Citrus Sinensis ID: 025330

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKIVGCI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEccccHHcccccccccccccccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHcccccHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccEEEEccHHHHHHccccccccHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccccccccEEEEEcccccccccccccccccEEcccccc
Coil and Loop (DISEMBL)
myrdrgggaskseivagpldrKRINDALDKhlektspstsralsskdkerlsvpstsagksqldhrdsrsaslpknkcsdeesetdseesdvsgsdgddtsWISWFCNlrgneffcevddeyiqddfnlcglssqvpyydYALDLILDVesshgdmfTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKyknydfgrcprvyccgqpclpvgqsdiprsstvkiycpkcediyyprskyqgSILKIVGCI
Flexible Loop (DISEMBL)
myrdrgggaskseivagpldrKRINDALdkhlektspstsralsskdkerlsvpstsagksqldhrdsrsaslpknkcsdeesetdseesdvsgsdgdDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLpvgqsdiprsstVKIYCPKCEdiyyprskyqgsilkivgci
Low Complexity Region (SEG)
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCsdeesetdseesdvsgsdgddtsWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKIVGCI
Disordered region (IsUnstruct)
****************************************************************************************************SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKIVGC*
Disordered Region (DISOPRED)
*************************DALD************************************************************************WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG********ELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKIVGCI
Disordered Region (DISEMBL)
**********KSEIVAGPLDRKRINDALDKHL*****************************************************************DDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKIVGCI
Disordered Region (DISPRO)
****************GPLDRKRINDALDKHLE*****************************************************************DTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKY**S*LK***CI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKIVGCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
O80507	283	Putative casein kinase II	yes	no	0.921	0.826	0.775	1e-109
P40228	287	Casein kinase II subunit	no	no	0.940	0.832	0.779	1e-107
P40229	282	Casein kinase II subunit	no	no	0.937	0.843	0.732	1e-101
O81275	276	Casein kinase II subunit	no	no	0.854	0.786	0.742	2e-94
P28021	215	Casein kinase II subunit	N/A	no	0.578	0.683	0.632	2e-52
Q91398	215	Casein kinase II subunit	yes	no	0.578	0.683	0.632	2e-52
P67874	215	Casein kinase II subunit	yes	no	0.578	0.683	0.632	3e-52
P67873	215	Casein kinase II subunit	yes	no	0.578	0.683	0.632	3e-52
P67872	215	Casein kinase II subunit	yes	no	0.578	0.683	0.632	3e-52
P67871	215	Casein kinase II subunit	yes	no	0.578	0.683	0.632	3e-52

>sp|O80507|CSK2E_ARATH Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1

 Score =  392 bits (1008), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 197/254 (77%), Positives = 215/254 (84%), Gaps = 20/254 (7%)

Query: 1   MYRDRGGGASKS-------EIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
           MY+DR GG           EI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SV
Sbjct: 1   MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SV 58

Query: 54  PSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
           PSTS  KSQL  R             D ES+TDSE SDVSGS+GDDTSWISWFCNLRGNE
Sbjct: 59  PSTSTAKSQLHSRSP-----------DVESDTDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQ+E+VESAAEMLY
Sbjct: 108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLY 167

Query: 174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
           GLIHVRYILT+KGMAAM+EKYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKC
Sbjct: 168 GLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKC 227

Query: 234 EDIYYPRSKYQGSI 247
           EDIYYPRSKYQG+I
Sbjct: 228 EDIYYPRSKYQGNI 241

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.
Arabidopsis thaliana (taxid: 3702)

>sp|P40228|CSK2B_ARATH Casein kinase II subunit beta OS=Arabidopsis thaliana GN=CKB1 PE=1 SV=1

 Score =  386 bits (992), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/254 (77%), Positives = 220/254 (86%), Gaps = 15/254 (5%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
           MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A  
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANL 52

Query: 59  -GKSQ---LDHRDSRSASLPKNK-CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
            GK Q   ++HRDSRSASL KN   SD+ES+TDSEESDVSGSDG+DTSWISWFCNLRGNE
Sbjct: 53  IGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNE 112

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLY
Sbjct: 113 FFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLY 172

Query: 174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
           GLIH RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKC
Sbjct: 173 GLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKC 232

Query: 234 EDIYYPRSKYQGSI 247
           EDIYYPRSKYQG+I
Sbjct: 233 EDIYYPRSKYQGNI 246

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P40229|CSK2C_ARATH Casein kinase II subunit beta' OS=Arabidopsis thaliana GN=CKB2 PE=1 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 183/250 (73%), Positives = 206/250 (82%), Gaps = 12/250 (4%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RG   SKSE+V    DRKRIN+  D       PS S +     K +++  S   GK
Sbjct: 1   MYRERGMVGSKSEVV----DRKRINEIHDNR-----PSHSMSQPVNGKGKVTSTSVLMGK 51

Query: 61  SQL-DHRDSRSASLPKNKCSD--EESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCE 117
            QL D   SRS S+ K   SD  + S+TDSEES+VSGSDG+DTSWISWFCNLRGNEFFCE
Sbjct: 52  QQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFFCE 111

Query: 118 VDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIH 177
           VDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+IH
Sbjct: 112 VDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGMIH 171

Query: 178 VRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 237
            R+ILTSKG+A+ML+KYKNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCPKCED+Y
Sbjct: 172 ARFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCEDVY 231

Query: 238 YPRSKYQGSI 247
           YPRSKYQG+I
Sbjct: 232 YPRSKYQGNI 241

Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Arabidopsis thaliana (taxid: 3702)

>sp|O81275|CSK2D_ARATH Casein kinase II subunit beta-3 OS=Arabidopsis thaliana GN=CKB3 PE=1 SV=1

 Score =  345 bits (884), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 176/237 (74%), Positives = 198/237 (83%), Gaps = 20/237 (8%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTS--RALSSKDKERLSVPSTSAGKSQLDHRDSRS 70
           EI+ G +DRKRINDAL+K LEK+S ST+  R  SSKDK+  S  ST   K+QL       
Sbjct: 17  EILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFTST---KTQL------- 66

Query: 71  ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLC 130
                    D ESETDSE SDVSGS+GDDTSWISWFCNLRGN+FFCEVD++YIQDDFNLC
Sbjct: 67  --------PDVESETDSEGSDVSGSEGDDTSWISWFCNLRGNDFFCEVDEDYIQDDFNLC 118

Query: 131 GLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAM 190
           GLS QVPYYDYALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLIHVRYILT+KGMAAM
Sbjct: 119 GLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLIHVRYILTTKGMAAM 178

Query: 191 LEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSI 247
            EKYKN DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDI YPRSK+QG+I
Sbjct: 179 TEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDISYPRSKFQGNI 235

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Stimulates the binding of CCA1 to promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 113/147 (76%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRS 241
           +G SDIP  + VK+YCPKC D+Y P+S
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKS 148

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Xenopus laevis (taxid: 8355)

>sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1

 Score =  205 bits (522), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 113/147 (76%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRS 241
           +G SDIP  + VK+YCPKC D+Y P+S
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKS 148

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Danio rerio (taxid: 7955)

>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 113/147 (76%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRS 241
           +G SDIP  + VK+YCPKC D+Y P+S
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKS 148

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Rattus norvegicus (taxid: 10116)

>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 113/147 (76%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRS 241
           +G SDIP  + VK+YCPKC D+Y P+S
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKS 148

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Oryctolagus cuniculus (taxid: 9986)

>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 113/147 (76%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRS 241
           +G SDIP  + VK+YCPKC D+Y P+S
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKS 148

Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.

Sus scrofa (taxid: 9823)

>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1

 Score =  205 bits (521), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 113/147 (76%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRS 241
           +G SDIP  + VK+YCPKC D+Y P+S
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKS 148

Plays a complex role in regulating the basal catalytic activity of the alpha subunit (By similarity). Participates in Wnt signaling.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
225453309	288	PREDICTED: putative casein kinase II sub	0.972	0.857	0.955	1e-129
21261784	280	protein kinase Ck2 regulatory subunit 2	0.940	0.853	0.906	1e-125
147801660	282	hypothetical protein VITISV_022015 [Viti	0.948	0.854	0.931	1e-123
449442327	295	PREDICTED: putative casein kinase II sub	0.960	0.827	0.901	1e-118
255571069	338	casein kinase II beta chain, putative [R	0.917	0.689	0.917	1e-117
224137102	300	predicted protein [Populus trichocarpa]	0.925	0.783	0.918	1e-116
224063639	301	predicted protein [Populus trichocarpa]	0.925	0.780	0.902	1e-114
118489558	330	unknown [Populus trichocarpa x Populus d	0.925	0.712	0.902	1e-114
297828187	283	hypothetical protein ARALYDRAFT_483599 [	0.921	0.826	0.779	1e-107
297790971	283	hypothetical protein ARALYDRAFT_494272 [	0.940	0.844	0.796	1e-107

>gi|225453309|ref|XP_002269020.1| PREDICTED: putative casein kinase II subunit beta-4 isoform 1 [Vitis vinifera] gi|297734650|emb|CBI16701.3| unnamed protein product [Vitis vinifera]

 Score =  467 bits (1202), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 236/247 (95%), Positives = 245/247 (99%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTS+ LSSKDKERLSVPSTSAGK
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGK 60

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQLDHRD+R+ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 61  SQLDHRDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180

Query: 181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240
           ILTSKGM+AMLEKYK+YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR
Sbjct: 181 ILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240

Query: 241 SKYQGSI 247
           SKYQG+I
Sbjct: 241 SKYQGNI 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21261784|emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]

 Score =  454 bits (1168), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 224/247 (90%), Positives = 231/247 (93%), Gaps = 8/247 (3%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYRDRGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTSRA   KDK   +VPSTSAGK
Sbjct: 1   MYRDRGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSRAF--KDK---AVPSTSAGK 55

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           S   H D R+    KNKCSD+ESETDSEESDVSGSDG+DTSWISWFCNLRGNEFFCEVDD
Sbjct: 56  SHQHHPDHRAT---KNKCSDDESETDSEESDVSGSDGEDTSWISWFCNLRGNEFFCEVDD 112

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 113 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 172

Query: 181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240
           ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR
Sbjct: 173 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 232

Query: 241 SKYQGSI 247
           SKYQG+I
Sbjct: 233 SKYQGNI 239

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801660|emb|CAN72327.1| hypothetical protein VITISV_022015 [Vitis vinifera]

 Score =  447 bits (1149), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 230/247 (93%), Positives = 239/247 (96%), Gaps = 6/247 (2%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MYR+RGGG+SKSEIV GPLDRKRINDALDKHLEK+SPSTS+ LSSKDKERLSVPSTSAGK
Sbjct: 1   MYRERGGGSSKSEIVGGPLDRKRINDALDKHLEKSSPSTSKGLSSKDKERLSVPSTSAGK 60

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQLDHRD+R+ASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 61  SQLDHRDTRAASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSH      EQNELVESAAEMLYGLIHVRY
Sbjct: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSH------EQNELVESAAEMLYGLIHVRY 174

Query: 181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240
           ILTSKGM+AMLEKYK+YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR
Sbjct: 175 ILTSKGMSAMLEKYKSYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 234

Query: 241 SKYQGSI 247
           SKYQG+I
Sbjct: 235 SKYQGNI 241

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442327|ref|XP_004138933.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus] gi|449505605|ref|XP_004162519.1| PREDICTED: putative casein kinase II subunit beta-4-like [Cucumis sativus]

 Score =  430 bits (1106), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 230/255 (90%), Positives = 235/255 (92%), Gaps = 11/255 (4%)

Query: 1   MYRDRGGG--------ASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLS 52
           MYRDRGGG        +SKSEIV   LDRKRINDALDKHLEKTSPSTSR L SK+KERLS
Sbjct: 1   MYRDRGGGGGGGGIGGSSKSEIVGATLDRKRINDALDKHLEKTSPSTSRGLHSKEKERLS 60

Query: 53  VPSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN 112
           VPSTS GK QLDHR   SASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN
Sbjct: 61  VPSTSTGKPQLDHR---SASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGN 117

Query: 113 EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML 172
           EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML
Sbjct: 118 EFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEML 177

Query: 173 YGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPK 232
           YGLIHVRYILT KG++AMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPK
Sbjct: 178 YGLIHVRYILTGKGISAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPK 237

Query: 233 CEDIYYPRSKYQGSI 247
           CEDIYYPRSKYQG+I
Sbjct: 238 CEDIYYPRSKYQGNI 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571069|ref|XP_002526485.1| casein kinase II beta chain, putative [Ricinus communis] gi|223534160|gb|EEF35876.1| casein kinase II beta chain, putative [Ricinus communis]

 Score =  427 bits (1099), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 221/241 (91%), Positives = 228/241 (94%), Gaps = 8/241 (3%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSAGK 60
           MY+DRGGG+S+SE     +DRKRINDALDKHLEK SPSTSR L+SKDKERLSVPSTS GK
Sbjct: 1   MYKDRGGGSSRSE-----MDRKRINDALDKHLEKLSPSTSRTLNSKDKERLSVPSTSTGK 55

Query: 61  SQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 120
           SQ DHR   SAS+ KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD
Sbjct: 56  SQFDHR---SASISKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDD 112

Query: 121 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 180
           EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY
Sbjct: 113 EYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY 172

Query: 181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 240
           ILTSKGM+AMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR
Sbjct: 173 ILTSKGMSAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPR 232

Query: 241 S 241
           S
Sbjct: 233 S 233

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137102|ref|XP_002327022.1| predicted protein [Populus trichocarpa] gi|222835337|gb|EEE73772.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 224/244 (91%), Positives = 228/244 (93%), Gaps = 9/244 (3%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKS-----QLDH 65
           EIV G LDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS      L+H
Sbjct: 16  EIVGGQLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSSQHQQHLEH 75

Query: 66  R--DSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI 123
              DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI
Sbjct: 76  HRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYI 135

Query: 124 QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT 183
           QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT
Sbjct: 136 QDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILT 195

Query: 184 SKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKY 243
           SKGM+AMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKY
Sbjct: 196 SKGMSAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKY 255

Query: 244 QGSI 247
           QG+I
Sbjct: 256 QGNI 259

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063639|ref|XP_002301241.1| predicted protein [Populus trichocarpa] gi|222842967|gb|EEE80514.1| predicted protein [Populus trichocarpa]

 Score =  418 bits (1075), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/245 (90%), Positives = 225/245 (91%), Gaps = 10/245 (4%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKSQLD------ 64
           +IV GPLDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS         
Sbjct: 16  DIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSLQHHQQQLD 75

Query: 65  --HRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 122
               DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY
Sbjct: 76  HHRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 135

Query: 123 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 182
           IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL
Sbjct: 136 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 195

Query: 183 TSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 242
           TSKGM+AMLEKYKNYDFGRCPRVYCCGQPC PVGQSDIPRSSTVKIYCPKCEDIYYPRSK
Sbjct: 196 TSKGMSAMLEKYKNYDFGRCPRVYCCGQPCFPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 255

Query: 243 YQGSI 247
           YQG+I
Sbjct: 256 YQGNI 260

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118489558|gb|ABK96581.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  418 bits (1074), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 221/245 (90%), Positives = 225/245 (91%), Gaps = 10/245 (4%)

Query: 13  EIVAGPLDRKRINDALDKHLEKTSPSTSRAL--SSKDKERLSVPSTSAGKSQLD------ 64
           +IV GPLDRKRINDALDKHLEK+SPSTSR L  SSKDKERLSVPSTS GKS         
Sbjct: 16  DIVGGPLDRKRINDALDKHLEKSSPSTSRGLNNSSKDKERLSVPSTSTGKSLQHHQQQLD 75

Query: 65  --HRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 122
               DSRSASL KNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY
Sbjct: 76  HHRADSRSASLSKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEY 135

Query: 123 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 182
           IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL
Sbjct: 136 IQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYIL 195

Query: 183 TSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 242
           TSKGM+AMLEKYKNYDFGRCPRVYCCGQPC PVGQSDIPRSSTVKIYCPKCEDIYYPRSK
Sbjct: 196 TSKGMSAMLEKYKNYDFGRCPRVYCCGQPCFPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 255

Query: 243 YQGSI 247
           YQG+I
Sbjct: 256 YQGNI 260

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297828187|ref|XP_002881976.1| hypothetical protein ARALYDRAFT_483599 [Arabidopsis lyrata subsp. lyrata] gi|297327815|gb|EFH58235.1| hypothetical protein ARALYDRAFT_483599 [Arabidopsis lyrata subsp. lyrata]

 Score =  395 bits (1014), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 198/254 (77%), Positives = 214/254 (84%), Gaps = 20/254 (7%)

Query: 1   MYRDRGGGASKS-------EIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
           MY+DR GG           EI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  S 
Sbjct: 1   MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SF 58

Query: 54  PSTSAGKSQLDHRDSRSASLPKNKCSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNE 113
           PSTS  KSQL  R             D ESETDSE SDVSGS+GDDTSWISWFCNLRGNE
Sbjct: 59  PSTSTAKSQLHSRSP-----------DVESETDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query: 114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
           FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQNE+VESAAEMLY
Sbjct: 108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQNEMVESAAEMLY 167

Query: 174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
           GLIHVRYILT+KGMAAM+EKYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKC
Sbjct: 168 GLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKC 227

Query: 234 EDIYYPRSKYQGSI 247
           EDIYYPRSKYQG+I
Sbjct: 228 EDIYYPRSKYQGNI 241

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790971|ref|XP_002863370.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata] gi|297309205|gb|EFH39629.1| hypothetical protein ARALYDRAFT_494272 [Arabidopsis lyrata subsp. lyrata]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 199/250 (79%), Positives = 216/250 (86%), Gaps = 11/250 (4%)

Query: 1   MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVP-STSAG 59
           MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K   +   S   G
Sbjct: 1   MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTAATANSVLIG 52

Query: 60  KSQ-LDHRDSRSASLPKNK-CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCE 117
           K Q  DHRDSRSASL KN   SD+ES+TDSEESDVSGSDG+DTSWISWFCNLRGNEFFCE
Sbjct: 53  KQQSHDHRDSRSASLSKNNNVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNEFFCE 112

Query: 118 VDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIH 177
           VDD+YIQDDFNLCGLSS VPYY+YALDLILDVESSHG+MFTEEQNEL+ESAAEMLYGLIH
Sbjct: 113 VDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSHGEMFTEEQNELIESAAEMLYGLIH 172

Query: 178 VRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIY 237
            RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKCEDIY
Sbjct: 173 ARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKCEDIY 232

Query: 238 YPRSKYQGSI 247
           YPRSKYQG+I
Sbjct: 233 YPRSKYQGNI 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2042431	283	CKB4 "casein kinase II beta su	0.921	0.826	0.728	6.8e-95
TAIR|locus:2152002	287	CKB1 "casein kinase II beta ch	0.940	0.832	0.700	1.5e-90
TAIR|locus:2129316	282	CKB2 "casein kinase II beta ch	0.929	0.836	0.670	3.8e-85
TAIR|locus:2081937	276	CKB3 "casein kinase II beta ch	0.909	0.836	0.641	4.1e-81
UNIPROTKB|Q5SRQ6	234	CSNK2B "Casein kinase II subun	0.649	0.705	0.563	4.1e-49
UNIPROTKB|P67869	215	CSNK2B "Casein kinase II subun	0.551	0.651	0.65	6.7e-49
UNIPROTKB|P67868	215	CSNK2B "Casein kinase II subun	0.551	0.651	0.65	6.7e-49
UNIPROTKB|E2RP71	295	E2RP71 "Uncharacterized protei	0.551	0.474	0.65	6.7e-49
UNIPROTKB|P67870	215	CSNK2B "Casein kinase II subun	0.551	0.651	0.65	6.7e-49
UNIPROTKB|Q5SRQ3	228	CSNK2B "Casein kinase II subun	0.551	0.614	0.65	6.7e-49

TAIR|locus:2042431 CKB4 "casein kinase II beta subunit 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 944 (337.4 bits), Expect = 6.8e-95, P = 6.8e-95
 Identities = 185/254 (72%), Positives = 205/254 (80%)

Query:     1 MYRDR-------GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSV 53
             MY+DR       GGG+S+SEI+ G +DRKRINDALDKHL+K+SPSTSR  +SKDK+  SV
Sbjct:     1 MYKDRSGGGIMGGGGSSRSEILGGAIDRKRINDALDKHLKKSSPSTSRVFTSKDKD--SV 58

Query:    54 PSTSAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNE 113
             PSTS  KSQL H  SRS  +  +                         WISWFCNLRGNE
Sbjct:    59 PSTSTAKSQL-H--SRSPDVESD--------TDSEGSDVSGSEGDDTSWISWFCNLRGNE 107

Query:   114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
             FFCEVD++YIQDDFNLCGLS QVPYYDYALDLILDVESS+GDMFTEEQ+E+VESAAEMLY
Sbjct:   108 FFCEVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVESSNGDMFTEEQHEMVESAAEMLY 167

Query:   174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
             GLIHVRYILT+KGMAAM+EKYKNYDFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKC
Sbjct:   168 GLIHVRYILTTKGMAAMMEKYKNYDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKC 227

Query:   234 EDIYYPRSKYQGSI 247
             EDIYYPRSKYQG+I
Sbjct:   228 EDIYYPRSKYQGNI 241

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004674 "protein serine/threonine kinase activity" evidence=IMP

GO:0042753 "positive regulation of circadian rhythm" evidence=IMP

GO:0007623 "circadian rhythm" evidence=IMP

GO:0048573 "photoperiodism, flowering" evidence=IMP

TAIR|locus:2152002 CKB1 "casein kinase II beta chain 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 903 (322.9 bits), Expect = 1.5e-90, P = 1.5e-90
 Identities = 178/254 (70%), Positives = 197/254 (77%)

Query:     1 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
             MYRDRG   S+ E+V    DRKRINDAL    E+ SPSTSR ++ K K  ++  +T+A  
Sbjct:     1 MYRDRGTVNSRPEVV----DRKRINDAL----ERPSPSTSRQVNGKGKGTVTAATTTANL 52

Query:    59 -GKSQ---LDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXX-XXWISWFCNLRGNE 113
              GK Q   ++HRDSRSASL KN                          WISWFCNLRGNE
Sbjct:    53 IGKQQSNNINHRDSRSASLSKNNTVSDDESDTDSEESDVSGSDGEDTSWISWFCNLRGNE 112

Query:   114 FFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLY 173
             FFCEVDD+YIQDDFNLCGLSS VPYY+YALDLILDVESS G+MFTEEQNEL+ESAAEMLY
Sbjct:   113 FFCEVDDDYIQDDFNLCGLSSLVPYYEYALDLILDVESSQGEMFTEEQNELIESAAEMLY 172

Query:   174 GLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKC 233
             GLIH RYILTSKG+AAML+KYKNYDFGRCPRVYCCGQPCLPVGQSD+PRSSTVKIYCPKC
Sbjct:   173 GLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDLPRSSTVKIYCPKC 232

Query:   234 EDIYYPRSKYQGSI 247
             EDIYYPRSKYQG+I
Sbjct:   233 EDIYYPRSKYQGNI 246

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IGI;IDA

GO:0071900 "regulation of protein serine/threonine kinase activity" evidence=IDA

GO:0006468 "protein phosphorylation" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2129316 CKB2 "casein kinase II beta chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
 Identities = 169/252 (67%), Positives = 188/252 (74%)

Query:     1 MYRDRGGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPSTSA-- 58
             MYR+RG   SKSE+V    DRKRIN+    H  + S S S+ ++ K K    V STS   
Sbjct:     1 MYRERGMVGSKSEVV----DRKRINEI---HDNRPSHSMSQPVNGKGK----VTSTSVLM 49

Query:    59 GKSQL-DHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXX--XXWISWFCNLRGNEFF 115
             GK QL D   SRS S+ K                            WISWFCNLRGNEFF
Sbjct:    50 GKQQLHDKESSRSGSISKTNISDAVDISDTDSEESEVSGSDGEDTSWISWFCNLRGNEFF 109

Query:   116 CEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL 175
             CEVDD+YIQDDFNLCGLS QVPYYDYALDLILDVESSHG+MFTEEQNEL+ESAAEMLYG+
Sbjct:   110 CEVDDDYIQDDFNLCGLSHQVPYYDYALDLILDVESSHGEMFTEEQNELIESAAEMLYGM 169

Query:   176 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCED 235
             IH R+ILTSKG+A+ML+KYKNYDFGRCPRVYCCGQPCLPVGQSDIPR+STVKIYCPKCED
Sbjct:   170 IHARFILTSKGLASMLDKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRASTVKIYCPKCED 229

Query:   236 IYYPRSKYQGSI 247
             +YYPRSKYQG+I
Sbjct:   230 VYYPRSKYQGNI 241

GO:0005634 "nucleus" evidence=ISM

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=ISS

TAIR|locus:2081937 CKB3 "casein kinase II beta chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
 Identities = 161/251 (64%), Positives = 190/251 (75%)

Query:     1 MYRDR----GGGASKSEIVAGPLDRKRINDALDKHLEKTSPSTSRALSSKDKERLSVPST 56
             MY++R    GGG+S+SEI+ G +DRKRINDAL+K LEK+S ST+ +     K++     T
Sbjct:     1 MYKERSGGGGGGSSRSEILGGAIDRKRINDALNKKLEKSSTSTTTSRVFSSKDKDPFSFT 60

Query:    57 SAGKSQLDHRDSRSASLPKNKCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFC 116
             S  K+QL   +S + S                             WISWFCNLRGN+FFC
Sbjct:    61 ST-KTQLPDVESETDS---------------EGSDVSGSEGDDTSWISWFCNLRGNDFFC 104

Query:   117 EVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI 176
             EVD++YIQDDFNLCGLS QVPYYDYALDLILDV++S+ +MFT+EQ+E+VESAAEMLYGLI
Sbjct:   105 EVDEDYIQDDFNLCGLSGQVPYYDYALDLILDVDASNSEMFTDEQHEMVESAAEMLYGLI 164

Query:   177 HVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDI 236
             HVRYILT+KGMAAM EKYKN DFGRCPRV+CCGQ CLPVGQSDIPRSSTVKIYCPKCEDI
Sbjct:   165 HVRYILTTKGMAAMTEKYKNCDFGRCPRVFCCGQSCLPVGQSDIPRSSTVKIYCPKCEDI 224

Query:   237 YYPRSKYQGSI 247
              YPRSK+QG+I
Sbjct:   225 SYPRSKFQGNI 235

GO:0005956 "protein kinase CK2 complex" evidence=IEA;ISS;IDA

GO:0019887 "protein kinase regulator activity" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042752 "regulation of circadian rhythm" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=RCA

GO:0006396 "RNA processing" evidence=RCA

GO:0008134 "transcription factor binding" evidence=IDA

UNIPROTKB|Q5SRQ6 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 512 (185.3 bits), Expect = 4.1e-49, P = 4.1e-49
 Identities = 93/165 (56%), Positives = 111/165 (67%)

Query:    77 KCXXXXXXXXXXXXXXXXXXXXXXXWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQV 136
             KC                       WISWFC LRGNEFFCEVD++YIQD FNL GL+ QV
Sbjct:     3 KCKGTSRMAGTTSADVKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQV 62

Query:   137 PYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKN 196
             P+Y  ALD+ILD+E          Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+ 
Sbjct:    63 PHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQ 122

Query:   197 YDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRS 241
              DFG CPRVYC  QP LP+G SDIP  + VK+YCPKC D+Y P+S
Sbjct:   123 GDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKS 167

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

UNIPROTKB|P67869 CSNK2B "Casein kinase II subunit beta" [Gallus gallus (taxid:9031)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 91/140 (65%), Positives = 109/140 (77%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRS 241
               + VK+YCPKC D+Y P+S
Sbjct:   129 GEAMVKLYCPKCMDVYTPKS 148

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0031519 "PcG protein complex" evidence=ISS

UNIPROTKB|P67868 CSNK2B "Casein kinase II subunit beta" [Bos taurus (taxid:9913)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 91/140 (65%), Positives = 109/140 (77%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRS 241
               + VK+YCPKC D+Y P+S
Sbjct:   129 GEAMVKLYCPKCMDVYTPKS 148

GO:0031519 "PcG protein complex" evidence=ISS

GO:0061154 "endothelial tube morphogenesis" evidence=IEA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IEA

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IEA

GO:0019904 "protein domain specific binding" evidence=IEA

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|E2RP71 E2RP71 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 91/140 (65%), Positives = 109/140 (77%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRS 241
               + VK+YCPKC D+Y P+S
Sbjct:   129 GEAMVKLYCPKCMDVYTPKS 148

GO:0019887 "protein kinase regulator activity" evidence=IEA

GO:0005956 "protein kinase CK2 complex" evidence=IEA

UNIPROTKB|P67870 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 91/140 (65%), Positives = 109/140 (77%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRS 241
               + VK+YCPKC D+Y P+S
Sbjct:   129 GEAMVKLYCPKCMDVYTPKS 148

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007165 "signal transduction" evidence=TAS

GO:0005956 "protein kinase CK2 complex" evidence=NAS

GO:0019887 "protein kinase regulator activity" evidence=NAS

GO:0019904 "protein domain specific binding" evidence=IPI

GO:0031519 "PcG protein complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0033211 "adiponectin-mediated signaling pathway" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0004674 "protein serine/threonine kinase activity" evidence=TAS

GO:0032927 "positive regulation of activin receptor signaling pathway" evidence=IMP

GO:0010862 "positive regulation of pathway-restricted SMAD protein phosphorylation" evidence=IDA

GO:0043537 "negative regulation of blood vessel endothelial cell migration" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0043623 "cellular protein complex assembly" evidence=NAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

GO:0051101 "regulation of DNA binding" evidence=NAS

GO:0061154 "endothelial tube morphogenesis" evidence=IMP

GO:0045859 "regulation of protein kinase activity" evidence=NAS

UNIPROTKB|Q5SRQ3 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)]

 Score = 510 (184.6 bits), Expect = 6.7e-49, P = 6.7e-49
 Identities = 91/140 (65%), Positives = 109/140 (77%)

Query:   102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
             WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct:     9 WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68

Query:   162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
             ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct:    69 SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128

Query:   222 RSSTVKIYCPKCEDIYYPRS 241
               + VK+YCPKC D+Y P+S
Sbjct:   129 GEAMVKLYCPKCMDVYTPKS 148

GO:0005956 "protein kinase CK2 complex" evidence=IEA

GO:0019887 "protein kinase regulator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40228	CSK2B_ARATH	No assigned EC number	0.7795	0.9409	0.8327	no	no
P40229	CSK2C_ARATH	No assigned EC number	0.732	0.9370	0.8439	no	no
O80507	CSK2E_ARATH	No assigned EC number	0.7755	0.9212	0.8268	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00019032001 SubName- Full=Chromosome chr15 scaffold_19, whole genome shotgun sequence; (288 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
smart01085	184	smart01085, CK_II_beta, Casein kinase II regulator	8e-94
pfam01214	183	pfam01214, CK_II_beta, Casein kinase II regulatory	3e-90
PTZ00396	251	PTZ00396, PTZ00396, Casein kinase II subunit beta;	2e-79
COG5041	242	COG5041, SKB2, Casein kinase II, beta subunit [Sig	8e-66

>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit

 Score =  273 bits (700), Expect = 8e-94
 Identities = 92/147 (62%), Positives = 114/147 (77%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWI WFC+L+GNEFFCEVD+++I+DDFNL GL+S+VP Y  ALDLILD+E          
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDAS 60

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 220
           Q  L+ES+AE+LYGLIH RYILT +G+A MLEKYK  DFG CPRV+C GQP LPVG SD+
Sbjct: 61  QKSLIESSAELLYGLIHARYILTPRGLALMLEKYKRGDFGTCPRVFCNGQPLLPVGLSDV 120

Query: 221 PRSSTVKIYCPKCEDIYYPRSKYQGSI 247
           P  STVK+YCP+C+D+Y P+S    +I
Sbjct: 121 PGKSTVKLYCPRCQDVYTPKSSRHANI 147

Length = 184

>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit

 Score =  264 bits (676), Expect = 3e-90
 Identities = 89/147 (60%), Positives = 110/147 (74%), Gaps = 1/147 (0%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWI WFC+L+GNEFFCEVD++YI+DDFNL GLS +VP Y  ALDLILD E    +   ++
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDYIEDDFNLYGLSEEVPNYKEALDLILDKEPES-ESLDDD 59

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 220
           + E +E  AE LYGLIH RYILT KG+A M EKYK  +FG CPRV C GQP LP+G SD+
Sbjct: 60  KKEEIEKEAEKLYGLIHARYILTPKGLAQMKEKYKEGEFGTCPRVLCNGQPLLPIGLSDV 119

Query: 221 PRSSTVKIYCPKCEDIYYPRSKYQGSI 247
           P  STVK+YCP+C+D+Y P+S    +I
Sbjct: 120 PGESTVKLYCPRCQDVYNPKSSRHSNI 146

Length = 183

>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional

 Score =  239 bits (611), Expect = 2e-79
 Identities = 80/165 (48%), Positives = 109/165 (66%), Gaps = 6/165 (3%)

Query: 78  CSDEESETDSEESDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVP 137
            SDEES    E S+      +   WI WFC+L+G+EF CEVD+++I+D+FNL GL S+ P
Sbjct: 5   FSDEESSYSEEPSE------ESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFP 58

Query: 138 YYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNY 197
           +Y+ ALD+ILD E    +   +EQ   V   A  LYGLIH R+I T KG+A M EKY   
Sbjct: 59  FYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLIHARFITTPKGLALMREKYLQG 118

Query: 198 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSK 242
            FG CPRV C GQ  LP+G SD+ ++S VK+YCP+C+++Y+P+  
Sbjct: 119 KFGHCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKS 163

Length = 251

>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

 Score =  204 bits (520), Expect = 8e-66
 Identities = 87/170 (51%), Positives = 113/170 (66%), Gaps = 3/170 (1%)

Query: 79  SDEESETDSEE-SDVSGSDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVP 137
            +   E DS+  SD      +   WI WFC+ +GNE+FCEV +E+I+D FNL GLS +VP
Sbjct: 2   MENSLEDDSDNLSDDDSDSSEYDEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVP 61

Query: 138 YYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNY 197
           +Y   LDLILD  +        ++ +++E +A  LYGLIH RYI+T  G+ AMLEKYK+ 
Sbjct: 62  HYSEVLDLILDKLAP--SNLENDEVDIIEESARQLYGLIHARYIITKSGLQAMLEKYKSR 119

Query: 198 DFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSI 247
           +FG CPRVYC GQ  LPVG SDIP  S+VK+YCP CED+Y P+S    SI
Sbjct: 120 EFGACPRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSI 169

Length = 242

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG3092	216	consensus Casein kinase II, beta subunit [Signal t	100.0
PTZ00396	251	Casein kinase II subunit beta; Provisional	100.0
PF01214	184	CK_II_beta: Casein kinase II regulatory subunit; I	100.0
COG5041	242	SKB2 Casein kinase II, beta subunit [Signal transd	100.0

>KOG3092 consensus Casein kinase II, beta subunit [Signal transduction mechanisms; Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=100.00  E-value=1.3e-75  Score=512.99  Aligned_cols=156  Identities=71%  Similarity=1.234  Sum_probs=149.6

Q ss_pred             CCCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhh
Q 025330           95 SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYG  174 (254)
Q Consensus        95 s~~ed~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYG  174 (254)
                      +++++.+||+|||+++|||||||||+|||+|+|||+||+.+||+|++||++|||+++.++.+..+++.++||++|++|||
T Consensus         2 s~see~sWI~wFc~~~GnEffceVdeeyIqD~FNltgL~~~Vp~y~~ald~ILD~~~~~~~e~~~~~~~~iE~aae~LYG   81 (216)
T KOG3092|consen    2 SSSEEVSWISWFCGLRGNEFFCEVDEEYIQDRFNLTGLSEQVPNYRQALDLILDLEPDDELEDNAEQSELIESAAEMLYG   81 (216)
T ss_pred             CcccccchHHHHhcCCCCeeeEecCHHHhhhhhccccccccCchHHHHHHHhhcCCCCcccccchhHHHHHHHHHHHHHH
Confidence            34466679999999999999999999999999999999999999999999999999988777777778999999999999


Q ss_pred             hccccceeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330          175 LIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI  250 (254)
Q Consensus       175 LIHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~  250 (254)
                      |||||||||.+||++|++||++++||+||||+|++|+|||+||||+|++++||+|||+|+|||.|+|+++++|||+
T Consensus        82 LIHaRYIlT~~Gl~~M~eKy~~~dFG~CPRV~C~~q~~LPvGLsDipg~~~VklYCP~C~dvY~P~ssr~~~iDGa  157 (216)
T KOG3092|consen   82 LIHARYILTNRGLAAMLEKYKNGDFGRCPRVYCCGQPVLPVGLSDIPGKSTVKLYCPSCEDVYIPKSSRHGNIDGA  157 (216)
T ss_pred             hhhheeeechHHHHHHHHHHhcCCCCcCCcccccCCccccccccCCCCcceEEEeCCCcccccccccccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999996

>PTZ00396 Casein kinase II subunit beta; Provisional

Probab=100.00  E-value=8e-71  Score=497.64  Aligned_cols=154  Identities=48%  Similarity=0.952  Sum_probs=145.2

Q ss_pred             CCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhhhc
Q 025330           97 GDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLI  176 (254)
Q Consensus        97 ~ed~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYGLI  176 (254)
                      .++.+||+|||+++||+|||+||+|||+|+||||||+.+||+|++||+||||.+++.+...+++....++++|++|||||
T Consensus        18 ~~~~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLI   97 (251)
T PTZ00396         18 EESMGWIEWFCSLKGHEFLCEVDEDFIRDEFNLYGLKSKFPFYNEALDMILDSEPPDDEDLEDEQFLEVYQEASDLYGLI   97 (251)
T ss_pred             CCcCcHHHHHhCCCCCeeEEEeCHHHhcCcchhhCccccccCHHHHHHHHcCCCCCccccccchhHHHHHHHHHHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999876654445566788999999999999


Q ss_pred             cccceeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330          177 HVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI  250 (254)
Q Consensus       177 HARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~  250 (254)
                      |||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|++.++..|||+
T Consensus        98 HARyI~T~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSd~~g~~~VKlyCP~C~DvY~p~s~~~~~iDGA  171 (251)
T PTZ00396         98 HARFITTPKGLALMREKYLQGKFGHCPRVLCEGQNVLPIGLSDVLKTSRVKVYCPRCQEVYHPKKSSLLDIDGA  171 (251)
T ss_pred             hHhHhcCHHHHHHHHHHhhCCCCCCCCCccCCCCcccccccCCCcCcCceeEeCCCchhhcCCCCccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999887799996

>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=2.3e-70  Score=474.98  Aligned_cols=150  Identities=61%  Similarity=1.151  Sum_probs=126.9

Q ss_pred             ChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhhhccccc
Q 025330          101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVRY  180 (254)
Q Consensus       101 sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYGLIHARY  180 (254)
                      +||+|||+++||+||||||+|||+|+|||+||+.+||+|++||++|||.+.+.++..++.+.+.++++|++|||||||||
T Consensus         1 sWI~~F~~~~~~~~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaRy   80 (184)
T PF01214_consen    1 SWIDWFCSLKGNEFFCEVDEDYIEDSFNLYGLSSQVPNYDEALDMILDKEPDEDEESDDESDDEIEKSAEMLYGLIHARY   80 (184)
T ss_dssp             -HHHHHHHSTTTTT-----HHHHHSGGGGTTGGGTSTTHHHHHHHHTT----TTTTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHhCCCCCeEEEEeCHHHHhCcchhcChhhccccHHHHHHHHcCCCcccchhccchhHHHHHHHHHHHHhhhHHHH
Confidence            69999999999999999999999999999999999999999999999998776555666678889999999999999999


Q ss_pred             eeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330          181 ILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI  250 (254)
Q Consensus       181 IlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~  250 (254)
                      |+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++..|||+
T Consensus        81 I~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~lLPiGlsd~~g~~~vKlyCP~C~dvY~p~~~~~~~iDGA  150 (184)
T PF01214_consen   81 ILTPRGLEQMKEKYEQGDFGRCPRVYCNGQPLLPIGLSDTPGESTVKLYCPRCKDVYHPPSSRHSNIDGA  150 (184)
T ss_dssp             TTSHHHHHHHHHHHHTTTT-B-SBGGGTT-B-EEEBS-SSTTS-BBEEEETTTTEEE--SSGGGTTSBGG
T ss_pred             hhcHHHHHHHHHhhcCCcCCcCCcccCCCCceeCccCCCCCCccceeEECCCCccccCCCCccccceecc
Confidence            9999999999999999999999999999999999999999999999999999999999988999999997

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Casein kinase, a ubiquitous, well-conserved protein kinase involved in cell metabolism and differentiation, is characterised by its preference for Ser or Thr in acidic stretches of amino acids. The enzyme is a tetramer of 2 alpha- and 2 beta-subunits [, ]. However, some species (e.g., mammals) possess 2 related forms of the alpha-subunit (alpha and alpha'), while others (e.g., fungi) possess 2 related beta-subunits (beta and beta') []. The alpha-subunit is the catalytic unit and contains regions characteristic of serine/threonine protein kinases. The beta-subunit is believed to be regulatory, possessing an N-terminal auto-phosphorylation site, an internal acidic domain, and a potential metal-binding motif []. The beta subunit is a highly conserved protein of about 25kDa that contains, in its central section, a cysteine-rich motif, CX(n)C, that could be involved in binding a metal such as zinc []. The mammalian beta-subunit gene promoter shares common features with those of other mammalian protein kinases and is closely related to the promoter of the regulatory subunit of cAMP-dependent protein kinase [].; GO: 0019887 protein kinase regulator activity, 0005956 protein kinase CK2 complex; PDB: 2R6M_B 1RQF_K 1DS5_G 1QF8_B 3EED_A 4DGL_A 1JWH_D.

>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription]

Probab=100.00  E-value=5.9e-66  Score=455.86  Aligned_cols=149  Identities=55%  Similarity=1.077  Sum_probs=140.5

Q ss_pred             CChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhhhcccc
Q 025330          100 TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVR  179 (254)
Q Consensus       100 ~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYGLIHAR  179 (254)
                      ..||+|||+++||||||+||++||+|.|||+||+..||+|.+||++|||...+.  .+.+.+-+.||.+|+.||||||||
T Consensus        24 ~~Wi~~F~~rkg~eyfc~V~~efIeDrFNltgL~~~Vp~y~~~ldlILD~~~~~--~~e~~~~d~iE~sa~~LYgLIHaR  101 (242)
T COG5041          24 DEWIDWFCSRKGNEYFCEVPEEFIEDRFNLTGLSREVPHYSEVLDLILDKLAPS--NLENDEVDIIEESARQLYGLIHAR  101 (242)
T ss_pred             HHHHHHHHcCCCCeeeeeCCHHHHHhhhhccchhhccchHHHHHHHHHhccCCc--chhhhhhHHHHHHHHHHHHHHHhh
Confidence            379999999999999999999999999999999999999999999999987543  233334578999999999999999


Q ss_pred             ceeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330          180 YILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI  250 (254)
Q Consensus       180 YIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~  250 (254)
                      ||+|..||++|++||+.++||+||||+||+|+|||+||||+||+++||||||+|.|||.|+|+++..|||.
T Consensus       102 yIiT~~GL~~m~eKy~~~efG~CPRv~Cn~~~vLPvGLsDi~g~~~vkLyCpsC~dlY~p~Ssr~~~iDGa  172 (242)
T COG5041         102 YIITKSGLQAMLEKYKSREFGACPRVYCNGQQVLPVGLSDIPGKSSVKLYCPSCEDLYLPKSSRHQSIDGA  172 (242)
T ss_pred             heeeHHHHHHHHHHHhhcccCCCCcccccCcceeccccccCCCCceeEEecCchhhhcCcccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
1jwh_C	215	Crystal Structure Of Human Protein Kinase Ck2 Holoe		3e-52
1rqf_A	184	Structure Of Ck2 Beta Subunit Crystallized In The P		8e-52
3eed_A	193	Crystal Structure Of Human Protein Kinase Ck2 Regul		9e-52
1qf8_A	182	Truncated Form Of Casein Kinase Ii Beta Subunit (2-		7e-50

>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 215

Iteration: 1
 Score =  201 bits (511), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 109/140 (77%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
             + VK+YCPKC D+Y P+S
Sbjct: 129 GEAMVKLYCPKCMDVYTPKS 148

>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence Of A P21waf1 Peptide Length = 184

Iteration: 1
 Score =  200 bits (508), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 109/140 (77%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 15  WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 74
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 75  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 134
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
             + VK+YCPKC D+Y P+S
Sbjct: 135 GEAMVKLYCPKCMDVYTPKS 154

>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory Subunit (Ck2beta; Mutant 1-193) Length = 193

Iteration: 1
 Score =  199 bits (507), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 91/140 (65%), Positives = 109/140 (77%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
             + VK+YCPKC D+Y P+S
Sbjct: 129 GEAMVKLYCPKCMDVYTPKS 148

>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182) From Homo Sapiens Length = 182

Iteration: 1
 Score =  193 bits (491), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/140 (63%), Positives = 106/140 (75%)
Query: 102 WISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQ 161
           WISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD ILD+E          Q
Sbjct: 9   WISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDXILDLEPDEELEDNPNQ 68
Query: 162 NELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIP 221
           ++L+E AAE LYGLIH RYILT++G+A  LEKY+  DFG CPRVYC  QP LP+G SDIP
Sbjct: 69  SDLIEQAAEXLYGLIHARYILTNRGIAQXLEKYQQGDFGYCPRVYCENQPXLPIGLSDIP 128
Query: 222 RSSTVKIYCPKCEDIYYPRS 241
             + VK+YCPKC D+Y P+S
Sbjct: 129 GEAXVKLYCPKCXDVYTPKS 148

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	2e-84
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	5e-84

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215

 Score =  250 bits (640), Expect = 2e-84
 Identities = 93/153 (60%), Positives = 113/153 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSI 247
           +G SDIP  + VK+YCPKC D+Y P+S      
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHT 154

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182

 Score =  247 bits (633), Expect = 5e-84
 Identities = 93/153 (60%), Positives = 113/153 (73%)

Query: 95  SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHG 154
           S  ++ SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E    
Sbjct: 2   SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEE 61

Query: 155 DMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLP 214
                 Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP
Sbjct: 62  LEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLP 121

Query: 215 VGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSI 247
           +G SDIP  + VK+YCPKC D+Y P+S      
Sbjct: 122 IGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHT 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
1qf8_A	182	Casein kinase II; casein kinase beta subunit (1-18	100.0
4dgl_A	215	Casein kinase II subunit beta; protein kinase, tra	100.0

>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A

Probab=100.00  E-value=2.8e-75  Score=504.62  Aligned_cols=155  Identities=59%  Similarity=1.093  Sum_probs=141.0

Q ss_pred             CCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhhh
Q 025330           96 DGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGL  175 (254)
Q Consensus        96 ~~ed~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYGL  175 (254)
                      ++++.+||+|||+++||+||||||+|||+|+|||+||+.+||+|++||+||||.++..+..++.++.+.++++|++||||
T Consensus         3 ~~~~~sWI~wF~~~~gneffceVd~dyI~D~FNL~GL~~~vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~a~~LYGL   82 (182)
T 1qf8_A            3 SSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGL   82 (182)
T ss_dssp             ----CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHH
T ss_pred             CCccCcHHHHHhCCCCCeEEEEeCHHHhcCcchhhCccccccCHHHHHHHHhCCCCccccccchhhhHHHHHHHHHHhch
Confidence            44677899999999999999999999999999999999999999999999999987655444455678899999999999


Q ss_pred             ccccceeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330          176 IHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI  250 (254)
Q Consensus       176 IHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~  250 (254)
                      ||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++++|||+
T Consensus        83 IHaRyIlT~~Gl~~M~eKy~~g~FG~CPRv~C~~q~~LPvGlSd~pg~~~VKlyCP~C~DvY~p~s~~~~~iDGA  157 (182)
T 1qf8_A           83 IHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGA  157 (182)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGG
T ss_pred             hhhhhcccHHHHHHHHHhhhcCcCCCCCccccCCCcccCCccCCCCCCCceEEECCCccceeCCCcccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999997

>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E*

Probab=100.00  E-value=6.5e-75  Score=513.10  Aligned_cols=156  Identities=60%  Similarity=1.091  Sum_probs=138.4

Q ss_pred             CCCCCCChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhh
Q 025330           95 SDGDDTSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYG  174 (254)
Q Consensus        95 s~~ed~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYG  174 (254)
                      |++++.+||+|||+++||+||||||+|||+|+|||+||+.+||+|++||+||||.+++++.+.+..+.+.++++|++|||
T Consensus         2 s~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~~~~~~ie~~A~~LYG   81 (215)
T 4dgl_A            2 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYG   81 (215)
T ss_dssp             ------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CTTHHHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccchhHHHHHHHHHHHhh
Confidence            45567899999999999999999999999999999999999999999999999998765444445567789999999999


Q ss_pred             hccccceeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330          175 LIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI  250 (254)
Q Consensus       175 LIHARYIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~  250 (254)
                      |||||||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||||||+|+|||+|++.++++|||+
T Consensus        82 LIHARYIlT~~Gl~~M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~s~r~~~iDGA  157 (215)
T 4dgl_A           82 LIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGA  157 (215)
T ss_dssp             HHHHHHTTSHHHHHHHHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCSSTTSTTSBGG
T ss_pred             hhhHhheecHHHHHHHHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCCcccccccccc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1qf8a_	173	g.41.4.1 (A:) Casein kinase II beta subunit {Human	6e-83

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  243 bits (622), Expect = 6e-83
 Identities = 92/147 (62%), Positives = 110/147 (74%)

Query: 101 SWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEE 160
           SWISWFC LRGNEFFCEVD++YIQD FNL GL+ QVP+Y  ALD+ILD+E          
Sbjct: 2   SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN 61

Query: 161 QNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDI 220
           Q++L+E AAEMLYGLIH RYILT++G+A MLEKY+  DFG CPRVYC  QP LP+G SDI
Sbjct: 62  QSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDI 121

Query: 221 PRSSTVKIYCPKCEDIYYPRSKYQGSI 247
           P  + VK+YCPKC D+Y P+S      
Sbjct: 122 PGEAMVKLYCPKCMDVYTPKSSRHHHT 148

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1qf8a_	173	Casein kinase II beta subunit {Human (Homo sapiens	100.0

>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-72  Score=483.01  Aligned_cols=151  Identities=61%  Similarity=1.108  Sum_probs=140.2

Q ss_pred             CChHHHHhCCCCCeeEEecCcccccCCCccCCCCCCCCCHHHHHHHHcCCCCCCCCCCchHHHHHHHHHHHHHhhhcccc
Q 025330          100 TSWISWFCNLRGNEFFCEVDDEYIQDDFNLCGLSSQVPYYDYALDLILDVESSHGDMFTEEQNELVESAAEMLYGLIHVR  179 (254)
Q Consensus       100 ~sWI~wFcsl~gneffceVDedYI~D~FNL~GL~~~Vp~Y~~ALd~ILd~e~~~~d~~~~~~~~~ie~~A~~LYGLIHAR  179 (254)
                      .|||+|||+++||+|||+||+|||+|+||||||+++||+|++||++|||.+++.+...+..+.+.++++|+.||||||||
T Consensus         1 ~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~~~~~i~~~a~~LYGLIHaR   80 (173)
T d1qf8a_           1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPNQSDLIEQAAEMLYGLIHAR   80 (173)
T ss_dssp             CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHhCCCCCeEEEEeCHHHHcCcchhcCchhccccHHHHHHHHhccCCChhhhhhhhhhHHHHHHHHHHHHHhhhh
Confidence            48999999999999999999999999999999999999999999999999876654444456677999999999999999


Q ss_pred             ceeChHHHHHHHHhhhcCCCCCCCcccCCCCCccccccCCCCCCccceeeCCCCCccccCCCCCCcCCccc
Q 025330          180 YILTSKGMAAMLEKYKNYDFGRCPRVYCCGQPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGSILKI  250 (254)
Q Consensus       180 YIlT~~GL~~M~eKY~~g~FG~CPRv~C~gq~lLPiGlSD~pg~stVKlYCP~C~DVY~P~s~~~~~IDG~  250 (254)
                      ||+|++||++|++||++|+||+||||+|++|+|||||+||+||+++||+|||+|+|||+|++.++++|||+
T Consensus        81 yI~T~~Gl~~m~eKy~~g~FG~CPRv~C~~~~~LPiGlSd~~g~~~vKlyCP~C~dvY~p~s~~~~~iDGA  151 (173)
T d1qf8a_          81 YILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPKSSRHHHTDGA  151 (173)
T ss_dssp             HTTSHHHHHHHHHHHHTTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECCSSGGGTTSBGG
T ss_pred             eeecHhHHHHHHHHHhCCCCCCCCCcccCCCcccccccCCCCCcCcceEECCChhhccCCCCcccCcccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999997