCEECCcCCHHH
Confidence            378999998664        459999999999999999999999999999999976    88998 455432111     


Q ss_pred             ---CeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc--CCccCCCCCcccccchhhhhhhc
Q 025293          150 ---DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (255)
Q Consensus       150 ---~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~--~~~~~~~lS~G~kqrv~la~~l~  224 (255)
                         ..++ +.+.....+.  .+    ........ .........+.++++.+++.  .++++..|||||+||+++|++|+
T Consensus        70 ~~~~~~~-~~~~~~~~~~--~~----v~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~  141 (231)
T d1l7vc_          70 LALHRAY-LSQQQTPPFA--TP----VWHYLTLH-QHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL  141 (231)
T ss_dssp             HHHHEEE-ECSCCCCCSS--CB----HHHHHHHH-CSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             HHhhcee-eeccccCCcc--cc----HHHHhhhc-cchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHH
Confidence               1233 3332221110  11    11111111 22233345566777777765  45678899999999999999998


Q ss_pred             c-------CCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          225 L-------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       225 ~-------~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      .       +|+||||||||++||+..+..+.+++++.
T Consensus       142 ~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l  178 (231)
T d1l7vc_         142 QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSAL  178 (231)
T ss_dssp             HHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHH
T ss_pred             hhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHH
Confidence            5       67999999999999999999999998763

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.2e-31  Score=226.08  Aligned_cols=149  Identities=11%  Similarity=0.067  Sum_probs=102.6

Q ss_pred             eEEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCc-cCCCCCCCCCeEEEE
Q 025293           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (255)
Q Consensus        77 ~l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (255)
                      .|.++|+++  ++  ++  +|+||||+|++||++||+||||||||||+++|+|+++   |++|+ .+++     .+++ +
T Consensus        38 ~i~~~~~~~--~g--~p--vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g-----~i~~-v  102 (281)
T d1r0wa_          38 NVSFSHLCL--VG--NP--VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSG-----RVSF-C  102 (281)
T ss_dssp             --CHHHHHH--TT--CE--EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCS-----CEEE-E
T ss_pred             cEEEEEcCC--CC--Ce--EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECC-----EEEE-E
Confidence            344555543  33  34  5599999999999999999999999999999999998   99987 3443     2444 4


Q ss_pred             ecCCCCCCCccCCcccChHHHHHhcCCCCCccHHHHHHHHHhhccc-------------CCccCCCCCcccccchhhhhh
Q 025293          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDIL  222 (255)
Q Consensus       156 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~-------------~~~~~~~lS~G~kqrv~la~~  222 (255)
                      .+....+.   .++.+       +..+...........+++...+.             .......|||||||||++||+
T Consensus       103 ~Q~~~l~~---~tv~e-------ni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARa  172 (281)
T d1r0wa_         103 SQFSWIMP---GTIKE-------NIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARA  172 (281)
T ss_dssp             CSSCCCCS---EEHHH-------HHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHH
T ss_pred             eccccccC---ceeec-------cccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHH
Confidence            44333221   12222       22222222333344444433221             123345799999999999999


Q ss_pred             hccCCcEEEEcCCCCCCChhHHHHHHHH
Q 025293          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (255)
Q Consensus       223 l~~~~~illlDep~~~LD~~~~~~l~~l  250 (255)
                      |+.+|+||||||||++||+.....+++.
T Consensus       173 L~~~p~illLDEPts~LD~~~~~~i~~~  200 (281)
T d1r0wa_         173 VYKDADLYLLDSPFGYLDVFTEEQVFES  200 (281)
T ss_dssp             HHSCCSEEEEESCCCSSCHHHHHHHHHH
T ss_pred             HHhCccchhhcCccccCCHHHHHHHHHH
Confidence            9999999999999999999998888764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.31  E-value=9.6e-15  Score=114.94  Aligned_cols=45  Identities=11%  Similarity=-0.152  Sum_probs=34.1

Q ss_pred             CCCcccccchhhhhhhccCCcEEEEcCCCCC--CChhHHHHHHHHHH
Q 025293          208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLF--LDGGVWKDVSSMFD  252 (255)
Q Consensus       208 ~lS~G~kqrv~la~~l~~~~~illlDep~~~--LD~~~~~~l~~ll~  252 (255)
                      .+++|++++.++++++..+|+++++|||...  .+......+.+++.
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~  127 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH  127 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhc
Confidence            3678999999999999999999999997433  34445555555553

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=4.3e-11  Score=102.43  Aligned_cols=121  Identities=22%  Similarity=0.311  Sum_probs=84.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCCCCCc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF  186 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  186 (255)
                      .-+|||.|++|||||||.+.|..++.   -..+        .+.+. ++.+|+|+.+...+.    .......+|.|..+
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~---~~~~--------~~~v~-~Is~D~F~~~~~~l~----~~~~~~~~g~Pes~  143 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLS---RWPE--------HRRVE-LITTDGFLHPNQVLK----ERGLMKKKGFPESY  143 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHT---TSTT--------CCCEE-EEEGGGGBCCHHHHH----HHTCTTCTTSGGGB
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHh---hhcC--------CCceE-EEeeeeeECCchHHH----HhcCCccCCchHhh
Confidence            45999999999999999999999884   1110        23333 489999975432110    00112245667778


Q ss_pred             cHHHHHHHHHhhccc-CCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChhH
Q 025293          187 NPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  243 (255)
Q Consensus       187 ~~~~~~~~l~~l~~~-~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~~  243 (255)
                      +...+.+.+..+.-+ .....+.||.-...++.-.......|+|+|+|+.+...|+..
T Consensus       144 D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~  201 (308)
T d1sq5a_         144 DMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMD  201 (308)
T ss_dssp             CHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGG
T ss_pred             hHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccc
Confidence            888888888887655 346778888877777765566677889999999999888753

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.82  E-value=3.4e-09  Score=89.46  Aligned_cols=125  Identities=22%  Similarity=0.339  Sum_probs=79.7

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCccc-C--hHHHHHhcCCC
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAME-D--PKEAHARRGAP  183 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~-~--~~~~~~~~~~~  183 (255)
                      .-+|||.|+.|||||||.+.|.-.+.   ...|       ....+. ++++|+|+....+..... .  .......+|.|
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~---~~~~-------~~~~v~-~iS~DdfY~t~~~r~~L~~~~~~~pl~~~RG~P   95 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLM---EKYG-------GEKSIG-YASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLP   95 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH---HHHG-------GGSCEE-EEEGGGGBCCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHH---HHhC-------CCcceE-eeccCCCCCCHHHHHHHhhhccccccceecCCC
Confidence            45899999999999999988865542   0000       012233 479999976421100000 0  00112236778


Q ss_pred             CCccHHHHHHHHHhhcccC------CccCCCCC----cccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293          184 WTFNPLLLLNCLKNLRNQG------SVYAPSFD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~------~~~~~~lS----~G~kqrv~la~~l~~~~~illlDep~~~LD~~  242 (255)
                      ..++...+.++++.+.-..      ...+|.|+    .|...|+.-...+...++|+|+++.+.|..|.
T Consensus        96 gThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p~  164 (286)
T d1odfa_          96 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  164 (286)
T ss_dssp             TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             cchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccch
Confidence            8899888888888876442      25577776    45666766555556678999999999998664

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=5e-08  Score=78.18  Aligned_cols=119  Identities=24%  Similarity=0.390  Sum_probs=63.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCccCCcccChHHHHHhcCC-----
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-----  182 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-----  182 (255)
                      -+|||.|+.|||||||.+.|+-.+.....+.+        ... ..++.+|+|+...   ...   .......+.     
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~--------~~~-~~vi~~D~yy~~~---~~~---~~~~~~~~~~~~~~   67 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYR--------QKQ-VVILSQDSFYRVL---TSE---QKAKALKGQFNFDH   67 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGG--------GCS-EEEEEGGGGBCCC---CHH---HHHHHHTTCSCTTS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHhchhccccC--------CCc-eEEEecccccccc---chh---hhhhhhhcccccCC
Confidence            47999999999999999999887731000000        112 2457888875321   111   111111111     


Q ss_pred             CCCccHHHHHHHHHhhcccCCccCCCCCcccccchhhhhhhccCCcEEEEcCCCCCCChh
Q 025293          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (255)
Q Consensus       183 ~~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la~~l~~~~~illlDep~~~LD~~  242 (255)
                      +.......+...+..+........+.+..-...+..... ....++++|++++++..+..
T Consensus        68 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiveg~~~l~~~~  126 (213)
T d1uj2a_          68 PDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQE  126 (213)
T ss_dssp             GGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSHH
T ss_pred             cHHHHHHHHHhhhhhhhcCCcccccccccccccccCceE-EecccceEEecchhhhccHH
Confidence            222333444455555544443333444333333322221 22468899999999988763

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.19  E-value=2.6e-07  Score=77.55  Aligned_cols=117  Identities=15%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCccCCCCCCCCCeEEEEecCCCCCCCc-cCCcccChHHHHH--hcCC--C
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLS-QLDAMEDPKEAHA--RRGA--P  183 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~-~l~~~~~~~~~~~--~~~~--~  183 (255)
                      +|||.|++||||||+.+.|...+.    ..|         .. ..++..|+|+-+.. ++...........  .+.+  +
T Consensus         6 IIgIaG~SGSGKTTva~~l~~i~~----~~~---------v~-~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~P   71 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFDQIFR----REG---------VK-AVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSY   71 (288)
T ss_dssp             EEEEESCC---CCTHHHHHHHHHH----HHT---------CC-EEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSG
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHh----hcC---------CC-eEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCCc
Confidence            899999999999999999988874    111         12 23588888864321 0000000000111  1122  3


Q ss_pred             CCccHHHHHHHHHhhcccCCccCCCCCcccccchhhh---------hhhccCCcEEEEcCCCCCC
Q 025293          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDD---------ILVGLQHKVVIVDGNYLFL  239 (255)
Q Consensus       184 ~~~~~~~~~~~l~~l~~~~~~~~~~lS~G~kqrv~la---------~~l~~~~~illlDep~~~L  239 (255)
                      ...+...+.+.++.++-+.....+.|++....+..-.         ..+..++++||+++.+.+.
T Consensus        72 ~A~d~dlL~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~  136 (288)
T d1a7ja_          72 EANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAV  136 (288)
T ss_dssp             GGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTC
T ss_pred             ccccHHHHHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhcc
Confidence            4456667777788887777666777776554443211         1234467999999998876

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=2.6e-06  Score=64.54  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=22.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++|+|++|||||||++.|+..+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999998873

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=2.7e-07  Score=71.76  Aligned_cols=34  Identities=32%  Similarity=0.346  Sum_probs=27.9

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.++++.+| ++.|+|+|||||||+|..|.-.+.
T Consensus        16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             EEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             eeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            5556666665 889999999999999999987663

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.80  E-value=6.4e-06  Score=63.92  Aligned_cols=25  Identities=40%  Similarity=0.597  Sum_probs=23.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.++.|+||+|||||||++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            8899999999999999999998776

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=9.6e-06  Score=61.50  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=25.0

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+.++.|+|++||||||+.+.|+..+
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l   30 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQL   30 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999999999987

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.74  E-value=8.9e-06  Score=61.98  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+++|+|++|||||||++.|...+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3789999999999999998888774

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.72  E-value=8.2e-06  Score=62.03  Aligned_cols=26  Identities=38%  Similarity=0.529  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .|.++.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998765

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.71  E-value=1.2e-05  Score=61.08  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=25.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+|.+|.|+|++||||||+.+.|+-.+
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L   30 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTL   30 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            579999999999999999999999877

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1.2e-05  Score=61.12  Aligned_cols=24  Identities=42%  Similarity=0.661  Sum_probs=22.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .|.|+||+|+|||||++.++..+.
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHHHH
Confidence            478999999999999999999985

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.62  E-value=9.9e-05  Score=58.85  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=24.9

Q ss_pred             cccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       100 isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++.-.+..+++++||+|+||||.+=-|+-.+
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            44555677899999999999999876666555

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.59  E-value=1.9e-05  Score=59.86  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.5

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++|-.+.|.||+||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            567889999999999999999998766

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.57  E-value=1.6e-05  Score=66.31  Aligned_cols=49  Identities=14%  Similarity=0.011  Sum_probs=39.8

Q ss_pred             CCCCCcccccchhhhhh----hccCCcEEEEcCCCCCCChhHHHHHHHHHHhh
Q 025293          206 APSFDHGVGDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (255)
Q Consensus       206 ~~~lS~G~kqrv~la~~----l~~~~~illlDep~~~LD~~~~~~l~~ll~~~  254 (255)
                      ...+|.|+++...++..    ....+.++++|||=+.|+|.....+.++|.+.
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~  269 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKEN  269 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHh
Confidence            34679999998765543    45677899999999999999999999998753

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.56  E-value=1.9e-05  Score=60.96  Aligned_cols=26  Identities=27%  Similarity=0.595  Sum_probs=23.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .-+|||.|+.|||||||.+.|.-.+.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            34799999999999999999998773

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.55  E-value=2e-05  Score=59.91  Aligned_cols=24  Identities=25%  Similarity=0.401  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..|+|+||.|||||||.+.|+..+
T Consensus         8 K~I~i~G~~GsGKTTla~~La~~~   31 (192)
T d1lw7a2           8 KTVAILGGESSGKSVLVNKLAAVF   31 (192)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999999877

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.52  E-value=2.8e-05  Score=58.76  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..+|.|.|++||||||+.+.|+..+
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l   27 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHc
Confidence            4689999999999999999999987

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.7e-05  Score=61.80  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.++.|+||+|+|||||++.|.-..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58899999999999999999888765

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.47  E-value=3.7e-05  Score=58.58  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=22.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+|+|.|+.||||||+++.|+-.+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5899999999999999999998774

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.46  E-value=3.2e-05  Score=57.39  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=19.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++.|.|++|||||||.+.|...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            47889999999999999977553

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.43  E-value=3.8e-05  Score=57.74  Aligned_cols=24  Identities=29%  Similarity=0.580  Sum_probs=22.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++.|.||.||||||+.+.|+..+
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~   26 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQL   26 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHc
Confidence            478999999999999999999876

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=4e-05  Score=56.93  Aligned_cols=23  Identities=39%  Similarity=0.676  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+||+||||||+.+.|+-.+
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L   26 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQL   26 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47788999999999999999877

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.41  E-value=8e-05  Score=59.42  Aligned_cols=23  Identities=43%  Similarity=0.666  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+|+.|||||||++.|...+
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            68999999999999999998766

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=4e-05  Score=66.17  Aligned_cols=47  Identities=11%  Similarity=0.022  Sum_probs=39.3

Q ss_pred             CCCCcccccchhhhhhh----ccCCcEEEEcCCCCCCChhHHHHHHHHHHh
Q 025293          207 PSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (255)
Q Consensus       207 ~~lS~G~kqrv~la~~l----~~~~~illlDep~~~LD~~~~~~l~~ll~~  253 (255)
                      ..+||||+.++++|..+    ..+++++++|||+++||+..+..+.++|.+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~  381 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR  381 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            34699999987766543    557789999999999999999999999864

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=2.7e-05  Score=60.09  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|.+|.|+|++||||||+.+.|+-.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            688999999999999999999998773

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.36  E-value=3.3e-05  Score=62.12  Aligned_cols=26  Identities=31%  Similarity=0.438  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|...+++|++|+|||||+|.|.+..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchh
Confidence            58999999999999999999998754

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.36  E-value=4.5e-05  Score=57.48  Aligned_cols=23  Identities=39%  Similarity=0.661  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+||.||||||+.+.|+-.+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999998766

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.29  E-value=4.6e-05  Score=59.26  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .|+|+|+.|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999985

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.26  E-value=7.9e-05  Score=64.23  Aligned_cols=41  Identities=20%  Similarity=0.448  Sum_probs=29.5

Q ss_pred             EEecCchheehhhhcccccccccccccCCCcEEEEECCCCCcHHHHHHHHH
Q 025293           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus        78 l~v~~lsk~y~~~~~~il~l~~isl~i~~GeivgLiGpNGsGKSTLLk~L~  128 (255)
                      |+++|. ++|.+.       ..|+|  ..+.+.+|+|+|||||||+|..|.
T Consensus         6 l~l~NF-ks~~~~-------~~i~f--~~~~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_           6 LELSNF-KSYRGV-------TKVGF--GESNFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEESC-SSCCSE-------EEEEC--TTCSEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEeCe-eeeCCC-------EEEeC--CCCCEEEEECCCCCCHHHHHHHHH
Confidence            667775 455431       23333  445589999999999999999986

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.26  E-value=7.2e-05  Score=57.14  Aligned_cols=23  Identities=43%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.|.|++||||||+.+.|+..+
T Consensus         3 iivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            67889999999999999999988

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.25  E-value=0.0017  Score=51.20  Aligned_cols=26  Identities=31%  Similarity=0.365  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.+++++||+|+||||.+=-|+..+
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~   30 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYY   30 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999887777766

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=8.8e-05  Score=57.52  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.|+||+|||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998775

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.23  E-value=8.6e-05  Score=57.60  Aligned_cols=27  Identities=37%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+..+|.|+||.||||||+.+.|+-.+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            356789999999999999999998765

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.19  E-value=0.00011  Score=56.82  Aligned_cols=27  Identities=37%  Similarity=0.534  Sum_probs=23.9

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++|-.+.|+||.||||||+.+.|+-.+
T Consensus         1 p~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           1 PKGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence            468889999999999999999999655

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.17  E-value=0.00011  Score=54.34  Aligned_cols=23  Identities=26%  Similarity=0.205  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|++|+|||||++.|.+-.
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999998843

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.15  E-value=0.0001  Score=57.49  Aligned_cols=22  Identities=50%  Similarity=0.735  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.|+||+|||||||++.|+-..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998765

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00013  Score=56.72  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=23.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++-.++.|+||.||||||+.+.|+..+
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999999866

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.14  E-value=0.00013  Score=55.19  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +.|+|+.||||||+.+.|+..+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999999883

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.12  E-value=9.5e-05  Score=57.50  Aligned_cols=28  Identities=29%  Similarity=0.578  Sum_probs=25.0

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.++.++.|+||.||||||+.+.|+-.+
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578899999999999999999998765

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.12  E-value=0.0001  Score=55.10  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=22.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |-.++|+|+.|+|||||++.|+|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            5578999999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.12  E-value=0.00014  Score=53.89  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+|+.|||||||++.+.+-.
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998754

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00016  Score=55.84  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..+.|+||+|+|||||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            478999999999999999888755

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.11  E-value=0.00015  Score=58.67  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=25.1

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +|+++.- .+.++.|.|||.+||||+||.++-.
T Consensus        33 Ndi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          33 NPLNLSP-QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             EEEEECS-SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eeEEECC-CceEEEEeccCchhhHHHHHHHHHH
Confidence            6665553 3468899999999999999998643

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.10  E-value=0.00015  Score=58.73  Aligned_cols=29  Identities=28%  Similarity=0.517  Sum_probs=24.5

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+....+.|.||.|||||||.+.|++.+.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            33455688999999999999999999873

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=97.07  E-value=0.00016  Score=53.89  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|||||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00017  Score=55.38  Aligned_cols=28  Identities=36%  Similarity=0.347  Sum_probs=23.3

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +.-++.+++.++|++||||||+.+.++-
T Consensus         9 ~~~~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2           9 LLSPNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCSSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHH
Confidence            3446778999999999999999987754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00016  Score=55.43  Aligned_cols=25  Identities=32%  Similarity=0.492  Sum_probs=21.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .+=.|||+|..|+|||||++.|+|.
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4457999999999999999999874

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.02  E-value=3.9e-05  Score=61.92  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|...+++|++|+|||||+|.|.|..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~  121 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPEL  121 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC--
T ss_pred             ccceEEEECCCCccHHHHHHhhccHh
Confidence            57888999999999999999998865

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.01  E-value=0.00015  Score=55.06  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .|+|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998854

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.01  E-value=0.00019  Score=57.59  Aligned_cols=30  Identities=30%  Similarity=0.370  Sum_probs=23.6

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +|+.+.   ++++.|.|||.+||||+||.++-.
T Consensus        29 Ndi~~~---~~~~iiTGpN~~GKSt~lk~i~l~   58 (224)
T d1ewqa2          29 NDLEMA---HELVLITGPNMAGKSTFLRQTALI   58 (224)
T ss_dssp             EEEEES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred             ceEEeC---CcEEEEECCCccccchhhhhhHHH
Confidence            555543   358999999999999999987643

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.00  E-value=0.00011  Score=56.10  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -|+|+|+.|+|||||++.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999998854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.00  E-value=0.00019  Score=55.83  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .|+|+|+.|||||||++.|.|..
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.00  E-value=0.00016  Score=55.98  Aligned_cols=23  Identities=43%  Similarity=0.624  Sum_probs=20.1

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .-++||.|+.||||||+.+.|.-
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            35899999999999999998853

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.00  E-value=0.00021  Score=54.29  Aligned_cols=23  Identities=26%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+|+.||||||+.+.|+-.+
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~L   26 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARAL   26 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            35689999999999999999877

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00016  Score=54.90  Aligned_cols=22  Identities=32%  Similarity=0.661  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +|+|+|..|+|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999985

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.99  E-value=0.00017  Score=55.11  Aligned_cols=22  Identities=36%  Similarity=0.613  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +|+|+|..|+|||||++.|+|.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999885

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.98  E-value=0.00014  Score=56.21  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -++.|+||.||||||+.+.|+--+
T Consensus         4 m~I~i~GppGsGKsT~a~~La~~~   27 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKTKY   27 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999998766

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0002  Score=55.30  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=25.5

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+++.|.||+|+|||||+-.++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999998888765

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.98  E-value=0.00012  Score=56.74  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=23.9

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++-+|+|-|+.||||||+++.|...+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            456799999999999999999998776

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.98  E-value=0.00022  Score=53.93  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +.|+|+.||||||+.+.|+-.+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56789999999999999998873

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0002  Score=55.30  Aligned_cols=23  Identities=43%  Similarity=0.678  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.|+||.||||||..+.|+-.+
T Consensus         3 iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           3 VVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            78999999999999999998866

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.97  E-value=0.00011  Score=55.78  Aligned_cols=26  Identities=23%  Similarity=0.149  Sum_probs=21.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-.++|+|++|||||||++.|.+-.
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            34578899999999999999987743

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00025  Score=56.05  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.3

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ++|-+|+|-|+.||||||+.+.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999998773

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.94  E-value=0.00023  Score=54.27  Aligned_cols=23  Identities=43%  Similarity=0.569  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+||.||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998776

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00026  Score=55.56  Aligned_cols=26  Identities=31%  Similarity=0.424  Sum_probs=24.2

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.+|+|-|+.||||||+++.|...+
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L   26 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETL   26 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999999876

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.93  E-value=8.5e-05  Score=57.13  Aligned_cols=22  Identities=50%  Similarity=0.622  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |||+|+.++|||||++.|+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEEC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999987754

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.93  E-value=0.00028  Score=54.84  Aligned_cols=24  Identities=21%  Similarity=0.537  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -++.++|..|||||||.+.|+..+
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l   26 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYL   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            478999999999999999999766

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00029  Score=55.22  Aligned_cols=24  Identities=33%  Similarity=0.736  Sum_probs=22.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|+|.||.||||||+.+.|+--+.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            899999999999999999998773

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00036  Score=55.33  Aligned_cols=31  Identities=19%  Similarity=0.370  Sum_probs=24.2

Q ss_pred             ccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++-++..+++++||+|+||||.+--|+-.+
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~   33 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQF   33 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            3344455789999999999999887777666

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.88  E-value=0.0046  Score=49.84  Aligned_cols=27  Identities=37%  Similarity=0.512  Sum_probs=23.8

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+|+++.|.|+.|+|||||+-.|+-.+
T Consensus        27 ~pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          27 VAGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            359999999999999999998887765

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.88  E-value=0.00031  Score=55.29  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +++|.||.||||||..+.|+-.+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            688999999999999999998774

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.85  E-value=0.00029  Score=53.95  Aligned_cols=23  Identities=43%  Similarity=0.634  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.|+||.||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999876

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.81  E-value=0.00024  Score=53.29  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|+.|+|||||++.|.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            58899999999999999987743

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00014  Score=55.65  Aligned_cols=22  Identities=55%  Similarity=0.761  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |||+|..++|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            8999999999999999998754

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.75  E-value=0.00036  Score=54.74  Aligned_cols=21  Identities=48%  Similarity=0.675  Sum_probs=18.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~  128 (255)
                      -++||.|..||||||+++++.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            379999999999999999774

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.74  E-value=0.00036  Score=53.19  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+||.||||||..+.|+-.+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998766

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.73  E-value=0.00057  Score=54.01  Aligned_cols=27  Identities=30%  Similarity=0.352  Sum_probs=22.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ...++.++||+|+||||.+--|+..+.
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~   35 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK   35 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456899999999999998877777663

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.73  E-value=0.00043  Score=52.88  Aligned_cols=23  Identities=48%  Similarity=0.765  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+||.||||||+.+.|+-.+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998776

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.71  E-value=0.00057  Score=53.93  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.=++|.++-|.|.+||||||+.+.|.-.+
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            344689999999999999999999998654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.00043  Score=58.61  Aligned_cols=27  Identities=33%  Similarity=0.484  Sum_probs=24.5

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.-+|||.|+.|||||||+..|...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            457789999999999999999998877

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.70  E-value=0.00049  Score=51.62  Aligned_cols=22  Identities=23%  Similarity=0.289  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999988763

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.0002  Score=56.98  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.+|+|-|+-||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999998876

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.69  E-value=0.0005  Score=54.41  Aligned_cols=26  Identities=15%  Similarity=0.304  Sum_probs=24.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.+|+|-|+.||||||+.+.|.-.+
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L   27 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKL   27 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHH
Confidence            79999999999999999999999877

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.00046  Score=53.84  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -|+|+|+.|+|||||++.|.+-.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            48999999999999999998743

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.67  E-value=0.00044  Score=52.18  Aligned_cols=27  Identities=26%  Similarity=0.284  Sum_probs=22.7

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.-.++|+|..|||||||++.|.+..
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            344578999999999999999998753

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.65  E-value=0.00052  Score=52.49  Aligned_cols=23  Identities=48%  Similarity=0.739  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+||.||||||+.+.|+-.+
T Consensus         4 rIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           4 RMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            46799999999999999999876

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.62  E-value=0.00058  Score=54.17  Aligned_cols=23  Identities=43%  Similarity=0.749  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|.||+|+||||++++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            37799999999999999999876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.61  E-value=0.00062  Score=51.46  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         4 Ki~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           4 KVIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4789999999999999998763

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.61  E-value=0.00064  Score=52.67  Aligned_cols=26  Identities=23%  Similarity=0.526  Sum_probs=22.5

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.-.+.|+||.||||||+.+.|+-.+
T Consensus         5 r~mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           5 RLLRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHH
Confidence            34578899999999999999999765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.57  E-value=0.00017  Score=53.75  Aligned_cols=23  Identities=30%  Similarity=0.447  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|+|||||++.|+|..
T Consensus         2 kI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           2 RMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999975

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00064  Score=53.39  Aligned_cols=21  Identities=48%  Similarity=0.650  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      ++||+|..||||||..+++..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            799999999999999998863

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.0007  Score=51.05  Aligned_cols=22  Identities=14%  Similarity=0.234  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++++|..|+|||||++.+.+-
T Consensus         7 Ki~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           7 KILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHcC
Confidence            4889999999999999988764

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00019  Score=54.51  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.|+|+|+.++|||||++.|.+..
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4569999999999999999997753

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.55  E-value=0.00079  Score=53.87  Aligned_cols=25  Identities=40%  Similarity=0.611  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..+.|.||+|+||||++++|+..+.
T Consensus        53 ~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHHH
Confidence            4688999999999999999999763

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00073  Score=51.26  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4899999999999999988763

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00065  Score=51.02  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988774

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.53  E-value=0.00079  Score=52.27  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|+|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999877

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.48  E-value=0.00096  Score=50.34  Aligned_cols=30  Identities=33%  Similarity=0.432  Sum_probs=26.8

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ...++|.+++|-|+=|||||||.|.++.-+
T Consensus        28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~l   57 (158)
T d1htwa_          28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ccCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence            345789999999999999999999998877

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.47  E-value=0.00086  Score=53.09  Aligned_cols=27  Identities=26%  Similarity=0.397  Sum_probs=18.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +...+++++||+|+||||.+=-|+-.+
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~   36 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFY   36 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            457899999999999999876667665

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.46  E-value=0.00055  Score=55.78  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|+|||||+|.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58999999999999999999964

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.45  E-value=0.00033  Score=59.19  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=24.8

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +..+.-+.|.|+.||||||||+.|++.++
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence            44456689999999999999999999883

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.45  E-value=0.0009  Score=50.09  Aligned_cols=21  Identities=19%  Similarity=0.321  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|+.|+|||||++.+.+
T Consensus         4 Kv~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           4 KMVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987775

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.45  E-value=0.00085  Score=53.08  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            6799999999999999999875

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.00089  Score=53.23  Aligned_cols=24  Identities=50%  Similarity=0.750  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+-|.||.|+||||+.++|+..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            367999999999999999999884

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.0079  Score=50.12  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ...+.++||+|+|||.|.+.|+-.+
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l   76 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKAL   76 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhc
Confidence            3468899999999999999999988

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.37  E-value=0.0007  Score=51.74  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |||+|...||||||++.|++.-
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999998743

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0011  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.369  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           5 KYIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHhcC
Confidence            4789999999999999987654

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.36  E-value=0.001  Score=52.95  Aligned_cols=24  Identities=42%  Similarity=0.681  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      -+.+.||.|+||||+.+++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            356999999999999999999873

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.35  E-value=0.00099  Score=49.90  Aligned_cols=22  Identities=36%  Similarity=0.474  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++++|.+|+|||||++.+.+-
T Consensus         4 Ki~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           4 KILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.001  Score=49.93  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=20.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -.|+|+|+.|+|||||++.+.+-
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            36899999999999999988753

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.34  E-value=0.00074  Score=53.29  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      +++|.++-|.|+.|||||||+-.++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            77999999999999999999876653

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.34  E-value=0.0011  Score=55.51  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=21.9

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .-+.++||.|||||+|.|.|+..+.
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEECCCCCCHHHHHHHHhhccc
Confidence            4556899999999999999999873

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.0013  Score=52.23  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=25.4

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -|++|.++.|.|++|||||||.-.++...
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~~   61 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVTA   61 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            37899999999999999999998887543

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.31  E-value=0.0012  Score=50.34  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Kv~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           4 KVIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998876

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0011  Score=49.95  Aligned_cols=21  Identities=29%  Similarity=0.491  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|..|+|||||++.+.+
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            689999999999999998766

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.27  E-value=0.0011  Score=52.96  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=22.9

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.++.|.||.|+|||||++.++-..
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46789999999999999999887766

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.27  E-value=0.0012  Score=52.45  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|||+|...||||||++.|.+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            59999999999999999998864

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0013  Score=49.18  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5899999999999999988764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=96.25  E-value=0.0012  Score=54.64  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.2

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.=+.|-+|+..+|+|+.|+|||||+..|+...
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            445678899999999999999999999998755

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0014  Score=49.16  Aligned_cols=21  Identities=38%  Similarity=0.495  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|..|+|||||++.+..
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999998875

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0012  Score=49.21  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988764

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0012  Score=49.69  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999988763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0012  Score=49.73  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999987765

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0014  Score=49.08  Aligned_cols=21  Identities=29%  Similarity=0.300  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .+.|+|..|+|||||++.+.+
T Consensus         5 KivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999998776

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.22  E-value=0.0014  Score=55.18  Aligned_cols=27  Identities=33%  Similarity=0.457  Sum_probs=23.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.-++||.|+.|+|||||+..|...+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999998765

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.21  E-value=0.00071  Score=51.10  Aligned_cols=22  Identities=32%  Similarity=0.351  Sum_probs=19.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~G  129 (255)
                      -.++|+|+.|+|||||++.+.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4689999999999999998865

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0014  Score=49.95  Aligned_cols=21  Identities=24%  Similarity=0.276  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|+.|+|||||++.+.+
T Consensus         7 Ki~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           7 KLLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhc
Confidence            488999999999999998765

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.19  E-value=0.0012  Score=53.76  Aligned_cols=33  Identities=15%  Similarity=0.200  Sum_probs=27.3

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +++..-+.+|+++.|.|++|+|||||+.-|+-.
T Consensus        26 D~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             HHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            444445789999999999999999998887753

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0015  Score=48.83  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999888764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.18  E-value=0.0012  Score=51.61  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=22.1

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHH
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~  128 (255)
                      +++|+++.|.|++|+|||||+--++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7799999999999999999985443

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0016  Score=49.15  Aligned_cols=21  Identities=43%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|+.|+|||||++.+..
T Consensus         8 KI~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           8 KVILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999987765

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.16  E-value=0.0013  Score=52.22  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.9

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|.++.|.|++|||||||+.-++-..
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999997777654

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.16  E-value=0.0016  Score=48.46  Aligned_cols=22  Identities=18%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         4 Kv~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           4 KIIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.0019  Score=52.50  Aligned_cols=26  Identities=35%  Similarity=0.577  Sum_probs=22.6

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ..-+.|.||.|||||+|.+.|+..+.
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            34577999999999999999999873

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.13  E-value=0.0013  Score=52.20  Aligned_cols=27  Identities=26%  Similarity=0.401  Sum_probs=23.3

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      +++|.++.|.||.|||||||.--++-.
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            678999999999999999998766543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.0015  Score=49.45  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .+.|+|.+|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999887764

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.12  E-value=0.0014  Score=49.24  Aligned_cols=23  Identities=43%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++|+|..|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            47899999999999999987754

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0017  Score=49.13  Aligned_cols=22  Identities=27%  Similarity=0.407  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++++|..|+|||||++.+.+-
T Consensus         9 Ki~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1           9 KILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4889999999999999988774

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.08  E-value=0.0024  Score=48.88  Aligned_cols=30  Identities=30%  Similarity=0.303  Sum_probs=23.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      .+.|+|..|+|||||++.+. ......|+-|
T Consensus         4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG   33 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKG   33 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHHSCCCCSS
T ss_pred             EEEEECCCCCCHHHHHHHHh-cCCCCCCeee
Confidence            57899999999999999994 3333346666

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.08  E-value=0.0017  Score=52.40  Aligned_cols=25  Identities=44%  Similarity=0.648  Sum_probs=22.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .-+.|.||.|||||+|.+.|+....
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEEECcCCCCHHHHHHHHhhccc
Confidence            3478999999999999999999873

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.08  E-value=0.0015  Score=51.44  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=25.1

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++|+++.|.|+.|+|||||+--++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999998887655

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0018  Score=51.05  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.|.||.|+||||++++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            5699999999999999998876

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.07  E-value=0.0016  Score=50.15  Aligned_cols=22  Identities=32%  Similarity=0.354  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 KivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           8 KLLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHhhC
Confidence            3889999999999999988763

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.02  E-value=0.002  Score=48.27  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999987764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.0021  Score=52.41  Aligned_cols=29  Identities=31%  Similarity=0.503  Sum_probs=24.0

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +....-+.|.||.|+|||+|.+.|++.+.
T Consensus        38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            33444578999999999999999999873

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.0019  Score=48.70  Aligned_cols=21  Identities=29%  Similarity=0.496  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|..|+|||||++.+.+
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999998765

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.0022  Score=48.09  Aligned_cols=22  Identities=27%  Similarity=0.531  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|+.|+|||||++.+.+-
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988763

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.98  E-value=0.002  Score=48.57  Aligned_cols=22  Identities=27%  Similarity=0.445  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 KI~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           7 KFLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3899999999999999988753

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0014  Score=56.88  Aligned_cols=23  Identities=26%  Similarity=0.343  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .|+|+|..|+|||||+|.|.|.-
T Consensus        58 ~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          58 NVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999999953

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0017  Score=48.98  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999988754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0023  Score=48.00  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++++|..|+|||||++.+.+-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999988753

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0023  Score=48.66  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999887653

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.88  E-value=0.0029  Score=49.93  Aligned_cols=30  Identities=23%  Similarity=0.162  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhcccCCCCC
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G  139 (255)
                      -.+.|+|.+|+|||||++.+.....  .|+-|
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~~--~pTiG   36 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILHV--VLTSG   36 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHHC--CCCCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCc--CCCCC
Confidence            3678999999999999988753321  26666

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.88  E-value=0.0031  Score=50.24  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.2

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      ...+.|.||.|+||||+++.|+..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            35788999999999999999999883

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.87  E-value=0.0066  Score=50.07  Aligned_cols=26  Identities=27%  Similarity=0.497  Sum_probs=22.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+-.+||+|...+|||||++.|++.-
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHST
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCCC
Confidence            34569999999999999999999864

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.85  E-value=0.0028  Score=47.66  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .+.++|..|+|||||++.+.+-
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5789999999999999988763

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.81  E-value=0.0026  Score=51.35  Aligned_cols=23  Identities=48%  Similarity=0.667  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+.|.||.|+|||+|.+.|+..+
T Consensus        44 giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEecCCCCChhHHHHHHHHHc
Confidence            37899999999999999999876

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0027  Score=49.90  Aligned_cols=22  Identities=36%  Similarity=0.727  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +-|.||.|+||||++++|+..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6699999999999999999876

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.004  Score=47.14  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=23.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhcccCCCCCc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~~~~p~~G~  140 (255)
                      .+.|+|..|+|||||++.+.....   |+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~---~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE---AGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS---CCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC---CCccE
Confidence            578999999999999998865543   77663

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.79  E-value=0.003  Score=47.38  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            489999999999999997765

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.76  E-value=0.0019  Score=48.97  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=21.6

Q ss_pred             cCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          104 VNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -++--.++|+|+.|+|||||++.+.+-
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcC
Confidence            334456889999999999999987543

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0032  Score=47.07  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5789999999999999987653

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.72  E-value=0.0025  Score=50.70  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.|.||.|+||||+.+.++-.+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999999876

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.72  E-value=0.0029  Score=50.20  Aligned_cols=23  Identities=26%  Similarity=0.366  Sum_probs=20.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++||.|+-||||||..+.|...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            37999999999999999999654

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0034  Score=47.70  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++++|..|+|||||++.+.+-.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999877643

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.69  E-value=0.0034  Score=47.06  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .+.|+|..|+|||||++.+.+
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            688999999999999998765

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.64  E-value=0.0033  Score=47.95  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            489999999999999988765

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0016  Score=49.02  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|+.|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            588999999999999987654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.0021  Score=48.49  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=9.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .++|+|..|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           8 KLLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0046  Score=50.04  Aligned_cols=32  Identities=31%  Similarity=0.496  Sum_probs=24.9

Q ss_pred             cccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        98 ~~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ....+..++|  +-|.||.|+|||+|++.++...
T Consensus        31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~   62 (258)
T d1e32a2          31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANET   62 (258)
T ss_dssp             HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HhCCCCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence            3333444455  7799999999999999999976

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.56  E-value=0.0064  Score=51.80  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=27.6

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .++++..+.+.||.|+|||||.+.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            567888999999999999999999999984

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.53  E-value=0.0027  Score=50.95  Aligned_cols=23  Identities=48%  Similarity=0.668  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            45667999999999999999876

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0037  Score=47.44  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      .+.|+|..|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999986655

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.50  E-value=0.0027  Score=47.73  Aligned_cols=22  Identities=23%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~G  129 (255)
                      -.+.|+|++|+|||||++.+.+
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999998764

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.44  E-value=0.004  Score=54.60  Aligned_cols=24  Identities=29%  Similarity=0.563  Sum_probs=21.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      =+.++||.|||||-|.|.|++++.
T Consensus        51 NILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          51 NILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             cEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999999874

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.44  E-value=0.0038  Score=49.37  Aligned_cols=24  Identities=21%  Similarity=0.333  Sum_probs=22.3

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+++|=|+-||||||+++.|.-.+
T Consensus         3 k~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           3 RRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHH
Confidence            589999999999999999999877

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0043  Score=47.49  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      .++|+|..|+|||||++.+.+-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            5889999999999999877653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.41  E-value=0.0077  Score=49.12  Aligned_cols=24  Identities=33%  Similarity=0.487  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -.+||||-.-+|||||++.|++.-
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999865

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.40  E-value=0.0026  Score=52.31  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+|+|+||-++||||||+.|.|..
T Consensus        33 ~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          33 VVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEECCCCCCHHHHHHHHcCCC
Confidence            589999999999999999998854

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.32  E-value=0.0058  Score=52.74  Aligned_cols=27  Identities=30%  Similarity=0.468  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.-++.|.||.||||||+|..+...+
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~  182 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQEL  182 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhh
Confidence            456689999999999999999999887

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.13  E-value=0.0087  Score=45.32  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.|+|..|+|||||++.+..-.
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~   26 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIH   26 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            57899999999999999886554

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.05  E-value=0.0074  Score=46.08  Aligned_cols=23  Identities=39%  Similarity=0.398  Sum_probs=19.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~  128 (255)
                      .|.=+.|.|++|+|||||.-.+.
T Consensus        13 ~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          13 YGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHH
Confidence            47778999999999999875543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.02  E-value=0.0056  Score=47.10  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +||+|.-.+|||||++.|+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999865

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.96  E-value=0.0066  Score=49.72  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=27.8

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      |.=+.+-+|+.++|+|+.|+|||||+..|+-..
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            444678899999999999999999988777653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=94.92  E-value=0.0077  Score=46.03  Aligned_cols=28  Identities=32%  Similarity=0.328  Sum_probs=21.3

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHH
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEV  127 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L  127 (255)
                      ..-+.+ .|.=+.|.|++|+|||||.-.+
T Consensus         8 ~~~v~~-~g~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2           8 GVLLEV-FGVGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEE-CCEEEEEEcCCCCCHHHHHHHH
Confidence            333444 5778899999999999997554

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.87  E-value=0.0076  Score=49.00  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=25.7

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      -++.|.++-|.||+|||||||+-.++....
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            467899999999999999999877777663

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.86  E-value=0.0044  Score=51.81  Aligned_cols=25  Identities=28%  Similarity=0.250  Sum_probs=22.4

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .-+.|+|+.|+|||||+|.++++++
T Consensus        29 h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          29 GGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             CCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CeEEEECCCCccHHHHHHHHHHhCC
Confidence            3578999999999999999999984

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.77  E-value=0.0055  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.442  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .|||+|..-+|||||++.|+|.-
T Consensus         2 ~v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           2 EIGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEEECTTSSHHHHHHHHHC--
T ss_pred             cEeEECCCCCCHHHHHHHHHCCC
Confidence            48999999999999999999864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.64  E-value=0.011  Score=48.22  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      ...+++|.|.-|.|||||.+.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999988754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.53  E-value=0.0077  Score=47.57  Aligned_cols=21  Identities=38%  Similarity=0.547  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      ++.|.|.=|||||||++-+..
T Consensus         5 v~iitGFLGaGKTTll~~lL~   25 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILN   25 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHH
T ss_pred             EEEEeeCCCCCHHHHHHHHHh
Confidence            678999999999999988765

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=94.52  E-value=0.0074  Score=49.69  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++++|.-+||||||++.|+|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999954

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.51  E-value=0.011  Score=45.92  Aligned_cols=22  Identities=36%  Similarity=0.439  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +||+|.-++|||||+..|....
T Consensus         6 i~iiGhvd~GKSTL~~~Ll~~~   27 (204)
T d2c78a3           6 VGTIGHVDHGKTTLTAALTYVA   27 (204)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHh
Confidence            8999999999999999997543

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.41  E-value=0.012  Score=44.61  Aligned_cols=22  Identities=36%  Similarity=0.350  Sum_probs=18.6

Q ss_pred             CCcEEEEECCCCCcHHHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEV  127 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L  127 (255)
                      .|.=+.|.|++|+|||||.-.+
T Consensus        14 ~g~gvli~G~sg~GKS~la~~l   35 (169)
T d1ko7a2          14 YGVGVLITGDSGIGKSETALEL   35 (169)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHH
Confidence            5778899999999999987443

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.39  E-value=0.014  Score=47.59  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=24.9

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -++.|.++-|.||+|+|||||+-.++...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            57899999999999999999976666554

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.35  E-value=0.008  Score=49.24  Aligned_cols=23  Identities=30%  Similarity=0.430  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .++++|.-.||||||++.|+|.-
T Consensus        28 ~ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          28 QIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             eEEEEcCCCCCHHHHHHHHhCCC
Confidence            36799999999999999999953

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.25  E-value=0.015  Score=45.25  Aligned_cols=24  Identities=25%  Similarity=0.454  Sum_probs=21.6

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..+.|.||.|+||||+.+.++..+
T Consensus        25 h~lLl~Gp~G~GKtt~a~~~a~~l   48 (207)
T d1a5ta2          25 HALLIQALPGMGDDALIYALSRYL   48 (207)
T ss_dssp             SEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHHhc
Confidence            347899999999999999999887

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.24  E-value=0.012  Score=47.87  Aligned_cols=22  Identities=36%  Similarity=0.664  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -++|+|+.|+|||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            3799999999999999998543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=94.03  E-value=0.014  Score=47.55  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      -++.|.++-|.||+|||||||+-.++...+
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            467899999999999999999988888764

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.017  Score=45.67  Aligned_cols=24  Identities=25%  Similarity=0.475  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+-|.||+|+||||+.++++..+.
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhc
Confidence            467889999999999999998774

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.79  E-value=0.015  Score=47.50  Aligned_cols=21  Identities=29%  Similarity=0.446  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~G  129 (255)
                      -+||+|..|||||||+..|.-
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~   28 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILY   28 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            479999999999999998853

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=93.73  E-value=0.015  Score=45.02  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+||+|.-.+|||||++.|+|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48999999999999999998865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.55  E-value=0.024  Score=43.75  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=20.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +||+|.-.+|||||++.|.+..
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7999999999999999998875

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=93.54  E-value=0.013  Score=47.91  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=26.9

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHHH
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      |.=+.|-+|+.++|+|+.|+|||+|+..+.-.
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHT
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHHHhh
Confidence            45578889999999999999999999865443

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.19  E-value=0.024  Score=44.27  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +-|.||.|+|||-|++.++-...
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999988763

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.02  E-value=0.032  Score=46.49  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=22.9

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..++| ++.+.||.|+|||.|.+.|++.+
T Consensus       120 ~~~~g-~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         120 RYASG-MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             ccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence            34444 55668999999999999999987

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.97  E-value=0.023  Score=48.63  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=18.2

Q ss_pred             cEEEEECCCCCcHHHHHHHHHH
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~G  129 (255)
                      ..+.|+|++|||||++++.|.-
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHH
Confidence            4579999999999999975543

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.91  E-value=0.036  Score=45.98  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.3

Q ss_pred             CcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-.+.++||+|+|||.|.+.|+-.+
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHh
Confidence            3467899999999999999999987

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.89  E-value=0.022  Score=47.72  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.|=|+-||||||+++.|...+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            58899999999999999997655

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.84  E-value=0.018  Score=47.18  Aligned_cols=31  Identities=13%  Similarity=0.159  Sum_probs=26.1

Q ss_pred             ccccccCCCcEEEEECCCCCcHHHHHHHHHH
Q 025293           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus        99 ~isl~i~~GeivgLiGpNGsGKSTLLk~L~G  129 (255)
                      |.-+.+-+|++++|+|+.|+|||||+.-++.
T Consensus        60 D~l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          60 DSLVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             ecccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            4557888999999999999999999865543

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=92.67  E-value=0.034  Score=47.11  Aligned_cols=28  Identities=25%  Similarity=0.596  Sum_probs=22.8

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +++++- +-++||.|+|||-|.|.|+.++
T Consensus        65 ~~p~~n-iLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          65 ELSKSN-ILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             TCCCCC-EEEECCTTSSHHHHHHHHHHHT
T ss_pred             cCCCcc-eeeeCCCCccHHHHHHHHHhhc
Confidence            345555 4578999999999999999876

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.55  E-value=0.035  Score=46.47  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|.|=|+-|+||||+++.|...+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            578999999999999999998773

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.40  E-value=0.047  Score=44.18  Aligned_cols=29  Identities=21%  Similarity=0.460  Sum_probs=23.1

Q ss_pred             cccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.+.++ +.+|+|||||||||+|.+|.-.+
T Consensus        20 i~f~~~-lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          20 IGFSDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EECCSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EeCCCC-eEEEECCCCCcHHHHHHHHHHHh
Confidence            334343 88999999999999999996654

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.31  E-value=0.047  Score=42.08  Aligned_cols=25  Identities=32%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .-+.|+|+.|.|||++..-|+-.+.
T Consensus        44 ~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          44 NNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEecCCcccHHHHHHHHHHHH
Confidence            3578999999999999999988763

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=92.20  E-value=0.032  Score=46.69  Aligned_cols=24  Identities=33%  Similarity=0.429  Sum_probs=21.7

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      -+|.|=|+=||||||+++.|.-.+
T Consensus         6 lrI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           6 LRIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEEESSSSCTTHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHH
Confidence            358899999999999999999877

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.14  E-value=0.048  Score=44.19  Aligned_cols=24  Identities=33%  Similarity=0.484  Sum_probs=21.0

Q ss_pred             cEEEEECCCCCcHHHHHHHHHHHh
Q 025293          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       108 eivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .-+.|+||.|+|||+++.-++-.+
T Consensus        40 ~n~lLVG~~GvGKTalv~~la~ri   63 (268)
T d1r6bx2          40 NNPLLVGESGVGKTAIAEGLAWRI   63 (268)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEECCCCCcHHHHHHHHHHHH
Confidence            456799999999999999998866

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.07  E-value=0.038  Score=43.29  Aligned_cols=20  Identities=30%  Similarity=0.380  Sum_probs=18.1

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025293          110 VGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~G  129 (255)
                      +||+|.-++|||||+..|..
T Consensus         6 i~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           6 LIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCCHHHHHHHHHH
Confidence            89999999999999988854

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.94  E-value=0.04  Score=45.52  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.6

Q ss_pred             CCCcEEEEECCCCCcHHHHH
Q 025293          105 NVKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLL  124 (255)
                      +.|++..+.|.+|+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            36899999999999999964

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.36  E-value=0.071  Score=41.79  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++++|.-.+|||||+..|+...
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6999999999999999997654

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=91.34  E-value=0.046  Score=45.30  Aligned_cols=19  Identities=32%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             CCcEEEEECCCCCcHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLL  124 (255)
                      .|++..+.|.+|+|||||-
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4889999999999999963

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=91.00  E-value=0.058  Score=44.73  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=17.5

Q ss_pred             CCcEEEEECCCCCcHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLL  124 (255)
                      .|++..+.|.||+|||||-
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            6889999999999999986

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.97  E-value=0.078  Score=37.54  Aligned_cols=27  Identities=7%  Similarity=0.124  Sum_probs=23.9

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ++|-.+-+.|-+||||||+.+.|.--+
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l   30 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTF   30 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHH
Confidence            578899999999999999999996655

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.47  E-value=0.1  Score=42.05  Aligned_cols=29  Identities=21%  Similarity=0.477  Sum_probs=25.5

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ..++--.+.|.||-++|||||+++|..++
T Consensus       100 ~~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         100 KFGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             CSTTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34566788999999999999999999988

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=90.08  E-value=0.074  Score=37.20  Aligned_cols=21  Identities=29%  Similarity=0.243  Sum_probs=18.0

Q ss_pred             cCCCcEEEEECCCCCcHHHHH
Q 025293          104 VNVKHIVGLAGPPGAGKSTLA  124 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLL  124 (255)
                      +++|+.+.|.+|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999544

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.88  E-value=0.12  Score=39.62  Aligned_cols=27  Identities=7%  Similarity=-0.006  Sum_probs=23.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+--+.|.||+|+||||+.+.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            466788999999999999999998774

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=89.66  E-value=0.063  Score=43.16  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=16.8

Q ss_pred             EEEEECCCCCcHHHH-HHHHHHHh
Q 025293          109 IVGLAGPPGAGKSTL-AAEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTL-Lk~L~Gll  131 (255)
                      -+.|+|+-||||||. +..++-++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHH
Confidence            467999999999975 45454444

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=89.22  E-value=0.075  Score=43.17  Aligned_cols=23  Identities=13%  Similarity=0.245  Sum_probs=16.2

Q ss_pred             EEEEECCCCCcHHHHH-HHHHHHh
Q 025293          109 IVGLAGPPGAGKSTLA-AEVVRRI  131 (255)
Q Consensus       109 ivgLiGpNGsGKSTLL-k~L~Gll  131 (255)
                      .+.|.|+-||||||.| ..++-++
T Consensus        26 ~~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          26 PLLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEecCCccHHHHHHHHHHHHH
Confidence            3668899999999765 4444444

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.13  E-value=0.13  Score=39.72  Aligned_cols=30  Identities=23%  Similarity=0.390  Sum_probs=26.6

Q ss_pred             ccCCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+++--.+.|.||.++|||++...|+.++.
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            356778999999999999999999999984

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.00  E-value=0.11  Score=41.22  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHH
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRR  130 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gl  130 (255)
                      -++|+|.-++|||||+..|+-.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            3799999999999999888643

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=88.98  E-value=0.15  Score=42.85  Aligned_cols=22  Identities=36%  Similarity=0.705  Sum_probs=18.4

Q ss_pred             CcEEEEECCCCCcHHHHHHHHH
Q 025293          107 KHIVGLAGPPGAGKSTLAAEVV  128 (255)
Q Consensus       107 GeivgLiGpNGsGKSTLLk~L~  128 (255)
                      +.++.|.||-|+||||++..+.
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            5699999999999999885443

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=88.79  E-value=0.12  Score=41.58  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.7

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+-.++|+|-.-+|||||+|.|.|..
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            45569999999999999999999854

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.79  E-value=0.085  Score=44.16  Aligned_cols=20  Identities=30%  Similarity=0.428  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025293          110 VGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~G  129 (255)
                      +||+|.-|+|||||+..|.-
T Consensus        20 I~iiGhvd~GKTTL~d~Ll~   39 (341)
T d1n0ua2          20 MSVIAHVDHGKSTLTDSLVQ   39 (341)
T ss_dssp             EEEECCGGGTHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            89999999999999999863

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=88.40  E-value=0.17  Score=46.31  Aligned_cols=27  Identities=22%  Similarity=0.442  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.+.|.|.|.+|||||+-.|.|...+
T Consensus        84 ~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          84 QENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998766

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=88.40  E-value=0.087  Score=41.87  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025293          110 VGLAGPPGAGKSTLAAEVVR  129 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~G  129 (255)
                      ++|+|.-++|||||+..|..
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHH
Confidence            89999999999999998854

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=88.37  E-value=0.17  Score=46.50  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=25.0

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.+.|.|.|.+|||||+-.|.|...+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999988764

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=88.25  E-value=0.11  Score=41.74  Aligned_cols=28  Identities=36%  Similarity=0.418  Sum_probs=21.7

Q ss_pred             cCCCcEEEEECCCCCcHHH--HHHHHHHHh
Q 025293          104 VNVKHIVGLAGPPGAGKST--LAAEVVRRI  131 (255)
Q Consensus       104 i~~GeivgLiGpNGsGKST--LLk~L~Gll  131 (255)
                      +.+|+.+.|.+|.|||||+  |..++....
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999997  335555444

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=87.52  E-value=0.2  Score=36.19  Aligned_cols=25  Identities=32%  Similarity=0.293  Sum_probs=20.8

Q ss_pred             CcEEEEECCCCCcHHH-HHHHHHHHh
Q 025293          107 KHIVGLAGPPGAGKST-LAAEVVRRI  131 (255)
Q Consensus       107 GeivgLiGpNGsGKST-LLk~L~Gll  131 (255)
                      |.+..|+||=.||||| |++.+....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            6788899999999999 777776554

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=87.48  E-value=0.2  Score=45.89  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      .+.+.|.|.|.+|||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            467899999999999999999998776

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=86.96  E-value=0.17  Score=40.07  Aligned_cols=27  Identities=22%  Similarity=0.271  Sum_probs=22.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      ....-|.|.|+.|+||+++.+.|...-
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            345668899999999999999997654

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.55  E-value=0.17  Score=35.71  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=16.1

Q ss_pred             CCcEEEEECCCCCcHHHHHH
Q 025293          106 VKHIVGLAGPPGAGKSTLAA  125 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk  125 (255)
                      .-++..|.+|-|||||+++-
T Consensus         7 ~~~~~ll~apTGsGKT~~~~   26 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVP   26 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHH
Confidence            34667789999999998763

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=86.43  E-value=0.17  Score=43.05  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHHh
Q 025293          110 VGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       110 vgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +.|||+.|+|||+++.-|+-.+
T Consensus        46 ~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          46 PVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999998777654

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=86.40  E-value=0.23  Score=46.11  Aligned_cols=28  Identities=21%  Similarity=0.382  Sum_probs=24.6

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.+.|.|.|.+|||||+-.|.|...+.
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL~  148 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYFA  148 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999998888773

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=85.65  E-value=0.25  Score=45.83  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.5

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.+.|.|.|.+|||||.-.|.|...+.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4579999999999999999888888764

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=85.09  E-value=0.32  Score=44.67  Aligned_cols=28  Identities=25%  Similarity=0.357  Sum_probs=24.9

Q ss_pred             CCCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      .+.+.+.|.|.+|||||+-.|.+...+.
T Consensus        92 ~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          92 ERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            5678999999999999999999988763

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.69  E-value=0.3  Score=34.87  Aligned_cols=26  Identities=38%  Similarity=0.368  Sum_probs=20.0

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHh
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll  131 (255)
                      +|.+..|+||=.|||||-|=..+-..
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            58899999999999999654433333

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=82.35  E-value=0.63  Score=34.77  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=22.3

Q ss_pred             CCcEEEEECCCCCcHHHHHHHHHHHhc
Q 025293          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       106 ~GeivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      |+.+|||.|-|  ||||.-.+|.-++.
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~   25 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILS   25 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHH
Confidence            46799999999  59999999999994

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.24  E-value=0.47  Score=35.57  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=21.5

Q ss_pred             cEEEEECCC-CCcHHHHHHHHHHHhc
Q 025293          108 HIVGLAGPP-GAGKSTLAAEVVRRIN  132 (255)
Q Consensus       108 eivgLiGpN-GsGKSTLLk~L~Gll~  132 (255)
                      .++-|.|-+ |+||||+.-.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            467799997 9999999998888883

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.07  E-value=0.56  Score=35.67  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=22.3

Q ss_pred             CcEEEEE-CCCCCcHHHHHHHHHHHhc
Q 025293          107 KHIVGLA-GPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       107 GeivgLi-GpNGsGKSTLLk~L~Gll~  132 (255)
                      |.+|++. +.-|+||||+.--|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            5788999 6789999999999988883

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=81.31  E-value=0.48  Score=37.25  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHHhc
Q 025293          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (255)
Q Consensus       109 ivgLiGpNGsGKSTLLk~L~Gll~  132 (255)
                      +|+|.|.=|+||||+.-.|+..+.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHH
Confidence            688999999999999999988883