Citrus Sinensis ID: 025298

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-----
Protein Sequence
MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHccccccccccEEEEEEEEcccccccccccccccccccccccccEEEEcccccccccccccccEEEEEcccccccccccccEEEEEEEcccccccccccccccccccccccccccHHHHHHHcHHcccEEcEEEEEccccccccEEEEEcccccEEEEEEEEEcccccEEEEEEEcccccEEEcccccccEEEEccccccccEEEEEEEccccEEEEccccccccccccEEEccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccHHHHHHHHHccccccccEEEEEEcccccccccccccEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccEEEEEcccccEEEEEEEEccccccEEEEEEEccccccccccccccccccccccEcccEEEEEEEEccccEEEEcccccccccEcEEEcccccc
Coil and Loop (DISEMBL)
MAKTLLTSAILIQLCCLSvsikafspsgwtqahatfyggsdasgtmggacgygnlystgYGISTAALSTAlfndgascgqcyrimcdyksdtrwcikgtsvtitatnfcppnfalpsdnggwcnpprqhfdmaypawqkigiyrggivpvlyqrvpckkpggvrftingRDYFELVLISNvagagsiksayIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFkvtttdgetrifpnvvpsnwhfgqsfaSSIQF
Flexible Loop (DISEMBL)
MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFpnvvpsnwhfgqsfassiqf
Low Complexity Region (SEG)
MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF
Disordered region (IsUnstruct)
****LLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQ********
Disordered Region (DISOPRED)
***TLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF
Disordered Region (DISEMBL)
MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF
Disordered Region (DISPRO)
MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASS***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	255	2.2.26 [Sep-21-2011]
Q7XWU8	261	Expansin-A1 OS=Oryza sati	yes	no	0.960	0.938	0.755	1e-109
Q9LNU3	252	Expansin-A11 OS=Arabidops	yes	no	0.929	0.940	0.767	1e-109
Q4PR39	263	Expansin-A29 OS=Oryza sat	no	no	0.949	0.920	0.696	1e-103
Q4PR52	262	Expansin-A13 OS=Oryza sat	no	no	0.909	0.885	0.733	1e-101
Q4PR43	267	Expansin-A23 OS=Oryza sat	no	no	0.905	0.865	0.715	2e-98
Q4PR42	278	Expansin-A24 OS=Oryza sat	no	no	0.905	0.830	0.719	6e-98
Q4PR44	280	Expansin-A22 OS=Oryza sat	no	no	0.933	0.85	0.702	1e-97
Q4PR50	260	Expansin-A15 OS=Oryza sat	no	no	1.0	0.980	0.652	7e-96
Q7G6Z2	250	Expansin-A12 OS=Oryza sat	no	no	0.866	0.884	0.720	2e-95
Q9ZSI1	255	Putative expansin-A17 OS=	no	no	0.976	0.976	0.660	4e-95

>sp|Q7XWU8|EXPA1_ORYSJ Expansin-A1 OS=Oryza sativa subsp. japonica GN=EXPA1 PE=2 SV=2

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 185/245 (75%), Positives = 209/245 (85%)

Query: 11  LIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTA 70
           L+  C L     +F+ SGW +A ATFYGGSDASGTMGGACGYG+LYSTGYG +TAALST 
Sbjct: 16  LLATCLLWNEAASFTASGWNKAFATFYGGSDASGTMGGACGYGDLYSTGYGTNTAALSTV 75

Query: 71  LFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHF 130
           LFNDGASCGQCYRIMCDY++D R+CI GTSVTITATN CPPN+ALP+D GGWCNPPRQHF
Sbjct: 76  LFNDGASCGQCYRIMCDYQADRRFCISGTSVTITATNLCPPNYALPNDAGGWCNPPRQHF 135

Query: 131 DMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSA 190
           DMA PAW KIG+Y GGIVPV+YQRVPC K GGVRFTINGRDYFELVL+SNV G GSI+S 
Sbjct: 136 DMAEPAWLKIGVYVGGIVPVMYQRVPCAKQGGVRFTINGRDYFELVLVSNVGGVGSIQSV 195

Query: 191 YIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFA 250
            IKGS T WMAMSRNWG NWQSNAYL+GQSLSFKVT++DG+T  F +V P+ W FGQ+F+
Sbjct: 196 SIKGSRTGWMAMSRNWGVNWQSNAYLDGQSLSFKVTSSDGQTLTFLDVAPAGWTFGQTFS 255

Query: 251 SSIQF 255
           +S QF
Sbjct: 256 TSQQF 260

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LNU3|EXP11_ARATH Expansin-A11 OS=Arabidopsis thaliana GN=EXPA11 PE=2 SV=1

 Score =  394 bits (1011), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 182/237 (76%), Positives = 207/237 (87%)

Query: 19  VSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASC 78
           +++ AF PSG T  HATFYGGSDASGTMGGACGYG+LYS GYG  TAALSTALFNDGASC
Sbjct: 16  IAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGYGTMTAALSTALFNDGASC 75

Query: 79  GQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQ 138
           G+CYRI CD+ +D+RWC+KG SV ITATNFCPPNFALP++NGGWCNPP +HFDMA PAW+
Sbjct: 76  GECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNGGWCNPPLKHFDMAQPAWE 135

Query: 139 KIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTN 198
           KIGIYRGGIVPV++QRV C K GGVRF INGRDYFELV I NV GAGSIKS  IKGS T 
Sbjct: 136 KIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQNVGGAGSIKSVSIKGSKTG 195

Query: 199 WMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
           W+AMSRNWGANWQSNAYL+GQ+LSF +TTTDG TR+F NVVPS+W FGQ ++S++QF
Sbjct: 196 WLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVPSSWSFGQIYSSNVQF 252

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

>sp|Q4PR39|EXP29_ORYSJ Expansin-A29 OS=Oryza sativa subsp. japonica GN=EXPA29 PE=2 SV=2

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 170/244 (69%), Positives = 205/244 (84%), Gaps = 2/244 (0%)

Query: 14  LCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFN 73
           L   S +++AF+ SGW++  ATFYGGSDASGTMGGACGYGNLY+ GYG  TAALSTALF+
Sbjct: 19  LAAASTTVEAFAASGWSKGTATFYGGSDASGTMGGACGYGNLYTQGYGTRTAALSTALFD 78

Query: 74  DGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMA 133
           DGASCGQCY + CD ++D RWC  G SVT+TATNFCPPN+ALPSD+GGWCNPPR HFDMA
Sbjct: 79  DGASCGQCYALTCDARADPRWCRAGASVTVTATNFCPPNYALPSDDGGWCNPPRPHFDMA 138

Query: 134 YPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIK 193
            PAW++IG+YRGGIVPV ++RVPC++ GGVRFT+ GRDYFELVL++NVA AGS++S  ++
Sbjct: 139 QPAWERIGVYRGGIVPVAFRRVPCRRRGGVRFTVAGRDYFELVLVTNVAAAGSVRSMEVR 198

Query: 194 GSS--TNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFAS 251
           GS     WMAMSRNWGANWQS AYL+GQ LSF+VT TDG+T +F  VVP +W FGQ+FAS
Sbjct: 199 GSRRGAGWMAMSRNWGANWQSLAYLDGQGLSFRVTATDGQTIVFAGVVPPSWRFGQTFAS 258

Query: 252 SIQF 255
           + QF
Sbjct: 259 TQQF 262

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4PR52|EXP13_ORYSJ Expansin-A13 OS=Oryza sativa subsp. japonica GN=EXPA13 PE=2 SV=2

 Score =  369 bits (948), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 171/233 (73%), Positives = 196/233 (84%), Gaps = 1/233 (0%)

Query: 24  FSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYR 83
             PSGW +AHATFYGG+DASGTMGGACGYGNLY+ GYG  TAALSTALFNDG +CGQCY+
Sbjct: 29  LEPSGWVRAHATFYGGADASGTMGGACGYGNLYAQGYGTRTAALSTALFNDGLACGQCYK 88

Query: 84  IMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIY 143
           ++CD K+D  WC  G SVTITATNFCPPN+ LPSD+GGWCNPPR HFDMA PAW+KIGIY
Sbjct: 89  LVCDRKTDRTWCKPGVSVTITATNFCPPNWDLPSDSGGWCNPPRPHFDMAQPAWEKIGIY 148

Query: 144 RGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGS-STNWMAM 202
           RGGI+PV+YQRVPC K GGVRFTING DYF+LVL++NV  AGSIK+  +KGS S +WMAM
Sbjct: 149 RGGIIPVIYQRVPCMKKGGVRFTINGHDYFQLVLLTNVGAAGSIKAMDVKGSKSPDWMAM 208

Query: 203 SRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
           + NWGA W S AYL GQ LSF+VT TDG+T +FPNVV   W FGQ+FAS+IQF
Sbjct: 209 AHNWGAQWHSLAYLTGQGLSFRVTITDGQTLVFPNVVRPGWRFGQTFASNIQF 261

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4PR43|EXP23_ORYSJ Expansin-A23 OS=Oryza sativa subsp. japonica GN=EXPA23.1 PE=2 SV=2

 Score =  358 bits (919), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 166/232 (71%), Positives = 191/232 (82%), Gaps = 1/232 (0%)

Query: 25  SPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRI 84
           +P+ W +AHATFYGG+DASGTMGGACGYGNLYS GYG   AALSTALFNDGASCGQCY+I
Sbjct: 35  APTQWQKAHATFYGGADASGTMGGACGYGNLYSQGYGTRNAALSTALFNDGASCGQCYKI 94

Query: 85  MCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYR 144
            CD K   +WC  G +VTITATNFCPPN+ LPSDNGGWCNPPR HFDMA PAW+KIG+Y 
Sbjct: 95  ACDRKRAPQWCKPGVTVTITATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGVYS 154

Query: 145 GGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSST-NWMAMS 203
            GI+PV+YQRVPC K GG+RFTING DYF+LVL++NVA AGSIKS  + GS+T +WM M+
Sbjct: 155 AGIIPVIYQRVPCVKKGGLRFTINGHDYFQLVLVTNVAAAGSIKSMEVMGSNTADWMPMA 214

Query: 204 RNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
           RNWGA W S AYL GQ LSF+VT TD +T +F NVVP  W FGQ+FAS +QF
Sbjct: 215 RNWGAQWHSLAYLTGQGLSFRVTNTDDQTLVFTNVVPPGWKFGQTFASKLQF 266

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4PR42|EXP24_ORYSJ Expansin-A24 OS=Oryza sativa subsp. japonica GN=EXPA24 PE=2 SV=2

 Score =  357 bits (915), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 167/232 (71%), Positives = 189/232 (81%), Gaps = 1/232 (0%)

Query: 25  SPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRI 84
           +P  W +AHATFYGG+DASGTMGGACGY +LYS GYG   AALSTALFNDGASCGQCY+I
Sbjct: 46  TPPVWLKAHATFYGGADASGTMGGACGYVDLYSQGYGTRNAALSTALFNDGASCGQCYKI 105

Query: 85  MCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYR 144
            CD K   +WC  G +VT+TATNFCPPN+ LPSDNGGWCNPPR HFDMA PAW+KIGIYR
Sbjct: 106 ACDRKRAPQWCKPGVTVTVTATNFCPPNWNLPSDNGGWCNPPRPHFDMAQPAWEKIGIYR 165

Query: 145 GGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGS-STNWMAMS 203
            GI+PV+YQRVPC K GGVRFTING DYF LVL++NVA  GSIKS  I GS ST+WM M 
Sbjct: 166 AGIIPVMYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGSIKSMDIMGSNSTDWMPMV 225

Query: 204 RNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
           RNWGANW S +YL GQ LSF+VT  DG+T +F N+VPS W FGQ+FAS +QF
Sbjct: 226 RNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQF 277

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4PR44|EXP22_ORYSJ Expansin-A22 OS=Oryza sativa subsp. japonica GN=EXPA22 PE=2 SV=2

 Score =  356 bits (913), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 168/239 (70%), Positives = 191/239 (79%), Gaps = 1/239 (0%)

Query: 18  SVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGAS 77
           S S    +P  W +AHATFYGG+DASGTMGGACGYG+LYS GYG   AALSTALFNDGAS
Sbjct: 41  SSSTDDAAPPVWLKAHATFYGGADASGTMGGACGYGDLYSQGYGTRNAALSTALFNDGAS 100

Query: 78  CGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAW 137
           CGQCY+I CD K   +WC  G +VTITATNFCPPN+ LPSDNGGWCNPPR HFDMA PAW
Sbjct: 101 CGQCYKIACDRKRAPQWCRPGVTVTITATNFCPPNWDLPSDNGGWCNPPRPHFDMAQPAW 160

Query: 138 QKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGS-S 196
           +KIGIYR GI+PV+YQRVPC K GGVRFTING DYF LVL++NVA  G IKS  + GS S
Sbjct: 161 EKIGIYRAGIIPVIYQRVPCVKKGGVRFTINGHDYFNLVLVTNVATTGLIKSMDVMGSNS 220

Query: 197 TNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
           T+W+ M RNWGANW S +YL GQ LSF+VT  DG+T +F N+VPS W FGQ+FAS +QF
Sbjct: 221 TDWLPMVRNWGANWHSLSYLTGQMLSFRVTNMDGQTLVFRNIVPSGWKFGQTFASKLQF 279

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q4PR50|EXP15_ORYSJ Expansin-A15 OS=Oryza sativa subsp. japonica GN=EXPA15 PE=2 SV=2

 Score =  350 bits (897), Expect = 7e-96,   Method: Compositional matrix adjust.
 Identities = 167/256 (65%), Positives = 211/256 (82%), Gaps = 1/256 (0%)

Query: 1   MAKTLLTSAIL-IQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTG 59
           M K   T +IL + +   + S+ A + +GW+   ATFYGGSDASGTMGGACGYGNLY +G
Sbjct: 3   MWKKKKTPSILPLVVVIAAASLIAPTTAGWSSGTATFYGGSDASGTMGGACGYGNLYWSG 62

Query: 60  YGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDN 119
           YG +TAALS+ALFNDGASCGQCY+I CD++++ RWC++G +VTIT TN CPPN+AL S++
Sbjct: 63  YGTNTAALSSALFNDGASCGQCYQIACDHQAEPRWCLQGRTVTITGTNLCPPNYALSSND 122

Query: 120 GGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLIS 179
           GGWCNPPR HFDMA PAW +IGIY+ GIVPVLYQRVPC K GGVRFT+ G +YFELVLIS
Sbjct: 123 GGWCNPPRTHFDMAEPAWLQIGIYKAGIVPVLYQRVPCVKQGGVRFTMGGFNYFELVLIS 182

Query: 180 NVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV 239
           NVAG+GSI+S ++KG +T+ M +SRNWGANWQS+A L GQ+L+F VT+T G+T +F N+V
Sbjct: 183 NVAGSGSIQSVWVKGPNTDRMPLSRNWGANWQSHAGLVGQTLTFGVTSTGGQTLVFQNIV 242

Query: 240 PSNWHFGQSFASSIQF 255
           P+ W FGQSF+S++QF
Sbjct: 243 PAWWKFGQSFSSNLQF 258

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7G6Z2|EXP12_ORYSJ Expansin-A12 OS=Oryza sativa subsp. japonica GN=EXPA12 PE=2 SV=1

 Score =  348 bits (893), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 160/222 (72%), Positives = 191/222 (86%), Gaps = 1/222 (0%)

Query: 34  ATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTR 93
           ATFYGGSDASGTMGGACGYGNLYSTGYG +TAALS+ALFNDGA+CG+CY+I CD +S+++
Sbjct: 29  ATFYGGSDASGTMGGACGYGNLYSTGYGTNTAALSSALFNDGAACGECYQITCD-QSNSK 87

Query: 94  WCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQ 153
           WC  GTSVTITATN CPP+++ PS++GGWCNPPRQHFDMA PAW++IG+YRGGIVPV +Q
Sbjct: 88  WCKAGTSVTITATNLCPPDYSKPSNDGGWCNPPRQHFDMAQPAWEQIGVYRGGIVPVNFQ 147

Query: 154 RVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSN 213
           RV C + GGVRFTING  YFELVLI+NV G GSIKS  IKG+ T W+ MSRNWGANWQ+N
Sbjct: 148 RVSCTRKGGVRFTINGNSYFELVLITNVGGPGSIKSVQIKGTKTGWVTMSRNWGANWQAN 207

Query: 214 AYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
            YLN Q++SF VT+T G+T +F +V PSNW FGQ+F S +QF
Sbjct: 208 NYLNNQAISFSVTSTAGKTLVFEDVAPSNWQFGQTFTSGVQF 249

May cause loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found. May be required for rapid internodal elongation in deepwater rice during submergence.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZSI1|EXP17_ARATH Putative expansin-A17 OS=Arabidopsis thaliana GN=EXPA17 PE=3 SV=1

 Score =  347 bits (890), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 167/253 (66%), Positives = 197/253 (77%), Gaps = 4/253 (1%)

Query: 4   TLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGIS 63
           +LL + I   +  + +S  +   +GW QAHATFYGGSDASGTMGGACGYGNLY+ GY  +
Sbjct: 6   SLLVAMIFSTMFFMKISSVS---AGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTN 62

Query: 64  TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWC 123
           TAALSTALFNDG SCG CY+I+CD     +WC+KG S+TITATNFCPPNFA  SDNGGWC
Sbjct: 63  TAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWC 122

Query: 124 NPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAG 183
           NPPR HFDMA PA+  I  Y+ GIVP+LY++V C++ GG+RFTINGR+YFELVLISNVAG
Sbjct: 123 NPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAG 182

Query: 184 AGSIKSAYIKGSSTN-WMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSN 242
            G I   +IKGS +N W  MSRNWGAN+QSN YLNGQSLSFKV  +DG  +   NVVPSN
Sbjct: 183 GGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSN 242

Query: 243 WHFGQSFASSIQF 255
           W FGQSF S++ F
Sbjct: 243 WRFGQSFKSNVNF 255

Causes loosening and extension of plant cell walls by disrupting non-covalent bonding between cellulose microfibrils and matrix glucans. No enzymatic activity has been found.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
255539046	256	Alpha-expansin 11 precursor, putative [R	1.0	0.996	0.820	1e-123
351725149	255	expansin precursor [Glycine max] gi|2746	1.0	1.0	0.796	1e-121
224085934	256	hypothetical protein POPTRDRAFT_818831 [	1.0	0.996	0.800	1e-120
224061967	256	hypothetical protein POPTRDRAFT_709919 [	1.0	0.996	0.796	1e-120
356614667	256	expansin [Chimonanthus praecox]	0.980	0.976	0.78	1e-118
225459728	256	PREDICTED: expansin-A11 [Vitis vinifera]	1.0	0.996	0.800	1e-118
357438557	255	Expansin [Medicago truncatula] gi|355478	1.0	1.0	0.788	1e-118
363807858	256	uncharacterized protein LOC100527629 pre	0.996	0.992	0.774	1e-116
356517959	255	PREDICTED: expansin-A11-like [Glycine ma	1.0	1.0	0.764	1e-115
350536957	257	expansin11 precursor [Solanum lycopersic	1.0	0.992	0.774	1e-114

>gi|255539046|ref|XP_002510588.1| Alpha-expansin 11 precursor, putative [Ricinus communis] gi|223551289|gb|EEF52775.1| Alpha-expansin 11 precursor, putative [Ricinus communis]

 Score =  446 bits (1147), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/256 (82%), Positives = 232/256 (90%), Gaps = 1/256 (0%)

Query: 1   MAKTLLTSAILIQ-LCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTG 59
           M K      IL+Q LC L++ + AFSPSGWT+AHATFYGGSDASGTMGGACGYGNLYSTG
Sbjct: 1   MVKLTFALPILLQFLCFLAIHVNAFSPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 60  YGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDN 119
           YG  TAALSTALFNDGASCGQCY+IMCDY++D RWCIKG+S+TITATNFCPPNFALP++N
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIMCDYQTDPRWCIKGSSITITATNFCPPNFALPNNN 120

Query: 120 GGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLIS 179
           GGWCNPP QHFDMA PAW+KIGIYRGGIVPV++QRVPCKK GGVRF+INGRDYFELVLIS
Sbjct: 121 GGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVMFQRVPCKKHGGVRFSINGRDYFELVLIS 180

Query: 180 NVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV 239
           NVAGAGSI+S  IKGS T WMAMSRNWGANWQSN+YLNGQSLSFK+TTTDG TR FPNVV
Sbjct: 181 NVAGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNSYLNGQSLSFKITTTDGATRFFPNVV 240

Query: 240 PSNWHFGQSFASSIQF 255
           PSNW FGQ+F+SS+QF
Sbjct: 241 PSNWAFGQTFSSSVQF 256

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725149|ref|NP_001237850.1| expansin precursor [Glycine max] gi|27464177|gb|AAO15998.1|AF516879_1 expansin [Glycine max]

 Score =  441 bits (1133), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 203/255 (79%), Positives = 230/255 (90%)

Query: 1   MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGY 60
           M K +L    LI LCC +++  AFSPSGWT AHATFYGGSDASGTMGGACGYGNLY+TGY
Sbjct: 1   MGKIMLVLGSLIGLCCFTITTYAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYATGY 60

Query: 61  GISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNG 120
           G  TAALSTALFNDGASCGQCY+I+CDYKSD+RWCIKG SVT+TATNFCPPNFALP++NG
Sbjct: 61  GTRTAALSTALFNDGASCGQCYKIICDYKSDSRWCIKGRSVTVTATNFCPPNFALPNNNG 120

Query: 121 GWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISN 180
           GWCNPP +HFDMA PAW+KIGIYRGGIVPVL+QRVPCKK GGVRF++NGRDYFELVLISN
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISN 180

Query: 181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVP 240
           V GAGSI+S +IKGS T WMAMSRNWG+NWQSNAYLNGQSLSF+VTTTDGETR+F ++VP
Sbjct: 181 VGGAGSIQSVFIKGSKTGWMAMSRNWGSNWQSNAYLNGQSLSFRVTTTDGETRVFQDIVP 240

Query: 241 SNWHFGQSFASSIQF 255
            +W FGQ+F+S +QF
Sbjct: 241 VSWTFGQTFSSPVQF 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085934|ref|XP_002307745.1| hypothetical protein POPTRDRAFT_818831 [Populus trichocarpa] gi|222857194|gb|EEE94741.1| hypothetical protein POPTRDRAFT_818831 [Populus trichocarpa]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 205/256 (80%), Positives = 231/256 (90%), Gaps = 1/256 (0%)

Query: 1   MAKTLLTSAILIQLCC-LSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTG 59
           M K LLT AIL+Q C  L++++ AF+PSGW + HATFYGGSDASGTMGGACGYGNLYSTG
Sbjct: 1   MGKFLLTFAILLQFCSYLAINVNAFAPSGWRKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 60  YGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDN 119
           YG  TAALSTALFNDGASCG+CYRIMCD+++D RWCIKG SVTITATNFCPPN+ALP++N
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDPRWCIKGKSVTITATNFCPPNYALPNNN 120

Query: 120 GGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLIS 179
           GGWCNPP QHFDMA PAW+KIGIYRGGIVPVL+QRVPCKK GGVRFTINGR+YFELVLIS
Sbjct: 121 GGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRNYFELVLIS 180

Query: 180 NVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV 239
           NVAGAGSI+S  IKGS T WMAMSRNWGANWQSNAYLNGQSLSFK+T TDG+TR F ++ 
Sbjct: 181 NVAGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLNGQSLSFKITNTDGQTRFFTDIA 240

Query: 240 PSNWHFGQSFASSIQF 255
           P+NW FGQ+F+SS+QF
Sbjct: 241 PANWGFGQTFSSSVQF 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061967|ref|XP_002300688.1| hypothetical protein POPTRDRAFT_709919 [Populus trichocarpa] gi|222842414|gb|EEE79961.1| hypothetical protein POPTRDRAFT_709919 [Populus trichocarpa]

 Score =  435 bits (1119), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 204/256 (79%), Positives = 230/256 (89%), Gaps = 1/256 (0%)

Query: 1   MAKTLLTSAILIQLC-CLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTG 59
           M K LL  AI +Q C   ++++ AF+PSGWT+ HATFYGGSDASGTMGGACGYGNLYSTG
Sbjct: 1   MGKLLLAFAIWLQFCNYFAINVNAFAPSGWTKGHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 60  YGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDN 119
           YG  TAALSTALFNDGASCG+CYRIMCD+++D+RWCIKG SVTITATNFCPPNFALP++N
Sbjct: 61  YGTRTAALSTALFNDGASCGECYRIMCDFQTDSRWCIKGRSVTITATNFCPPNFALPNNN 120

Query: 120 GGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLIS 179
           GGWCNPP QHFDMA PAW+KIGIYRGGIVPVL+QRVPCKK GGVRFTINGR+YFELVLI+
Sbjct: 121 GGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRNYFELVLIT 180

Query: 180 NVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV 239
           NVAGAGSI+S  IKGS T W+AMSRNWG NWQSNAYLNGQSLSFKVTTTDG+TR F ++V
Sbjct: 181 NVAGAGSIQSVSIKGSKTGWLAMSRNWGVNWQSNAYLNGQSLSFKVTTTDGQTRFFTDIV 240

Query: 240 PSNWHFGQSFASSIQF 255
           P+NW FGQ+F SS+QF
Sbjct: 241 PANWGFGQTFQSSVQF 256

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356614667|gb|AET25522.1| expansin [Chimonanthus praecox]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 195/250 (78%), Positives = 229/250 (91%)

Query: 6   LTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTA 65
           L  A++  LC  ++ ++ FSPSGWT+AHATFYGGSDASGTMGGACG+GNLYSTGYG  TA
Sbjct: 7   LALAMMSLLCLETIGVEGFSPSGWTKAHATFYGGSDASGTMGGACGFGNLYSTGYGTRTA 66

Query: 66  ALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNP 125
           ALSTALFNDGASCG+C++I+CDY+SD +WC+KGTSVTITATNFCPPNFAL ++NGGWCNP
Sbjct: 67  ALSTALFNDGASCGECFQIICDYQSDPKWCLKGTSVTITATNFCPPNFALSNNNGGWCNP 126

Query: 126 PRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAG 185
           P QHFDMA PAW+K+G YRGGI+PV+Y+RVPCKK GGVRF+INGRDYFELVLISNV G+G
Sbjct: 127 PLQHFDMAQPAWEKLGFYRGGIIPVMYRRVPCKKQGGVRFSINGRDYFELVLISNVGGSG 186

Query: 186 SIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHF 245
           SI+S  IKGS T WMAMSRNWGANWQSN+YLNGQSLSFK+TTTDGETR+FP++VPS+WHF
Sbjct: 187 SIQSVSIKGSKTGWMAMSRNWGANWQSNSYLNGQSLSFKITTTDGETRLFPDIVPSSWHF 246

Query: 246 GQSFASSIQF 255
           GQ+F+SS+QF
Sbjct: 247 GQTFSSSVQF 256

Source: Chimonanthus praecox

Species: Chimonanthus praecox

Genus: Chimonanthus

Family: Calycanthaceae

Order: Laurales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459728|ref|XP_002285891.1| PREDICTED: expansin-A11 [Vitis vinifera] gi|302141731|emb|CBI18934.3| unnamed protein product [Vitis vinifera]

 Score =  431 bits (1109), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/256 (80%), Positives = 231/256 (90%), Gaps = 1/256 (0%)

Query: 1   MAKTLLTSAILIQLCCLSVS-IKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTG 59
           MAK LL +  ++++ C   S + AF+ SGWT+AHATFYGGSDASGTMGGACGYGNLYSTG
Sbjct: 1   MAKNLLHALAMVRVICYFFSNVNAFTASGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 60  YGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDN 119
           YG  TAALSTALFNDGASCGQCY+I+CDY+SD++WC KG SVTITATNFCPPN+ALPS+N
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYKIICDYQSDSQWCKKGASVTITATNFCPPNYALPSNN 120

Query: 120 GGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLIS 179
           GGWCNPP QHFDMA PAW+KIGIYRGGIVPVL+QRVPCKK GGVRF++NGRDYFELVLIS
Sbjct: 121 GGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLIS 180

Query: 180 NVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV 239
           NVAGAGSI+S  IKGS T+WMAMSRNWGANWQSNAYLNGQSLSFKVTTTDG T+ F NVV
Sbjct: 181 NVAGAGSIQSVSIKGSRTSWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGVTQEFDNVV 240

Query: 240 PSNWHFGQSFASSIQF 255
           PS+W FGQ+F+SS+QF
Sbjct: 241 PSDWGFGQTFSSSVQF 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357438557|ref|XP_003589554.1| Expansin [Medicago truncatula] gi|355478602|gb|AES59805.1| Expansin [Medicago truncatula]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 201/255 (78%), Positives = 223/255 (87%)

Query: 1   MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGY 60
           M K +     LI LCC +++  AF  SGWT AHATFYGGSDA GTMGGACGYGNLYS GY
Sbjct: 1   MTKVMFILGTLIGLCCFTINSYAFKASGWTNAHATFYGGSDAEGTMGGACGYGNLYSQGY 60

Query: 61  GISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNG 120
           G  TAALSTALFNDGASCGQCY+I+CDYK+D RWCIKG S+TITATNFCPPNF LP+D+G
Sbjct: 61  GTRTAALSTALFNDGASCGQCYKIICDYKTDPRWCIKGRSITITATNFCPPNFDLPNDDG 120

Query: 121 GWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISN 180
           GWCNPP +HFDMA PAW+KIGIYRGGIVPVL+QRVPCKK GGVRF++NGRDYFELVLISN
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFSVNGRDYFELVLISN 180

Query: 181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVP 240
           +AGAGSI+S  IKGS T+WMAMSRNWGANWQSNAYLNGQS+SFKVTTTDG TR F ++VP
Sbjct: 181 LAGAGSIQSVSIKGSKTDWMAMSRNWGANWQSNAYLNGQSMSFKVTTTDGVTRTFQDIVP 240

Query: 241 SNWHFGQSFASSIQF 255
           SNW FGQSF+S IQF
Sbjct: 241 SNWGFGQSFSSKIQF 255

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807858|ref|NP_001241931.1| uncharacterized protein LOC100527629 precursor [Glycine max] gi|255636189|gb|ACU18436.1| unknown [Glycine max]

 Score =  424 bits (1089), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 199/257 (77%), Positives = 226/257 (87%), Gaps = 3/257 (1%)

Query: 1   MAKTL--LTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYST 58
           MAK +  L  + L+ LCC ++   AFSPSGWT AHATFYGGSDASGTMGGACGYGNLYST
Sbjct: 1   MAKVMFGLVCSFLV-LCCFTIDTSAFSPSGWTNAHATFYGGSDASGTMGGACGYGNLYST 59

Query: 59  GYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSD 118
           GYG  TAALSTA+FNDGASCG+CY+I+CDY++D RWC+KG SVTITAT+FCPPNFALP++
Sbjct: 60  GYGTDTAALSTAIFNDGASCGECYKIICDYQTDPRWCLKGASVTITATSFCPPNFALPNN 119

Query: 119 NGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLI 178
           NGGWCNPP +HFDMA PAW+KIGIYRGGIVPVL+QRVPC K GG+RF++NGRDYFELVLI
Sbjct: 120 NGGWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCVKKGGIRFSVNGRDYFELVLI 179

Query: 179 SNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNV 238
           SNV GAGSI+S  IKGS T WM MSRNWGANWQSNAYLNGQSLSF+VTTTDG TR F +V
Sbjct: 180 SNVGGAGSIQSVSIKGSKTGWMTMSRNWGANWQSNAYLNGQSLSFRVTTTDGVTRFFQDV 239

Query: 239 VPSNWHFGQSFASSIQF 255
           VPSNW FGQ+F +S+QF
Sbjct: 240 VPSNWAFGQTFPTSVQF 256

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517959|ref|XP_003527652.1| PREDICTED: expansin-A11-like [Glycine max]

 Score =  421 bits (1082), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 195/255 (76%), Positives = 220/255 (86%)

Query: 1   MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGY 60
           MAK +      + LCC +++  AFS SGWT AHATFYGGSDASGTMGGACGYGNLYSTGY
Sbjct: 1   MAKVMFVLVSFLVLCCYTINTCAFSSSGWTNAHATFYGGSDASGTMGGACGYGNLYSTGY 60

Query: 61  GISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNG 120
           G  TAALSTALFNDGASCG+CY+I CDY++D RWC+KG SVTITATNFCPPNFALP++NG
Sbjct: 61  GTDTAALSTALFNDGASCGECYKITCDYQADPRWCLKGASVTITATNFCPPNFALPNNNG 120

Query: 121 GWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISN 180
           GWCNPP +HFDMA PAW+KIGIYRGGIVPVL+QRVPC + GGVRFT+NG +YFELVLI+N
Sbjct: 121 GWCNPPLKHFDMAQPAWEKIGIYRGGIVPVLFQRVPCARQGGVRFTMNGNNYFELVLITN 180

Query: 181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVP 240
           V GAGSIKS YIKGS T WMAM+RNWG NWQSN YLNGQSLSFKVTTTDG TR+F  VVP
Sbjct: 181 VGGAGSIKSVYIKGSKTGWMAMTRNWGENWQSNEYLNGQSLSFKVTTTDGVTRLFRGVVP 240

Query: 241 SNWHFGQSFASSIQF 255
           +NW FGQ+F + +QF
Sbjct: 241 ANWAFGQTFPTRVQF 255

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536957|ref|NP_001234017.1| expansin11 precursor [Solanum lycopersicum] gi|30519752|emb|CAD90260.1| expansin11 [Solanum lycopersicum]

 Score =  416 bits (1069), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 199/257 (77%), Positives = 221/257 (85%), Gaps = 2/257 (0%)

Query: 1   MAKT-LLTSAILIQLCCLSVSI-KAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYST 58
           MAK  +LT   +   C + VS   AFS SGW  AHATFYGGSDASGTMGGACGYGNLYST
Sbjct: 1   MAKIGILTLGFIFVFCNILVSTANAFSASGWMSAHATFYGGSDASGTMGGACGYGNLYST 60

Query: 59  GYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSD 118
           GYG +TAALSTALFNDGASCGQCY+IMCDY  D++WCIKGTS+T TATNFCPPNFALPS+
Sbjct: 61  GYGTNTAALSTALFNDGASCGQCYKIMCDYNQDSKWCIKGTSITTTATNFCPPNFALPSN 120

Query: 119 NGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLI 178
           NGGWCNPPR HFDMA PAW+KIGIYRGGIVPV+YQR+PC K GGVRFTINGRDYFEL++I
Sbjct: 121 NGGWCNPPRPHFDMAQPAWEKIGIYRGGIVPVMYQRIPCVKKGGVRFTINGRDYFELLMI 180

Query: 179 SNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNV 238
           SNV GAGSI+S  IKGS TNWM M+RNWGANWQSNA+LNGQSLSFKVTT+DG T+ F NV
Sbjct: 181 SNVGGAGSIQSVQIKGSRTNWMTMARNWGANWQSNAFLNGQSLSFKVTTSDGVTKTFLNV 240

Query: 239 VPSNWHFGQSFASSIQF 255
             SNW FGQ+++SSI F
Sbjct: 241 ASSNWRFGQTYSSSINF 257

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	255
TAIR|locus:2198576	252	EXPA11 "expansin 11" [Arabidop	0.988	1.0	0.737	1.9e-106
TAIR|locus:2133427	255	EXPA17 "expansin A17" [Arabido	0.976	0.976	0.660	6.3e-92
TAIR|locus:2007106	275	EXPA1 "expansin A1" [Arabidops	0.949	0.88	0.628	4.1e-88
TAIR|locus:2200625	259	EXPA10 "expansin A10" [Arabido	0.945	0.930	0.634	8.6e-88
TAIR|locus:2040686	262	EXP3 [Arabidopsis thaliana (ta	0.882	0.858	0.662	6.9e-86
TAIR|locus:2043240	257	EXPA4 "expansin A4" [Arabidops	0.949	0.941	0.642	6.9e-86
TAIR|locus:2053260	257	EXPA6 "expansin A6" [Arabidops	0.968	0.961	0.623	8e-85
TAIR|locus:2153569	255	EXPA2 "expansin A2" [Arabidops	0.984	0.984	0.594	2.1e-84
TAIR|locus:2061918	253	EXPA8 "expansin A8" [Arabidops	0.878	0.885	0.655	3.4e-84
TAIR|locus:2056670	253	EXPA15 "expansin A15" [Arabido	0.980	0.988	0.588	7.2e-84

TAIR|locus:2198576 EXPA11 "expansin 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 1053 (375.7 bits), Expect = 1.9e-106, P = 1.9e-106
 Identities = 188/255 (73%), Positives = 216/255 (84%)

Query:     1 MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGY 60
             M+K+L   A+L     L +++ AF PSG T  HATFYGGSDASGTMGGACGYG+LYS GY
Sbjct:     1 MSKSLAGLAVL---AALFIAVDAFRPSGLTNGHATFYGGSDASGTMGGACGYGDLYSAGY 57

Query:    61 GISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNG 120
             G  TAALSTALFNDGASCG+CYRI CD+ +D+RWC+KG SV ITATNFCPPNFALP++NG
Sbjct:    58 GTMTAALSTALFNDGASCGECYRITCDHAADSRWCLKGASVVITATNFCPPNFALPNNNG 117

Query:   121 GWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISN 180
             GWCNPP +HFDMA PAW+KIGIYRGGIVPV++QRV C K GGVRF INGRDYFELV I N
Sbjct:   118 GWCNPPLKHFDMAQPAWEKIGIYRGGIVPVVFQRVSCYKKGGVRFRINGRDYFELVNIQN 177

Query:   181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVP 240
             V GAGSIKS  IKGS T W+AMSRNWGANWQSNAYL+GQ+LSF +TTTDG TR+F NVVP
Sbjct:   178 VGGAGSIKSVSIKGSKTGWLAMSRNWGANWQSNAYLDGQALSFSITTTDGATRVFLNVVP 237

Query:   241 SNWHFGQSFASSIQF 255
             S+W FGQ ++S++QF
Sbjct:   238 SSWSFGQIYSSNVQF 252

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2133427 EXPA17 "expansin A17" [Arabidopsis thaliana (taxid:3702)]

 Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
 Identities = 167/253 (66%), Positives = 197/253 (77%)

Query:     4 TLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGIS 63
             +LL + I   +  + +S  +   +GW QAHATFYGGSDASGTMGGACGYGNLY+ GY  +
Sbjct:     6 SLLVAMIFSTMFFMKISSVS---AGWLQAHATFYGGSDASGTMGGACGYGNLYTDGYKTN 62

Query:    64 TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWC 123
             TAALSTALFNDG SCG CY+I+CD     +WC+KG S+TITATNFCPPNFA  SDNGGWC
Sbjct:    63 TAALSTALFNDGKSCGGCYQILCDATKVPQWCLKGKSITITATNFCPPNFAQASDNGGWC 122

Query:   124 NPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAG 183
             NPPR HFDMA PA+  I  Y+ GIVP+LY++V C++ GG+RFTINGR+YFELVLISNVAG
Sbjct:   123 NPPRPHFDMAQPAFLTIAKYKAGIVPILYKKVGCRRSGGMRFTINGRNYFELVLISNVAG 182

Query:   184 AGSIKSAYIKGSSTN-WMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSN 242
              G I   +IKGS +N W  MSRNWGAN+QSN YLNGQSLSFKV  +DG  +   NVVPSN
Sbjct:   183 GGEISKVWIKGSKSNKWETMSRNWGANYQSNTYLNGQSLSFKVQLSDGSIKAALNVVPSN 242

Query:   243 WHFGQSFASSIQF 255
             W FGQSF S++ F
Sbjct:   243 WRFGQSFKSNVNF 255

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

TAIR|locus:2007106 EXPA1 "expansin A1" [Arabidopsis thaliana (taxid:3702)]

 Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
 Identities = 154/245 (62%), Positives = 189/245 (77%)

Query:     5 LLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGIST 64
             L+T   +  L  ++  +  ++  GW  AHATFYGG DASGTMGGACGYGNLYS GYG +T
Sbjct:     3 LVTFLFIATLGAMTSHVNGYAGGGWVNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNT 62

Query:    65 AALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCN 124
             AALSTALFN+G SCG C+ I C  ++D +WC+ G S+ +TATNFCPPN ALP++ GGWCN
Sbjct:    63 AALSTALFNNGLSCGACFEIRC--QNDGKWCLPG-SIVVTATNFCPPNNALPNNAGGWCN 119

Query:   125 PPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGA 184
             PP+QHFD++ P +Q+I  YR GIVPV Y+RVPC + GG+RFTING  YF LVLI+NV GA
Sbjct:   120 PPQQHFDLSQPVFQRIAQYRAGIVPVAYRRVPCVRRGGIRFTINGHSYFNLVLITNVGGA 179

Query:   185 GSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWH 244
             G + SA +KGS T W AMSRNWG NWQSN+YLNGQSLSFKVTT+DG+T +  NV  + W 
Sbjct:   180 GDVHSAMVKGSRTGWQAMSRNWGQNWQSNSYLNGQSLSFKVTTSDGQTIVSNNVANAGWS 239

Query:   245 FGQSF 249
             FGQ+F
Sbjct:   240 FGQTF 244

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006949 "syncytium formation" evidence=IEP

GO:0009739 "response to gibberellin stimulus" evidence=TAS

GO:0010114 "response to red light" evidence=IEP

GO:0010119 "regulation of stomatal movement" evidence=IMP

TAIR|locus:2200625 EXPA10 "expansin A10" [Arabidopsis thaliana (taxid:3702)]

 Score = 877 (313.8 bits), Expect = 8.6e-88, P = 8.6e-88
 Identities = 156/246 (63%), Positives = 190/246 (77%)

Query:    10 ILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALST 69
             ++I +  ++ S+  +   GW  AHATFYGG DASGTMGGACGYGNLYS GYG STAALST
Sbjct:    18 VMIMVGVMASSVSGYG-GGWINAHATFYGGGDASGTMGGACGYGNLYSQGYGTSTAALST 76

Query:    70 ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQH 129
             ALFN+G SCG C+ I C+  +D +WC+ G S+ +TATNFCPPN AL ++NGGWCNPP +H
Sbjct:    77 ALFNNGLSCGSCFEIRCE--NDGKWCLPG-SIVVTATNFCPPNNALANNNGGWCNPPLEH 133

Query:   130 FDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKS 189
             FD+A P +Q+I  YR GIVPV Y+RVPC++ GG+RFTING  YF LVLI+NV GAG + S
Sbjct:   134 FDLAQPVFQRIAQYRAGIVPVSYRRVPCRRRGGIRFTINGHSYFNLVLITNVGGAGDVHS 193

Query:   190 AYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSF 249
             A IKGS T W AMSRNWG NWQSN+YLNGQ+LSFKVTT+DG T +  N  P+ W +GQ+F
Sbjct:   194 AAIKGSRTVWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVVSFNAAPAGWSYGQTF 253

Query:   250 ASSIQF 255
             A   QF
Sbjct:   254 AGG-QF 258

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS;IMP

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0005199 "structural constituent of cell wall" evidence=TAS

GO:0009505 "plant-type cell wall" evidence=TAS

GO:0006949 "syncytium formation" evidence=IEP

TAIR|locus:2040686 EXP3 [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 151/228 (66%), Positives = 179/228 (78%)

Query:    24 FSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYR 83
             +S   W  AHATFYGGSDASGTMGGACGYGNLYS GYG++TAALSTALFN+G SCG C+ 
Sbjct:    31 YSGGPWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGFSCGACFE 90

Query:    84 IMCDYKSDTRWCIKGT-SVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI 142
             I C    D RWC+ G  S+ +TATNFCPPNFA PSD+GGWCNPPR+HFD+A P + KIG+
Sbjct:    91 IKCT--DDPRWCVPGNPSILVTATNFCPPNFAQPSDDGGWCNPPREHFDLAMPMFLKIGL 148

Query:   143 YRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAM 202
             YR GIVPV Y+RVPC+K GG+RFT+NG  YF LVL++NVAGAG I    +KGS T+W+ M
Sbjct:   149 YRAGIVPVSYRRVPCRKIGGIRFTVNGFRYFNLVLVTNVAGAGDINGVSVKGSKTDWVRM 208

Query:   203 SRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFA 250
             SRNWG NWQSNA L GQSLSF+VT +D  +    NV P+ W FGQ+F+
Sbjct:   209 SRNWGQNWQSNAVLIGQSLSFRVTASDRRSSTSWNVAPATWQFGQTFS 256

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=TAS

GO:0010114 "response to red light" evidence=IEP

TAIR|locus:2043240 EXPA4 "expansin A4" [Arabidopsis thaliana (taxid:3702)]

 Score = 859 (307.4 bits), Expect = 6.9e-86, P = 6.9e-86
 Identities = 158/246 (64%), Positives = 185/246 (75%)

Query:     5 LLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGIST 64
             L T+ +L  L    +    +S   W  AHATFYGGSDASGTMGGACGYGNLYS GYG +T
Sbjct:     8 LFTTFVLFSLADARIP-GIYSGGAWQNAHATFYGGSDASGTMGGACGYGNLYSQGYGTNT 66

Query:    65 AALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGT-SVTITATNFCPPNFALPSDNGGWC 123
             AALSTALFN+G SCG C+ + C   +D +WC  G+ S+ ITATNFCPPN A PSDNGGWC
Sbjct:    67 AALSTALFNNGMSCGACFELKC--ANDPQWCHSGSPSILITATNFCPPNLAQPSDNGGWC 124

Query:   124 NPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAG 183
             NPPR+HFD+A P + KI  YR GIVPV Y+RVPC+K GG+RFTING  YF LVLI+NVAG
Sbjct:   125 NPPREHFDLAMPVFLKIAQYRAGIVPVSYRRVPCRKRGGIRFTINGHRYFNLVLITNVAG 184

Query:   184 AGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNW 243
             AG I  A +KGS T WM++SRNWG NWQSNA L GQ+LSF+VT +D  T    N+VPSNW
Sbjct:   185 AGDIVRASVKGSRTGWMSLSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNMVPSNW 244

Query:   244 HFGQSF 249
              FGQ+F
Sbjct:   245 QFGQTF 250

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006949 "syncytium formation" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2053260 EXPA6 "expansin A6" [Arabidopsis thaliana (taxid:3702)]

 Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
 Identities = 157/252 (62%), Positives = 191/252 (75%)

Query:     1 MAKTLLTSAILIQLCCLSVS-IKA-FSPSGWTQAHATFYGGSDASGTMGGACGYGNLYST 58
             MA   L  ++L  +  LS + I   ++  GW  AHATFYGGSDASGTMGGACGYGNLYS 
Sbjct:     1 MAMLGLVLSVLTTILALSEARIPGVYNGGGWETAHATFYGGSDASGTMGGACGYGNLYSQ 60

Query:    59 GYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGT-SVTITATNFCPPNFALPS 117
             GYG++TAALSTALFN+G SCG C+ + C   SD +WC  G+ S+ ITATNFCPPNFA PS
Sbjct:    61 GYGVNTAALSTALFNNGFSCGACFELKC--ASDPKWCHSGSPSIFITATNFCPPNFAQPS 118

Query:   118 DNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVL 177
             DNGGWCNPPR HFD+A P + KI  YR GIVPV ++RVPC+K GG+RFTING  YF LVL
Sbjct:   119 DNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSFRRVPCRKRGGIRFTINGFRYFNLVL 178

Query:   178 ISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPN 237
             ++NVAGAG+I    +KG+ T+WM MSRNWG NWQSN+ L GQSLSF+VT++D  +    N
Sbjct:   179 VTNVAGAGNIVRLGVKGTHTSWMTMSRNWGQNWQSNSVLVGQSLSFRVTSSDRRSSTSWN 238

Query:   238 VVPSNWHFGQSF 249
             + P+NW FGQ+F
Sbjct:   239 IAPANWKFGQTF 250

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0006949 "syncytium formation" evidence=IEP;RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2153569 EXPA2 "expansin A2" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 154/259 (59%), Positives = 191/259 (73%)

Query:     1 MAKTLLTSAILIQLCCLSV---SIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYS 57
             M  T  +  + + LC L+    SI +    GW + HATFYGG+DASGTMGGACGYGNL+S
Sbjct:     1 MNLTEYSHILFLSLCTLNFCLYSINSDDNGGWERGHATFYGGADASGTMGGACGYGNLHS 60

Query:    58 TGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPS 117
              GYG+ TAALSTALFN G  CG C+ + C+   D  WCI G S+ ++ATNFCPPNFAL +
Sbjct:    61 QGYGLQTAALSTALFNSGQKCGACFELQCE--DDPEWCIPG-SIIVSATNFCPPNFALAN 117

Query:   118 DNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVL 177
             DNGGWCNPP +HFD+A PA+ +I  YR GIVPV ++RVPC+K GG+RFTING  YF+LVL
Sbjct:   118 DNGGWCNPPLKHFDLAEPAFLQIAQYRAGIVPVAFRRVPCEKGGGIRFTINGNPYFDLVL 177

Query:   178 ISNVAGAGSIKSAYIKGSSTN-WMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFP 236
             I+NV GAG I++  +KGS T+ W +MSRNWG NWQSN YL GQSLSF+VT +DG T +  
Sbjct:   178 ITNVGGAGDIRAVSLKGSKTDQWQSMSRNWGQNWQSNTYLRGQSLSFQVTDSDGRTVVSY 237

Query:   237 NVVPSNWHFGQSFASSIQF 255
             +VVP +W FGQ+F    QF
Sbjct:   238 DVVPHDWQFGQTFEGG-QF 255

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=TAS

TAIR|locus:2061918 EXPA8 "expansin A8" [Arabidopsis thaliana (taxid:3702)]

 Score = 843 (301.8 bits), Expect = 3.4e-84, P = 3.4e-84
 Identities = 150/229 (65%), Positives = 178/229 (77%)

Query:    28 GWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCD 87
             GW   HATFYGG DASGTMGGACGYGNLY  GYG +TAALSTALFN+G +CG CY + C+
Sbjct:    29 GWQGGHATFYGGEDASGTMGGACGYGNLYGQGYGTNTAALSTALFNNGLTCGACYEMKCN 88

Query:    88 YKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGI 147
                D RWC+ G+++T+TATNFCPPN  L +DNGGWCNPP QHFD+A PA+ +I  YR GI
Sbjct:    89 --DDPRWCL-GSTITVTATNFCPPNPGLSNDNGGWCNPPLQHFDLAEPAFLQIAQYRAGI 145

Query:   148 VPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSST-NWMAMSRNW 206
             VPV ++RVPC K GG+RFTING  YF LVLISNV GAG + +  IKGS T +W AMSRNW
Sbjct:   146 VPVSFRRVPCMKKGGIRFTINGHSYFNLVLISNVGGAGDVHAVSIKGSKTQSWQAMSRNW 205

Query:   207 GANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
             G NWQSN+Y+N QSLSF+VTT+DG T +  +V PSNW FGQ++    QF
Sbjct:   206 GQNWQSNSYMNDQSLSFQVTTSDGRTLVSNDVAPSNWQFGQTYQGG-QF 253

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP

TAIR|locus:2056670 EXPA15 "expansin A15" [Arabidopsis thaliana (taxid:3702)]

 Score = 840 (300.8 bits), Expect = 7.2e-84, P = 7.2e-84
 Identities = 150/255 (58%), Positives = 184/255 (72%)

Query:     1 MAKTLLTSAILIQLCCLSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGY 60
             M K  L    L     +  S+  +  +GW  AHATFYGGSDASGTMGGACGYGNLYS GY
Sbjct:     3 MGKMGLLGIALFCFAAMVCSVHGYD-AGWVNAHATFYGGSDASGTMGGACGYGNLYSQGY 61

Query:    61 GISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNG 120
             G +TAALSTALFN+G SCG C+ I C  +SD  WC+ G ++ +TATNFCPPN ALP++ G
Sbjct:    62 GTNTAALSTALFNNGLSCGACFEIKC--QSDGAWCLPG-AIIVTATNFCPPNNALPNNAG 118

Query:   121 GWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISN 180
             GWCNPP  HFD++ P +Q+I  Y+ G+VPV Y+RVPC + GG+RFTING  YF LVL++N
Sbjct:   119 GWCNPPLHHFDLSQPVFQRIAQYKAGVVPVSYRRVPCMRRGGIRFTINGHSYFNLVLVTN 178

Query:   181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVP 240
             V GAG + S  +KGS T W  MSRNWG NWQSN  LNGQ+LSFKVT +DG T +  N+ P
Sbjct:   179 VGGAGDVHSVAVKGSRTRWQQMSRNWGQNWQSNNLLNGQALSFKVTASDGRTVVSNNIAP 238

Query:   241 SNWHFGQSFASSIQF 255
             ++W FGQ+F    QF
Sbjct:   239 ASWSFGQTFTGR-QF 252

GO:0005576 "extracellular region" evidence=ISM;IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

GO:0009826 "unidimensional cell growth" evidence=ISS;NAS

GO:0009828 "plant-type cell wall loosening" evidence=ISS;NAS

GO:0009831 "plant-type cell wall modification involved in multidimensional cell growth" evidence=ISS

GO:0006949 "syncytium formation" evidence=IEP

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q7XWU8	EXPA1_ORYSJ	No assigned EC number	0.7551	0.9607	0.9386	yes	no
Q9LNU3	EXP11_ARATH	No assigned EC number	0.7679	0.9294	0.9404	yes	no
Q4PR44	EXP22_ORYSJ	No assigned EC number	0.7029	0.9333	0.85	no	no
Q4PR43	EXP23_ORYSJ	No assigned EC number	0.7155	0.9058	0.8651	no	no
Q4PR42	EXP24_ORYSJ	No assigned EC number	0.7198	0.9058	0.8309	no	no
A2Y5R6	EXPA4_ORYSI	No assigned EC number	0.6352	0.9450	0.9796	N/A	no
Q4PR52	EXP13_ORYSJ	No assigned EC number	0.7339	0.9098	0.8854	no	no
Q7G6Z2	EXP12_ORYSJ	No assigned EC number	0.7207	0.8666	0.884	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrEXPA18 alpha-expansin (256 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	255
PLN00193	256	PLN00193, PLN00193, expansin-A; Provisional	1e-170
PLN00050	247	PLN00050, PLN00050, expansin A; Provisional	1e-113
smart00837	87	smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like	6e-52
pfam01357	82	pfam01357, Pollen_allerg_1, Pollen allergen	5e-33
pfam03330	77	pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like	3e-29
PLN03023	247	PLN03023, PLN03023, Expansin-like B1; Provisional	3e-20

>gnl|CDD|215097 PLN00193, PLN00193, expansin-A; Provisional

 Score =  470 bits (1211), Expect = e-170
 Identities = 213/256 (83%), Positives = 236/256 (92%), Gaps = 1/256 (0%)

Query: 1   MAKTLLTSAILIQLCC-LSVSIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTG 59
           M+K+LL  AIL+Q CC L +++ AF+PSGWT+AHATFYGGSDASGTMGGACGYGNLYSTG
Sbjct: 1   MSKSLLGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTG 60

Query: 60  YGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDN 119
           YG  TAALSTALFNDGASCGQCYRIMCDY++D+RWCIKG SVTITATNFCPPN+ALP++N
Sbjct: 61  YGTRTAALSTALFNDGASCGQCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNN 120

Query: 120 GGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLIS 179
           GGWCNPP QHFDMA PAW+KIGIYRGGIVPVL+QRVPCKK GGVRFTINGRDYFELVLIS
Sbjct: 121 GGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKKHGGVRFTINGRDYFELVLIS 180

Query: 180 NVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV 239
           NV GAGSI+S  IKGS T WMAMSRNWGANWQSNAYL+GQSLSFKVTTTDG+TR F NVV
Sbjct: 181 NVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVV 240

Query: 240 PSNWHFGQSFASSIQF 255
           P+NW FGQ+F+SS+QF
Sbjct: 241 PANWGFGQTFSSSVQF 256

Length = 256

>gnl|CDD|165628 PLN00050, PLN00050, expansin A; Provisional

 Score =  325 bits (833), Expect = e-113
 Identities = 155/223 (69%), Positives = 180/223 (80%), Gaps = 3/223 (1%)

Query: 27  SGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMC 86
           SGWT AHATFYGG DASGTMGGACGYGNLYS GYG +TAALSTALFN+G SCG C+ I C
Sbjct: 23  SGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKC 82

Query: 87  DYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGG 146
              +D  WC+ G S+ ITATNFCPPN ALP+++GGWCNPP+QHFD++ P +QKI  Y+ G
Sbjct: 83  --VNDNIWCLPG-SIIITATNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAG 139

Query: 147 IVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNW 206
           IVPV Y+RV C+K GG+RFTING  YF LVLI+NV GAG I +  IKGS +NW AMSRNW
Sbjct: 140 IVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAGDIVAVSIKGSKSNWQAMSRNW 199

Query: 207 GANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSF 249
           G NWQSN+YLNGQ+LSFKVTT+DG T I  N  PSNW FGQ++
Sbjct: 200 GQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTY 242

Length = 247

>gnl|CDD|129070 smart00837, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score =  163 bits (414), Expect = 6e-52
 Identities = 60/89 (67%), Positives = 72/89 (80%), Gaps = 2/89 (2%)

Query: 64  TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWC 123
           TAALSTALFN+GASCG CY IMC      +WC  G S+T+TATNFCPPN+AL +DNGGWC
Sbjct: 1   TAALSTALFNNGASCGACYEIMC--VDSPKWCKPGGSITVTATNFCPPNYALSNDNGGWC 58

Query: 124 NPPRQHFDMAYPAWQKIGIYRGGIVPVLY 152
           NPPR+HFD++ PA++KI  Y+ GIVPV Y
Sbjct: 59  NPPRKHFDLSQPAFEKIAQYKAGIVPVKY 87

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 87

>gnl|CDD|216453 pfam01357, Pollen_allerg_1, Pollen allergen

 Score =  114 bits (289), Expect = 5e-33
 Identities = 43/82 (52%), Positives = 56/82 (68%), Gaps = 4/82 (4%)

Query: 163 VRFTINGR--DYFELVLISNVAGAGSIKSAYIKGS-STNWMAMSRNWGANWQSNAYLNGQ 219
           VRFT+NG    YF  VL+ NV G G I +  IK + S  W+ MSRNWGANWQS++ L G 
Sbjct: 1   VRFTVNGGSNPYFLAVLVENVGGDGDIVAVEIKEAGSGEWIPMSRNWGANWQSDSVLLGG 60

Query: 220 SLSFKVTTTD-GETRIFPNVVP 240
            LSF+VT++D G+T +  NV+P
Sbjct: 61  PLSFRVTSSDSGKTLVADNVIP 82

This family contains allergens lol PI, PII and PIII from Lolium perenne. Length = 82

>gnl|CDD|217497 pfam03330, DPBB_1, Rare lipoprotein A (RlpA)-like double-psi beta-barrel

 Score =  104 bits (263), Expect = 3e-29
 Identities = 37/90 (41%), Positives = 51/90 (56%), Gaps = 14/90 (15%)

Query: 64  TAALSTALFNDGASCGQCYRIMCDY-KSDTRWCIKGTSVTITATNFCPPNFALPSDNGGW 122
           TAA S +L+NDG +CG+CY++ C      T  C    SVT+T T+ CP            
Sbjct: 1   TAAGSASLYNDGTACGECYQVKCLTAAHPTGTCRVLRSVTVTITDRCPF----------- 49

Query: 123 CNPPRQHFDMAYPAWQKIGIYRGGIVPVLY 152
             PPR+HFD++ PA++ +   R GIVPV Y
Sbjct: 50  --PPRRHFDLSGPAFEALAKPRAGIVPVEY 77

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen. Length = 77

>gnl|CDD|215542 PLN03023, PLN03023, Expansin-like B1; Provisional

 Score = 86.4 bits (214), Expect = 3e-20
 Identities = 72/250 (28%), Positives = 117/250 (46%), Gaps = 22/250 (8%)

Query: 14  LCCLSVSIKAFSPS-GWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALF 72
             C+ V +     S  +T + AT+YG  D  GT  GACG+G    T  G + A +S  L+
Sbjct: 9   FLCVIVLLPLLCKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVSR-LY 67

Query: 73  NDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDM 132
            +G  CG CY++ C  K+       G +V +T             D   +   PR +  +
Sbjct: 68  RNGTGCGACYQVRC--KAPNLCSDDGVNVVVTDYG--------EGDKTDFILSPRAYARL 117

Query: 133 AYPAWQKIGIYRGGIVPVLYQRVPCKKPG-GVRFTINGR----DYFELVLISNVAGAGSI 187
           A P      ++  G+V V Y+R+PC+  G  + F ++      DY  +V++   AG   I
Sbjct: 118 ARPN-MAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPDYLAIVMLY-QAGQNDI 175

Query: 188 KSAYI-KGSSTNWMAMSRNWGANWQ-SNAYLNGQSLSFKVTTTDGETRI-FPNVVPSNWH 244
            +  I +     W  M + +GA W   N      +L F+V+ + G+T +   NV+PS+W 
Sbjct: 176 LAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKGPITLRFQVSGSAGQTWVQAKNVIPSDWK 235

Query: 245 FGQSFASSIQ 254
            G ++ S+IQ
Sbjct: 236 AGVAYDSNIQ 245

Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	255
PLN00193	256	expansin-A; Provisional	100.0
PLN00050	247	expansin A; Provisional	100.0
PLN03023	247	Expansin-like B1; Provisional	100.0
PLN03024	125	Putative EG45-like domain containing protein 1; Pr	99.96
COG4305	232	Endoglucanase C-terminal domain/subunit and relate	99.95
smart00837	87	DPBB_1 Rare lipoprotein A (RlpA)-like double-psi b	99.95
PLN00115	118	pollen allergen group 3; Provisional	99.91
PF01357	82	Pollen_allerg_1: Pollen allergen; InterPro: IPR007	99.88
PF03330	78	DPBB_1: Rare lipoprotein A (RlpA)-like double-psi	99.78
PF00967	119	Barwin: Barwin family; InterPro: IPR001153 Barwin	99.06
PF07249	119	Cerato-platanin: Cerato-platanin; InterPro: IPR010	98.15
TIGR00413	208	rlpA rare lipoprotein A. This is a family of proka	98.0
COG0797	233	RlpA Lipoproteins [Cell envelope biogenesis, outer	97.82
PRK10672	361	rare lipoprotein A; Provisional	97.27
PF02015	201	Glyco_hydro_45: Glycosyl hydrolase family 45; Inte	90.72

>PLN00193 expansin-A; Provisional

Probab=100.00  E-value=1.1e-75  Score=520.63  Aligned_cols=255  Identities=83%  Similarity=1.469  Sum_probs=238.3

Q ss_pred             ChhhhHHHHHHHHHHhhhc-cccccCCCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCc
Q 025298            1 MAKTLLTSAILIQLCCLSV-SIKAFSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCG   79 (255)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG   79 (255)
                      |.++|+-+++|++|||.+- +.+.+..++|++++|||||++++.++++|||||+++...+++.++||+|+++|++|.+||
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~a~AT~Yg~~d~~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CG   80 (256)
T PLN00193          1 MSKSLLGLAILLQFCCYLFINVNAFTPSGWTKAHATFYGGSDASGTMGGACGYGNLYSTGYGTRTAALSTALFNDGASCG   80 (256)
T ss_pred             CchhhHHHHHHHHHHHHHHhhccCcCCCCceeeEEEEcCCCCCCCCCCcccCCCCccccCCCceeeecCHhHccCCcccc
Confidence            7889998899998877544 556666779999999999999988899999999998888899999999999999999999


Q ss_pred             ceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCC
Q 025298           80 QCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKK  159 (255)
Q Consensus        80 ~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~  159 (255)
                      +||||+|.....++.|.+|++|+|+|||.||++|.+|.+|++||++++.|||||.+||.+||....|+|+|+||||+|++
T Consensus        81 aCyev~C~~~~~~~~C~~g~sV~Vt~td~CP~n~~~~~~~ggwC~~~~~HFDLS~~AF~~iA~~~~Giv~V~yrRVpC~~  160 (256)
T PLN00193         81 QCYRIMCDYQADSRWCIKGASVTITATNFCPPNYALPNNNGGWCNPPLQHFDMAQPAWEKIGIYRGGIVPVLFQRVPCKK  160 (256)
T ss_pred             CeEEEECCCCCCCccccCCCeEEEEEecCCCCcccccccCCCcCCCCCcccccCHHHHHHHhhhcCCeEeEEEEEecccc
Confidence            99999996433467898878999999999999999999999999988899999999999999999999999999999999


Q ss_pred             CCceeEEEcCcCceeEEEEEeecCCcceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeCccc
Q 025298          160 PGGVRFTINGRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVV  239 (255)
Q Consensus       160 ~gni~~~v~g~~~w~~v~v~n~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~~vi  239 (255)
                      +|||+|+|++++||++|+|.|++|+++|++|+||+++++|++|+|+||++|+++.++.++||+||||+.+|+++++.|||
T Consensus       161 ~G~i~f~v~gn~y~~~vlv~nv~G~gdV~~v~Ik~~~~~W~~M~R~wGa~W~~~~~l~g~plsfRvts~~G~~~~~~~vi  240 (256)
T PLN00193        161 HGGVRFTINGRDYFELVLISNVGGAGSIQSVSIKGSKTGWMAMSRNWGANWQSNAYLDGQSLSFKVTTTDGQTRFFLNVV  240 (256)
T ss_pred             CCCcEEEEcCCccEEEEEEEEeCCCccEEEEEEecCCCCeeECcccccceeEecCCCCCCCEEEEEEEcCCeEEEECcee
Confidence            99999999999999999999999999999999999878899999999999999988887899999999999999999999


Q ss_pred             CCCCCCCcEEeccCCC
Q 025298          240 PSNWHFGQSFASSIQF  255 (255)
Q Consensus       240 p~~w~~G~~y~s~vqf  255 (255)
                      |++|++|++|+++|||
T Consensus       241 Pa~W~~G~ty~s~vqf  256 (256)
T PLN00193        241 PANWGFGQTFSSSVQF  256 (256)
T ss_pred             CCCCCCCCeEecCccC
Confidence            9999999999999998

>PLN00050 expansin A; Provisional

Probab=100.00  E-value=5.4e-71  Score=488.88  Aligned_cols=226  Identities=69%  Similarity=1.293  Sum_probs=215.1

Q ss_pred             CCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEE
Q 025298           26 PSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITA  105 (255)
Q Consensus        26 ~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V  105 (255)
                      .++|..++|||||.+++.|+++|||||+++..++++.++||+|+++|++|.+||+||||+|.+.  +.+|.++ +|+|+|
T Consensus        22 ~~~W~~a~AT~Yg~~dg~gt~gGACGYg~l~~~~~g~~~AAls~~lf~~G~~CGaCyeV~C~~~--~~~C~~g-sV~V~i   98 (247)
T PLN00050         22 GSGWTGAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVND--NIWCLPG-SIIITA   98 (247)
T ss_pred             CCCccccEEEEcCCCCCCCCCCcccCCCCccccCCCceeeeccHhHccCCccccceEEEEcCCC--CcccCCC-cEEEEE
Confidence            4689999999999999999999999999988889999999999999999999999999999765  5679875 899999


Q ss_pred             ecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCCCCceeEEEcCcCceeEEEEEeecCCc
Q 025298          106 TNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYFELVLISNVAGAG  185 (255)
Q Consensus       106 ~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~g~~~w~~v~v~n~~g~~  185 (255)
                      ||.||++++.|++|++||++++.|||||.+||.+||....|+|+|+||||+|+++|||+|+|++++||++|+|.|++|++
T Consensus        99 td~CP~~~~~~~~~~gwC~~~~~hFDLS~~AF~~iA~~~aGii~V~yRRVpC~~~G~i~f~v~g~sy~~~vlv~nv~G~g  178 (247)
T PLN00050         99 TNFCPPNLALPNNDGGWCNPPQQHFDLSQPVFQKIAQYKAGIVPVQYRRVACRKSGGIRFTINGHSYFNLVLITNVGGAG  178 (247)
T ss_pred             ecCCCCCcCcCccCCCcCCCCCcccccCHHHHHHHhhhcCCeeeeEEEEecCcCCCCeEEEEcCCceeEEEEEEEcCCCc
Confidence            99999999999999999998899999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeCcccCCCCCCCcEEeccCCC
Q 025298          186 SIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF  255 (255)
Q Consensus       186 ~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~~vip~~w~~G~~y~s~vqf  255 (255)
                      +|++|+|++++++|++|+|+||++|+.+.++.++||+||||+.+|+++++.||||++|++|++|++. ||
T Consensus       179 di~~V~ikg~~~~W~~M~R~wGa~W~~~~~l~g~~lsfRvt~~~G~~~~~~~V~Pa~W~~G~ty~~~-~f  247 (247)
T PLN00050        179 DIVAVSIKGSKSNWQAMSRNWGQNWQSNSYLNGQALSFKVTTSDGRTVISNNAAPSNWAFGQTYTGM-QF  247 (247)
T ss_pred             cEEEEEEecCCCCeeECccccCceeEccCCCCCCcEEEEEEecCCcEEEECceeCCCCCCCCeEecC-cC
Confidence            9999999998778999999999999998878878999999999999999999999999999999995 98

>PLN03023 Expansin-like B1; Provisional

Probab=100.00  E-value=1.9e-64  Score=446.81  Aligned_cols=212  Identities=28%  Similarity=0.613  Sum_probs=190.5

Q ss_pred             cCCCCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEE
Q 025298           24 FSPSGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTI  103 (255)
Q Consensus        24 ~~~~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v  103 (255)
                      ...++|.+++|||||++++.|+.+|||||+++..+.++.++||++ ++|++|.+||+||||+|.+   +++|.++ +|+|
T Consensus        20 ~~~~~W~~a~AT~Yg~~~g~gt~gGACGYg~~~~~~~g~~~aa~s-~Lf~~G~~CGaCy~irC~~---~~~C~~~-~v~V   94 (247)
T PLN03023         20 CKSQDFTYSRATYYGSPDCLGTPTGACGFGEYGRTVNGGNVAGVS-RLYRNGTGCGACYQVRCKA---PNLCSDD-GVNV   94 (247)
T ss_pred             hhcCCcccceEEEeCCCCCCCCCCccccCCccccCCCcceeeeeh-hhhcCCchhcccEEeecCC---CCccCCC-CeEE
Confidence            345569999999999999999999999999988788889999998 9999999999999999976   5789875 8999


Q ss_pred             EEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc-------ccCCccceeEEEEecCCCC-ceeEEEc--Cc-Cc
Q 025298          104 TATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI-------YRGGIVPVLYQRVPCKKPG-GVRFTIN--GR-DY  172 (255)
Q Consensus       104 ~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g-ni~~~v~--g~-~~  172 (255)
                      +|||.||.           +   +.|||||.+||.+||.       ...|+|+|+||||||.++| ||+|+|+  ++ ++
T Consensus        95 ~iTd~~~~-----------~---~~hFdLS~~AF~~iA~pg~~~~l~~aGiv~v~YrRVpC~~~G~~i~F~V~~~s~~p~  160 (247)
T PLN03023         95 VVTDYGEG-----------D---KTDFILSPRAYARLARPNMAAELFAYGVVDVEYRRIPCRYAGYNLFFKVHEHSRFPD  160 (247)
T ss_pred             EEEeCCCC-----------C---CCccccCHHHHHHHhCccccchhccCcEEEeEEEEEecccCCCceEEEEecCCCCCc
Confidence            99999985           3   5899999999999998       4679999999999999999 9999998  33 77


Q ss_pred             eeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeCCCCCCcceEEEE--EecCCcE-EEeCcccCCCCCCCcE
Q 025298          173 FELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSNAYLNGQSLSFKV--TTTDGET-RIFPNVVPSNWHFGQS  248 (255)
Q Consensus       173 w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~~~g~p~~vRv--Ts~~G~~-i~~~~vip~~w~~G~~  248 (255)
                      |++|+|.|++|+++|++||||+++ .+|++|+|+||++|+++.+|+| ||+||+  |..+|++ |++.||||++|++|++
T Consensus       161 yl~vlv~~vgG~GdI~~V~Ik~~~~~~W~~M~rnwGa~W~~~~~l~G-p~slrf~v~~~~g~~~vva~nViPa~Wk~G~T  239 (247)
T PLN03023        161 YLAIVMLYQAGQNDILAVEIWQEDCKEWRGMRKAYGAVWDMPNPPKG-PITLRFQVSGSAGQTWVQAKNVIPSDWKAGVA  239 (247)
T ss_pred             eEEEEEEEcCCCccEEEEEEEecCCCCceECccCCcceeEcCCCCCC-ceeEEEEEEeCCCcEEEEECceeCCCCCCCCE
Confidence            999999999999999999999965 6899999999999999988887 555555  4557754 8999999999999999


Q ss_pred             EeccCCC
Q 025298          249 FASSIQF  255 (255)
Q Consensus       249 y~s~vqf  255 (255)
                      |+++|||
T Consensus       240 Y~s~vq~  246 (247)
T PLN03023        240 YDSNIQL  246 (247)
T ss_pred             Eeccccc
Confidence            9999998

>PLN03024 Putative EG45-like domain containing protein 1; Provisional

Probab=99.96  E-value=3.1e-28  Score=196.05  Aligned_cols=102  Identities=32%  Similarity=0.637  Sum_probs=86.7

Q ss_pred             eEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCC--CCccccCCCeEEEEEec
Q 025298           30 TQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKS--DTRWCIKGTSVTITATN  107 (255)
Q Consensus        30 ~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~--~p~~C~~g~sv~v~V~D  107 (255)
                      .+|+||||++++     .||| |++   .+++.++||+|+++|++|..||+||||+|.++.  ++++|. +++|+|+|+|
T Consensus        22 ~~G~AT~Y~~~~-----~gAC-~~~---~~~g~~iaAls~~lf~~G~~CG~c~~V~C~~~~~~~~~~c~-gksV~V~VtD   91 (125)
T PLN03024         22 TPGIATFYTSYT-----PSAC-YRG---TSFGVMIAAASDSLWNNGRVCGKMFTVKCKGPRNAVPHPCT-GKSVTVKIVD   91 (125)
T ss_pred             cceEEEEeCCCC-----Cccc-cCC---CCCCCEeEEeCHHHcCCCcccCceEEEEECCCCcccccccc-CCeEEEEEEc
Confidence            379999998755     3899 444   346789999999999999999999999997642  245787 4799999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEE
Q 025298          108 FCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQR  154 (255)
Q Consensus       108 ~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~  154 (255)
                      +||+.          |.   .|||||++||++||++..|+|+|+|.+
T Consensus        92 ~CP~~----------C~---~~~DLS~~AF~~iA~~~aG~v~V~y~~  125 (125)
T PLN03024         92 HCPSG----------CA---STLDLSREAFAQIANPVAGIINIDYIP  125 (125)
T ss_pred             CCCCC----------CC---CceEcCHHHHHHhcCccCCEEEEEEeC
Confidence            99952          75   599999999999999999999999974

>COG4305 Endoglucanase C-terminal domain/subunit and related proteins [Carbohydrate transport and metabolism]

Probab=99.95  E-value=1.3e-26  Score=193.26  Aligned_cols=195  Identities=19%  Similarity=0.310  Sum_probs=157.6

Q ss_pred             CCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCC----ccCcceEEEEecCCCCCccccCCCeEE
Q 025298           27 SGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDG----ASCGQCYRIMCDYKSDTRWCIKGTSVT  102 (255)
Q Consensus        27 ~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~ev~c~~~~~p~~C~~g~sv~  102 (255)
                      ++-+.|.|||-+...    .+||=-...   .+-+..+.|+|+++-+-|    +.-|+.++|.+     |+    | +.+
T Consensus        28 d~~f~G~ATyTgsGY----sGGAflLDP---I~sd~eITAlNPaqlNlGGipAAmAGaYLrVqG-----PK----G-~TT   90 (232)
T COG4305          28 DDLFEGYATYTGSGY----SGGAFLLDP---IPSDMEITALNPAQLNLGGIPAAMAGAYLRVQG-----PK----G-KTT   90 (232)
T ss_pred             ccccceeEEEecccc----cCceEEecC---cCCcceeeecCHHHcccCCchhhhccceEEEEC-----CC----C-ceE
Confidence            355779999977533    367775443   344567999999988755    57999999987     44    4 678


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCCCCceeEEEc--CcCceeEEEEEe
Q 025298          103 ITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTIN--GRDYFELVLISN  180 (255)
Q Consensus       103 v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~--g~~~w~~v~v~n  180 (255)
                      |.|||..|+.           .  .+.||||+.||.+|+++.+|+|+|+||.|+-|..||+.+++|  ++.||.++||+|
T Consensus        91 VYVTDlYPeg-----------a--sGaLDLSpNAFakIGnm~qGrIpvqWrvv~aPvtGN~~YRiKeGSs~WWAAIQVRn  157 (232)
T COG4305          91 VYVTDLYPEG-----------A--SGALDLSPNAFAKIGNMKQGRIPVQWRVVKAPVTGNFTYRIKEGSSRWWAAIQVRN  157 (232)
T ss_pred             EEEecccccc-----------c--ccccccChHHHhhhcchhcCccceeEEEecccccccEEEEEecCCccceeeeeeec
Confidence            9999999994           3  479999999999999999999999999999999999999999  478999999999


Q ss_pred             ecCCcceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeC-cccCCCCC-CCcEEeccCCC
Q 025298          181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFP-NVVPSNWH-FGQSFASSIQF  255 (255)
Q Consensus       181 ~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~-~vip~~w~-~G~~y~s~vqf  255 (255)
                      +.  .||.++|+... ++|..|.+.+||+|.-.+ +..+|+.+|+||+.|++++.. -.+|..=. ---+-.++|||
T Consensus       158 H~--yPV~KlE~~qd-g~WinlpK~dYNhFVgT~-LG~~pL~~RmTDIRG~~l~DtlP~Lpk~asSKaY~V~G~VQF  230 (232)
T COG4305         158 HK--YPVMKLEYEQD-GKWINLPKMDYNHFVGTN-LGTGPLKVRMTDIRGKVLKDTLPKLPKSASSKAYTVPGHVQF  230 (232)
T ss_pred             cc--CceEEEEEecC-CeEeeccccccceeeccc-cCCCceEEEEeecccceeecccccccccccCCceeecceeec
Confidence            97  89999999874 689999999999998544 444599999999999999976 35553211 11234566776

>smart00837 DPBB_1 Rare lipoprotein A (RlpA)-like double-psi beta-barrel

Probab=99.95  E-value=7.1e-28  Score=182.81  Aligned_cols=87  Identities=69%  Similarity=1.367  Sum_probs=81.2

Q ss_pred             EEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccc
Q 025298           64 TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIY  143 (255)
Q Consensus        64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~  143 (255)
                      +||+|+++|++|.+||+||||+|.+.  |..|.++++|+|+|||+||+++..|+++++||++++.|||||.+||.+||++
T Consensus         1 taA~s~~lf~~G~~CG~Cy~v~C~~~--~~~C~~~~~V~V~vtd~CP~~~~~~~~~~~~C~~~~~hfDLS~~AF~~iA~~   78 (87)
T smart00837        1 TAALSTALFNNGASCGACYEIMCVDS--PKWCKPGGSITVTATNFCPPNYALSNDNGGWCNPPRKHFDLSQPAFEKIAQY   78 (87)
T ss_pred             CcccCHHHccCCccccceEEEEeCCC--CCcccCCCeEEEEEeccCCccccccccCCCccCCCCcCeEcCHHHHHHHhhh
Confidence            48999999999999999999999653  6789887799999999999999999999999998889999999999999999


Q ss_pred             cCCccceeE
Q 025298          144 RGGIVPVLY  152 (255)
Q Consensus       144 ~~G~v~i~~  152 (255)
                      ..|+|+|+|
T Consensus        79 ~~Gvi~v~y   87 (87)
T smart00837       79 KAGIVPVKY   87 (87)
T ss_pred             cCCEEeeEC
Confidence            999999987

Rare lipoprotein A (RlpA) contains a conserved region that has the double-psi beta-barrel (DPBB) fold. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli. The DPBB fold is often an enzymatic domain. The members of this family are quite diverse, and if catalytic this family may contain several different functions. Another example of this domain is found in the N terminus of pollen allergen.

>PLN00115 pollen allergen group 3; Provisional

Probab=99.91  E-value=3.1e-24  Score=170.87  Aligned_cols=88  Identities=22%  Similarity=0.453  Sum_probs=79.4

Q ss_pred             ceeEEEc--CcCceeEEEEEeecCCcceeEEEEEcCC-Ccee-ecccccCceEEeCC--CCCCcceEEEEEecCCcEEEe
Q 025298          162 GVRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGSS-TNWM-AMSRNWGANWQSNA--YLNGQSLSFKVTTTDGETRIF  235 (255)
Q Consensus       162 ni~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~-~m~r~~gn~W~~~~--~~~g~p~~vRvTs~~G~~i~~  235 (255)
                      ||+|+|+  +|++||++++ |.    +|.+|||++++ .+|+ +|+|+||+.|++++  +|+| ||+||+|+.+|+++++
T Consensus        25 ~v~F~V~~gSnp~yL~ll~-~~----dI~~V~Ik~~g~~~W~~~M~rswGavW~~~s~~pl~G-PlS~R~t~~~G~~~va   98 (118)
T PLN00115         25 EVTFKVGKGSSSTSLELVT-NV----AISEVEIKEKGAKDWVDDLKESSTNTWTLKSKAPLKG-PFSVRFLVKGGGYRVV   98 (118)
T ss_pred             ceEEEECCCCCcceEEEEE-eC----CEEEEEEeecCCCcccCccccCccceeEecCCCCCCC-ceEEEEEEeCCCEEEE
Confidence            9999999  4689997765 43    69999999986 6899 99999999999764  6787 9999999999999999


Q ss_pred             CcccCCCCCCCcEEeccCCC
Q 025298          236 PNVVPSNWHFGQSFASSIQF  255 (255)
Q Consensus       236 ~~vip~~w~~G~~y~s~vqf  255 (255)
                      +||||++|++|++|++++||
T Consensus        99 ~nViPa~Wk~G~tY~s~vq~  118 (118)
T PLN00115         99 DDVIPESFKAGSVYKTGIQV  118 (118)
T ss_pred             CceECCCCCCCCEEeccccC
Confidence            99999999999999999998

>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []

Probab=99.88  E-value=1.4e-22  Score=152.26  Aligned_cols=77  Identities=45%  Similarity=0.829  Sum_probs=63.9

Q ss_pred             eeEEEc--CcCceeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeC-CCCCCcceEEEEEecC-CcEEEeCc
Q 025298          163 VRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSN-AYLNGQSLSFKVTTTD-GETRIFPN  237 (255)
Q Consensus       163 i~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~-~~~~g~p~~vRvTs~~-G~~i~~~~  237 (255)
                      |+|+|+  +++||++|+|.|++|.++|++|||++++ .+|++|+|+||++|+++ .+++ +||+||||+.+ |++++++|
T Consensus         1 v~f~V~~gS~~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~~m~r~wGa~W~~~~~~~~-~pls~Rvts~~~G~~vv~~n   79 (82)
T PF01357_consen    1 VRFTVKGGSNPYYLAVLVKNVGGDGDIKAVEVKQSGSGNWIPMKRSWGAVWQIDSNPPG-GPLSFRVTSGDSGQTVVADN   79 (82)
T ss_dssp             EEEEE-TT-BTTEEEEEEEECCTTS-EEEEEEEETTSSS-EE-EEECTTEEEEE-SS---SSEEEEEEETTTSEEEEEEE
T ss_pred             CEEEECCCCCCcEEEEEEEEcCCCccEEEEEEEeCCCCCceEeecCcCceEEECCCCcC-CCEEEEEEEcCCCeEEEEec
Confidence            689998  4699999999999999999999999877 56999999999999998 5555 59999999977 99999999


Q ss_pred             ccC
Q 025298          238 VVP  240 (255)
Q Consensus       238 vip  240 (255)
                      |||
T Consensus        80 ViP   82 (82)
T PF01357_consen   80 VIP   82 (82)
T ss_dssp             EE-
T ss_pred             ccC
Confidence            998

They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.

>PF03330 DPBB_1: Rare lipoprotein A (RlpA)-like double-psi beta-barrel; InterPro: IPR009009 Beta barrels are commonly observed in protein structures

Probab=99.78  E-value=3.4e-19  Score=132.22  Aligned_cols=76  Identities=36%  Similarity=0.746  Sum_probs=61.1

Q ss_pred             EEEechhccCCCccCcceEEEEecCCCC-CccccCC-CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcc
Q 025298           64 TAALSTALFNDGASCGQCYRIMCDYKSD-TRWCIKG-TSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIG  141 (255)
Q Consensus        64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~-p~~C~~g-~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia  141 (255)
                      +||++..+|++|.+||+||+++|..... ...|..+ ++|+|+|+|+||+           |.  ..|||||+.||++||
T Consensus         1 t~a~~~~~y~~g~~cG~~~~~~~~~~a~~~~~~~~~~ksV~v~V~D~Cp~-----------~~--~~~lDLS~~aF~~la   67 (78)
T PF03330_consen    1 TAAGSATWYDNGTACGQCYQVTCLTAASATGTCKVGNKSVTVTVVDRCPG-----------CP--PNHLDLSPAAFKALA   67 (78)
T ss_dssp             EEEE-HHHHGGGTTTT-EEEEEE---SSTT--BESEECEEEEEEEEE-TT-----------SS--SSEEEEEHHHHHHTB
T ss_pred             CeEEEhhhcCCCCcCCCeeeccccccCCccceEEecCCeEEEEEEccCCC-----------Cc--CCEEEeCHHHHHHhC
Confidence            5899999999999999999999933210 1127653 8999999999998           86  489999999999999


Q ss_pred             cccCCccceeE
Q 025298          142 IYRGGIVPVLY  152 (255)
Q Consensus       142 ~~~~G~v~i~~  152 (255)
                      .++.|+++|+|
T Consensus        68 ~~~~G~i~V~w   78 (78)
T PF03330_consen   68 DPDAGVIPVEW   78 (78)
T ss_dssp             STTCSSEEEEE
T ss_pred             CCCceEEEEEC
Confidence            99999999998

They are classified in terms of two integral parameters: the number of strands in the sheet, n, and the shear number, S, a measure of the stagger of the strands in the beta-sheet. These two parameters have been shown to determine the major geometrical features of beta-barrels. Six-stranded beta-barrels with a pseudo-twofold axis are found in several proteins. One involving parallel strands forming two psi structures is known as the double-psi barrel. The first psi structure consists of the loop connecting strands beta1 and beta2 (a 'psi loop') and the strand beta5, whereas the second psi structure consists of the loop connecting strands beta4 and beta5 and the strand beta2. All the psi structures in double-psi barrels have a unique handedness, in that beta1 (beta4), beta2 (beta5) and the loop following beta5 (beta2) form a right-handed helix. The unique handedness may be related to the fact that the twisting angle between the parallel pair of strands is always larger than that between the antiparallel pair [].; PDB: 1N10_B 3D30_A 2BH0_A 2HCZ_X.

>PF00967 Barwin: Barwin family; InterPro: IPR001153 Barwin is a basic protein isolated from aqueous extracts of barley seeds

Probab=99.06  E-value=1.2e-10  Score=91.52  Aligned_cols=59  Identities=29%  Similarity=0.589  Sum_probs=44.3

Q ss_pred             CccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc----ccCCccce
Q 025298           75 GASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI----YRGGIVPV  150 (255)
Q Consensus        75 g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~----~~~G~v~i  150 (255)
                      -..||+|++|+.+..        |++++|+|+|+|+.                ++|||.+.+|.+|-.    ...|.+.|
T Consensus        57 q~~CGkClrVTNt~t--------ga~~~~RIVDqCsn----------------GGLDld~~vF~~iDtdG~G~~~Ghl~V  112 (119)
T PF00967_consen   57 QDSCGKCLRVTNTAT--------GAQVTVRIVDQCSN----------------GGLDLDPTVFNQIDTDGQGYAQGHLIV  112 (119)
T ss_dssp             GGGTT-EEEEE-TTT----------EEEEEEEEE-SS----------------SSEES-SSSHHHH-SSSHHHHHTEEEE
T ss_pred             cccccceEEEEecCC--------CcEEEEEEEEcCCC----------------CCcccChhHHhhhccCCcccccceEEE
Confidence            468999999998765        78999999999886                589999999999952    36789999


Q ss_pred             eEEEEec
Q 025298          151 LYQRVPC  157 (255)
Q Consensus       151 ~~r~V~C  157 (255)
                      +|++|+|
T Consensus       113 ~y~fV~C  119 (119)
T PF00967_consen  113 DYEFVDC  119 (119)
T ss_dssp             EEEEE--
T ss_pred             EEEEEcC
Confidence            9999999

It is 125 amino acids in length, and contains six cysteine residues that combine to form three disulphide bridges [, ]. Comparative analysis shows the sequence to be highly similar to a 122 amino acid stretch in the C-terminal of the products of two wound-induced genes (win1 and win2) from potato, the product of the hevein gene of rubber trees, and pathogenesis-related protein 4 from tobacco. The high levels of similarity to these proteins, and their ability to bind saccharides, suggest that the barwin domain may be involved in a common defence mechanism in plants.; GO: 0042742 defense response to bacterium, 0050832 defense response to fungus; PDB: 1BW3_A 1BW4_A.

>PF07249 Cerato-platanin: Cerato-platanin; InterPro: IPR010829 Cerato-platanin (CP) is the first member of the cerato-platanin family

Probab=98.15  E-value=1.1e-05  Score=64.59  Aligned_cols=66  Identities=20%  Similarity=0.416  Sum_probs=47.0

Q ss_pred             eEEEech-hccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcc
Q 025298           63 STAALST-ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIG  141 (255)
Q Consensus        63 ~~aA~s~-~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia  141 (255)
                      .|.+... +-| |...||.|+||+-.          |++|.|..+|.-+                 ..|+|+.+||++|.
T Consensus        44 ~IGg~~~V~gW-nS~~CGtC~~lty~----------g~si~vlaID~a~-----------------~gfnis~~A~n~LT   95 (119)
T PF07249_consen   44 YIGGAPAVAGW-NSPNCGTCWKLTYN----------GRSIYVLAIDHAG-----------------GGFNISLDAMNDLT   95 (119)
T ss_dssp             SEEEETT--ST-T-TTTT-EEEEEET----------TEEEEEEEEEE-S-----------------SSEEE-HHHHHHHH
T ss_pred             eeccccccccC-CCCCCCCeEEEEEC----------CeEEEEEEEecCC-----------------CcccchHHHHHHhc
Confidence            3555554 346 45789999999982          5899999999733                 46999999999997


Q ss_pred             c---ccCCccceeEEEEe
Q 025298          142 I---YRGGIVPVLYQRVP  156 (255)
Q Consensus       142 ~---~~~G~v~i~~r~V~  156 (255)
                      +   ...|+|+++|++|+
T Consensus        96 ~g~a~~lG~V~a~~~qV~  113 (119)
T PF07249_consen   96 NGQAVELGRVDATYTQVD  113 (119)
T ss_dssp             TS-CCCC-EEE-EEEEE-
T ss_pred             CCcccceeEEEEEEEEcC
Confidence            5   36799999999997

It is produced by the Ascomycete Ceratocystis fimbriata f. sp. platani and causes the severe plant disease: canker stain. This protein occurs in the cell wall of the fungus and is involved in the host-plane interaction and induces both cell necrosis and phytoalexin synthesis which is one of the first plant defense-related events. CP, like other fungal surface proteins, is able to self assemble in vitro []. CP is a 120 amino acid protein, containing 40% hydrophobic residues and two S-S bridges. It contains four cysteine residues that form two disulphide bonds []. The N-terminal region of CP is very similar to cerato-ulmin, a phytotoxic protein produced by the Ophiostoma species belonging to the hydrophobin family, which also self-assembles []. This entry also includes other precursor proteins.; PDB: 2KQA_A 3M3G_A.

>TIGR00413 rlpA rare lipoprotein A

Probab=98.00  E-value=6.7e-05  Score=65.27  Aligned_cols=96  Identities=20%  Similarity=0.167  Sum_probs=69.8

Q ss_pred             EEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCC
Q 025298           32 AHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPP  111 (255)
Q Consensus        32 g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~  111 (255)
                      |.|+|||..-..  ...|.|=.-  .  ...|+||=.+      ...|...+|+...+        |++|+|+|.|++|-
T Consensus         1 G~ASwYg~~f~G--~~TAnGe~y--~--~~~~tAAHkt------LPlgT~V~VtNl~n--------grsviVrVnDRGPf   60 (208)
T TIGR00413         1 GLASWYGPKFHG--RKTANGEVY--N--MKALTAAHKT------LPFNTYVKVTNLHN--------NRSVIVRINDRGPF   60 (208)
T ss_pred             CEEeEeCCCCCC--CcCCCCeec--C--CCcccccccc------CCCCCEEEEEECCC--------CCEEEEEEeCCCCC
Confidence            679999864210  123444211  1  1124555443      25889999998765        79999999999996


Q ss_pred             CCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCCC
Q 025298          112 NFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKP  160 (255)
Q Consensus       112 ~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~  160 (255)
                      .             +.--+|||..|+.+|+-...|+.+|+.+.+.....
T Consensus        61 ~-------------~gRiIDLS~aAA~~Lg~~~~G~a~V~vevl~~~~~   96 (208)
T TIGR00413        61 S-------------DDRIIDLSHAAAREIGLISRGVGQVRIEVLHVAKN   96 (208)
T ss_pred             C-------------CCCEEECCHHHHHHcCCCcCceEEEEEEEEecCCC
Confidence            2             23689999999999999999999999999988754

This is a family of prokaryotic proteins with unknown function. Lipoprotein annotation based on the presence of consensus lipoprotein signal sequence. Included in this family is the E. coli putative lipoprotein rlpA.

>COG0797 RlpA Lipoproteins [Cell envelope biogenesis, outer membrane]

Probab=97.82  E-value=0.00014  Score=64.27  Aligned_cols=60  Identities=20%  Similarity=0.239  Sum_probs=52.2

Q ss_pred             CcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEec
Q 025298           78 CGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPC  157 (255)
Q Consensus        78 CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C  157 (255)
                      =|.-.+|+..++        |++|+|+|.|++|-            .. .-.||||..|+++|+-...|+.+|..+.+.+
T Consensus       119 ~~t~v~VtNl~N--------grsvvVRINDRGPf------------~~-gRiIDlS~aAA~~l~~~~~G~a~V~i~~l~~  177 (233)
T COG0797         119 LPTYVRVTNLDN--------GRSVVVRINDRGPF------------VS-GRIIDLSKAAADKLGMIRSGVAKVRIEVLGV  177 (233)
T ss_pred             CCCEEEEEEccC--------CcEEEEEEeCCCCC------------CC-CcEeEcCHHHHHHhCCccCceEEEEEEEecc
Confidence            356789998776        79999999999995            32 3689999999999999999999999999997


Q ss_pred             C
Q 025298          158 K  158 (255)
Q Consensus       158 ~  158 (255)
                      .
T Consensus       178 ~  178 (233)
T COG0797         178 A  178 (233)
T ss_pred             c
Confidence            6

>PRK10672 rare lipoprotein A; Provisional

Probab=97.27  E-value=0.0031  Score=59.32  Aligned_cols=59  Identities=14%  Similarity=0.124  Sum_probs=48.6

Q ss_pred             cCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEe
Q 025298           77 SCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVP  156 (255)
Q Consensus        77 ~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~  156 (255)
                      --|...+|+...+        |++|+|+|.|++|-.             +.--||||..|+++|+-...+.|+|+.-.|.
T Consensus       114 Plps~vrVtNl~n--------grsvvVrVnDRGP~~-------------~gRiiDLS~aAA~~Lg~~~~~~V~ve~i~v~  172 (361)
T PRK10672        114 PIPSYVRVTNLAN--------GRMIVVRINDRGPYG-------------PGRVIDLSRAAADRLNTSNNTKVRIDPIIVA  172 (361)
T ss_pred             CCCCEEEEEECCC--------CcEEEEEEeCCCCCC-------------CCCeeEcCHHHHHHhCCCCCceEEEEEEeeC
Confidence            4688999998775        799999999999962             2368999999999998777777777777763

>PF02015 Glyco_hydro_45: Glycosyl hydrolase family 45; InterPro: IPR000334 O-Glycosyl hydrolases 3

Probab=90.72  E-value=0.31  Score=42.43  Aligned_cols=54  Identities=26%  Similarity=0.380  Sum_probs=30.7

Q ss_pred             EEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChh
Q 025298           64 TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYP  135 (255)
Q Consensus        64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~  135 (255)
                      +||.+-.-......|++|||++=+++.     ..||+.+|++++.=-.            . ..+||||..+
T Consensus        70 faA~~~~G~~e~~~Cc~Cy~LtFt~g~-----l~GKkmiVQ~tNtG~d------------l-g~n~FDl~iP  123 (201)
T PF02015_consen   70 FAAASITGGSESSWCCACYELTFTSGP-----LKGKKMIVQVTNTGGD------------L-GSNQFDLAIP  123 (201)
T ss_dssp             EEEEE-TT--HHHHTT-EEEEEE-SST-----TTT-EEEEEEEEE-TT------------T-TTTEEEEE-T
T ss_pred             eeeeeecCCCCCCcccceEEEEEcCCC-----cCCCEeEEEecccCCC------------C-CCCeEEEEeC
Confidence            455552211122679999999987641     1379999999975111            1 3589999854

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 45 GH45 from CAZY comprises enzymes with only one known activity; endoglucanase (3.2.1.4 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes such as endoglucanases, cellobiohydrolases (3.2.1.91 from EC) (exoglucanases), or xylanases (3.2.1.8 from EC) [, ]. Fungi and bacteria produce a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family K or as the glycosyl hydrolases family 45 []. The best conserved regions in these enzymes is located in the N-terminal section. It contains an aspartic acid residue which has been shown [] to act as a nucleophile in the catalytic mechanism. This also has several cysteines that are involved in forming disulphide bridges.; GO: 0008810 cellulase activity, 0005975 carbohydrate metabolic process; PDB: 1OA7_A 1OA9_A 1L8F_A 1HD5_A 4ENG_A 3ENG_A 2ENG_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	255
2hcz_X	245	Crystal Structure Of Expb1 (Zea M 1), A Beta-Expans		1e-18
1n10_A	241	Crystal Structure Of Phl P 1, A Major Timothy Grass		4e-13

>pdb|2HCZ|X Chain X, Crystal Structure Of Expb1 (Zea M 1), A Beta-Expansin And Group-1 Pollen Allergen From Maize Length = 245

Iteration: 1
 Score = 90.1 bits (222), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 71/243 (29%), Positives = 106/243 (43%), Gaps = 33/243 (13%)
Query: 29  WTQAHATFYGGSDASGTM--GGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMC 86
           W  A AT+YG  + +G    GGACG  N+    Y   TA  +  +F DG  CG CY + C
Sbjct: 19  WLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRC 78
Query: 87  DYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIG----- 141
             K +      G  VT+  T+      A              HFD++  A+  +      
Sbjct: 79  KEKPEC----SGNPVTVYITDMNYEPIA------------PYHFDLSGKAFGSLAKPGLN 122
Query: 142 --IYRGGIVPVLYQRVPCKKPGGVRFTINGRD----YFELVLISNVAGAGSIKSAYIKGS 195
             I   GI+ V ++RV CK P G +   +        +  VL+  VA  G I    I+  
Sbjct: 123 DKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGDIVLMEIQDK 182
Query: 196 -STNWMAMSRNWGANWQSN--AYLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFASS 252
            S  W  M  +WGA W+ +    L G   S ++T+  G+  I  +V+P+NW     + S+
Sbjct: 183 LSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWRPDAVYTSN 241
Query: 253 IQF 255
           +QF
Sbjct: 242 VQF 244

>pdb|1N10|A Chain A, Crystal Structure Of Phl P 1, A Major Timothy Grass Pollen Allergen Length = 241

Iteration: 1
 Score = 71.6 bits (174), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 102/241 (42%), Gaps = 35/241 (14%)
Query: 29  WTQAHATFYGGSDASGTM--GGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMC 86
           W  A +T+YG    +G    GGACGY ++    +   T   +T +F  G  CG C+ I C
Sbjct: 19  WLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKC 78
Query: 87  DYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDM---AYPAWQKIG-- 141
              +    C  G  V +  T+          DN     P   HFD+   A+ A  K G  
Sbjct: 79  ---TKPEAC-SGEPVVVHITD----------DNEEPIAP--YHFDLSGHAFGAMAKKGDE 122
Query: 142 --IYRGGIVPVLYQRVPCKKPGGVRFTIN-----GRDYFELVLISNVAGAGSIKSAYIKG 194
             +   G + + ++RV CK P G + T +       +Y  L L+  V G G + +  IK 
Sbjct: 123 QKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLAL-LVKYVNGDGDVVAVDIKE 181
Query: 195 SSTN-WMAMSRNWGANWQSNA--YLNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQSFAS 251
              + W+ +  +WGA W+ +    L G   + + TT  G      +V+P  W    S+ S
Sbjct: 182 KGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 240
Query: 252 S 252
Sbjct: 241 K 241

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	255
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	7e-71
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	6e-65
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	1e-59
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	1e-28
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	1e-27
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	4e-27
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	4e-24

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays} Length = 245

 Score =  216 bits (552), Expect = 7e-71
 Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 31/251 (12%)

Query: 20  SIKAFSPSGWTQAHATFYGGSDASGT--MGGACGYGNLYSTGYGISTAALSTALFNDGAS 77
           +I       W  A AT+YG  + +G    GGACG  N+    Y   TA  +  +F DG  
Sbjct: 10  NITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKG 69

Query: 78  CGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAW 137
           CG CY + C             +V IT  N+ P                  HFD++  A+
Sbjct: 70  CGSCYEVRCK--EKPECSGNPVTVYITDMNYEPIA--------------PYHFDLSGKAF 113

Query: 138 QKIG-------IYRGGIVPVLYQRVPCKKPGGVRFTIN----GRDYFELVLISNVAGAGS 186
             +        I   GI+ V ++RV CK P G +   +        +  VL+  VA  G 
Sbjct: 114 GSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEKGCNPNYLAVLVKYVADDGD 173

Query: 187 IKSAYIKGSST-NWMAMSRNWGANWQSNAYLN-GQSLSFKVTTTDGETRIFPNVVPSNWH 244
           I    I+   +  W  M  +WGA W+ +         S ++T+  G+  I  +V+P+NW 
Sbjct: 174 IVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKGPFSIRLTSESGKKVIAKDVIPANWR 233

Query: 245 FGQSFASSIQF 255
               + S++QF
Sbjct: 234 PDAVYTSNVQF 244

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3 Length = 241

 Score =  201 bits (512), Expect = 6e-65
 Identities = 58/247 (23%), Positives = 96/247 (38%), Gaps = 31/247 (12%)

Query: 20  SIKAFSPSGWTQAHATFYGGSDASGTM--GGACGYGNLYSTGYGISTAALSTALFNDGAS 77
           +I A     W  A +T+YG    +G    GGACGY ++    +   T   +T +F  G  
Sbjct: 10  NITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRG 69

Query: 78  CGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAW 137
           CG C+ I C        C  G  V +  T+                     HFD++  A+
Sbjct: 70  CGSCFEIKCT---KPEAC-SGEPVVVHITDDNE------------EPIAPYHFDLSGHAF 113

Query: 138 QKI-------GIYRGGIVPVLYQRVPCKKPGGVRFTIN----GRDYFELVLISNVAGAGS 186
             +        +   G + + ++RV CK P G + T +        +  +L+  V G G 
Sbjct: 114 GAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSNPNYLALLVKYVNGDGD 173

Query: 187 IKSAYIK-GSSTNWMAMSRNWGANWQSNAYLN-GQSLSFKVTTTDGETRIFPNVVPSNWH 244
           + +  IK      W+ +  +WGA W+ +         + + TT  G      +V+P  W 
Sbjct: 174 VVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAEDVIPEGWK 233

Query: 245 FGQSFAS 251
              S+ S
Sbjct: 234 ADTSYES 240

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A Length = 208

 Score =  186 bits (474), Expect = 1e-59
 Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 45/239 (18%)

Query: 28  GWTQAH---ATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDG----ASCGQ 80
            +   H   AT+ G     G  GGA     + S        A++ A  N G    A  G 
Sbjct: 2   AYDDLHEGYATYTGS----GYSGGAFLLDPIPSDME---ITAINPADLNYGGVKAALAGS 54

Query: 81  CYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKI 140
              +                 T+  T+  P                    D++  A++KI
Sbjct: 55  YLEVEG----------PKGKTTVYVTDLYPE-----------GAR--GALDLSPNAFRKI 91

Query: 141 GIYRGGIVPVLYQRVPCKKPGGVRFTING--RDYFELVLISNVAGAGSIKSAYIKGSSTN 198
           G  + G + + ++ V     G   + I      ++  + + N      +     +     
Sbjct: 92  GNMKDGKINIKWRVVKAPITGNFTYRIKEGSSRWWAAIQVRNHKYP--VMKMEYEKDGK- 148

Query: 199 WMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGET--RIFPNVVPSNWHFGQSFASSIQF 255
           W+ M +    ++ S       SL  ++T   G+      P +  S      +    +QF
Sbjct: 149 WINMEKMDYNHFVSTNLG-TGSLKVRMTDIRGKVVKDTIPKLPESGTSKAYTVPGHVQF 206

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense} Length = 108

 Score =  104 bits (260), Expect = 1e-28
 Identities = 15/104 (14%), Positives = 38/104 (36%), Gaps = 8/104 (7%)

Query: 152 YQRVPCKKPGGVRFTING--RDYFELVLISNVAGAGSIKSAYIKGS-STNWMAMSRNWGA 208
           +      +   V FT+         ++ I       S+    ++   S  W  +++  G 
Sbjct: 7   HHHGSAVQ---VTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GN 62

Query: 209 NWQSNAYLNGQ-SLSFKVTTTDGETRIFPNVVPSNWHFGQSFAS 251
            W+  +        +F+  +  G   +F  V+P+ +  G+++  
Sbjct: 63  VWEVKSSKPLVGPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKP 106

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A Length = 96

 Score =  100 bits (251), Expect = 1e-27
 Identities = 24/93 (25%), Positives = 42/93 (45%), Gaps = 6/93 (6%)

Query: 163 VRFTIN-GRDYFELVLISNVAGAGSIKSAYIKGS-STNWMAMSRNWGANW--QSNAYLNG 218
           V FT+  G +   L ++    G  ++    ++   S  W+AM++  G  W   S   L G
Sbjct: 4   VTFTVEKGSNEKHLAVLVKYEG-DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQG 62

Query: 219 QSLSFKVTTTDGETRIFPNVVPSNWHFGQSFAS 251
              +F+  T  G   +F +VVP  +  G ++A 
Sbjct: 63  -PFNFRFLTEKGMKNVFDDVVPEKYTIGATYAP 94

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} PDB: 3ft9_A Length = 100

 Score =   99 bits (249), Expect = 4e-27
 Identities = 16/97 (16%), Positives = 37/97 (38%), Gaps = 5/97 (5%)

Query: 163 VRFTING--RDYFELVLISNVAGAGSIKSAYIKGS-STNWMAMSRNWGANWQSNAYLNGQ 219
           V FT+         ++ I       S+    ++   S  W  +++  G  W+  +     
Sbjct: 4   VTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKPLV 62

Query: 220 -SLSFKVTTTDGETRIFPNVVPSNWHFGQSFASSIQF 255
              +F+  +  G   +F  V+P+ +  G+++    Q 
Sbjct: 63  GPFNFRFMSKGGMRNVFDEVIPTAFSIGKTYKPEEQE 99

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1 Length = 181

 Score = 94.6 bits (234), Expect = 4e-24
 Identities = 37/172 (21%), Positives = 50/172 (29%), Gaps = 35/172 (20%)

Query: 27  SGWTQAHATFYGGSDASGTMGGACGYGNL-----YSTGYGISTAALSTALFND------G 75
           +G + A  T Y  S       GACG G       +    G   AA S   F+       G
Sbjct: 12  NGKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCG 66

Query: 76  ASCGQCYRIMCDYKSDTRWC---IKGTSVTITATNFCPPNFALPSDNGGWCNPPRQ---- 128
             CGQC ++               +G S T   TN CP  +     N  WCN   Q    
Sbjct: 67  QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNIYP----NQDWCNQGSQYGGH 122

Query: 129 -------HFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYF 173
                  H D+     Q +           ++ V C               +
Sbjct: 123 NKYGYELHLDLENGRSQ-VTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMY 173

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	255
2hcz_X	245	Beta-expansin 1A; domain 1 is A beta barrel and do	100.0
1n10_A	241	PHL P I, pollen allergen PHL P 1; plant allergen,	100.0
3d30_A	208	YOAJ, expansin like protein; peptidoglycan associa	100.0
1wc2_A	181	Endoglucanase; hydrolase, cellulase, cellulose, do	99.98
3ft1_A	100	PHL P 3 allergen; beta-barrel; 1.79A {Phleum prate	99.96
2jnz_A	108	PHL P 3 allergen; timothy grass pollen; NMR {Phleu	99.95
1bmw_A	96	PHL P II, pollen allergen PHL P2; allergy, immunog	99.92
1bw3_A	125	Barwin, basic barley SEED protein; lectin; NMR {Ho	99.68
4avr_A	95	PA4485; unknown function, GRAM-negative bacteria,	99.29
2kqa_A	129	Cerato-platanin; elicitor, secreted, toxin; NMR {C	98.13
3sul_A	122	Cerato-platanin-like protein; double PSI beta barr	97.99
3m3g_A	120	EPL1 protein; fungal, plant defense, fungus, polys	97.95
3suj_A	127	Cerato-platanin 1; double PSI beta barrel, unknown	97.89
3suk_A	125	Cerato-platanin-like protein; double PSI beta barr	97.81
3sum_A	136	Cerato-platanin-like protein; double PSI beta barr	97.77
2eng_A	210	Endoglucanase V; cellulose degradation, hydrolase	95.07

>2hcz_X Beta-expansin 1A; domain 1 is A beta barrel and domain 2 is A immunoglobulin L sandwich, allergen; HET: NAG MAN FCA; 2.75A {Zea mays}

Probab=100.00  E-value=4e-65  Score=452.25  Aligned_cols=218  Identities=32%  Similarity=0.609  Sum_probs=199.1

Q ss_pred             ccccCCCCeeEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCC
Q 025298           21 IKAFSPSGWTQAHATFYGGSDASGT--MGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKG   98 (255)
Q Consensus        21 ~~~~~~~~~~~g~aT~Yg~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g   98 (255)
                      +.....++|+.|+||||+.+++.++  .+|||||++++..|++.++||+|+++|++|..||+||||+|.+.   ..|.+ 
T Consensus        11 ~~~~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~p~~~~~aAls~~lf~~G~~CG~Cy~V~c~~~---~~C~~-   86 (245)
T 2hcz_X           11 ITTNYNGKWLTARATWYGQPNGAGAPDNGGACGIKNVNLPPYSGMTACGNVPIFKDGKGCGSCYEVRCKEK---PECSG-   86 (245)
T ss_dssp             CCSCCCCCCEEEEEEECSCTTSCSSTTSCCTTCCCCTTSTTTTTCEEEECHHHHGGGTSTTCEEEEECCSS---SSBCS-
T ss_pred             CCcccCCceeeeEEEEeCCCCCCCcCCCCccCCCCCCCcCCCCCEEEEeCHHHcCCchhcCCeEEEEeCCC---CccCC-
Confidence            3344467899999999999888777  78999999988788999999999999999999999999999764   46985 


Q ss_pred             CeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc-------ccCCccceeEEEEecCCCC--ceeEEEc-
Q 025298           99 TSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI-------YRGGIVPVLYQRVPCKKPG--GVRFTIN-  168 (255)
Q Consensus        99 ~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g--ni~~~v~-  168 (255)
                      ++|+|+|||+||+            .++..|||||++||.+||+       .+.|+|+|+||||+|+++|  ||+|+|+ 
T Consensus        87 ~sv~V~VtD~C~C------------~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~ni~f~v~~  154 (245)
T 2hcz_X           87 NPVTVYITDMNYE------------PIAPYHFDLSGKAFGSLAKPGLNDKIRHCGIMDVEFRRVRCKYPAGQKIVFHIEK  154 (245)
T ss_dssp             SCEEEEEEEECCC------------TTSSSEEEECHHHHHHTBCTTCHHHHTTTCCEEEEEEEECCCCSTTCCCEEEECC
T ss_pred             CCEEEEEEeccCC------------CCCCccEEcCHHHHHHHhccccccccccCCEEEEEEEEEecCCCCCCcEEEEEcC
Confidence            6899999999984            3357999999999999999       6899999999999999983  7999999 


Q ss_pred             -CcCceeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeCCC--CCCcceEEEEEecCCcEEEeCcccCCCCC
Q 025298          169 -GRDYFELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSNAY--LNGQSLSFKVTTTDGETRIFPNVVPSNWH  244 (255)
Q Consensus       169 -g~~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~--~~g~p~~vRvTs~~G~~i~~~~vip~~w~  244 (255)
                       +++||++|+|.|++|+++|++|||++++ .+|++|+|+|||+|+.++.  +.+ ||+||||+.+||+|++.||||++|+
T Consensus       155 Gs~~~~~avlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~~G~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~  233 (245)
T 2hcz_X          155 GCNPNYLAVLVKYVADDGDIVLMEIQDKLSAEWKPMKLSWGAIWRMDTAKALKG-PFSIRLTSESGKKVIAKDVIPANWR  233 (245)
T ss_dssp             CCSSSCCCEEEECCCTTCCEEEEEBCCSSSCSCBCCEEEETTEEECSCCSSCCS-SCCEEEEETTSCEEEESCSCCSSCC
T ss_pred             CCCcceEEEEEEecCCCCCEEEEEEEeCCCCceeECccCCCCEEEECCCCCCCC-CEEEEEEEeCCcEEEEeeeecCCCC
Confidence             6899999999999999999999999987 4899999999999999865  666 9999999999999999999999999


Q ss_pred             CCcEEeccCCC
Q 025298          245 FGQSFASSIQF  255 (255)
Q Consensus       245 ~G~~y~s~vqf  255 (255)
                      +|++|++++||
T Consensus       234 ~g~ty~~~~qf  244 (245)
T 2hcz_X          234 PDAVYTSNVQF  244 (245)
T ss_dssp             TTCEEECSCCC
T ss_pred             CCCEEeCcccc
Confidence            99999999998

>1n10_A PHL P I, pollen allergen PHL P 1; plant allergen, expansin, immunoglobulin-like fold, PSI beta barrel, structural genomics; HET: NAG; 2.90A {Phleum pratense} SCOP: b.7.3.1 b.52.1.3

Probab=100.00  E-value=2.5e-64  Score=446.06  Aligned_cols=212  Identities=27%  Similarity=0.574  Sum_probs=188.0

Q ss_pred             cCCCCeeEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeE
Q 025298           24 FSPSGWTQAHATFYGGSDASGT--MGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSV  101 (255)
Q Consensus        24 ~~~~~~~~g~aT~Yg~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv  101 (255)
                      ...++|+.|+||||++++++|+  .+|||||++++..|++.++||+|+++|++|..||+||||+|.+.   ..|.+ ++|
T Consensus        14 ~~~~~w~~g~AT~Yg~~~~~gt~~~gGACGyg~~~~~~~g~~~aAls~~lf~~G~~CG~CyeV~c~~~---~~C~~-~~v   89 (241)
T 1n10_A           14 TYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKP---EACSG-EPV   89 (241)
T ss_dssp             BCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSS---TTBCS-CCE
T ss_pred             cccCCceeeEEEEeCCCCCCCcCCCCeeCCCCCcCcCCCCcEEEEeCHHHccCcccCCCeEEEEeCCC---CccCC-CCE
Confidence            3367899999999999887776  78999999988888999999999999999999999999999765   46986 589


Q ss_pred             EEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc-------ccCCccceeEEEEecCCCC--ceeEEEc--Cc
Q 025298          102 TITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI-------YRGGIVPVLYQRVPCKKPG--GVRFTIN--GR  170 (255)
Q Consensus       102 ~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~-------~~~G~v~i~~r~V~C~~~g--ni~~~v~--g~  170 (255)
                      +|+|||+|+            |.++..|||||++||.+||+       ++.|+|+|+||||+|+++|  ||+|+|+  ++
T Consensus        90 ~V~VtD~C~------------C~~~~~hfDLS~~AF~~iA~~g~~~~L~~~Gii~V~yrrV~C~~~gg~~i~f~v~~Gs~  157 (241)
T 1n10_A           90 VVHITDDNE------------EPIAPYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEGTKVTFHVEKGSN  157 (241)
T ss_dssp             EEEEEEECS------------SCSSSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTTCCCEEEECTTCB
T ss_pred             EEEEeEecC------------CCCCCcceecCHHHHHHhhccCcccccccCCEEEEEEEEEeCCCCCCCceEEEEcCCCC
Confidence            999999996            65557999999999999999       7899999999999999984  8999999  68


Q ss_pred             CceeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeCCC--CCCcceEEEEEecCCcEEEeCcccCCCCCCCc
Q 025298          171 DYFELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSNAY--LNGQSLSFKVTTTDGETRIFPNVVPSNWHFGQ  247 (255)
Q Consensus       171 ~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~--~~g~p~~vRvTs~~G~~i~~~~vip~~w~~G~  247 (255)
                      +||++|+|.|++|.++|++|||++++ ++|++|+|+|||+|+++..  +.+ ||+||||+.+||+|+++||||++|++|+
T Consensus       158 ~~~~~vlv~n~~g~g~V~~V~ik~~~~~~W~~m~r~wG~~W~~~~~~~l~g-pls~RvT~~~G~~v~~~nViP~~w~~g~  236 (241)
T 1n10_A          158 PNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTG-PFTVRYTTEGGTKTEAEDVIPEGWKADT  236 (241)
T ss_dssp             TTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCS-CEEEEEEESSSCEEEEEEEECSSCCSSE
T ss_pred             cceEEEEEEecCCCCCEEEEEEEeCCCCCeEECccCcCcEEEeCCCCCCCC-CEEEEEEEeCCcEEEEccccCCCCCCCC
Confidence            99999999999999999999999987 6899999999999998864  676 9999999999999999999999999999


Q ss_pred             EEecc
Q 025298          248 SFASS  252 (255)
Q Consensus       248 ~y~s~  252 (255)
                      +|+++
T Consensus       237 ty~~~  241 (241)
T 1n10_A          237 SYESK  241 (241)
T ss_dssp             EEEC-
T ss_pred             EEeCC
Confidence            99974

>3d30_A YOAJ, expansin like protein; peptidoglycan associated protei unknown function, MLTA, bacteria autolysis, peptidoglycan-B protein; 1.90A {Bacillus subtilis} PDB: 2bh0_A

Probab=100.00  E-value=5e-54  Score=373.14  Aligned_cols=193  Identities=19%  Similarity=0.298  Sum_probs=174.5

Q ss_pred             CCeeEEEEEEeCCCCCCCCCccccCCCCCCCCCCCCeEEEechhccCCC----ccCcceEEEEecCCCCCccccCCCeEE
Q 025298           27 SGWTQAHATFYGGSDASGTMGGACGYGNLYSTGYGISTAALSTALFNDG----ASCGQCYRIMCDYKSDTRWCIKGTSVT  102 (255)
Q Consensus        27 ~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g----~~CG~C~ev~c~~~~~p~~C~~g~sv~  102 (255)
                      ++.+.|+||||+...    .+||||+..   .+++.++||+|+.+|++|    ..||+||||+|.          +++|+
T Consensus         4 ~~~~~G~aT~Y~~g~----~~GACG~~~---~~~~~~~aAls~~~f~~G~~~~~~CG~c~~v~~~----------~gsv~   66 (208)
T 3d30_A            4 DDLHEGYATYTGSGY----SGGAFLLDP---IPSDMEITAINPADLNYGGVKAALAGSYLEVEGP----------KGKTT   66 (208)
T ss_dssp             TCCEEEEEEECSTTS----SSCTTCCCC---CCTTCCEEEECHHHHTGGGCTTTTTTCEEEEEET----------TEEEE
T ss_pred             CCcEEEEEEEcCCCC----CCCcCCCCC---CCCCCEEEEeCHHHhCCCCcCccccCCEEEEEeC----------CCcEE
Confidence            467899999999753    369999864   356789999999999987    799999999993          25899


Q ss_pred             EEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEecCCCCceeEEEc--CcCceeEEEEEe
Q 025298          103 ITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTIN--GRDYFELVLISN  180 (255)
Q Consensus       103 v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gni~~~v~--g~~~w~~v~v~n  180 (255)
                      |+|+|+||+           |.  ..|||||++||.+||.++.|+++|+||+|+|+++|+|+|+++  +++||++|||.|
T Consensus        67 V~v~D~CP~-----------C~--~~~~DLS~~aF~~la~~~~G~i~v~~~~V~C~~~G~i~f~v~~Gs~~~~~~v~v~n  133 (208)
T 3d30_A           67 VYVTDLYPE-----------GA--RGALDLSPNAFRKIGNMKDGKINIKWRVVKAPITGNFTYRIKEGSSRWWAAIQVRN  133 (208)
T ss_dssp             EEEEEECTT-----------CC--TTCEEECHHHHHHHSCGGGSSEEEEEEEECCCCCSCCEEEECTTCSSSEEEEEEES
T ss_pred             EEEEECCCC-----------CC--CCeEECCHHHHHHhcccCCCEEEEEEEEeCCCCCCceeEEEcCCCCCceEEEEEEe
Confidence            999999998           85  589999999999999999999999999999999999999999  799999999999


Q ss_pred             ecCCcceeEEEEEcCCCceeecccccCceEEeCCCCCCcceEEEEEecCCcEEEeCcccCCCCCC----CcEEeccCCC
Q 025298          181 VAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQSLSFKVTTTDGETRIFPNVVPSNWHF----GQSFASSIQF  255 (255)
Q Consensus       181 ~~g~~~I~sVei~~~~~~W~~m~r~~gn~W~~~~~~~g~p~~vRvTs~~G~~i~~~~vip~~w~~----G~~y~s~vqf  255 (255)
                      ++|  +|++|||+++ ++|++|+|+|+|+|..+. +.++||+||||+.+|++|  .++||++|++    |.+|++++||
T Consensus       134 ~~g--~v~~v~i~~~-~~W~~m~r~~~n~~~~~~-~~~~pls~rvT~~~G~~v--~~vip~~w~~~~~~~~~~~~~~Qf  206 (208)
T 3d30_A          134 HKY--PVMKMEYEKD-GKWINMEKMDYNHFVSTN-LGTGSLKVRMTDIRGKVV--KDTIPKLPESGTSKAYTVPGHVQF  206 (208)
T ss_dssp             CSS--CEEEEEEEET-TEEEEEEECTTSCEEEEC-CCSSSEEEEEEETTCCEE--EEEECCCCSSCCSSCEEEECCCCC
T ss_pred             cCC--CEEEEEEecC-CcEEEccccccceeecCC-CCCCCEEEEEEECCCCEE--EEEECCCCccCcccceEEeCcCcc
Confidence            985  9999999987 589999999999997654 444699999999999999  7999999997    8999999998

>1wc2_A Endoglucanase; hydrolase, cellulase, cellulose, double-PSI fold, glycoside hydrolase; 1.2A {Mytilus edulis} SCOP: b.52.1.1

Probab=99.98  E-value=2.6e-33  Score=234.65  Aligned_cols=127  Identities=28%  Similarity=0.415  Sum_probs=107.1

Q ss_pred             CeeEEEEEEeCCCCCCCCCccccCCC-----CCCCCCCCCeEEEechhccCCC------ccCcceEEEEecCCCC---Cc
Q 025298           28 GWTQAHATFYGGSDASGTMGGACGYG-----NLYSTGYGISTAALSTALFNDG------ASCGQCYRIMCDYKSD---TR   93 (255)
Q Consensus        28 ~~~~g~aT~Yg~~~~~g~~~GaCGy~-----~~~~~~~~~~~aA~s~~~~~~g------~~CG~C~ev~c~~~~~---p~   93 (255)
                      +|..++||||++..     +|||||+     ++.+++++.++||+|++||++|      .+||+||||+|++...   +.
T Consensus        13 g~~~A~aT~Yg~~~-----gGACGyG~~~~~~l~~~gyg~~tAALStaLFn~G~~~w~G~~CG~Cyel~c~~~~c~~cg~   87 (181)
T 1wc2_A           13 GKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQGG   87 (181)
T ss_dssp             TEEEEEEEEECCCB-----CTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSCC
T ss_pred             CccccceeEecCCC-----CcccCcCcCCCCCccccCCcceeeecCHHHhCCCccccccccCCCcEEEEcCCCCcccccc
Confidence            69999999999754     6999999     5556678899999999999997      8999999999976511   13


Q ss_pred             cccCCCeEEEEEecCCCCCCCCCCCCCCCCCCC-----------CCceeeChhHHHhcccccCCccceeEEEEecCCCCc
Q 025298           94 WCIKGTSVTITATNFCPPNFALPSDNGGWCNPP-----------RQHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGG  162 (255)
Q Consensus        94 ~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~-----------~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~gn  162 (255)
                      +|.+|++|+|||||+||.+    .+|++||+++           +.||||+.+| .+||....|+++|+||||+|+..+|
T Consensus        88 ~~~~g~SI~VtaTN~CPpn----~~nggWCn~pp~~~~~n~~G~~~HFDLs~pa-~~Ia~~~~GivpV~yrrV~C~~~~~  162 (181)
T 1wc2_A           88 PVREGLSKTFMITNLCPNI----YPNQDWCNQGSQYGGHNKYGYELHLDLENGR-SQVTGMGWNNPETTWEVVNCDSEHN  162 (181)
T ss_dssp             CCCTTCEEEEEEEEEECSS----TTSTTTSCCSSSSSCCCTTSCSEEEEEECTT-STTGGGTCSSEEEEEEEECHHHHHH
T ss_pred             cCCCCCeEEEEEecCCCCC----CCCCCccCCCcccCcccccCccccccccchH-HHhhhhcCCCceeEEEEEeCCCCCC
Confidence            4566789999999999964    4689999753           6899999999 8999999999999999999987444


Q ss_pred             ee
Q 025298          163 VR  164 (255)
Q Consensus       163 i~  164 (255)
                      +.
T Consensus       163 ~~  164 (181)
T 1wc2_A          163 HD  164 (181)
T ss_dssp             HC
T ss_pred             cC
Confidence            43

>3ft1_A PHL P 3 allergen; beta-barrel; 1.79A {Phleum pratense} SCOP: b.7.3.0 PDB: 3ft9_A

Probab=99.96  E-value=8.7e-30  Score=196.60  Aligned_cols=93  Identities=18%  Similarity=0.415  Sum_probs=88.1

Q ss_pred             CceeEEEc--CcCceeEEEEEeecCCcceeEEEEEcCCC-ceeecccccCceEEeCC--CCCCcceEEEEEecCCcEEEe
Q 025298          161 GGVRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGSST-NWMAMSRNWGANWQSNA--YLNGQSLSFKVTTTDGETRIF  235 (255)
Q Consensus       161 gni~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~~~-~W~~m~r~~gn~W~~~~--~~~g~p~~vRvTs~~G~~i~~  235 (255)
                      .+|+|+|+  |++||++|+|.|++|++||.+||||++++ .|++|+| ||+.|++++  +|.+ ||+||||+.+|+++++
T Consensus         2 ~~i~F~V~~gs~~~~l~vlv~nv~G~gdI~~V~ik~s~t~~W~~M~r-wGa~W~~~s~~~l~G-plSfRvt~~~G~~~v~   79 (100)
T 3ft1_A            2 VQVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTK-KGNVWEVKSSKPLVG-PFNFRFMSKGGMRNVF   79 (100)
T ss_dssp             BEEEEEECTTCBTTEEEEEEEEECTTCCEEEEEEECTTCCCCEECEE-ETTEEEEECSSCCCS-SEEEEEEETTCCEEEE
T ss_pred             CCEEEEEecCCCcceEEEEEEEcCCCccEEEEEEEeCCCCCeEEecc-cCCEeEeCCCCCCCC-CEEEEEEEcCCcEEEE
Confidence            47999999  69999999999999999999999999885 7999999 999999986  6887 9999999999999999


Q ss_pred             CcccCCCCCCCcEEeccCCC
Q 025298          236 PNVVPSNWHFGQSFASSIQF  255 (255)
Q Consensus       236 ~~vip~~w~~G~~y~s~vqf  255 (255)
                      .||||++|++|++|+++|||
T Consensus        80 ~nViPa~W~~G~ty~s~vq~   99 (100)
T 3ft1_A           80 DEVIPTAFSIGKTYKPEEQE   99 (100)
T ss_dssp             EEEECTTCCTTCEECCCCBC
T ss_pred             CeEeCCCCCCCcEEeccccc
Confidence            99999999999999999997

>2jnz_A PHL P 3 allergen; timothy grass pollen; NMR {Phleum pratense}

Probab=99.95  E-value=2.1e-27  Score=185.25  Aligned_cols=90  Identities=19%  Similarity=0.464  Sum_probs=84.7

Q ss_pred             ceeEEEc--CcCceeEEEEEeecCCcceeEEEEEc-CCCceeecccccCceEEeCC--CCCCcceEEEEEecCCcEEEeC
Q 025298          162 GVRFTIN--GRDYFELVLISNVAGAGSIKSAYIKG-SSTNWMAMSRNWGANWQSNA--YLNGQSLSFKVTTTDGETRIFP  236 (255)
Q Consensus       162 ni~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~-~~~~W~~m~r~~gn~W~~~~--~~~g~p~~vRvTs~~G~~i~~~  236 (255)
                      ||.|+|+  |++||++|+|.|++|+++|++||||+ +.+.|++|+|+ |+.|++++  +|.+ ||+||||+.+|+++++.
T Consensus        14 ~v~f~V~~~snp~~l~VlV~nv~G~GdI~~V~Ik~~~~~~W~~M~rn-Ga~W~~~s~~~L~G-plSfRvtts~G~~~va~   91 (108)
T 2jnz_A           14 QVTFTVQKGSDPKKLVLDIKYTRPGDSLAEVELRQHGSEEWEPLTKK-GNVWEVKSSKPLVG-PFNFRFMSKGGMRNVFD   91 (108)
T ss_dssp             EEEEEECTTCCSSEEEEEEEEEBTTBCEEEEEEECTTCCCCEECEEE-TTEEEEECSSCCCS-SEEEEEEETTTEEEEEE
T ss_pred             cEEEEEecCCCccEEEEEEEEeCCCCCEEEEEEEeCCCCcEeEcccc-CCEeEeCCCCCCCC-CEEEEEEEcCCcEEEEC
Confidence            8999998  79999999999999999999999997 45789999999 99999986  6887 99999999999999999


Q ss_pred             cccCCCCCCCcEEeccC
Q 025298          237 NVVPSNWHFGQSFASSI  253 (255)
Q Consensus       237 ~vip~~w~~G~~y~s~v  253 (255)
                      ||||++|++|++|++++
T Consensus        92 nViPa~W~~Gqty~s~v  108 (108)
T 2jnz_A           92 EVIPTAFSIGKTYKPEE  108 (108)
T ss_dssp             EEECSSCCTTCEECCCC
T ss_pred             eEECCCCCCCCEEeCCC
Confidence            99999999999999975

>1bmw_A PHL P II, pollen allergen PHL P2; allergy, immunoglobulins, immunology,; NMR {Phleum pratense} SCOP: b.7.3.1 PDB: 1who_A 1whp_A 2vxq_A

Probab=99.92  E-value=3.1e-27  Score=181.22  Aligned_cols=89  Identities=25%  Similarity=0.543  Sum_probs=82.1

Q ss_pred             ceeEEEc--CcCceeEEEEEeecCCcceeEEEEEcC-CCceeecccccCceEEeCC--CCCCcceEEEEEecCCcEEEeC
Q 025298          162 GVRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGS-STNWMAMSRNWGANWQSNA--YLNGQSLSFKVTTTDGETRIFP  236 (255)
Q Consensus       162 ni~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~-~~~W~~m~r~~gn~W~~~~--~~~g~p~~vRvTs~~G~~i~~~  236 (255)
                      +|+|+|+  |++||++|+|.|++  ++|++||||++ .++|++|+|+||++|+++.  +|.| ||+||||+.+|+++++.
T Consensus         3 ~i~F~V~~gs~~~~l~vlv~nv~--gdI~~V~ik~~~~~~W~~M~r~wGa~W~~~~~~~L~G-plSfRvt~~~G~~~v~~   79 (96)
T 1bmw_A            3 KVTFTVEKGSNEKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQG-PFNFRFLTEKGMKNVFD   79 (96)
T ss_dssp             CCCCCCCTTCSSSBCCBCCCCSS--SCCCCCEECCSSSSSCEECBCCSSSSBBCBCCSSCCC-CCCBCCEETTTEECCBS
T ss_pred             CEEEEEecCCCCceEEEEEEEeC--CCEEEEEEEECCCCcEEECccCcCceeEeCCCCCCCC-CEEEEEEEcCCcEEEEe
Confidence            7999999  79999999999998  89999999995 4789999999999999987  5777 99999999999999999


Q ss_pred             cccCCCCCCCcEEeccC
Q 025298          237 NVVPSNWHFGQSFASSI  253 (255)
Q Consensus       237 ~vip~~w~~G~~y~s~v  253 (255)
                      ||||++|++|++|++++
T Consensus        80 nViP~~W~~G~ty~~~~   96 (96)
T 1bmw_A           80 DVVPEKYTIGATYAPEE   96 (96)
T ss_dssp             SCSCSSCCSSSCCCC--
T ss_pred             eEeCCCCCCCCEEeCCC
Confidence            99999999999999864

>1bw3_A Barwin, basic barley SEED protein; lectin; NMR {Hordeum vulgare} SCOP: b.52.1.2 PDB: 1bw4_A

Probab=99.68  E-value=2.1e-17  Score=131.59  Aligned_cols=62  Identities=29%  Similarity=0.592  Sum_probs=56.4

Q ss_pred             CCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeC-hhHHHhccc----ccCCc
Q 025298           73 NDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMA-YPAWQKIGI----YRGGI  147 (255)
Q Consensus        73 ~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs-~~AF~~ia~----~~~G~  147 (255)
                      +++..||+|++|++..+        |++|+|+|+|+||.           |     +|||| +.||++|+.    ...|+
T Consensus        58 ~~g~~CG~cv~Vtn~~n--------GksV~V~VvD~CP~-----------g-----gLDLS~~~AF~~Ia~~g~G~~~G~  113 (125)
T 1bw3_A           58 RGQAACGKCLRVTNPAT--------GAQITARIVDQCAN-----------G-----GLDLDWDTVFTKIDTNGIGYQQGH  113 (125)
T ss_dssp             CSGGGTTCEEEEEETTT--------TEEEEEEEEECCSS-----------S-----SCCSCSSSSHHHHCSSCHHHHHSE
T ss_pred             CCCcccCCEEEeEeCCC--------CCEEEEEEEEeCCC-----------C-----CCCCCCHHHHHHHhccCCcccCcE
Confidence            67889999999999654        68999999999997           4     49999 999999998    78999


Q ss_pred             cceeEEEEecC
Q 025298          148 VPVLYQRVPCK  158 (255)
Q Consensus       148 v~i~~r~V~C~  158 (255)
                      ++|+|++|+|+
T Consensus       114 i~V~w~~V~C~  124 (125)
T 1bw3_A          114 LNVNYQFVDCR  124 (125)
T ss_dssp             EEEEEEEECCC
T ss_pred             EEEEEEEEeCC
Confidence            99999999996

>4avr_A PA4485; unknown function, GRAM-negative bacteria, infectious disease structure-based inhibitor design; 1.08A {Pseudomonas aeruginosa PA01}

Probab=99.29  E-value=2.5e-11  Score=92.19  Aligned_cols=93  Identities=23%  Similarity=0.276  Sum_probs=73.4

Q ss_pred             eEEEEEEeCCC-CCCCCCccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecC
Q 025298           30 TQAHATFYGGS-DASGTMGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNF  108 (255)
Q Consensus        30 ~~g~aT~Yg~~-~~~g~~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~  108 (255)
                      ..|.|+|||.. ++   ...|||=...    ...++||-.+      ..||...+|+...+        |++|+|+|.|+
T Consensus         2 ~~G~ASwYg~~f~G---~~TA~Ge~~~----~~~~tAAH~t------lP~gt~vrVtNl~n--------GksVvVrVnDR   60 (95)
T 4avr_A            2 DTGEASYYGSRHAG---LRTASGERYN----PNAMTAAHRT------LPFGARVRVTNLDN--------RRSVVVRINDR   60 (95)
T ss_dssp             EEEEEEECCGGGTT---SBCTTSCBCC----TTSCEEECSS------SCTTCEEEEEETTT--------CCEEEEEEEEC
T ss_pred             CEEEEEEECCccCC---CCCCCccCcC----CCCCEEEcCC------CCCCcEEEEEECCC--------CcEEEEEEccC
Confidence            47999999964 22   2478874321    2246887764      36999999998765        79999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccccCCccceeEEEEe
Q 025298          109 CPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIYRGGIVPVLYQRVP  156 (255)
Q Consensus       109 Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~~~G~v~i~~r~V~  156 (255)
                      ||.           |.  ...+|||..||++|+....|+.+|+|+.++
T Consensus        61 GP~-----------~~--griIDLS~aAa~~Lg~~~~G~~~V~ve~~~   95 (95)
T 4avr_A           61 GPF-----------RR--GRIIDVSRKAAEGLGMIRSGVAPVRIESLD   95 (95)
T ss_dssp             CCC-----------ST--TEEEEECHHHHHHHTCTTTSCEEEEEEEC-
T ss_pred             CCC-----------CC--CCEEEeCHHHHHHhCCcCCCEEEEEEEEeC
Confidence            998           65  368999999999999999999999999863

>2kqa_A Cerato-platanin; elicitor, secreted, toxin; NMR {Ceratocystis platani}

Probab=98.13  E-value=1e-05  Score=64.20  Aligned_cols=67  Identities=24%  Similarity=0.421  Sum_probs=54.1

Q ss_pred             eEEEech-hccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcc
Q 025298           63 STAALST-ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIG  141 (255)
Q Consensus        63 ~~aA~s~-~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia  141 (255)
                      +|.+... +-|+ ...||.|+||+-.+         |++|.|+.+|.-+                 ..|+++.+||++|.
T Consensus        51 ~IGga~~iagWN-S~~CGtC~~lty~n---------g~sI~vlaID~A~-----------------~gFnIs~~Amn~LT  103 (129)
T 2kqa_A           51 NVGGIPDIAGWD-SPSCGTCWKVTIPN---------GNSIFIRGVDSGR-----------------GGFNVNPTAFTKLV  103 (129)
T ss_dssp             SEEEETTCCSTT-CTTCSCEEEEEETT---------TEEEEEEEEEECS-----------------SSEEECHHHHHHHH
T ss_pred             eeccchhhccCC-CCCCCceEEEEEcC---------CCEEEEEEEccCC-----------------CceeehHHHHHHhc
Confidence            3554444 3466 68999999999842         6899999999744                 36999999999997


Q ss_pred             c-ccCCcc-ceeEEEEe
Q 025298          142 I-YRGGIV-PVLYQRVP  156 (255)
Q Consensus       142 ~-~~~G~v-~i~~r~V~  156 (255)
                      + ...|+| +++|++|+
T Consensus       104 ~G~~lG~V~~a~~~qV~  120 (129)
T 2kqa_A          104 GSTEAGRVDNVNYVQVD  120 (129)
T ss_dssp             SSSSSCCBCSCEEEECC
T ss_pred             CCcccCcEeEEEEEEcC
Confidence            7 678999 99999997

>3sul_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.63A {Moniliophthora perniciosa}

Probab=97.99  E-value=1.5e-05  Score=62.96  Aligned_cols=68  Identities=22%  Similarity=0.355  Sum_probs=53.2

Q ss_pred             EEEech-hccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc
Q 025298           64 TAALST-ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI  142 (255)
Q Consensus        64 ~aA~s~-~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~  142 (255)
                      |.+... +-|++ ..||.|+|++-...        |++|.|..+|.-+                 ..|+|+.+||+.|.+
T Consensus        46 IGg~~~V~gwnS-~~CGtC~~lty~~~--------g~si~vlaID~a~-----------------~Gfnis~~Amn~LT~   99 (122)
T 3sul_A           46 VGAVDTITGWNS-ESCGTCYQITWSGT--------GKTIHVVGVDVAG-----------------NGFNVGQRAMDDLTN   99 (122)
T ss_dssp             EEEETTCCSTTC-TTTTCEEEEEETTT--------TEEEEEEEEEECS-----------------SSEEECHHHHHHHHT
T ss_pred             cccccccccCCC-CCCCceEEEEEcCC--------CcEEEEEEEecCC-----------------CceeehHHHHHHhcC
Confidence            544443 44655 89999999998532        5899999999744                 359999999999974


Q ss_pred             c---cCCccceeEEEEec
Q 025298          143 Y---RGGIVPVLYQRVPC  157 (255)
Q Consensus       143 ~---~~G~v~i~~r~V~C  157 (255)
                      -   ..|+|+++|++|+=
T Consensus       100 G~a~~lG~V~a~~~qV~~  117 (122)
T 3sul_A          100 GQAVALGNIDVTATLVDK  117 (122)
T ss_dssp             SCHHHHSEEEEEEEEECG
T ss_pred             CcceecceEeEEEEEcCH
Confidence            2   45999999999973

>3m3g_A EPL1 protein; fungal, plant defense, fungus, polysaccharide-binding protei; 1.39A {Hypocrea virens}

Probab=97.95  E-value=1.9e-05  Score=62.07  Aligned_cols=65  Identities=25%  Similarity=0.447  Sum_probs=51.2

Q ss_pred             EEEech-hccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc
Q 025298           64 TAALST-ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI  142 (255)
Q Consensus        64 ~aA~s~-~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~  142 (255)
                      |.+... .-|+ ...||.|+||+-.          |++|.|..+|.-+                 ..|+|+.+||+.|.+
T Consensus        46 IGg~~~i~gwn-s~~CGtC~~lty~----------g~si~vlaID~a~-----------------~Gfnis~~A~n~LT~   97 (120)
T 3m3g_A           46 IGGAAAVAGWN-SASCGTCWKLQYS----------GHTIYVLAVDHAA-----------------SGFNIALDAMNALTG   97 (120)
T ss_dssp             EEEETTCCSTT-CTTTTCEEEEEET----------TEEEEEEEEEECS-----------------SSEEECHHHHHHHHT
T ss_pred             cccccccccCC-CCCCCceEEEEEC----------CeEEEEEEEecCC-----------------CceeecHHHHHHhhC
Confidence            544443 3454 4799999999973          5899999999744                 469999999999975


Q ss_pred             c---cCCccceeEEEEe
Q 025298          143 Y---RGGIVPVLYQRVP  156 (255)
Q Consensus       143 ~---~~G~v~i~~r~V~  156 (255)
                      -   ..|+|+++|++|+
T Consensus        98 G~a~~lG~V~a~~~~V~  114 (120)
T 3m3g_A           98 GQAVQLGRVSATATQVP  114 (120)
T ss_dssp             SCHHHHCEEECEEEEEC
T ss_pred             CcceeeeeEeEEEEEcC
Confidence            2   4599999999997

>3suj_A Cerato-platanin 1; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=97.89  E-value=2e-05  Score=62.58  Aligned_cols=71  Identities=23%  Similarity=0.329  Sum_probs=52.6

Q ss_pred             EEEech-hccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc
Q 025298           64 TAALST-ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI  142 (255)
Q Consensus        64 ~aA~s~-~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~  142 (255)
                      |.+... .-|+ ...||.|+||+-.++.+.     .++|.|..+|.-+                 ..|+|+.+||+.|.+
T Consensus        46 IGg~~~i~gwn-s~~CGtC~~lty~g~~~~-----~~si~vlaID~a~-----------------~Gfnis~~Amn~LT~  102 (127)
T 3suj_A           46 IGGSSDIAGYN-SPNCGSCYQLTYSSAHTT-----PKSIYMVAIDRSA-----------------EGFTASKQAMDDLTN  102 (127)
T ss_dssp             EEEETTCCSTT-CTTTTCEEEEEECCSSSC-----CEEEEEEEEEECS-----------------SSEEECHHHHHHHHT
T ss_pred             eccccccccCC-CCCCCceEEEEECCCCCc-----ceEEEEEEEecCC-----------------CceeecHHHHHHhcC
Confidence            444432 3454 479999999998642111     2799999999744                 359999999999974


Q ss_pred             c---cCCccceeEEEEec
Q 025298          143 Y---RGGIVPVLYQRVPC  157 (255)
Q Consensus       143 ~---~~G~v~i~~r~V~C  157 (255)
                      -   ..|+|+++|++|+=
T Consensus       103 g~a~~lG~V~~~~~~V~~  120 (127)
T 3suj_A          103 KRAEELGTVNVDVRKVDF  120 (127)
T ss_dssp             SCHHHHSSEEEEEEEECG
T ss_pred             CccccceeEEEEEEEeCH
Confidence            3   45899999999973

>3suk_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.34A {Moniliophthora perniciosa}

Probab=97.81  E-value=1.8e-05  Score=62.72  Aligned_cols=69  Identities=26%  Similarity=0.421  Sum_probs=52.1

Q ss_pred             EEEech-hccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc
Q 025298           64 TAALST-ALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI  142 (255)
Q Consensus        64 ~aA~s~-~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~  142 (255)
                      |.+... .-|++ ..||.|+||+-.++.      .+++|.|..+|.-+                 ..|+|+.+||+.|.+
T Consensus        47 IGg~~~i~gwnS-~~CGtC~~lty~g~~------~~~si~vlaID~a~-----------------~Gfnis~~Amn~LT~  102 (125)
T 3suk_A           47 IGASSDIGGFNS-PACGNCYTISFTFQG------VTRSINLVAIDHAG-----------------NGFNVAQAAMDELTN  102 (125)
T ss_dssp             EEEETTCCSTTC-TTTTCEEEEEEEETT------EEEEEEEEEEEECS-----------------SSEEECHHHHHHHHT
T ss_pred             eccccccccCCC-CCCCeeEEEEEcCCC------cceEEEEEEEecCC-----------------CceeecHHHHHHhcC
Confidence            554443 34654 799999999985320      02799999999744                 359999999999975


Q ss_pred             c---cCCccceeEEEEe
Q 025298          143 Y---RGGIVPVLYQRVP  156 (255)
Q Consensus       143 ~---~~G~v~i~~r~V~  156 (255)
                      -   ..|+|+++|++|+
T Consensus       103 G~a~~lG~V~~~~~~V~  119 (125)
T 3suk_A          103 GNAVALGTIDVQSQQVA  119 (125)
T ss_dssp             SCHHHHCEEEEEEEEEC
T ss_pred             CcccccceEeEEEEEcC
Confidence            2   4599999999997

>3sum_A Cerato-platanin-like protein; double PSI beta barrel, unknown function; 1.87A {Moniliophthora perniciosa}

Probab=97.77  E-value=7.9e-05  Score=59.55  Aligned_cols=65  Identities=14%  Similarity=0.228  Sum_probs=51.3

Q ss_pred             eEEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhccc
Q 025298           63 STAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGI  142 (255)
Q Consensus        63 ~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~  142 (255)
                      .|.+..   | |...||.|+||+-.          |++|.|..+|.-.+               ..-|||+.+||+.|..
T Consensus        49 ~igg~~---w-ns~~CGtCwkLtY~----------G~sI~vlaID~a~~---------------g~~FnIs~~Amn~LT~   99 (136)
T 3sum_A           49 HFVAAP---E-AQTECGSCWKLRYK----------GNHAFVTVVDRVEE---------------ANLFVGGTDLVKNLTT   99 (136)
T ss_dssp             SEEECC---B-TTBCTTCEEEEEET----------TEEEEEEEEECCCS---------------TTEEEECHHHHHHHTC
T ss_pred             cccccc---c-CCCCCCceEEEEEC----------CeEEEEEEEecCCC---------------cceEeehHHHHHHHhC
Confidence            366555   5 45899999999983          58999999997443               1239999999999974


Q ss_pred             c-------cCCccce-eEEEEe
Q 025298          143 Y-------RGGIVPV-LYQRVP  156 (255)
Q Consensus       143 ~-------~~G~v~i-~~r~V~  156 (255)
                      -       ..|+|++ +|++|+
T Consensus       100 G~~a~~a~elG~Vda~~~~qVd  121 (136)
T 3sum_A          100 FNGAPEGYDWGTAQLFSAYQVD  121 (136)
T ss_dssp             BTTBCHHHHHSEEECSEEEEEC
T ss_pred             CCccccceecceeeeeEEEEcC
Confidence            3       3589999 999997

>2eng_A Endoglucanase V; cellulose degradation, hydrolase (endoglucanase), glycosidase; 1.50A {Humicola insolens} SCOP: b.52.1.1 PDB: 3eng_A* 4eng_A* 1hd5_A 1oa7_A* 1oa9_A 1l8f_A

Probab=95.07  E-value=0.015  Score=49.51  Aligned_cols=53  Identities=25%  Similarity=0.343  Sum_probs=34.2

Q ss_pred             EEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCh
Q 025298           64 TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAY  134 (255)
Q Consensus        64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~  134 (255)
                      +||.+-.--.....|++|||++=++.  +  . .||+.+|+||+.-.+-             ..+||||..
T Consensus        72 FaA~~~~g~~e~~~Cc~C~~LtFt~~--~--~-~GKkmiVQ~TNtG~Dl-------------~~n~FDl~i  124 (210)
T 2eng_A           72 FAATSIAGSNEAGWCCACYELTFTSG--P--V-AGKKMVVQSTSTGGDL-------------GSNHFDLNI  124 (210)
T ss_dssp             EEEEECTTCCHHHHTTCEEEEEECSG--G--G-TTCEEEEEEEEC------------------CCEEEEEC
T ss_pred             eeeeeccCCccccccceeEEEEEcCC--C--c-CCCEEEEEEecccCCC-------------CCCceeEec
Confidence            56665221111257999999998775  2  1 3799999999986541             258999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	255
d1n10a2	143	b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-t	1e-44
d1wc2a1	180	b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mu	1e-43
d1n10a1	95	b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {T	3e-29
d1whoa_	94	b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum praten	4e-23

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 143

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  145 bits (366), Expect = 1e-44
 Identities = 37/146 (25%), Positives = 54/146 (36%), Gaps = 13/146 (8%)

Query: 20  SIKAFSPSGWTQAHATFYGGSDASGTM--GGACGYGNLYSTGYGISTAALSTALFNDGAS 77
           +I A     W  A +T+YG    +G    GGACGY ++    +   T   +T +F  G  
Sbjct: 8   NITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRG 67

Query: 78  CGQCYRIMCDYKSDTRWCIKGTS-VTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPA 136
           CG C+ I C        C      V IT  N  P             +     F      
Sbjct: 68  CGSCFEIKCTKP---EACSGEPVVVHITDDNEEPI-------APYHFDLSGHAFGAMAKK 117

Query: 137 WQKIGIYRGGIVPVLYQRVPCKKPGG 162
             +  +   G + + ++RV CK P G
Sbjct: 118 GDEQKLRSAGELELQFRRVKCKYPEG 143

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]} Length = 180

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

 Score =  143 bits (362), Expect = 1e-43
 Identities = 36/172 (20%), Positives = 49/172 (28%), Gaps = 35/172 (20%)

Query: 27  SGWTQAHATFYGGSDASGTMGGACGYGNL-----YSTGYGISTAALSTALFND------G 75
           +G + A  T Y  S       GACG G       +    G   AA S   F+       G
Sbjct: 12  NGKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCG 66

Query: 76  ASCGQCYRIMCDYKS---DTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQ---- 128
             CGQC ++               +G S T   TN CP        N  WCN   Q    
Sbjct: 67  QHCGQCIKLTTTGGYVPGQGGPVREGLSKTFMITNLCPNI----YPNQDWCNQGSQYGGH 122

Query: 129 -------HFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPGGVRFTINGRDYF 173
                  H D+      ++           ++ V C               +
Sbjct: 123 NKYGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEHNHDHRTPSNSMY 173

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 95

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score =  104 bits (260), Expect = 3e-29
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 4/93 (4%)

Query: 163 VRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGS-STNWMAMSRNWGANWQSNAYLNGQ 219
           V F +       +  +L+  V G G + +  IK      W+ +  +WGA W+ +      
Sbjct: 3   VTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLT 62

Query: 220 -SLSFKVTTTDGETRIFPNVVPSNWHFGQSFAS 251
              + + TT  G      +V+P  W    S+ S
Sbjct: 63  GPFTVRYTTEGGTKTEAEDVIPEGWKADTSYES 95

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]} Length = 94

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

 Score = 87.9 bits (218), Expect = 4e-23
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 2/90 (2%)

Query: 163 VRFTIN-GRDYFELVLISNVAGAGSIKSAYIKGSSTNWMAMSRNWGANWQSNAYLNGQ-S 220
           V FT+  G +   L ++    G    +    +  S  W+AM++  G  W  ++    Q  
Sbjct: 4   VTFTVEKGSNEKHLAVLVKYEGDTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQGP 63

Query: 221 LSFKVTTTDGETRIFPNVVPSNWHFGQSFA 250
            +F+  T  G   +F +VVP  +  G ++A
Sbjct: 64  FNFRFLTEKGMKNVFDDVVPEKYTIGATYA 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	255
d1n10a2	143	Pollen allergen PHL P 1 N-terminal domain {Timothy	100.0
d1wc2a1	180	Endoglucanase (CMCase) {Blue mussel (Mytilus eduli	100.0
d1n10a1	95	PHL P 1 C-terminal domain {Timothy grass (Phleum p	99.95
d1whoa_	94	PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 1	99.93
d1bw3a_	125	Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}	98.7
d2enga_	210	Endoglucanase V (Eng V) {Humicola insolens [TaxId:	96.16

>d1n10a2 b.52.1.3 (A:1003-1145) Pollen allergen PHL P 1 N-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Pollen allergen PHL P 1 N-terminal domain
domain: Pollen allergen PHL P 1 N-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=100.00  E-value=5.2e-37  Score=249.87  Aligned_cols=128  Identities=29%  Similarity=0.563  Sum_probs=106.3

Q ss_pred             ccccccCCCCeeEEEEEEeCCCCCCCC--CccccCCCCCCCCCCCCeEEEechhccCCCccCcceEEEEecCCCCCcccc
Q 025298           19 VSIKAFSPSGWTQAHATFYGGSDASGT--MGGACGYGNLYSTGYGISTAALSTALFNDGASCGQCYRIMCDYKSDTRWCI   96 (255)
Q Consensus        19 ~~~~~~~~~~~~~g~aT~Yg~~~~~g~--~~GaCGy~~~~~~~~~~~~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~   96 (255)
                      .++.+...++|++|+||||+.+++.++  .+|||||++++..|++.++||+|+++|++|..||+||||+|.++   +.|.
T Consensus         7 ~~~~a~~~~~w~~g~AT~Yg~~~~~~~~~~gGACGyg~~~~~p~g~~~aAls~~l~~~g~~CG~cyev~c~~~---~~c~   83 (143)
T d1n10a2           7 PNITATYGDKWLDAKSTWYGKPTGAGPKDNGGACGYKDVDKPPFSGMTGCGNTPIFKSGRGCGSCFEIKCTKP---EACS   83 (143)
T ss_dssp             SCCCCBCCCSCEEEEEEEEC----------CCTTCCCCTTSTTTTTCEEEECHHHHGGGTTSSCEEEEEECSS---TTBC
T ss_pred             CCcccccCCCcEeeEEeEeCCCCCCCCCCCcccCCCCCcccCCCcceEEEeCHhHccCCCcCCcceEeEcCCC---Cccc
Confidence            445566688999999999998877653  47999999988788999999999999999999999999999774   6787


Q ss_pred             CCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeChhHHHhcccc-------cCCccceeEEEEecCCCCc
Q 025298           97 KGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAYPAWQKIGIY-------RGGIVPVLYQRVPCKKPGG  162 (255)
Q Consensus        97 ~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~~AF~~ia~~-------~~G~v~i~~r~V~C~~~gn  162 (255)
                      + ++|+|+|||.||+           |. +..|||||++||.+||+.       +.|+|+|+||||+|.++|+
T Consensus        84 ~-~sv~V~vtd~c~~-----------~~-~~~hfDLS~~AF~~iA~~~~~~~~~~~Giv~V~yRrV~C~~~gg  143 (143)
T d1n10a2          84 G-EPVVVHITDDNEE-----------PI-APYHFDLSGHAFGAMAKKGDEQKLRSAGELELQFRRVKCKYPEG  143 (143)
T ss_dssp             S-CCEEEEEEEECSS-----------CS-SSSEEEEEHHHHHTTBSTTCHHHHHTTCSEEEEEEECCCCCCTT
T ss_pred             C-CCEEEEEEecccC-----------CC-CCccccCCHHHHhhhccccchhhheecCccceEEEEEeccCCCC
Confidence            4 6999999999997           33 258999999999999985       6799999999999999873

>d1wc2a1 b.52.1.1 (A:1-180) Endoglucanase (CMCase) {Blue mussel (Mytilus edulis) [TaxId: 6550]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase (CMCase)
species: Blue mussel (Mytilus edulis) [TaxId: 6550]

Probab=100.00  E-value=1.7e-37  Score=259.53  Aligned_cols=138  Identities=25%  Similarity=0.394  Sum_probs=116.6

Q ss_pred             CCeeEEEEEEeCCCCCCCCCccccCCCCCCC-----CCCCCeEEEechhccCC------CccCcceEEEEecCCCC---C
Q 025298           27 SGWTQAHATFYGGSDASGTMGGACGYGNLYS-----TGYGISTAALSTALFND------GASCGQCYRIMCDYKSD---T   92 (255)
Q Consensus        27 ~~~~~g~aT~Yg~~~~~g~~~GaCGy~~~~~-----~~~~~~~aA~s~~~~~~------g~~CG~C~ev~c~~~~~---p   92 (255)
                      .+|+.+++|||+.++     +|||||+++..     .+++.++||+|+++|++      |.+||+||||||++...   +
T Consensus        12 ~g~~~A~aT~Ygd~~-----~GACGyG~~~~~~~~~~g~G~~tAAlS~~lf~~~~~~~~G~~CG~CyeV~C~~~~~~~~~   86 (180)
T d1wc2a1          12 NGKSCASTTNYHDSH-----KGACGCGPASGDAQFGWNAGSFVAAASQMYFDSGNKGWCGQHCGQCIKLTTTGGYVPGQG   86 (180)
T ss_dssp             TTEEEEEEEEECCCB-----CTTTTCSCSSSSBCCSSGGGSCEEEEEHHHHCTTCCSSSCTTTTCEEEEEEEEEECTTSC
T ss_pred             CCccccceEEeCCCC-----CCCCCCCcCCCCCccccCCcceEeeccHHHhcCCcccccccccCCEEEEEECCCCCCccC
Confidence            489999999999765     59999999743     23567999999999999      88999999999987521   1


Q ss_pred             ccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCC-----------CceeeChhHHHhcccccCCccceeEEEEecCCCC
Q 025298           93 RWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPR-----------QHFDMAYPAWQKIGIYRGGIVPVLYQRVPCKKPG  161 (255)
Q Consensus        93 ~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~-----------~~~DLs~~AF~~ia~~~~G~v~i~~r~V~C~~~g  161 (255)
                      ..|..+++|+|||||+||.++    .|++||+++.           .||||+ .+|.+||....|+|+|+||+|+|+..+
T Consensus        87 ~~~~~g~sV~V~iTd~CP~n~----~n~gWCn~p~~~~~~n~~g~~~HFDLs-~af~~ia~~~~G~v~V~yrrV~C~~~g  161 (180)
T d1wc2a1          87 GPVREGLSKTFMITNLCPNIY----PNQDWCNQGSQYGGHNKYGYELHLDLE-NGRSQVTGMGWNNPETTWEVVNCDSEH  161 (180)
T ss_dssp             CCCCTTCEEEEEEEEEECSST----TSTTTSCCSSSSSCCCTTSCSEEEEEE-CTTSTTGGGTCSSEEEEEEEECHHHHH
T ss_pred             CCCCCCCcEEEEEEecCCCCC----CCCCccCCccccccccccCcccceech-HHHHHHhhhcCCcceeEEEEeeCCCcc
Confidence            234446899999999999863    4789998643           399997 599999999999999999999999999


Q ss_pred             ceeEEEcCcCcee
Q 025298          162 GVRFTINGRDYFE  174 (255)
Q Consensus       162 ni~~~v~g~~~w~  174 (255)
                      ++++++.+|++|-
T Consensus       162 ~~~~~~~~n~~~~  174 (180)
T d1wc2a1         162 NHDHRTPSNSMYG  174 (180)
T ss_dssp             HHCTTSCCHHHHT
T ss_pred             cccccccCCcchh
Confidence            9999998888874

>d1n10a1 b.7.3.1 (A:1146-1240) PHL P 1 C-terminal domain {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 1 C-terminal domain
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.95  E-value=9.7e-29  Score=187.62  Aligned_cols=90  Identities=23%  Similarity=0.535  Sum_probs=82.7

Q ss_pred             ceeEEEc--CcCceeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeCCCCC-CcceEEEEEecCCcEEEeCc
Q 025298          162 GVRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSNAYLN-GQSLSFKVTTTDGETRIFPN  237 (255)
Q Consensus       162 ni~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~~~-g~p~~vRvTs~~G~~i~~~~  237 (255)
                      +|+|+|+  ||+|||+|+|.|++|.++|.+|||++++ ++|++|+|+|||+|+++.++. .+||+||||+.+|+++++.|
T Consensus         2 ~i~F~v~~gsnp~~lav~v~n~~g~gdI~~vevk~~g~~~W~~m~r~~ga~W~~~~~~~~~gpls~Rvt~~~G~~~v~~n   81 (95)
T d1n10a1           2 KVTFHVEKGSNPNYLALLVKYVNGDGDVVAVDIKEKGKDKWIELKESWGAIWRIDTPDKLTGPFTVRYTTEGGTKTEAED   81 (95)
T ss_dssp             CCEEEECTTCBTTEEEEEEECCCCSSCEEEEEEEETTCCCCEECBCCTTTCEEEECSSCCCSCEEEEEEESSSCEEEEEE
T ss_pred             cEEEEECCCCCcceEEEEEEEcCCCCcEEEEEEEeCCCCcceEEEECCCCeEEECCCCCCCcCEEEEEEEcCCCEEEECc
Confidence            6899999  6899999999999999999999999886 679999999999999876442 23999999999999999999


Q ss_pred             ccCCCCCCCcEEec
Q 025298          238 VVPSNWHFGQSFAS  251 (255)
Q Consensus       238 vip~~w~~G~~y~s  251 (255)
                      |||++|++|++|+|
T Consensus        82 ViP~~W~~G~tY~s   95 (95)
T d1n10a1          82 VIPEGWKADTSYES   95 (95)
T ss_dssp             EECSSCCSSEEEEC
T ss_pred             eECCCCCCCCEEeC
Confidence            99999999999996

>d1whoa_ b.7.3.1 (A:) PHL P 2 {Timothy grass (Phleum pratense) [TaxId: 15957]}

class: All beta proteins
fold: C2 domain-like
superfamily: PHL pollen allergen
family: PHL pollen allergen
domain: PHL P 2
species: Timothy grass (Phleum pratense) [TaxId: 15957]

Probab=99.93  E-value=1e-25  Score=170.50  Aligned_cols=87  Identities=24%  Similarity=0.560  Sum_probs=78.4

Q ss_pred             ceeEEEc--CcCceeEEEEEeecCCcceeEEEEEcCC-CceeecccccCceEEeCCC--CCCcceEEEEEecCCcEEEeC
Q 025298          162 GVRFTIN--GRDYFELVLISNVAGAGSIKSAYIKGSS-TNWMAMSRNWGANWQSNAY--LNGQSLSFKVTTTDGETRIFP  236 (255)
Q Consensus       162 ni~~~v~--g~~~w~~v~v~n~~g~~~I~sVei~~~~-~~W~~m~r~~gn~W~~~~~--~~g~p~~vRvTs~~G~~i~~~  236 (255)
                      .|+|+|+  ||+|||+|+|.|++  ++|.+|||+..+ ++|++|+|+|||+|+++.+  +.+ ||+||||+.+|+++++.
T Consensus         3 ~v~f~v~~GSnp~~lav~v~~~g--g~i~~vev~~~gs~~W~~M~r~wGa~W~~~~~~~~~g-plsfRvt~~~G~~~v~~   79 (94)
T d1whoa_           3 KVTFTVEKGSNEKHLAVLVKYEG--DTMAEVELREHGSDEWVAMTKGEGGVWTFDSEEPLQG-PFNFRFLTEKGMKNVFD   79 (94)
T ss_dssp             SEEEEECTTCBTTEEEEEEEETT--CCEEEEEEECTTCCCCEECEECSTTEEEEECSSCCCS-SEEEEEEETTSCEEEEE
T ss_pred             cEEEEECCCCCccEEEEEEEEcC--CCEEEEEEEECCCCceeECccCcCccEEECCCCCCCc-cEEEEEEEcCCCEEEEc
Confidence            5899998  68999999999997  489999999876 5799999999999998654  444 99999999999999999


Q ss_pred             cccCCCCCCCcEEec
Q 025298          237 NVVPSNWHFGQSFAS  251 (255)
Q Consensus       237 ~vip~~w~~G~~y~s  251 (255)
                      ||||++|++|++|+.
T Consensus        80 nViP~~W~~G~ty~~   94 (94)
T d1whoa_          80 DVVPEKYTIGATYAP   94 (94)
T ss_dssp             EEECSSCCTTCEECC
T ss_pred             ceECCCCCCCCEECc
Confidence            999999999999973

>d1bw3a_ b.52.1.2 (A:) Barwin {Barley (Hordeum vulgare) [TaxId: 4513]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Barwin
domain: Barwin
species: Barley (Hordeum vulgare) [TaxId: 4513]

Probab=98.70  E-value=5.2e-09  Score=79.06  Aligned_cols=60  Identities=30%  Similarity=0.615  Sum_probs=51.1

Q ss_pred             CccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeC-hhHHHhccc----ccCCccc
Q 025298           75 GASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMA-YPAWQKIGI----YRGGIVP  149 (255)
Q Consensus        75 g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs-~~AF~~ia~----~~~G~v~  149 (255)
                      -..||+|++|+.+..        |++++++|+|+|..                +-|||. +..|++|-.    ...|.+.
T Consensus        60 q~sCGkclrvTN~at--------ga~~~~RiVDqCsn----------------gGlDLD~~~vFn~iDtdG~G~~~Ghl~  115 (125)
T d1bw3a_          60 QAACGKCLRVTNPAT--------GAQITARIVDQCAN----------------GGLDLDWDTVFTKIDTNGIGYQQGHLN  115 (125)
T ss_dssp             GGGTTCEEEEEETTT--------TEEEEEEEEECCSS----------------SSCCSCSSSSHHHHCSSCHHHHHSEEE
T ss_pred             cccccceEEeeeccc--------CcEEEEEEeecccC----------------CCCccccHhhhheecCCCcccccccEE
Confidence            368999999998765        78999999999774                579999 679999952    4678899


Q ss_pred             eeEEEEecC
Q 025298          150 VLYQRVPCK  158 (255)
Q Consensus       150 i~~r~V~C~  158 (255)
                      |.|++|.|.
T Consensus       116 V~y~fV~C~  124 (125)
T d1bw3a_         116 VNYQFVDCR  124 (125)
T ss_dssp             EEEEEECCC
T ss_pred             EEEEEecCC
Confidence            999999995

>d2enga_ b.52.1.1 (A:) Endoglucanase V (Eng V) {Humicola insolens [TaxId: 34413]}

class: All beta proteins
fold: Double psi beta-barrel
superfamily: Barwin-like endoglucanases
family: Eng V-like
domain: Endoglucanase V (Eng V)
species: Humicola insolens [TaxId: 34413]

Probab=96.16  E-value=0.0038  Score=51.01  Aligned_cols=53  Identities=25%  Similarity=0.335  Sum_probs=34.1

Q ss_pred             EEEechhccCCCccCcceEEEEecCCCCCccccCCCeEEEEEecCCCCCCCCCCCCCCCCCCCCCceeeCh
Q 025298           64 TAALSTALFNDGASCGQCYRIMCDYKSDTRWCIKGTSVTITATNFCPPNFALPSDNGGWCNPPRQHFDMAY  134 (255)
Q Consensus        64 ~aA~s~~~~~~g~~CG~C~ev~c~~~~~p~~C~~g~sv~v~V~D~Cp~~~~~~~~~~~~C~~~~~~~DLs~  134 (255)
                      +||.+-.-......|.+|||++=+++  +.   .||+.+|+||+.=-+             -..+||||..
T Consensus        72 fAA~~~~g~~e~~~Cc~Cy~LtFTs~--~~---~GKkMiVQ~tNTGgD-------------lg~n~FDl~i  124 (210)
T d2enga_          72 FAATSIAGSNEAGWCCACYELTFTSG--PV---AGKKMVVQSTSTGGD-------------LGSNHFDLNI  124 (210)
T ss_dssp             EEEEECTTCCHHHHTTCEEEEEECSG--GG---TTCEEEEEEEEC------------------CCEEEEEC
T ss_pred             eeeeeecCCCccccccccEEEEeecC--Cc---CCCEEEEEEeccCCc-------------cCCCeeeEec
Confidence            55555332223356999999998765  11   379999999985111             1258999985