Citrus Sinensis ID: 025351

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MEACSYSSTSSSESSSSESSLSGNNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPPGGSSSININDSSAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGFH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHccccccHHHHHHHccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEccccccccccccccccccccccHccccccccccHHHHHHHHHHHHHHccccHHHHHHccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHcccHHHHHcccccccHHHHHHHHHcccccHHHHcccccccccccccccHccccccccccccccccccccccccccccccHccHHHHHHccccccccccccccccccccccccccccccHHHHHHcHcHHHHccccccccccccccc
Coil and Loop (DISEMBL)
meacsysstsssessssesslsgnnktrrathkperikgpwsaeEDRILTRLVErygprnwsLISRYIkgrsgkscrlrwcnqlspsvahrpfspaeddTILAAHARFGNRWATIARLlpgrtdnavkNHWNSTLkrrtrehpvqmqphqqqQLMDsvdnggdnnndneniglggfavsgshhqqqqCMGLEDDAltaltlgppggsssinindssaerteslpagfWDAMRGVIAREVRDYMsstlsgtsgfh
Flexible Loop (DISEMBL)
meacsysstsssessssesslsgnnktrrathkperikgpwsaeedRILTRlverygprnwslisryikgrsgkscRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARllpgrtdnavknHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPPGGSSSININDSSAERTESLPAGFWDAMRGVIAREVRDYMsstlsgtsgfh
Low Complexity Region (SEG)
MEACsysstsssessssesslsGNNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREhpvqmqphqqqqLMDSVdnggdnnndneniglggFAVSGSHHQQQQCMGLEDDALTALTLGPPggsssinindssAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGFH
Disordered region (IsUnstruct)
*********************************************DRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHW*********************************************************************************************AGFWDAMRGVIAREVR**************
Disordered Region (DISOPRED)
****************************************WSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLK*******************************************************************************************WDA******************G**G**
Disordered Region (DISEMBL)
************************************IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR****************LMDSVDNGGDNNNDNENIGLGGFAVS*********MGLEDDALTALTLGPPGGSSSININDSSAERTESLPAGFWDAMRGVIAREVRDYMS**********
Disordered Region (DISPRO)
********T*S********S*SGNNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPV*************************************************************************ERTESLPAGFWDAMRGVIAREVR**************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEACSYSSTSSSESSSSESSLSGNNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPPGGSSSININDSSAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGFH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q9FDW1	305	Transcription factor MYB4	no	no	0.409	0.340	0.778	2e-44
P52550	757	Myb-related protein A OS=	yes	no	0.425	0.142	0.574	2e-35
Q08759	624	Transcriptional activator	N/A	no	0.413	0.168	0.590	6e-35
P10243	752	Myb-related protein A OS=	yes	no	0.425	0.143	0.564	1e-34
P06876	636	Transcriptional activator	no	no	0.472	0.188	0.525	1e-34
P10242	640	Transcriptional activator	no	no	0.425	0.168	0.564	1e-34
P51960	751	Myb-related protein A OS=	yes	no	0.429	0.145	0.559	2e-34
P46200	640	Transcriptional activator	no	no	0.425	0.168	0.564	2e-34
P01103	641	Transcriptional activator	no	no	0.425	0.168	0.564	2e-34
Q05935	728	Myb-related protein A OS=	N/A	no	0.425	0.148	0.555	3e-34

>sp|Q9FDW1|MYB44_ARATH Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1

 Score =  179 bits (453), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 90/104 (86%)

Query: 35  ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
           +RIKGPWS EED  L RLV +YGPRNW++IS+ I GRSGKSCRLRWCNQLSP V HRPFS
Sbjct: 3   DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query: 95  PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
             ED+TI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct: 63  AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

Transcription factor. Represses the expression of protein phosphatases 2C in response to abscisic acid (ABA). Confers resistance to abiotic stresses dependent of ABA.
Arabidopsis thaliana (taxid: 3702)

>sp|P52550|MYBA_CHICK Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1

 Score =  149 bits (375), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 82/108 (75%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV++YGP+ WSLI++++KGR GK CR RW N L+P V    +
Sbjct: 83  PELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSW 142

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           + AED  I  AH R GNRWA IA+LLPGRTDN++KNHWNST++R+  +
Sbjct: 143 TEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Gallus gallus (taxid: 9031)

>sp|Q08759|MYB_XENLA Transcriptional activator Myb OS=Xenopus laevis GN=myb PE=2 SV=1

 Score =  147 bits (372), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 80/105 (76%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV +YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct: 85  PELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSW 144

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
           +  ED TI  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 145 TEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Xenopus laevis (taxid: 8355)

>sp|P10243|MYBA_HUMAN Myb-related protein A OS=Homo sapiens GN=MYBL1 PE=1 SV=2

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 81/108 (75%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV++YGP+ WSLI++++KGR GK CR RW N L+P V    +
Sbjct: 83  PELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSW 142

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           +  ED  I  AH R GNRWA IA+LLPGRTDN++KNHWNST++R+  +
Sbjct: 143 TEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQ 190

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Homo sapiens (taxid: 9606)

>sp|P06876|MYB_MOUSE Transcriptional activator Myb OS=Mus musculus GN=Myb PE=1 SV=2

 Score =  146 bits (369), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 63/120 (52%), Positives = 85/120 (70%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct: 88  PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 147

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQ 153
           +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+  +     +P +  Q
Sbjct: 148 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQEGYLQEPSKASQ 207

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Mus musculus (taxid: 10090)

>sp|P10242|MYB_HUMAN Transcriptional activator Myb OS=Homo sapiens GN=MYB PE=1 SV=2

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 81/108 (75%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct: 88  PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 147

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+  +
Sbjct: 148 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Homo sapiens (taxid: 9606)

>sp|P51960|MYBA_MOUSE Myb-related protein A OS=Mus musculus GN=Mybl1 PE=2 SV=2

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 61/109 (55%), Positives = 81/109 (74%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV++YGP+ WSLI++++KGR GK CR RW N L+P V    +
Sbjct: 83  PELIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKGRIGKQCRERWHNHLNPEVKKSSW 142

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREH 142
           +  ED  I  AH R GNRWA IA+LLPGRTDN++KNHWNST++R+  + 
Sbjct: 143 TEEEDRIIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKVEQE 191

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Mus musculus (taxid: 10090)

>sp|P46200|MYB_BOVIN Transcriptional activator Myb OS=Bos taurus GN=MYB PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 81/108 (75%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct: 88  PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 147

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+  +
Sbjct: 148 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Bos taurus (taxid: 9913)

>sp|P01103|MYB_CHICK Transcriptional activator Myb OS=Gallus gallus GN=MYB PE=2 SV=1

 Score =  145 bits (367), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 61/108 (56%), Positives = 81/108 (75%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct: 88  PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 147

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+  +
Sbjct: 148 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

Transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Plays an important role in the control of proliferation and differentiation of hematopoietic progenitor cells.

Gallus gallus (taxid: 9031)

>sp|Q05935|MYBA_XENLA Myb-related protein A OS=Xenopus laevis GN=mybl1 PE=2 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 60/108 (55%), Positives = 81/108 (75%)

Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE +KGPW+ EED+ +  LV +YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct: 82  PELVKGPWTKEEDQRVIELVHKYGPKKWSIIAKHLKGRIGKQCRERWHNHLNPDVKKSSW 141

Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           +  ED  I +AH R GNRWA IA+LLPGRTDN++KNHWNST+KR+  +
Sbjct: 142 TEEEDRIIYSAHKRMGNRWAEIAKLLPGRTDNSIKNHWNSTMKRKVEQ 189

Strong transcriptional activator; DNA-binding protein that specifically recognize the sequence 5'-YAAC[GT]G-3'. Could have a role in the proliferation and/or differentiation of neurogenic, spermatogenic and B-lymphoid cells.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
224137362	248	predicted protein [Populus trichocarpa]	0.960	0.983	0.674	3e-75
255538416	247	r2r3-myb transcription factor, putative	0.846	0.870	0.638	1e-74
449524886	242	PREDICTED: transcriptional activator Myb	0.838	0.880	0.642	2e-73
449470041	242	PREDICTED: transcriptional activator Myb	0.862	0.904	0.641	3e-73
225458515	216	PREDICTED: transcriptional activator Myb	0.732	0.861	0.650	7e-72
224063553	237	predicted protein [Populus trichocarpa]	0.834	0.894	0.634	4e-71
327412659	256	putative MYB transcription factor [Rosa	0.862	0.855	0.627	2e-70
327412631	253	putative MYB transcription factor [Rosa	0.826	0.830	0.619	4e-70
351721300	221	MYB transcription factor MYB124 [Glycine	0.775	0.891	0.614	3e-69
449446967	229	PREDICTED: myb-related protein A-like [C	0.755	0.838	0.601	3e-66

>gi|224137362|ref|XP_002327107.1| predicted protein [Populus trichocarpa] gi|222835422|gb|EEE73857.1| predicted protein [Populus trichocarpa]

 Score =  287 bits (735), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 174/258 (67%), Positives = 193/258 (74%), Gaps = 14/258 (5%)

Query: 1   MEACSYSSTSSSESSSSESSLSGNNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRN 60
           MEA +  STSSS+SSSSESS +GN KT R+T+K ERIKGPWSAEEDRILTRLVE++GPRN
Sbjct: 1   MEAVNMCSTSSSDSSSSESSFNGN-KTPRSTNKSERIKGPWSAEEDRILTRLVEQHGPRN 59

Query: 61  WSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLP 120
           WSLISRYIKGRSGKSCRLRWCNQLSP+V HRPFSP ED+TILAAHARFGNRWATIARLLP
Sbjct: 60  WSLISRYIKGRSGKSCRLRWCNQLSPNVQHRPFSPVEDETILAAHARFGNRWATIARLLP 119

Query: 121 GRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGDNNNDNENIGLGGFAVSG 180
           GRTDNAVKNHWNSTLKRR RE   QM       L  + D+   NNN NE I +     SG
Sbjct: 120 GRTDNAVKNHWNSTLKRRARERQSQM------NLEGNFDSNYGNNN-NEGIAIDINVASG 172

Query: 181 SHHQQQQCMGLEDDALTALTLGPPGGSSSININDS---SAERTESLPAGFWDAMRGVIAR 237
           S       M  E+DALT LTL PPG    ++ N     +  R ESLPAGFWD MR VIAR
Sbjct: 173 S--MPDGIMREEEDALTTLTLAPPGIGGGVSGNSGGMVAERRPESLPAGFWDVMRDVIAR 230

Query: 238 EVRDYM-SSTLSGTSGFH 254
           EVRDY+ S+    +SGFH
Sbjct: 231 EVRDYVSSTLSESSSGFH 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538416|ref|XP_002510273.1| r2r3-myb transcription factor, putative [Ricinus communis] gi|223550974|gb|EEF52460.1| r2r3-myb transcription factor, putative [Ricinus communis]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/238 (63%), Positives = 173/238 (72%), Gaps = 23/238 (9%)

Query: 25  NKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL 84
           N T R+++KPERIKGPWSAEEDRILTRLVER+GPRNWS ISRYIKGRSGKSCRLRWCNQL
Sbjct: 25  NNTPRSSNKPERIKGPWSAEEDRILTRLVERHGPRNWSSISRYIKGRSGKSCRLRWCNQL 84

Query: 85  SPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPV 144
           SP+V HRPFSPAED TILAAHAR+GNRWATIARLLPGRTDNAVKNHWNSTLKR+ +E   
Sbjct: 85  SPNVEHRPFSPAEDQTILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRKAKE--- 141

Query: 145 QMQPHQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPP 204
                QQ Q+M        N + NE I +   + +GS   +      E+D LTALTL PP
Sbjct: 142 -----QQHQMMIE-----SNFDHNEGIIVAVESSAGSIMPRMAVQ--EEDVLTALTLAPP 189

Query: 205 GGSSSININDSSA-------ERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTS-GFH 254
           G       +  +         R ESLP+GFWD MR VIAREVR+YMSS+L+ TS GFH
Sbjct: 190 GIGGGSGGDSGTNGGGMVADNRAESLPSGFWDVMRNVIAREVREYMSSSLNETSPGFH 247

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449524886|ref|XP_004169452.1| PREDICTED: transcriptional activator Myb-like [Cucumis sativus]

 Score =  281 bits (719), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/232 (64%), Positives = 169/232 (72%), Gaps = 19/232 (8%)

Query: 29  RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
           +   +PE+IKGPWSAEEDRILT+LV+RYG RNWSLISRYIKGRSGKSCRLRWCNQLSP+V
Sbjct: 24  KGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNV 83

Query: 89  AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQP 148
            HRPFSP ED+TILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR RE     Q 
Sbjct: 84  EHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARE-----QQ 138

Query: 149 HQQQQLMDSVD---NGGDNNNDNENIGLGG---FAVSGSHHQQQQCMGLEDDALTALTLG 202
           H QQ +MD +    +G  NNN+N  + +      +VS S       + LEDD LTALTL 
Sbjct: 139 HHQQLVMDGITPECHGISNNNNNNAVNIASDLKLSVSVS-------VPLEDDPLTALTLA 191

Query: 203 PPGGSSSININDSSAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGFH 254
           PP G   +    +   R ES PAGFWDAMR VIAREVR+YM++T      F 
Sbjct: 192 PP-GIGGVRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFQ 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470041|ref|XP_004152727.1| PREDICTED: transcriptional activator Myb-like [Cucumis sativus]

 Score =  280 bits (717), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 145/226 (64%), Positives = 163/226 (72%), Gaps = 7/226 (3%)

Query: 29  RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
           +   +PE+IKGPWSAEEDRILT+LV+RYG RNWSLISRYIKGRSGKSCRLRWCNQLSP+V
Sbjct: 24  KGLRRPEKIKGPWSAEEDRILTQLVDRYGARNWSLISRYIKGRSGKSCRLRWCNQLSPNV 83

Query: 89  AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQP 148
            HRPFSP ED+TILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR RE     Q 
Sbjct: 84  EHRPFSPTEDETILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRARE-----QQ 138

Query: 149 HQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPPGGSS 208
           H QQ +MD +       ++N N  +   A S         + LEDD LTALTL PP G  
Sbjct: 139 HHQQLVMDGITPECHGISNNNNNNVVNIA-SDLKLSVSVSVPLEDDPLTALTLAPP-GIG 196

Query: 209 SININDSSAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGFH 254
            +    +   R ES PAGFWDAMR VIAREVR+YM++T      F 
Sbjct: 197 GVRTTAAEERRVESFPAGFWDAMRDVIAREVREYMTTTFMENPEFQ 242

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458515|ref|XP_002284237.1| PREDICTED: transcriptional activator Myb [Vitis vinifera]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 145/223 (65%), Positives = 156/223 (69%), Gaps = 37/223 (16%)

Query: 32  HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHR 91
           +K ERIKG WSAEEDR+LTRLVERYG RNWSLISRYIKGRSGKSCRLRWCNQLSPSV HR
Sbjct: 29  NKSERIKGSWSAEEDRVLTRLVERYGARNWSLISRYIKGRSGKSCRLRWCNQLSPSVEHR 88

Query: 92  PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQ 151
           PFS AEDDTILAAHAR+GNRWATIARLLPGRTDNAVKNHWNSTLK+R RE   QM+    
Sbjct: 89  PFSAAEDDTILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKKRQREQSQQME---- 144

Query: 152 QQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPPGGSSSIN 211
                                  G + SGS+        +E D +T L+L PPG   S  
Sbjct: 145 -----------------------GPSGSGSYPD------MEPDPITTLSLAPPGAHGST- 174

Query: 212 INDSSAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGFH 254
                  R ES P GFWDAMRGVIAREVRDYM+STLS  SGFH
Sbjct: 175 ---PEERRAESFPEGFWDAMRGVIAREVRDYMTSTLSEASGFH 214

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063553|ref|XP_002301201.1| predicted protein [Populus trichocarpa] gi|222842927|gb|EEE80474.1| predicted protein [Populus trichocarpa]

 Score =  273 bits (699), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 144/227 (63%), Positives = 170/227 (74%), Gaps = 15/227 (6%)

Query: 24  NNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ 83
           +NKT R+T K  RIKGPWS+EED ILT LVER+GP+NWSLISRYIKGRSGKSCRLRWCNQ
Sbjct: 23  DNKTPRSTDKSARIKGPWSSEEDMILTGLVERHGPKNWSLISRYIKGRSGKSCRLRWCNQ 82

Query: 84  LSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHP 143
           LSP+V HRPFSPAED+ IL AHAR+GNRWATIARLLPGRTDNAVKNHWNSTLKRR R+  
Sbjct: 83  LSPNVEHRPFSPAEDEAILVAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRARQRQ 142

Query: 144 VQMQPHQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGP 203
            QM       L  + D+   NN +  +I +   +++    ++      E+DALTALTL P
Sbjct: 143 SQM------NLEGNFDSNYGNNYECIDINMTPGSMADGMVRE------EEDALTALTLAP 190

Query: 204 PGGSSSININDSS--AERT-ESLPAGFWDAMRGVIAREVRDYMSSTL 247
           PG   ++  ++     ERT ESLPAGFWD MR VIAREVR+Y+SSTL
Sbjct: 191 PGIGGAVCGSNGGMVVERTAESLPAGFWDVMRDVIAREVREYVSSTL 237

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412659|emb|CCA29118.1| putative MYB transcription factor [Rosa hybrid cultivar]

 Score =  271 bits (694), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 148/236 (62%), Positives = 161/236 (68%), Gaps = 17/236 (7%)

Query: 29  RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
           R  +K ERIKGPWSAEEDR+LTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV
Sbjct: 28  RNPNKAERIKGPWSAEEDRVLTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 87

Query: 89  AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQP 148
            HRPFS AED+TILAAHAR+GNRWATIARLLPGRTDNAVKNHWNSTLKRR RE      P
Sbjct: 88  QHRPFSQAEDETILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRE------P 141

Query: 149 HQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLE-----DDALTALTLGP 203
              Q+L D    G   N   E + +G    + +        G       DD LT LTL  
Sbjct: 142 QDHQEL-DHQGEGNIGNAAIEVMMMGNTTTTTTTSSASAASGRNGSMDLDDPLTELTLAT 200

Query: 204 PGGSSSININDSSAERTESL-----PAGFWDAMRGVIAREVRDYMSSTLSGTSGFH 254
           PG   S+  +        S      PAGFWD MRGVIAREVRDY+SS+ S TSG H
Sbjct: 201 PGIGGSVVSSSEQHHHHRSSSESFPPAGFWDVMRGVIAREVRDYVSSSFSETSGLH 256

Source: Rosa hybrid cultivar

Species: Rosa hybrid cultivar

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327412631|emb|CCA29104.1| putative MYB transcription factor [Rosa rugosa]

 Score =  270 bits (690), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 150/242 (61%), Positives = 166/242 (68%), Gaps = 32/242 (13%)

Query: 29  RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
           R  +K ERIKGPWSAEEDR+LTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV
Sbjct: 28  RNPNKAERIKGPWSAEEDRVLTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 87

Query: 89  AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQP 148
            HRPFS AED+TILAAHAR+GNRWATIARLLPGRTDNAVKNHWNSTLKRR RE      P
Sbjct: 88  QHRPFSQAEDETILAAHARYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVRE------P 141

Query: 149 HQQQQLMDSVDNGGDNNNDNENIGLGGFAV-----------SGSHHQQQQCMGLEDDALT 197
              Q+L    D+ G+      NIG+    V           + +   +   M L DD LT
Sbjct: 142 QDHQEL----DHQGEG-----NIGIAAIEVMMMGNTTTTSSASAASGRNGSMDL-DDPLT 191

Query: 198 ALTLGPPGGSSSININDSSAERTESL-----PAGFWDAMRGVIAREVRDYMSSTLSGTSG 252
            LTL  PG   S+  +       +S      PAGFWD MRGVIAREVRDY+SS+ S TSG
Sbjct: 192 ELTLATPGIGGSVVSSSEQHHHHQSSSESFPPAGFWDVMRGVIAREVRDYVSSSFSETSG 251

Query: 253 FH 254
            H
Sbjct: 252 LH 253

Source: Rosa rugosa

Species: Rosa rugosa

Genus: Rosa

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721300|ref|NP_001235925.1| MYB transcription factor MYB124 [Glycine max] gi|110931710|gb|ABH02854.1| MYB transcription factor MYB124 [Glycine max]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 137/223 (61%), Positives = 153/223 (68%), Gaps = 26/223 (11%)

Query: 32  HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHR 91
           +KP+RIKGPWSAEEDRILT LVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP+V HR
Sbjct: 25  NKPDRIKGPWSAEEDRILTGLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHR 84

Query: 92  PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQ 151
           PFS  EDDTI+AAHA++GNRWATIARLLPGRTDNAVKNHWNSTLKRR +           
Sbjct: 85  PFSAQEDDTIIAAHAQYGNRWATIARLLPGRTDNAVKNHWNSTLKRRAK----------- 133

Query: 152 QQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPPGGSSSIN 211
                           N N+      V+ S     +    EDD LTALTL PPG ++   
Sbjct: 134 --------------GININVNHANNEVAASSSAPSRHFDFEDDPLTALTLAPPGIANGTV 179

Query: 212 INDSSAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGFH 254
             D+  +   S P GFWD MR VIAREVR+Y+SS  S  SGFH
Sbjct: 180 AEDAVPDHRAS-PEGFWDMMRDVIAREVREYVSSNFSDNSGFH 221

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446967|ref|XP_004141241.1| PREDICTED: myb-related protein A-like [Cucumis sativus]

 Score =  257 bits (657), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 133/221 (60%), Positives = 152/221 (68%), Gaps = 29/221 (13%)

Query: 35  ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
           ++IKGPWSAEEDRILTRLVERYGPRNWSLISRY+KGRSGKSCRLRWCNQL P V HRPFS
Sbjct: 35  DKIKGPWSAEEDRILTRLVERYGPRNWSLISRYVKGRSGKSCRLRWCNQLCPGVEHRPFS 94

Query: 95  PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQL 154
           PAEDD I+AAH+R+GNRWATIARLLPGRTDNAVKNHWNSTLKRR R              
Sbjct: 95  PAEDDAIVAAHSRYGNRWATIARLLPGRTDNAVKNHWNSTLKRRVR-------------- 140

Query: 155 MDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQCMGLEDDALTALTLGPPGGSSSININD 214
            D   N   N+  +   G G F            + ++DD LTALTL  PG         
Sbjct: 141 -DDRRNSSSNHTSDVVGGGGSF------------LAVDDDPLTALTLATPGNVGGGGGEV 187

Query: 215 --SSAERTESLPAGFWDAMRGVIAREVRDYMSSTLSGTSGF 253
              S  R+E+LPAGFW+ M+ V+AREVR+YM++T S   GF
Sbjct: 188 VRESDRRSENLPAGFWEVMKDVVAREVREYMTTTFSENRGF 228

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2083113	301	MYB77 "myb domain protein 77"	0.409	0.345	0.778	8.6e-47
TAIR|locus:2115060	320	MYB73 "myb domain protein 73"	0.440	0.35	0.730	6e-46
TAIR|locus:2058613	309	MYB70 "myb domain protein 70"	0.429	0.352	0.745	2e-45
TAIR|locus:2158212	305	MYBR1 "AT5G67300" [Arabidopsis	0.409	0.340	0.778	1.4e-44
TAIR|locus:2078961	399	MYB109 "myb domain protein 109	0.405	0.258	0.679	7e-38
TAIR|locus:2083489	393	MYB1 "myb domain protein 1" [A	0.409	0.264	0.663	3.9e-37
TAIR|locus:2061242	367	MYB25 "myb domain protein 25"	0.417	0.288	0.632	1.2e-35
UNIPROTKB|E9PIW4	385	MYB "Transcriptional activator	0.425	0.280	0.564	5.2e-33
UNIPROTKB|E9PJ96	364	MYB "Transcriptional activator	0.425	0.296	0.564	5.2e-33
UNIPROTKB|E9PKZ3	446	MYB "Transcriptional activator	0.425	0.242	0.564	5.2e-33

TAIR|locus:2083113 MYB77 "myb domain protein 77" [Arabidopsis thaliana (taxid:3702)]

 Score = 458 (166.3 bits), Expect = 8.6e-47, Sum P(2) = 8.6e-47
 Identities = 81/104 (77%), Positives = 91/104 (87%)

Query:    35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
             +R+KGPWS EED  L R+VE+YGPRNWS IS+ I GRSGKSCRLRWCNQLSP V HRPFS
Sbjct:     3 DRVKGPWSQEEDEQLRRMVEKYGPRNWSAISKSIPGRSGKSCRLRWCNQLSPEVEHRPFS 62

Query:    95 PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
             P ED+TI+ A A+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct:    63 PEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0048527 "lateral root development" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2115060 MYB73 "myb domain protein 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 459 (166.6 bits), Expect = 6.0e-46, Sum P(2) = 6.0e-46
 Identities = 84/115 (73%), Positives = 97/115 (84%)

Query:    24 NNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ 83
             +N TR+     ERIKGPWS EED +L RLV+++GPRNWSLIS+ I GRSGKSCRLRWCNQ
Sbjct:     2 SNPTRK---NMERIKGPWSPEEDDLLQRLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQ 58

Query:    84 LSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
             LSP V HR FS  ED+TI+ AHARFGN+WATI+RLL GRTDNA+KNHWNSTLKR+
Sbjct:    59 LSPEVEHRAFSQEEDETIIRAHARFGNKWATISRLLNGRTDNAIKNHWNSTLKRK 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2058613 MYB70 "myb domain protein 70" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 2.0e-45, Sum P(2) = 2.0e-45
 Identities = 82/110 (74%), Positives = 94/110 (85%)

Query:    30 ATHKP-ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
             +T K  +RIKGPWS EED +L  LV+++GPRNWSLIS+ I GRSGKSCRLRWCNQLSP V
Sbjct:     4 STRKEMDRIKGPWSPEEDDLLQSLVQKHGPRNWSLISKSIPGRSGKSCRLRWCNQLSPEV 63

Query:    89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
              HR F+  EDDTI+ AHARFGN+WATIARLL GRTDNA+KNHWNSTLKR+
Sbjct:    64 EHRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK 113

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0019722 "calcium-mediated signaling" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2158212 MYBR1 "AT5G67300" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.4e-44, Sum P(2) = 1.4e-44
 Identities = 81/104 (77%), Positives = 90/104 (86%)

Query:    35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
             +RIKGPWS EED  L RLV +YGPRNW++IS+ I GRSGKSCRLRWCNQLSP V HRPFS
Sbjct:     3 DRIKGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPGRSGKSCRLRWCNQLSPQVEHRPFS 62

Query:    95 PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
               ED+TI  AHA+FGN+WATIARLL GRTDNAVKNHWNSTLKR+
Sbjct:    63 AEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK 106

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;IMP

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IEP

GO:2000022 "regulation of jasmonic acid mediated signaling pathway" evidence=IMP

GO:2000031 "regulation of salicylic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2078961 MYB109 "myb domain protein 109" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 70/103 (67%), Positives = 85/103 (82%)

Query:    36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSP 95
             ++KGPWS EED +LT+LV + GPRNWSLI+R I GRSGKSCRLRWCNQL P +  +PFS 
Sbjct:    54 KVKGPWSTEEDAVLTKLVRKLGPRNWSLIARGIPGRSGKSCRLRWCNQLDPCLKRKPFSD 113

Query:    96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
              ED  I++AHA  GN+WA IA+LL GRTDNA+KNHWNSTL+R+
Sbjct:   114 EEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRK 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=IEP;RCA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP;RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0000303 "response to superoxide" evidence=RCA

GO:0009743 "response to carbohydrate stimulus" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

TAIR|locus:2083489 MYB1 "myb domain protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 69/104 (66%), Positives = 84/104 (80%)

Query:    35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
             +R+KGPWS EED +L+ LV+R G RNWS I+R I GRSGKSCRLRWCNQL+P++    F+
Sbjct:    52 DRVKGPWSKEEDDVLSELVKRLGARNWSFIARSIPGRSGKSCRLRWCNQLNPNLIRNSFT 111

Query:    95 PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
               ED  I+AAHA  GN+WA IA+LLPGRTDNA+KNHWNS L+RR
Sbjct:   112 EVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR 155

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

TAIR|locus:2061242 MYB25 "myb domain protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 67/106 (63%), Positives = 83/106 (78%)

Query:    36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSP 95
             ++KGPW  E+D  LTRLV+  GPRNW+LISR I GRSGKSCRLRWCNQL P +  +PFS 
Sbjct:    48 KVKGPWLPEQDEALTRLVKMCGPRNWNLISRGIPGRSGKSCRLRWCNQLDPILKRKPFSD 107

Query:    96 AEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
              E+  I++A A  GN+W+ IA+LLPGRTDNA+KNHWNS L+R+  E
Sbjct:   108 EEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRKPAE 153

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0010090 "trichome morphogenesis" evidence=RCA

UNIPROTKB|E9PIW4 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 61/108 (56%), Positives = 81/108 (75%)

Query:    34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
             PE IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct:    88 PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 147

Query:    94 SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
             +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+  +
Sbjct:   148 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PJ96 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 61/108 (56%), Positives = 81/108 (75%)

Query:    34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
             PE IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct:    88 PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 147

Query:    94 SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
             +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+  +
Sbjct:   148 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

UNIPROTKB|E9PKZ3 MYB "Transcriptional activator Myb" [Homo sapiens (taxid:9606)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 61/108 (56%), Positives = 81/108 (75%)

Query:    34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
             PE IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct:    88 PELIKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 147

Query:    94 SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
             +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+  +
Sbjct:   148 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKVEQ 195

GO:0003677 "DNA binding" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014754001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (216 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
PLN03212	249	PLN03212, PLN03212, Transcription repressor MYB5;	3e-26
PLN03091	459	PLN03091, PLN03091, hypothetical protein; Provisio	2e-25
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	3e-20
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	1e-17
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	3e-16
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	5e-15
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	1e-13
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	3e-13
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	8e-11
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	2e-10
pfam13921	59	pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding do	6e-07
COG5147	512	COG5147, REB1, Myb superfamily proteins, including	2e-05
cd11660	50	cd11660, SANT_TRF, Telomere repeat binding factor-	3e-05

>gnl|CDD|178751 PLN03212, PLN03212, Transcription repressor MYB5; Provisional

 Score =  102 bits (255), Expect = 3e-26
 Identities = 51/114 (44%), Positives = 68/114 (59%), Gaps = 1/114 (0%)

Query: 38  KGPWSAEEDRILTRLVERYGPRNW-SLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96
           +GPW+ EED IL   +++ G   W SL  R    R GKSCRLRW N L PSV     +  
Sbjct: 25  RGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSD 84

Query: 97  EDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQ 150
           E+D IL  H   GNRW+ IA  +PGRTDN +KN+WN+ L+++     +  Q H+
Sbjct: 85  EEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQGIDPQTHK 138

Length = 249

>gnl|CDD|215570 PLN03091, PLN03091, hypothetical protein; Provisional

 Score =  103 bits (258), Expect = 2e-25
 Identities = 58/129 (44%), Positives = 75/129 (58%), Gaps = 4/129 (3%)

Query: 38  KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQLSPSVAHRPFSPA 96
           KG WS EED  L R + +YG   WS + +     R GKSCRLRW N L P +    FS  
Sbjct: 14  KGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQ 73

Query: 97  EDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMD 156
           E++ I+  HA  GNRW+ IA  LPGRTDN +KN WNS LK++ R+  +    H+    + 
Sbjct: 74  EENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKP---LS 130

Query: 157 SVDNGGDNN 165
            V+NG D N
Sbjct: 131 EVENGEDKN 139

Length = 459

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 88.7 bits (220), Expect = 3e-20
 Identities = 34/113 (30%), Positives = 56/113 (49%)

Query: 35  ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
           +R  G W   ED  L  LV++ GP NWS ++  +   +GK    RW N L+P +  + +S
Sbjct: 17  KRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWS 76

Query: 95  PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQ 147
             ED+ ++      G +W+TIA     RT       + +TL+  +  H  ++Q
Sbjct: 77  EEEDEQLIDLDKELGTQWSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQ 129

Length = 512

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 73.7 bits (182), Expect = 1e-17
 Identities = 20/47 (42%), Positives = 32/47 (68%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL 84
          +GPW+ EED +L   V+++G  NWS I++++ GR+   C+ RW N L
Sbjct: 1  RGPWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 69.9 bits (172), Expect = 3e-16
 Identities = 23/49 (46%), Positives = 32/49 (65%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          KG W+ EED +L  LV++YG  NW  I++ + GR+ + CR RW N L P
Sbjct: 1  KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 66.8 bits (164), Expect = 5e-15
 Identities = 20/43 (46%), Positives = 28/43 (65%)

Query: 40 PWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN 82
          PW+ EED +L   V++YG  NW  I++ + GR+ K CR RW N
Sbjct: 1  PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRN 43

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 63.5 bits (155), Expect = 1e-13
 Identities = 23/59 (38%), Positives = 35/59 (59%), Gaps = 2/59 (3%)

Query: 41 WSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDD 99
          W+ EED  L +LVE+YG  +W  I+  + GR+  +CR RW  +L P  +  P++  ED 
Sbjct: 1  WTEEEDEKLLKLVEKYG-NDWKQIAEEL-GRTPSACRDRWRRKLRPKRSRGPWTKEEDQ 57

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 62.2 bits (152), Expect = 3e-13
 Identities = 22/45 (48%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 92  PFSPAEDDTILAAHARFGNR-WATIARLLPGRTDNAVKNHWNSTL 135
           P++P ED+ ++ A  + GN  W+ IA+ LPGRTDN  KN WN+ L
Sbjct: 3   PWTPEEDELLIEAVKKHGNGNWSKIAKHLPGRTDNQCKNRWNNYL 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 55.7 bits (135), Expect = 8e-11
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 91  RPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKR 137
             ++  ED+ ++    ++G N W  IA+ LPGRT    +  W + LK 
Sbjct: 2   GEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWRNLLKP 49

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 54.5 bits (132), Expect = 2e-10
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 1/45 (2%)

Query: 92  PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTL 135
           P++  ED+ +L A  ++G N W  IA+ LPGRT    +  W + L
Sbjct: 1   PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL 45

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|206092 pfam13921, Myb_DNA-bind_6, Myb-like DNA-binding domain

 Score = 45.0 bits (107), Expect = 6e-07
 Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)

Query: 93  FSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140
           ++  ED+ +L    ++GN W  IA  L GRT +A ++ W   L+ +  
Sbjct: 1   WTEEEDEKLLKLVEKYGNDWKQIAEEL-GRTPSACRDRWRRKLRPKRS 47

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 59

>gnl|CDD|227476 COG5147, REB1, Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 32/144 (22%), Positives = 48/144 (33%), Gaps = 3/144 (2%)

Query: 10  SSSESSSSESSLSGNNKTRRATH-KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI 68
            S  +S   SS    +  R   H  P+  K  WS EED  L  L +  G + WS I+ Y 
Sbjct: 43  WSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYK 101

Query: 69  KGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVK 128
             R+ + C  R+ N L    +         +        F    A    +          
Sbjct: 102 DRRTAQQCVERYVNTLEDLSSTHDSKLQRRNEFDKIDP-FNENSARRPDIYEDELLEREV 160

Query: 129 NHWNSTLKRRTREHPVQMQPHQQQ 152
           N   S   R  R     ++P ++ 
Sbjct: 161 NREASYRLRVPRVSKADVKPREKG 184

Length = 512

>gnl|CDD|212558 cd11660, SANT_TRF, Telomere repeat binding factor-like DNA-binding domains of the SANT/myb-like family

 Score = 40.2 bits (95), Expect = 3e-05
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 40 PWSAEEDRILTRLVERYGPRNWSLI---SRYIKGRSGKSCRLRWCN 82
           W+ EED  L   VE+YG  NW+ I     ++  R+    + +W N
Sbjct: 2  KWTDEEDEALVEGVEKYGVGNWAKILKDYFFVNNRTSVDLKDKWRN 47

Human telomere repeat binding factors, TRF1 and TRF2, function as part of the 6 component shelterin complex. TRF2 binds DNA and recruits RAP1 (via binding to the RAP1 protein c-terminal (RCT)) and TIN2 in the protection of telomeres from DNA repair machinery. Metazoan shelterin consists of 3 DNA binding proteins (TRF2, TRF1, and POT1) and 3 recruited proteins that bind to one or more of these DNA-binding proteins (RAP1, TIN2, TPP1). Schizosaccharomyces pombe TAZ1 is an orthlog and binds RAP1. Human TRF1 and TRF2 bind double-stranded DNA. hTRF2 consists of a basic N-terminus, a TRF homology domain, the RAP1 binding motif (RBM), the TIN2 binding motif (TBM) and a myb-like DNA binding domain, SANT, named after 'SWI3, ADA2, N-CoR and TFIIIB', several factors that share this domain. Tandem copies of the domain bind telomeric DNA tandem repeats as part of the capping complex. The single myb-like domain of TRF-type proteins is similar to the tandem myb_like domains found in yeast RAP1. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG0048	238	consensus Transcription factor, Myb superfamily [T	100.0
PLN03212	249	Transcription repressor MYB5; Provisional	100.0
PLN03091	459	hypothetical protein; Provisional	99.97
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.81
KOG0049	939	consensus Transcription factor, Myb superfamily [T	99.73
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.68
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	99.64
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.63
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	99.5
PLN03212	249	Transcription repressor MYB5; Provisional	99.5
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.47
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	99.44
PLN03091	459	hypothetical protein; Provisional	99.41
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.39
KOG0051	607	consensus RNA polymerase I termination factor, Myb	99.36
KOG0048	238	consensus Transcription factor, Myb superfamily [T	99.35
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.27
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	99.18
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.14
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	99.05
COG5147	512	REB1 Myb superfamily proteins, including transcrip	99.01
KOG0050	617	consensus mRNA splicing protein CDC5 (Myb superfam	97.97
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.88
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.87
KOG0457	438	consensus Histone acetyltransferase complex SAGA/A	97.74
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	97.72
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	97.54
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	97.49
PF13325	199	MCRS_N: N-terminal region of micro-spherule protei	97.34
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.31
KOG1279	506	consensus Chromatin remodeling factor subunit and	97.23
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	97.05
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	97.02
KOG1279	506	consensus Chromatin remodeling factor subunit and	96.98
PRK13923	170	putative spore coat protein regulator protein YlbO	96.67
PLN03142	1033	Probable chromatin-remodeling complex ATPase chain	96.51
PF13837	90	Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain;	96.29
PF08914	65	Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR0150	96.24
TIGR02894	161	DNA_bind_RsfA transcription factor, RsfA family. I	96.19
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.85
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.73
COG5114	432	Histone acetyltransferase complex SAGA/ADA, subuni	95.6
PF13873	78	Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain	95.46
PRK13923	170	putative spore coat protein regulator protein YlbO	94.7
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	93.24
KOG2656	445	consensus DNA methyltransferase 1-associated prote	92.95
PF12776	96	Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain;	92.89
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	91.85
KOG4282	345	consensus Transcription factor GT-2 and related pr	91.33
PF08281	54	Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013	90.59
COG5118	507	BDP1 Transcription initiation factor TFIIIB, Bdp1	90.3
KOG1194	534	consensus Predicted DNA-binding protein, contains	89.94
PF09111	118	SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain	88.02
PF11626	87	Rap1_C: TRF2-interacting telomeric protein/Rap1 -	86.79
KOG4167	907	consensus Predicted DNA-binding protein, contains	85.92
KOG4167	907	consensus Predicted DNA-binding protein, contains	84.5
KOG2656	445	consensus DNA methyltransferase 1-associated prote	84.17
KOG4282	345	consensus Transcription factor GT-2 and related pr	82.28

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=100.00  E-value=2.2e-34  Score=256.40  Aligned_cols=111  Identities=47%  Similarity=0.854  Sum_probs=106.1

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc-cCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNR  111 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~  111 (254)
                      ++.+.||+||+|||++|+++|++||.++|..|++.++ +|++++||.||.|||+|.++++.||+|||.+|+++|+.|||+
T Consensus         4 k~~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~fT~eEe~~Ii~lH~~~GNr   83 (238)
T KOG0048|consen    4 NPELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGNFSDEEEDLIIKLHALLGNR   83 (238)
T ss_pred             CccccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCCCCHHHHHHHHHHHHHHCcH
Confidence            3445689999999999999999999999999999998 999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHhhcccccCCC
Q 025351          112 WATIARLLPGRTDNAVKNHWNSTLKRRTREHP  143 (254)
Q Consensus       112 W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~  143 (254)
                      |+.||++|||||++.|||+|+..+|+++....
T Consensus        84 Ws~IA~~LPGRTDNeIKN~Wnt~lkkkl~~~~  115 (238)
T KOG0048|consen   84 WSLIAGRLPGRTDNEVKNHWNTHLKKKLLKMG  115 (238)
T ss_pred             HHHHHhhCCCcCHHHHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999987764

>PLN03212 Transcription repressor MYB5; Provisional

Probab=100.00  E-value=3.5e-33  Score=246.64  Aligned_cols=113  Identities=42%  Similarity=0.781  Sum_probs=107.1

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc-ccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcC
Q 025351           31 THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI-KGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFG  109 (254)
Q Consensus        31 ~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l-~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G  109 (254)
                      -.++.+++++||+|||++|+++|++||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++..||
T Consensus        18 c~K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgpWT~EED~lLlel~~~~G   97 (249)
T PLN03212         18 CTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLG   97 (249)
T ss_pred             cccCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCCCChHHHHHHHHHHHhcc
Confidence            34678889999999999999999999998999999998 69999999999999999999999999999999999999999


Q ss_pred             CChhhhhhcCCCCCHHHHHHHHHHhhcccccCCC
Q 025351          110 NRWATIARLLPGRTDNAVKNHWNSTLKRRTREHP  143 (254)
Q Consensus       110 ~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~  143 (254)
                      ++|+.||+.|+|||+++|||||+.+++++..+..
T Consensus        98 nKWs~IAk~LpGRTDnqIKNRWns~LrK~l~r~~  131 (249)
T PLN03212         98 NRWSLIAGRIPGRTDNEIKNYWNTHLRKKLLRQG  131 (249)
T ss_pred             ccHHHHHhhcCCCCHHHHHHHHHHHHhHHHHhcC
Confidence            9999999999999999999999999998876554

>PLN03091 hypothetical protein; Provisional

Probab=99.97  E-value=1.3e-31  Score=252.13  Aligned_cols=109  Identities=49%  Similarity=0.870  Sum_probs=103.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc-ccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI-KGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNR  111 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l-~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~  111 (254)
                      +..++||+||+|||++|+++|.+||..+|..||+.+ ++|+++|||+||.++|+|.+++++||+|||++|++++++||++
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgpWT~EED~lLLeL~k~~GnK   88 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQQEENLIIELHAVLGNR   88 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCCCCHHHHHHHHHHHHHhCcc
Confidence            457889999999999999999999999999999988 5999999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351          112 WATIARLLPGRTDNAVKNHWNSTLKRRTRE  141 (254)
Q Consensus       112 W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~  141 (254)
                      |++||+.|+|||+++||+||+.+++++.+.
T Consensus        89 WskIAk~LPGRTDnqIKNRWnslLKKklr~  118 (459)
T PLN03091         89 WSQIAAQLPGRTDNEIKNLWNSCLKKKLRQ  118 (459)
T ss_pred             hHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999987553

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.81  E-value=3.2e-20  Score=180.76  Aligned_cols=127  Identities=27%  Similarity=0.505  Sum_probs=114.6

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCC---CCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCC-C
Q 025351           36 RIKGPWSAEEDRILTRLVERYGP---RNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGN-R  111 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~---~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~-~  111 (254)
                      .....||+|||.+|+.||.....   .+|.+|-.+||||+..|...||...|+|.+++++||++||.+|+.+|.+||. .
T Consensus       303 L~ekeWsEEed~kL~alV~~~~~nShI~w~kVV~Ympgr~~~qLI~R~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kd  382 (939)
T KOG0049|consen  303 LSEKEWSEEEDTKLIALVKITSINSHIQWDKVVQYMPGRTRQQLITRFSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKD  382 (939)
T ss_pred             HHhhhcchhhhHHHHHHHHHhhccCccchHHHHHhcCCcchhhhhhhheeccCccccCCCCCCHHHHHHHHHHHHhCccc
Confidence            34577999999999999998754   4699999999999999999999999999999999999999999999999996 5


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCCC
Q 025351          112 WATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGDN  164 (254)
Q Consensus       112 W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~~  164 (254)
                      |.+|-..||||++.|||.||.+.|.+..+...|  .-.++.+|+.+|..+|..
T Consensus       383 w~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW--~l~edeqL~~~V~~YG~g  433 (939)
T KOG0049|consen  383 WAKVRQAVPNRSDSQCRERYTNVLNRSAKVERW--TLVEDEQLLYAVKVYGKG  433 (939)
T ss_pred             hhhHHHhcCCccHHHHHHHHHHHHHHhhccCce--eecchHHHHHHHHHHccc
Confidence            999999999999999999999999999888774  445667888888887753

>KOG0049 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.73  E-value=2e-18  Score=168.36  Aligned_cols=104  Identities=31%  Similarity=0.570  Sum_probs=97.1

Q ss_pred             ccccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHh
Q 025351           28 RRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHAR  107 (254)
Q Consensus        28 r~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~  107 (254)
                      ....++|.+++|+||++||.+|+.+|.+||.++|-+|-..+|+|+..|||+||.|.|+...+.+.||-.||+.|+.+|..
T Consensus       350 ~~~~LdPsikhg~wt~~ED~~L~~AV~~Yg~kdw~k~R~~vPnRSdsQcR~RY~nvL~~s~K~~rW~l~edeqL~~~V~~  429 (939)
T KOG0049|consen  350 FSHTLDPSVKHGRWTDQEDVLLVCAVSRYGAKDWAKVRQAVPNRSDSQCRERYTNVLNRSAKVERWTLVEDEQLLYAVKV  429 (939)
T ss_pred             heeccCccccCCCCCCHHHHHHHHHHHHhCccchhhHHHhcCCccHHHHHHHHHHHHHHhhccCceeecchHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cC-CChhhhhhcCCCCCHHH---HHHHH
Q 025351          108 FG-NRWATIARLLPGRTDNA---VKNHW  131 (254)
Q Consensus       108 ~G-~~W~~IA~~l~gRT~~q---~k~Rw  131 (254)
                      || .+|.+||..||.||..|   ||.|+
T Consensus       430 YG~g~WakcA~~Lp~~t~~q~~rrR~R~  457 (939)
T KOG0049|consen  430 YGKGNWAKCAMLLPKKTSRQLRRRRLRL  457 (939)
T ss_pred             HccchHHHHHHHccccchhHHHHHHHHH
Confidence            99 58999999999999954   44444

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.68  E-value=2.5e-17  Score=116.43  Aligned_cols=60  Identities=38%  Similarity=0.896  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHH
Q 025351           41 WSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTI  101 (254)
Q Consensus        41 WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~L  101 (254)
                      ||+|||++|+.+|.+|| .+|..||+.|+.|++.+|+.||.+.|.|.+.+++||++||++|
T Consensus         1 WT~eEd~~L~~~~~~~g-~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYG-NDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGPWTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHT-S-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSSSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHC-cCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCCcCHHHHhcC
Confidence            99999999999999999 5799999999779999999999999999999999999999987

...

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=6.6e-17  Score=154.57  Aligned_cols=105  Identities=28%  Similarity=0.569  Sum_probs=99.4

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhh
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATI  115 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~I  115 (254)
                      ++.|.|+.-||+.|...|.+||...|.+|++.++-.+++||+.||..+|+|.+++..|+.|||+.||.+...+..+|..|
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~tews~eederlLhlakl~p~qwrtI   84 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTEWSREEDERLLHLAKLEPTQWRTI   84 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhhhhhhHHHHHHHHHHhcCCccchH
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcCCCCCHHHHHHHHHHhhcccccC
Q 025351          116 ARLLPGRTDNAVKNHWNSTLKRRTRE  141 (254)
Q Consensus       116 A~~l~gRT~~q~k~Rw~~~lk~~~~~  141 (254)
                      +..| ||+.+||..||++++-.....
T Consensus        85 a~i~-gr~~~qc~eRy~~ll~~~~s~  109 (617)
T KOG0050|consen   85 ADIM-GRTSQQCLERYNNLLDVYVSY  109 (617)
T ss_pred             HHHh-hhhHHHHHHHHHHHHHHHHhh
Confidence            9999 999999999999988765443

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.63  E-value=1.7e-16  Score=153.96  Aligned_cols=109  Identities=29%  Similarity=0.599  Sum_probs=104.6

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCC
Q 025351           32 HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNR  111 (254)
Q Consensus        32 ~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~  111 (254)
                      +.-+++.|.|+..||+.|..+|+.||++||..||..+.-++++||+.||.++++|.+++..|+.|||..|+.+..++|.+
T Consensus        14 ~~~~~k~gsw~~~EDe~l~~~vk~l~~nnws~vas~~~~~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~   93 (512)
T COG5147          14 MQTKRKGGSWKRTEDEDLKALVKKLGPNNWSKVASLLISSTGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ   93 (512)
T ss_pred             ccceecCCCCCCcchhHHHHHHhhcccccHHHHHHHhcccccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch
Confidence            55677889999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             hhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351          112 WATIARLLPGRTDNAVKNHWNSTLKRRTR  140 (254)
Q Consensus       112 W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~  140 (254)
                      |+.||..++|||..+|.+||..++.....
T Consensus        94 wstia~~~d~rt~~~~~ery~~~~~~~~s  122 (512)
T COG5147          94 WSTIADYKDRRTAQQCVERYVNTLEDLSS  122 (512)
T ss_pred             hhhhccccCccchHHHHHHHHHHhhhhhc
Confidence            99999999999999999999999888766

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=99.50  E-value=4.5e-14  Score=99.70  Aligned_cols=60  Identities=28%  Similarity=0.612  Sum_probs=50.4

Q ss_pred             CChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHH
Q 025351           93 FSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQL  154 (254)
Q Consensus        93 WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L  154 (254)
                      ||+|||++|++++..||++|..||..|+.||+.+|++||+..|++...+.+  |+.++++.|
T Consensus         1 WT~eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~r~~~~l~~~~~~~~--wt~eEd~~L   60 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRNRWRNHLRPKISRGP--WTKEEDQRL   60 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHHHHHHTTSTTSTSSS--SSHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHHHHHHHCcccccCCC--cCHHHHhcC
Confidence            999999999999999999999999999559999999999998888776665  777776665

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=99.50  E-value=4e-14  Score=125.82  Aligned_cols=86  Identities=13%  Similarity=0.341  Sum_probs=73.5

Q ss_pred             cccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcC-CCCCHHHHHHHHHHhhcccccCCCCC
Q 025351           68 IKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLL-PGRTDNAVKNHWNSTLKRRTREHPVQ  145 (254)
Q Consensus        68 l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l-~gRT~~q~k~Rw~~~lk~~~~~~~~~  145 (254)
                      +++|+..-|.       ++.+++++||+|||++|+++|++|| ++|..||+.+ ++||+.||+.||.++|++.+++.+  
T Consensus        10 ~~~~~~pcc~-------K~glKRg~WT~EEDe~L~~lV~kyG~~nW~~IAk~~g~gRT~KQCReRW~N~L~P~I~kgp--   80 (249)
T PLN03212         10 VSKKTTPCCT-------KMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGG--   80 (249)
T ss_pred             CCCCCCCCcc-------cCCCcCCCCCHHHHHHHHHHHHHhCcccHHHHHHhhhcCCCcchHHHHHHHhhchhcccCC--
Confidence            4566665443       2578899999999999999999999 5799999988 599999999999999999998876  


Q ss_pred             CChhHHHHHHHHhhcCC
Q 025351          146 MQPHQQQQLMDSVDNGG  162 (254)
Q Consensus       146 ~~~~e~~~L~~~~~~~~  162 (254)
                      |+.+|+..|+..+...|
T Consensus        81 WT~EED~lLlel~~~~G   97 (249)
T PLN03212         81 ITSDEEDLILRLHRLLG   97 (249)
T ss_pred             CChHHHHHHHHHHHhcc
Confidence            77778888888887765

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.47  E-value=1.1e-14  Score=98.91  Aligned_cols=47  Identities=45%  Similarity=0.941  Sum_probs=42.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccc-cCChhhhhhhccccC
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQL   84 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-~Rs~~qcr~Rw~~~L   84 (254)
                      |++||+|||++|+++|.+||..+|..||..|+ +||..||+.||.++|
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999878999999999 999999999998865

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=99.44  E-value=1.2e-13  Score=93.76  Aligned_cols=46  Identities=30%  Similarity=0.743  Sum_probs=41.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCC-hhhhhhcCC-CCCHHHHHHHHHHhh
Q 025351           90 HRPFSPAEDDTILAAHARFGNR-WATIARLLP-GRTDNAVKNHWNSTL  135 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~~-W~~IA~~l~-gRT~~q~k~Rw~~~l  135 (254)
                      +++||+|||++|++++.+||.+ |..||..|+ |||..||++||++++
T Consensus         1 r~~Wt~eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~~~~~~~   48 (48)
T PF00249_consen    1 RGPWTEEEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRSRYQNLL   48 (48)
T ss_dssp             S-SS-HHHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHHHHHhhC
Confidence            5799999999999999999988 999999999 999999999998764

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>PLN03091 hypothetical protein; Provisional

Probab=99.41  E-value=3.9e-13  Score=127.61  Aligned_cols=76  Identities=14%  Similarity=0.394  Sum_probs=68.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCC-CCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCC
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFGN-RWATIARLLP-GRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGG  162 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~-gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~  162 (254)
                      ++.+++++||+|||++|+++|++||. +|..||+.+. ||++.|||.||.++|++.+++.+  |+.+|++.|++.+...|
T Consensus         9 KqklrKg~WTpEEDe~L~~~V~kyG~~nWs~IAk~~g~gRT~KQCRERW~NyLdP~IkKgp--WT~EED~lLLeL~k~~G   86 (459)
T PLN03091          9 KQKLRKGLWSPEEDEKLLRHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGT--FSQQEENLIIELHAVLG   86 (459)
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHhCcCCHHHHhhhhccCcCcchHhHHHHhccCCcccCCC--CCHHHHHHHHHHHHHhC
Confidence            46789999999999999999999995 7999999884 89999999999999999998875  88889999998887665

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.39  E-value=7.6e-13  Score=130.00  Aligned_cols=104  Identities=22%  Similarity=0.480  Sum_probs=92.9

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCC--CCCCCChHHHHHHHHHHH-------h
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV--AHRPFSPAEDDTILAAHA-------R  107 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~--~~~~WT~EED~~Ll~~v~-------~  107 (254)
                      .+|.||+||++.|..+|.++| .+|..|++.| +|.+..|++||.++..+.-  +++.||.||.++|+++|.       +
T Consensus       383 ~rg~wt~ee~eeL~~l~~~~g-~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~~~~~~~~q  460 (607)
T KOG0051|consen  383 KRGKWTPEEEEELKKLVVEHG-NDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVNEMIREALQ  460 (607)
T ss_pred             ccCCCCcchHHHHHHHHHHhc-ccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHHHHHHHhhc
Confidence            899999999999999999999 5799999999 6999999999999998874  889999999999999995       3


Q ss_pred             cC-------------------CChhhhhhcCCCCCHHHHHHHHHHhhcccccCC
Q 025351          108 FG-------------------NRWATIARLLPGRTDNAVKNHWNSTLKRRTREH  142 (254)
Q Consensus       108 ~G-------------------~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~  142 (254)
                      +.                   =+|..|+..+..|+..||+.+|+.++.+.....
T Consensus       461 ~q~~n~~~~~q~sp~s~~~d~I~Wt~vse~~~TR~~~qCr~Kw~kl~~~~s~n~  514 (607)
T KOG0051|consen  461 PQASNTDTGLQESPESTLKDDINWTLVSEMLGTRSRIQCRYKWYKLTTSPSFNK  514 (607)
T ss_pred             ccccccchhhhcCccccccCCcchhhhhHhhcCCCcchHHHHHHHHHhhHHhhc
Confidence            31                   159999998888999999999999988765444

>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription]

Probab=99.36  E-value=1.2e-12  Score=128.53  Aligned_cols=124  Identities=20%  Similarity=0.354  Sum_probs=107.4

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC----C-------------------CccccccccccCChhhhhhhccccCCCCC-CC
Q 025351           35 ERIKGPWSAEEDRILTRLVERYGP----R-------------------NWSLISRYIKGRSGKSCRLRWCNQLSPSV-AH   90 (254)
Q Consensus        35 ~~~kg~WT~eED~~L~~lV~~~g~----~-------------------nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~-~~   90 (254)
                      ..+-+.|+.+||.+|.+.|..|-.    .                   -|+.|...||.|+.+.++.+-++...|.- .+
T Consensus       305 e~~~~~F~~eed~ale~~V~~y~~~eg~s~~q~~~~i~s~~~~~~~~~l~n~~~~~Lp~R~~~siy~~~rR~y~~FE~~r  384 (607)
T KOG0051|consen  305 EINLKKFSKEEDAALENFVNEYLANEGWSSEQFCQRIWSKDWKTIIRNLYNNLYKLLPYRDRKSIYHHLRRAYTPFENKR  384 (607)
T ss_pred             hhhhhhccHHHHHHHHHHHHHHHHhhCcchhhhhhheeccCcchHHHHHHHhhhhhcCcccchhHHHHHHhcCCcccccc
Confidence            344588999999999999998711    1                   17889999999999999885555444444 99


Q ss_pred             CCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhh
Q 025351           91 RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVD  159 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~  159 (254)
                      |.||+||++.|..+|.++|+.|..|++.| ||.+.+|++||+++.+.........|+-++.+.|++.|+
T Consensus       385 g~wt~ee~eeL~~l~~~~g~~W~~Ig~~l-gr~P~~crd~wr~~~~~g~~~~r~~Ws~eEe~~Llk~V~  452 (607)
T KOG0051|consen  385 GKWTPEEEEELKKLVVEHGNDWKEIGKAL-GRMPMDCRDRWRQYVKCGSKRNRGAWSIEEEEKLLKTVN  452 (607)
T ss_pred             CCCCcchHHHHHHHHHHhcccHHHHHHHH-ccCcHHHHHHHHHhhccccccccCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999 999999999999999999867777799999999999996

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=99.35  E-value=1.4e-12  Score=116.38  Aligned_cols=75  Identities=15%  Similarity=0.311  Sum_probs=66.2

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCC-CCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351           87 SVAHRPFSPAEDDTILAAHARFGN-RWATIARLLP-GRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD  163 (254)
Q Consensus        87 ~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~-gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~  163 (254)
                      .+.+|+||+|||++|+++|+.||. +|..|++.++ +|+..+||-||.++|++.+++..  |+++|+..++++....|+
T Consensus         6 ~~~kGpWt~EED~~L~~~V~~~G~~~W~~i~k~~gl~R~GKSCRlRW~NyLrP~ikrg~--fT~eEe~~Ii~lH~~~GN   82 (238)
T KOG0048|consen    6 ELVKGPWTQEEDLTQIRSIKSFGKHNGTALPKLAGLRRCGKSCRLRWTNYLRPDLKRGN--FSDEEEDLIIKLHALLGN   82 (238)
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCCcchhhhhcCCCccchHHHHHhhcccCCCccCCC--CCHHHHHHHHHHHHHHCc
Confidence            345799999999999999999995 6999999998 99999999999999999999776  777788888887776553

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.27  E-value=7.9e-12  Score=82.70  Aligned_cols=47  Identities=34%  Similarity=0.775  Sum_probs=44.2

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351           90 HRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk  136 (254)
                      +++||++||.+|+.+++.|| .+|..||..|++||+.+|++||+.+++
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            36899999999999999999 999999999999999999999988765

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=99.18  E-value=1.5e-11  Score=81.33  Aligned_cols=48  Identities=46%  Similarity=1.001  Sum_probs=44.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCC
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      +++||++||++|..++..||..+|..||..|++|++.+|+.||.+++.
T Consensus         1 ~~~Wt~~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~~~~~~~   48 (49)
T smart00717        1 KGEWTEEEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRERWNNLLK   48 (49)
T ss_pred             CCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHHHHHHcC
Confidence            468999999999999999997789999999999999999999988654

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.14  E-value=7.7e-11  Score=76.79  Aligned_cols=44  Identities=39%  Similarity=0.874  Sum_probs=41.6

Q ss_pred             CCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhh
Q 025351           92 PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTL  135 (254)
Q Consensus        92 ~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~l  135 (254)
                      +||++||..|+.++..|| .+|..||..|++||..+|++||++++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999 89999999999999999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=99.05  E-value=1e-10  Score=76.22  Aligned_cols=45  Identities=47%  Similarity=1.007  Sum_probs=41.9

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccC
Q 025351           40 PWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL   84 (254)
Q Consensus        40 ~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L   84 (254)
                      +||++||++|+.++..||..+|..||..|++|+..+|+.||.+++
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~~~~~~~   45 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRERWRNLL   45 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHHHHHHhC
Confidence            599999999999999999778999999999999999999997653

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>COG5147 REB1 Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]

Probab=99.01  E-value=2.8e-10  Score=110.95  Aligned_cols=137  Identities=25%  Similarity=0.442  Sum_probs=112.1

Q ss_pred             CCCCCCcCcc-ccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccC--------------
Q 025351           20 SLSGNNKTRR-ATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL--------------   84 (254)
Q Consensus        20 s~s~~~k~r~-~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L--------------   84 (254)
                      +...+++.|| ...+|.++++.|+.+||+.|+.+-..+|.. |..||..+++|+..+|..||.+.+              
T Consensus        53 ~~~kq~~~rw~~~lnp~lk~~~~~~eed~~li~l~~~~~~~-wstia~~~d~rt~~~~~ery~~~~~~~~s~~~s~~~~~  131 (512)
T COG5147          53 STGKQSSNRWNNHLNPQLKKKNWSEEEDEQLIDLDKELGTQ-WSTIADYKDRRTAQQCVERYVNTLEDLSSTHDSKLQRR  131 (512)
T ss_pred             cccccccchhhhhhchhcccccccHHHHHHHHHHHHhcCch-hhhhccccCccchHHHHHHHHHHhhhhhccccccccch
Confidence            3455566666 678999999999999999999999999976 999999999999999999999554              


Q ss_pred             --------------------------------------------------------------------------------
Q 025351           85 --------------------------------------------------------------------------------   84 (254)
Q Consensus        85 --------------------------------------------------------------------------------   84 (254)
                                                                                                      
T Consensus       132 ~~f~k~d~f~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~rv~~~~vk~~~~~~~~~~~~~~~qem~~~~~~s~~~~~~~  211 (512)
T COG5147         132 NEFDKIDPFNENSARRPDIYEDELLEREVNREASYRLRVPRVSKADVKPREKGEENNPDIEDLQEMKELKSASITRHLIL  211 (512)
T ss_pred             hhccccCchhhhhhhhhhhhhcccchhhhhHHHHHHHHcccchHhhhhHHhhcccccccHHHHHHHhHHHHHHHHHHHhh
Confidence                                                                                            


Q ss_pred             --------------------------------------------------------------------------CCCCCC
Q 025351           85 --------------------------------------------------------------------------SPSVAH   90 (254)
Q Consensus        85 --------------------------------------------------------------------------~p~~~~   90 (254)
                                                                                                ++.-.+
T Consensus       212 ~~~~~~~k~f~~~~~~~~e~~i~~~~~~~~~sr~q~~~~Iws~~~~~~~f~~n~~~~l~~R~~ksiy~~~rrky~~f~~~  291 (512)
T COG5147         212 PSKSEINKAFKKGETLALEQEINEYKEKKGLSRKQFCERIWSTDRDEDKFWPNIYKKLPYRDKKSIYKHLRRKYNIFEQR  291 (512)
T ss_pred             hhhhhhccccchhHHHHHHHHHHHHHHHhcccHHHHHhhccccccccccccchhhcccccccccchHHHHHHhhhHHhhh
Confidence                                                                                      011122


Q ss_pred             CCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHh
Q 025351           91 RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSV  158 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~  158 (254)
                      +.||.+|+..|...+.++|..|..|.+.+ +|-++.|++||..+.+.....+...|..++...|...+
T Consensus       292 ~~wt~e~~~eL~~~~~~~~~~w~~ig~~~-~rmp~~crd~wr~~~~~g~t~~~~~ws~eee~~l~~vv  358 (512)
T COG5147         292 GKWTKEEEQELAKLVVEHGGSWTEIGKLL-GRMPNDCRDRWRDYVKCGDTLKRNRWSIEEEELLDKVV  358 (512)
T ss_pred             ccCccccccccccccccccchhhHhhhhh-ccCcHHHHHHHhhhccccCccCCCCCchhhhhhHHHHH
Confidence            57999999999999999999999999999 99999999999999999644444445555544444433

>KOG0050 consensus mRNA splicing protein CDC5 (Myb superfamily) [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]

Probab=97.97  E-value=5.6e-06  Score=80.42  Aligned_cols=71  Identities=23%  Similarity=0.449  Sum_probs=61.8

Q ss_pred             CCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhc
Q 025351           88 VAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDN  160 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~  160 (254)
                      ++-+-|+.-||+.|-.++..|| |+|+.|+..++-.|+.||++||...+.+.+++..  |+-+++.+|+.++-.
T Consensus         5 ~kggvwrntEdeilkaav~kyg~nqws~i~sll~~kt~rqC~~rw~e~ldp~i~~te--ws~eederlLhlakl   76 (617)
T KOG0050|consen    5 IKGGVWRNTEDEVLKAAVMKYGKNQWSRIASLLNRKTARQCKARWEEWLDPAIKKTE--WSREEDERLLHLAKL   76 (617)
T ss_pred             EecceecccHHHHHHHHHHHcchHHHHHHHHHHhhcchhHHHHHHHHHhCHHHhhhh--hhhhHHHHHHHHHHh
Confidence            4567899999999999999999 5799999999999999999999999999998876  556667777776554

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.88  E-value=3.3e-05  Score=54.51  Aligned_cols=47  Identities=21%  Similarity=0.345  Sum_probs=41.4

Q ss_pred             CCCCChHHHHHHHHHHHhcCC-Ch---hhhhhcCC-CC-CHHHHHHHHHHhhc
Q 025351           90 HRPFSPAEDDTILAAHARFGN-RW---ATIARLLP-GR-TDNAVKNHWNSTLK  136 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~-~W---~~IA~~l~-gR-T~~q~k~Rw~~~lk  136 (254)
                      +-.||+||...+++++..||. +|   ..|+..|. .| |..||+.|++.+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            458999999999999999996 99   99999885 35 99999999987654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.87  E-value=1.4e-05  Score=76.30  Aligned_cols=58  Identities=21%  Similarity=0.452  Sum_probs=49.6

Q ss_pred             CccccCCC---CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccC
Q 025351           27 TRRATHKP---ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL   84 (254)
Q Consensus        27 ~r~~~~~p---~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L   84 (254)
                      ..++.+.+   .+-...||.+|+-+|+++++.||.+||..||.+|+.|+..+|+.+|.+.+
T Consensus        58 H~Yrim~~~s~~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~f  118 (438)
T KOG0457|consen   58 HPYRIMDTNSFPILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHF  118 (438)
T ss_pred             CCceeecCCCCCCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHH
Confidence            34444444   34557799999999999999999999999999999999999999999854

>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=97.74  E-value=4.3e-05  Score=73.01  Aligned_cols=52  Identities=19%  Similarity=0.420  Sum_probs=46.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351           87 SVAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        87 ~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      .+-...||.+|+.+||+++..|| ++|..||.++..||..+|+.+|.+++-..
T Consensus        69 ~i~~~~WtadEEilLLea~~t~G~GNW~dIA~hIGtKtkeeck~hy~k~fv~s  121 (438)
T KOG0457|consen   69 PILDPSWTADEEILLLEAAETYGFGNWQDIADHIGTKTKEECKEHYLKHFVNS  121 (438)
T ss_pred             CCCCCCCChHHHHHHHHHHHHhCCCcHHHHHHHHcccchHHHHHHHHHHHhcC
Confidence            34456899999999999999999 89999999998899999999998776554

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=97.72  E-value=3e-05  Score=54.78  Aligned_cols=47  Identities=11%  Similarity=0.237  Sum_probs=41.2

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCc---cccccccc-cC-ChhhhhhhccccC
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNW---SLISRYIK-GR-SGKSCRLRWCNQL   84 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW---~~Ia~~l~-~R-s~~qcr~Rw~~~L   84 (254)
                      +-.||+||..+++.+|+.+|..+|   ..|++.|. .+ |..||+.|++.+.
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~   54 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVVDGLTRDQVASHLQKYR   54 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            456999999999999999998799   99999884 56 9999999988764

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=97.54  E-value=0.0001  Score=53.42  Aligned_cols=51  Identities=24%  Similarity=0.486  Sum_probs=33.2

Q ss_pred             CCCCChHHHHHHHHHHHhc--------CCC-hhhhhhcCC-CCCHHHHHHHHHHhhccccc
Q 025351           90 HRPFSPAEDDTILAAHARF--------GNR-WATIARLLP-GRTDNAVKNHWNSTLKRRTR  140 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~--------G~~-W~~IA~~l~-gRT~~q~k~Rw~~~lk~~~~  140 (254)
                      +.+||.+||+.|++.|+++        ||+ |.+++..-+ .+|-...|+||...|+.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~~   62 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRPR   62 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT-----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcccc
Confidence            4589999999999999764        222 999999877 89999999999988887653

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=97.49  E-value=7.4e-05  Score=62.97  Aligned_cols=53  Identities=23%  Similarity=0.419  Sum_probs=45.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhc---CC----ChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351           88 VAHRPFSPAEDDTILAAHARF---GN----RWATIARLLPGRTDNAVKNHWNSTLKRRTRE  141 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~---G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~  141 (254)
                      .+...||.|||.+|.+.|.+|   |.    -+..++..| +||+.+|.-|||.++++++..
T Consensus         2 ~RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VRkqY~~   61 (161)
T TIGR02894         2 TRQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVRKQYEE   61 (161)
T ss_pred             ccccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHHHHHHH
Confidence            356789999999999999887   43    388889999 999999999999999998753

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>PF13325 MCRS_N: N-terminal region of micro-spherule protein

Probab=97.34  E-value=0.00049  Score=60.19  Aligned_cols=96  Identities=19%  Similarity=0.339  Sum_probs=71.6

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCcccccccc---ccCChhhhhhhccccCC----------------CC-----CCCCCCCh
Q 025351           40 PWSAEEDRILTRLVERYGPRNWSLISRYI---KGRSGKSCRLRWCNQLS----------------PS-----VAHRPFSP   95 (254)
Q Consensus        40 ~WT~eED~~L~~lV~~~g~~nW~~Ia~~l---~~Rs~~qcr~Rw~~~L~----------------p~-----~~~~~WT~   95 (254)
                      +|++++|-+|+.+|..-.  +-..|+..+   ..-|...+..||+..|.                |.     ..+.+||.
T Consensus         1 rW~~~DDl~Li~av~~~~--~L~~v~~gvkFS~~fT~~Ei~~RW~~llyd~~is~~a~~~m~~l~p~~~~~iq~kalfS~   78 (199)
T PF13325_consen    1 RWKPEDDLLLINAVEQTN--DLESVHLGVKFSCKFTLQEIEERWYALLYDPVISRIAVAAMRNLHPELIAAIQSKALFSK   78 (199)
T ss_pred             CCCchhhHHHHHHHHHhc--CHHHHHccCCcCCcCcHHHHHHHHHHHHcChhhHHHHHHHHHhCCcchhhcccccCCCCH
Confidence            599999999999999865  467777665   34577888899998762                22     24568999


Q ss_pred             HHHHHHHHHHHhcCC---Chhhhhh-----cCCCCCHHHHHHHHHHhhcc
Q 025351           96 AEDDTILAAHARFGN---RWATIAR-----LLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        96 EED~~Ll~~v~~~G~---~W~~IA~-----~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      +|+++|.........   .+.+|=.     .-++||+.++.++|..+.+.
T Consensus        79 ~EE~lL~~v~s~~~p~le~Fq~LL~~n~~vFh~sRTak~L~~HW~lmkqy  128 (199)
T PF13325_consen   79 EEEQLLGTVASSSQPSLETFQELLDKNRSVFHPSRTAKSLQDHWRLMKQY  128 (199)
T ss_pred             HHHHHHHhhhhccCCcHHHHHHHHHhChhhhccccCHHHHHHHHHHHHHh
Confidence            999999998766654   3666633     23689999999999744433

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.31  E-value=0.00012  Score=70.68  Aligned_cols=46  Identities=24%  Similarity=0.533  Sum_probs=42.5

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      ....||.+|..+|++.|+.|| .+|.+||.++.+|+..||..||.++
T Consensus       278 ~dk~WS~qE~~LLLEGIe~yg-DdW~kVA~HVgtKt~EqCIl~FL~L  323 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYG-DDWDKVARHVGTKTKEQCILHFLQL  323 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhh-hhHHHHHHHhCCCCHHHHHHHHHcC
Confidence            556899999999999999999 4799999999999999999999864

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=97.23  E-value=0.0002  Score=70.53  Aligned_cols=48  Identities=23%  Similarity=0.591  Sum_probs=43.5

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351           35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        35 ~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      ...++.||.+|+-+|++.|+.|| .+|.+||.++.+||..||..|+.+.
T Consensus       250 ~~~~~~WT~qE~lLLLE~ie~y~-ddW~kVa~hVg~ks~eqCI~kFL~L  297 (506)
T KOG1279|consen  250 ESARPNWTEQETLLLLEAIEMYG-DDWNKVADHVGTKSQEQCILKFLRL  297 (506)
T ss_pred             ccCCCCccHHHHHHHHHHHHHhc-ccHHHHHhccCCCCHHHHHHHHHhc
Confidence            34567899999999999999999 5799999999999999999999863

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=97.05  E-value=0.00051  Score=66.37  Aligned_cols=44  Identities=20%  Similarity=0.357  Sum_probs=41.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHH
Q 025351           89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWN  132 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~  132 (254)
                      ....||.+|..+|+++|..||..|.+||+++..||..||--||-
T Consensus       278 ~dk~WS~qE~~LLLEGIe~ygDdW~kVA~HVgtKt~EqCIl~FL  321 (531)
T COG5259         278 RDKNWSRQELLLLLEGIEMYGDDWDKVARHVGTKTKEQCILHFL  321 (531)
T ss_pred             ccccccHHHHHHHHHHHHHhhhhHHHHHHHhCCCCHHHHHHHHH
Confidence            34489999999999999999999999999999999999999994

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=97.02  E-value=0.00035  Score=52.35  Aligned_cols=48  Identities=25%  Similarity=0.504  Sum_probs=33.6

Q ss_pred             CCCCChHHHHHHHHHHHh------cC--C------ChhhhhhcC----CCCCHHHHHHHHHHhhcc
Q 025351           90 HRPFSPAEDDTILAAHAR------FG--N------RWATIARLL----PGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~------~G--~------~W~~IA~~l----~gRT~~q~k~Rw~~~lk~  137 (254)
                      +..||.+|...||+++.+      ++  .      -|..||..|    ..||+.||+++|+++.+.
T Consensus         1 R~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L~~~   66 (90)
T PF13837_consen    1 RRNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNLKKK   66 (90)
T ss_dssp             --SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            357999999999999877      22  1      399999976    359999999999775554

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=96.98  E-value=0.00086  Score=66.06  Aligned_cols=44  Identities=16%  Similarity=0.313  Sum_probs=41.4

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHH
Q 025351           89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWN  132 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~  132 (254)
                      ....||.+|..+||+++..||-+|.+||.++.+||..||-.||.
T Consensus       252 ~~~~WT~qE~lLLLE~ie~y~ddW~kVa~hVg~ks~eqCI~kFL  295 (506)
T KOG1279|consen  252 ARPNWTEQETLLLLEAIEMYGDDWNKVADHVGTKSQEQCILKFL  295 (506)
T ss_pred             CCCCccHHHHHHHHHHHHHhcccHHHHHhccCCCCHHHHHHHHH
Confidence            45689999999999999999999999999999999999999994

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=96.67  E-value=0.0011  Score=56.56  Aligned_cols=52  Identities=17%  Similarity=0.329  Sum_probs=43.9

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCC-------hhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351           88 VAHRPFSPAEDDTILAAHARFGNR-------WATIARLLPGRTDNAVKNHWNSTLKRRTR  140 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~~-------W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~  140 (254)
                      .++..||.|||.+|.+.+..|+..       ...++..| +||..+|..|||.++++++.
T Consensus         3 ~rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vrk~Ye   61 (170)
T PRK13923          3 TRQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVRKQYQ   61 (170)
T ss_pred             chhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHHHHHH
Confidence            456799999999999988888642       56667788 99999999999999998874

>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional

Probab=96.51  E-value=0.0051  Score=65.49  Aligned_cols=102  Identities=14%  Similarity=0.334  Sum_probs=78.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhh-------cccc------C---------------------
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLR-------WCNQ------L---------------------   84 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~R-------w~~~------L---------------------   84 (254)
                      +.||.-+=..++.+..+||..+...||..|.+++...++..       |..+      +                     
T Consensus       825 ~~w~~~~f~~f~~~~~~~gr~~~~~i~~~~~~k~~~ev~~y~~~f~~~~~~~~~~~~~~~~ie~~e~~~~~~~~~~~~~~  904 (1033)
T PLN03142        825 STWSRRDFNAFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFWERYKELNDYDRIIKNIERGEARISRKDEIMKAIG  904 (1033)
T ss_pred             CcccHHHHHHHHHHHHHhCHhHHHHHHHHhcCCCHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35888888888888899998889999999988887666531       1110      0                     


Q ss_pred             ----------------CCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhh------------cCCCCCHHHHHHHHHHhh
Q 025351           85 ----------------SPSVAHRPFSPAEDDTILAAHARFG-NRWATIAR------------LLPGRTDNAVKNHWNSTL  135 (254)
Q Consensus        85 ----------------~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~------------~l~gRT~~q~k~Rw~~~l  135 (254)
                                      .+..+...||.|||..||-++.+|| .+|..|-.            .|..||+..|..|.+.++
T Consensus       905 ~k~~~~~~p~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~g~~~~~~~~~~i~~~~~f~fd~~~~srt~~~~~~r~~~l~  984 (1033)
T PLN03142        905 KKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMLCMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTPQELARRCDTLI  984 (1033)
T ss_pred             HHHHHccCcHHHceeecCCCCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHhCCceeeehhhccCCHHHHHHHHHHHH
Confidence                            1334455799999999999999999 57999833            236899999999998888


Q ss_pred             ccccc
Q 025351          136 KRRTR  140 (254)
Q Consensus       136 k~~~~  140 (254)
                      +-..+
T Consensus       985 ~~~~~  989 (1033)
T PLN03142        985 RLIEK  989 (1033)
T ss_pred             HHHHH
Confidence            77543

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A

Probab=96.29  E-value=0.0017  Score=48.49  Aligned_cols=45  Identities=27%  Similarity=0.613  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHHHHHH--h----C--CC-----Ccccccccc----ccCChhhhhhhcccc
Q 025351           39 GPWSAEEDRILTRLVER--Y----G--PR-----NWSLISRYI----KGRSGKSCRLRWCNQ   83 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~--~----g--~~-----nW~~Ia~~l----~~Rs~~qcr~Rw~~~   83 (254)
                      -.||.+|...|+.++..  +    +  ..     -|..||..|    ..||+.||+.||.+.
T Consensus         2 ~~Wt~~et~~Li~~~~~~~~~~~~~~~~~~~~~~~w~~Ia~~l~~~G~~rt~~qc~~Kw~~L   63 (90)
T PF13837_consen    2 RNWTDEETKLLIELWKENLMELRFDNGGKKRNKKVWKEIAEELAEHGYNRTPEQCRNKWKNL   63 (90)
T ss_dssp             -SS-HHHHHHHHHHHHH--HHHHHHH--SS--HHHHHHHHHHHHHHC----HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            46999999999999988  2    1  11     299999988    369999999999874

>PF08914 Myb_DNA-bind_2: Rap1 Myb domain; InterPro: IPR015010 Rap1 Myb adopts a canonical three-helix bundle tertiary structure, with the second and third helices forming a helix-turn-helix variant motif

Probab=96.24  E-value=0.0022  Score=46.48  Aligned_cols=51  Identities=22%  Similarity=0.335  Sum_probs=32.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------CC--ccccccccc-cCChhhhhhhccccCCCCC
Q 025351           38 KGPWSAEEDRILTRLVERYGP------RN--WSLISRYIK-GRSGKSCRLRWCNQLSPSV   88 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~------~n--W~~Ia~~l~-~Rs~~qcr~Rw~~~L~p~~   88 (254)
                      +.+||.+||++|+..|..+..      +|  |..+++.-+ .+|..+-++||.+.|.+..
T Consensus         2 R~~fT~edD~~l~~~v~~~~~~~~~~~Gn~iwk~le~~~~t~HtwQSwR~Ry~K~L~~~~   61 (65)
T PF08914_consen    2 RTPFTEEDDAALLDYVKENERQGGSVSGNKIWKELEEKHPTRHTWQSWRDRYLKHLRGRP   61 (65)
T ss_dssp             -----HHHHHHHHHHHHHT--STTTTTSSHHHHHHHHS-SSS--SHHHHHHHHHHT----
T ss_pred             CCCCCHHHHHHHHHHHHHhccCCCCCchHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccc
Confidence            467999999999999976531      12  999998877 8889999999999887654

The function is unclear but it may either interact with DNA via an adaptor protein or it may be only involved in protein-protein interactions []. ; PDB: 1FEX_A.

>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family

Probab=96.19  E-value=0.0018  Score=54.66  Aligned_cols=48  Identities=27%  Similarity=0.605  Sum_probs=40.0

Q ss_pred             CcCCCCHHHHHHHHHHHHHh---CCC---CccccccccccCChhhhhhhccccCC
Q 025351           37 IKGPWSAEEDRILTRLVERY---GPR---NWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~---g~~---nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      +...||.|||.+|...|-+|   |..   -+..|+..| +||+..|.-||+.++.
T Consensus         3 RQDAWT~eeDlLLAEtVLrhIReG~TQL~AFeEvg~~L-~RTsAACGFRWNs~VR   56 (161)
T TIGR02894         3 RQDAWTHEEDLLLAETVLRHIREGSTQLSAFEEVGRAL-NRTAAACGFRWNAYVR   56 (161)
T ss_pred             cccccccHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH-cccHHHhcchHHHHHH
Confidence            45679999999999999999   221   278888888 6999999999998874

In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.85  E-value=0.0082  Score=55.87  Aligned_cols=47  Identities=17%  Similarity=0.427  Sum_probs=42.8

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351           90 HRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk  136 (254)
                      -..|+.+|+.+|+++...+| ++|..||.++..|+...||.||..+..
T Consensus        63 ~e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          63 EEGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34799999999999999999 799999999978999999999977655

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.73  E-value=0.0074  Score=44.29  Aligned_cols=47  Identities=34%  Similarity=0.465  Sum_probs=38.4

Q ss_pred             cCCCCHHHHHHHHHHHHHh-----CCC-----------Ccccccccc-----ccCChhhhhhhccccC
Q 025351           38 KGPWSAEEDRILTRLVERY-----GPR-----------NWSLISRYI-----KGRSGKSCRLRWCNQL   84 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~-----g~~-----------nW~~Ia~~l-----~~Rs~~qcr~Rw~~~L   84 (254)
                      +..||++|.+.|+.+|.+|     +..           -|..|+..|     +.|+..||+.+|.++.
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk   69 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLK   69 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHH
Confidence            4579999999999999998     211           299999887     3699999999998753

>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]

Probab=95.60  E-value=0.004  Score=57.93  Aligned_cols=47  Identities=23%  Similarity=0.521  Sum_probs=43.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCC
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      -.|+..|+-+|++..+..|.+||..||.+++.|+...|+.+|.+.+.
T Consensus        64 e~WgadEEllli~~~~TlGlGNW~dIadyiGsr~kee~k~HylK~y~  110 (432)
T COG5114          64 EGWGADEELLLIECLDTLGLGNWEDIADYIGSRAKEEIKSHYLKMYD  110 (432)
T ss_pred             CCcCchHHHHHHHHHHhcCCCcHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            34999999999999999999999999999999999999999998664

>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain

Probab=95.46  E-value=0.018  Score=42.19  Aligned_cols=48  Identities=23%  Similarity=0.488  Sum_probs=38.9

Q ss_pred             CCCCChHHHHHHHHHHHhc-----CC------------ChhhhhhcC----C-CCCHHHHHHHHHHhhcc
Q 025351           90 HRPFSPAEDDTILAAHARF-----GN------------RWATIARLL----P-GRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~-----G~------------~W~~IA~~l----~-gRT~~q~k~Rw~~~lk~  137 (254)
                      ...||++|...|++++.+|     |.            -|..|+..|    + .||..+|+.+|.++...
T Consensus         2 ~~~fs~~E~~~Lv~~v~~~~~il~~k~~~~~~~~~k~~~W~~I~~~lN~~~~~~Rs~~~lkkkW~nlk~~   71 (78)
T PF13873_consen    2 KPNFSEEEKEILVELVEKHKDILENKFSDSVSNKEKRKAWEEIAEELNALGPGKRSWKQLKKKWKNLKSK   71 (78)
T ss_pred             CCCCCHHHHHHHHHHHHHhHHHHhcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHH
Confidence            3579999999999999876     31            399999865    2 49999999999877654

>PRK13923 putative spore coat protein regulator protein YlbO; Provisional

Probab=94.70  E-value=0.011  Score=50.51  Aligned_cols=48  Identities=21%  Similarity=0.504  Sum_probs=37.7

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCC------ccccccccccCChhhhhhhccccCC
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRN------WSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~n------W~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      +...||.|||.+|...|-.|+...      ...++..| +|++.+|..||+.++.
T Consensus         4 rqdawt~e~d~llae~vl~~i~eg~tql~afe~~g~~L-~rt~aac~fRwNs~vr   57 (170)
T PRK13923          4 RQDAWTQERDGLLAEVVLRHIREGGTQLKAFEEVGDAL-KRTAAACGFRWNSVVR   57 (170)
T ss_pred             hhhhhhhHHHHHHHHHHHHHHhccchHHHHHHHHHHHH-hhhHHHHHhHHHHHHH
Confidence            457899999999999999996543      44555555 6999999999966554

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=93.24  E-value=0.11  Score=41.99  Aligned_cols=52  Identities=21%  Similarity=0.432  Sum_probs=40.8

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCC----Chhhhhh------------cCCCCCHHHHHHHHHHhhccc
Q 025351           87 SVAHRPFSPAEDDTILAAHARFGN----RWATIAR------------LLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        87 ~~~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~------------~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      ...+..||++||.-||-++.+||-    .|..|-.            .|..||+..|..|-+.+++-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i  113 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCNTLIKLI  113 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHHHHHHHH
Confidence            566779999999999999999997    6988854            236899999999998877654

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=92.95  E-value=0.12  Score=49.48  Aligned_cols=80  Identities=19%  Similarity=0.293  Sum_probs=59.1

Q ss_pred             CccccccccccCChhhhhhhccccCCC-------------------------CCCCCCCChHHHHHHHHHHHhcCCChhh
Q 025351           60 NWSLISRYIKGRSGKSCRLRWCNQLSP-------------------------SVAHRPFSPAEDDTILAAHARFGNRWAT  114 (254)
Q Consensus        60 nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p-------------------------~~~~~~WT~EED~~Ll~~v~~~G~~W~~  114 (254)
                      +|..+.-..+-|...-...||....++                         .++-..||.+|-+-|+++++.|.-+|.-
T Consensus        75 ~W~w~pFtn~aRkD~~~l~HWvr~~d~~~dypfakfNk~vdipsYt~eEYe~~l~dn~WskeETD~LF~lck~fDLRf~V  154 (445)
T KOG2656|consen   75 PWKWVPFTNSARKDDATLHHWVRVGDTPKDYPFAKFNKHVDIPSYTDEEYEAHLNDNSWSKEETDYLFDLCKRFDLRFFV  154 (445)
T ss_pred             CceeeccCCccccCCceEEeeeeccCCCCCCchhhhccccCccccchHHHHHhhccccccHHHHHHHHHHHHhcCeeEEE
Confidence            466666666666665556666554221                         1223469999999999999999999999


Q ss_pred             hhhc-----CCC-CCHHHHHHHHHHhhcccc
Q 025351          115 IARL-----LPG-RTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus       115 IA~~-----l~g-RT~~q~k~Rw~~~lk~~~  139 (254)
                      ||..     ++. ||-.++|+||..+.+.-.
T Consensus       155 IaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~  185 (445)
T KOG2656|consen  155 IADRYDNQQYKKSRTVEDLKERYYSVCRKLL  185 (445)
T ss_pred             EeeccchhhccccccHHHHHHHHHHHHHHHH
Confidence            9986     655 999999999987766543

>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains

Probab=92.89  E-value=0.13  Score=38.75  Aligned_cols=47  Identities=32%  Similarity=0.577  Sum_probs=35.2

Q ss_pred             CCChHHHHHHHHHHHhc---CC----------ChhhhhhcC---CC--CCHHHHHHHHHHhhcccc
Q 025351           92 PFSPAEDDTILAAHARF---GN----------RWATIARLL---PG--RTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus        92 ~WT~EED~~Ll~~v~~~---G~----------~W~~IA~~l---~g--RT~~q~k~Rw~~~lk~~~  139 (254)
                      .||++++..||+++.+.   |+          .|..|+..|   .|  .|..||++|| ..||+.+
T Consensus         1 ~Wt~~~~~~ll~~~~e~~~~g~~~~~~~fk~~~w~~i~~~~~~~~~~~~t~~qlknk~-~~lk~~y   65 (96)
T PF12776_consen    1 SWTPEMTRFLLDLLIEQINKGNRPTNGGFKKEGWNNIAEEFNEKTGLNYTKKQLKNKW-KTLKKDY   65 (96)
T ss_pred             CCChHHHHHHHHHHHHHHHhCCCCCCCCcCHHHHHHHHHHHHHHhCCcccHHHHHHHH-HHHHHHH
Confidence            49999999999998653   21          299998876   23  5789999999 5555544

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=91.85  E-value=0.1  Score=49.70  Aligned_cols=43  Identities=23%  Similarity=0.424  Sum_probs=40.2

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccc
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN   82 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~   82 (254)
                      -+||.+|-+++.+++..+|+ +++.|+..+|+|..+|++.+|.+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGt-dF~LIs~lfP~R~RkqIKaKfi~  408 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGT-DFSLISSLFPNRERKQIKAKFIK  408 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcc-hHHHHHHhcCchhHHHHHHHHHH
Confidence            47999999999999999995 69999999999999999999865

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=91.33  E-value=0.24  Score=46.35  Aligned_cols=49  Identities=20%  Similarity=0.328  Sum_probs=39.6

Q ss_pred             CCCCChHHHHHHHHHHHhc----------CCChhhhhhcC----CCCCHHHHHHHHHHhhccc
Q 025351           90 HRPFSPAEDDTILAAHARF----------GNRWATIARLL----PGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~----------G~~W~~IA~~l----~gRT~~q~k~Rw~~~lk~~  138 (254)
                      ...|+.+|-..||++..+.          +.-|..||+.+    .-||+.+|+++|.++.++-
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~k~Y  116 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLKKKY  116 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHH
Confidence            4689999999999998643          23499999954    2499999999998887764

>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription

Probab=90.59  E-value=0.48  Score=31.93  Aligned_cols=41  Identities=27%  Similarity=0.386  Sum_probs=31.8

Q ss_pred             hHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351           95 PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        95 ~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk  136 (254)
                      ++++..++.++...|-.|.+||..+ |.|...|+.+....++
T Consensus        12 ~~~~r~i~~l~~~~g~s~~eIa~~l-~~s~~~v~~~l~ra~~   52 (54)
T PF08281_consen   12 PERQREIFLLRYFQGMSYAEIAEIL-GISESTVKRRLRRARK   52 (54)
T ss_dssp             -HHHHHHHHHHHTS---HHHHHHHC-TS-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHH-CcCHHHHHHHHHHHHh
Confidence            5678889999999999999999999 9999999999876654

Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.

>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]

Probab=90.30  E-value=0.38  Score=46.00  Aligned_cols=47  Identities=21%  Similarity=0.338  Sum_probs=43.3

Q ss_pred             CCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           91 RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      .+||.+|-++..+|....|-.++.|+.+||.|...|||-+|.+--|+
T Consensus       366 ~~Ws~~e~ekFYKALs~wGtdF~LIs~lfP~R~RkqIKaKfi~Eek~  412 (507)
T COG5118         366 LRWSKKEIEKFYKALSIWGTDFSLISSLFPNRERKQIKAKFIKEEKV  412 (507)
T ss_pred             CcccHHHHHHHHHHHHHhcchHHHHHHhcCchhHHHHHHHHHHHhhh
Confidence            48999999999999999999999999999999999999999765554

>KOG1194 consensus Predicted DNA-binding protein, contains Myb-like, SANT and ELM2 domains [Transcription]

Probab=89.94  E-value=0.45  Score=46.42  Aligned_cols=51  Identities=20%  Similarity=0.212  Sum_probs=45.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351           89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~  139 (254)
                      .+..||.||-.++-+++..||.++.+|-..||.|+-..|...|...-|.+.
T Consensus       186 ~~d~WT~Ed~vlFe~aF~~~GK~F~kIrq~LP~rsLaSlvqyYy~~KK~~~  236 (534)
T KOG1194|consen  186 FPDEWTAEDIVLFEQAFQFFGKDFHKIRQALPHRSLASLVQYYYSWKKTRE  236 (534)
T ss_pred             CcccchHHHHHHHHHHHHHhcccHHHHHHHccCccHHHHHHHHHHHHHHhh
Confidence            456899999999999999999999999999999999999998877666543

>PF09111 SLIDE: SLIDE; InterPro: IPR015195 The SLIDE domain adopts a secondary structure comprising a main core of three alpha-helices

Probab=88.02  E-value=0.27  Score=39.65  Aligned_cols=47  Identities=34%  Similarity=0.506  Sum_probs=35.0

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCC---CCcccccccc------------ccCChhhhhhhcc
Q 025351           35 ERIKGPWSAEEDRILTRLVERYGP---RNWSLISRYI------------KGRSGKSCRLRWC   81 (254)
Q Consensus        35 ~~~kg~WT~eED~~L~~lV~~~g~---~nW~~Ia~~l------------~~Rs~~qcr~Rw~   81 (254)
                      ...+..||.+||.-|+-++.+||.   ++|..|-..+            ..||+..+..|-.
T Consensus        46 ~~~~k~yseeEDRfLl~~~~~~G~~~~~~~e~Ik~~Ir~~p~FrFDwf~kSRt~~el~rR~~  107 (118)
T PF09111_consen   46 NNKKKVYSEEEDRFLLCMLYKYGYDAEGNWEKIKQEIRESPLFRFDWFFKSRTPQELQRRCN  107 (118)
T ss_dssp             TSS-SSS-HHHHHHHHHHHHHHTTTSTTHHHHHHHHHHH-CGGCT-HHHHTS-HHHHHHHHH
T ss_pred             CCCCCCcCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCCCcccchhcccCCHHHHHHHHH
Confidence            455678999999999999999998   7899998765            2467766666653

It has a role in DNA binding, contacting DNA target sites similar to c-Myb (IPR014778 from INTERPRO) repeats or homeodomains []. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006338 chromatin remodeling, 0005634 nucleus; PDB: 2NOG_A 2Y9Y_A 2Y9Z_A 1OFC_X.

>PF11626 Rap1_C: TRF2-interacting telomeric protein/Rap1 - C terminal domain; InterPro: IPR021661 This family of proteins represents the C-terminal domain of the protein Rap-1, which plays a distinct role in silencing at the silent mating-type loci and telomeres []

Probab=86.79  E-value=0.38  Score=36.38  Aligned_cols=30  Identities=37%  Similarity=0.811  Sum_probs=17.9

Q ss_pred             CCCCcCCCCHHHHHHH--------HHHHHHhCCCCcccccc
Q 025351           34 PERIKGPWSAEEDRIL--------TRLVERYGPRNWSLISR   66 (254)
Q Consensus        34 p~~~kg~WT~eED~~L--------~~lV~~~g~~nW~~Ia~   66 (254)
                      |....|-||+|+|+.|        .+|+++||   +..|+.
T Consensus        43 P~n~~GiWT~eDD~~L~~~~~~~~~~L~~khG---~~~i~~   80 (87)
T PF11626_consen   43 PDNMPGIWTPEDDEMLRSGDKDDIERLIKKHG---EERIER   80 (87)
T ss_dssp             -TT-TT---HHHHHHHTS--HHHHHHHHHHH----HHHHHH
T ss_pred             CCCCCCCcCHHHHHHHHcCCHHHHHHHHHHhC---HHHHHH
Confidence            6667899999999999        56677787   455554

The Rap-1 C terminus adopts an all-helical fold. Rap1 carries out its function by recruiting the Sir3 and Sir4 proteins to chromatin via its C-terminal domain []. ; PDB: 3K6G_C 3CZ6_A 3OWT_A.

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=85.92  E-value=3.3  Score=42.81  Aligned_cols=44  Identities=9%  Similarity=0.191  Sum_probs=40.5

Q ss_pred             CCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHh
Q 025351           91 RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNST  134 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~  134 (254)
                      ..||+.|-.+.-+|+..|.+++-.|++.++++|-.+|...|...
T Consensus       620 d~WTp~E~~lF~kA~y~~~KDF~~v~km~~~KtVaqCVeyYYtW  663 (907)
T KOG4167|consen  620 DKWTPLERKLFNKALYTYSKDFIFVQKMVKSKTVAQCVEYYYTW  663 (907)
T ss_pred             ccccHHHHHHHHHHHHHhcccHHHHHHHhccccHHHHHHHHHHH
Confidence            47999999999999999999999999999999999998877543

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=84.50  E-value=0.54  Score=48.33  Aligned_cols=44  Identities=11%  Similarity=0.483  Sum_probs=39.7

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccc
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN   82 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~   82 (254)
                      ...||+.|-.++.+++..|. +++.+|++.++++|.+||-+.|..
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~-KDF~~v~km~~~KtVaqCVeyYYt  662 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYS-KDFIFVQKMVKSKTVAQCVEYYYT  662 (907)
T ss_pred             cccccHHHHHHHHHHHHHhc-ccHHHHHHHhccccHHHHHHHHHH
Confidence            35799999999999999998 689999999999999999887753

>KOG2656 consensus DNA methyltransferase 1-associated protein-1 [Chromatin structure and dynamics; Transcription]

Probab=84.17  E-value=1.9  Score=41.48  Aligned_cols=80  Identities=23%  Similarity=0.361  Sum_probs=54.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc-----ccc-CChhhhhhhccccC----------CCC-CCCCCCChHHHHHH
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRY-----IKG-RSGKSCRLRWCNQL----------SPS-VAHRPFSPAEDDTI  101 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~-----l~~-Rs~~qcr~Rw~~~L----------~p~-~~~~~WT~EED~~L  101 (254)
                      ..||.+|.+.|..|+.+|..+ |--|+..     ++. ||....++||..+.          ++. ++.-.+..|-|..=
T Consensus       131 n~WskeETD~LF~lck~fDLR-f~VIaDRyd~qq~~~sRTvEdLKeRyY~v~r~l~kAr~~s~sdllk~~~yd~e~Er~R  209 (445)
T KOG2656|consen  131 NSWSKEETDYLFDLCKRFDLR-FFVIADRYDNQQYKKSRTVEDLKERYYSVCRKLLKARAPSNSDLLKSLVYDAEHERER  209 (445)
T ss_pred             ccccHHHHHHHHHHHHhcCee-EEEEeeccchhhccccccHHHHHHHHHHHHHHHHHccCCCchhhhhccccchHHHHHH
Confidence            569999999999999999976 9999977     555 99999999986532          111 22334444444332


Q ss_pred             HHHHHhcCCChhhhhhcCCCCCHHHHHHH
Q 025351          102 LAAHARFGNRWATIARLLPGRTDNAVKNH  130 (254)
Q Consensus       102 l~~v~~~G~~W~~IA~~l~gRT~~q~k~R  130 (254)
                      .+          .+.+.+ .||+.|+..-
T Consensus       210 Kk----------~L~~L~-sRt~~qvaEE  227 (445)
T KOG2656|consen  210 KK----------YLERLL-SRTPEQVAEE  227 (445)
T ss_pred             HH----------HHHHHH-hcCHHHHHHH
Confidence            11          233444 7888888654

>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription]

Probab=82.28  E-value=0.8  Score=42.84  Aligned_cols=47  Identities=26%  Similarity=0.383  Sum_probs=37.2

Q ss_pred             cCCCCHHHHHHHHHHHHHh---------CCCCcccccccc----ccCChhhhhhhccccC
Q 025351           38 KGPWSAEEDRILTRLVERY---------GPRNWSLISRYI----KGRSGKSCRLRWCNQL   84 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~---------g~~nW~~Ia~~l----~~Rs~~qcr~Rw~~~L   84 (254)
                      -..|+.+|-..|+.+....         ....|..||..+    ..|++.||+.+|.+..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~g~~rs~~qck~K~~nl~  113 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAELGYPRSPKQCKAKIENLK  113 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence            3679999999999998853         112499999855    4599999999998743

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
1h88_C	159	Crystal Structure Of Ternary Protein-Dna Complex1 L		1e-34
1gv2_A	105	Crystal Structure Of C-Myb R2r3 Length = 105		1e-33
1mse_C	105	Solution Structure Of A Specific Dna Complex Of The		1e-33
1a5j_A	110	Chicken B-Myb Dna Binding Domain, Repeat 2 And Repe		5e-33
1h8a_C	128	Crystal Structure Of Ternary Protein-Dna Complex3 L		3e-32
3zqc_A	131	Structure Of The Trichomonas Vaginalis Myb3 Dna-Bin		1e-24
3osf_A	126	The Structure Of Protozoan Parasite Trichomonas Vag		4e-16
2k9n_A	107	Solution Nmr Structure Of The R2r3 Dna Binding Doma		3e-15
1mbj_A	53	Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53		3e-13
1idy_A	54	Structure Of Myb Transforming Protein, Nmr, Minimiz		5e-13
1gvd_A	52	Crystal Structure Of C-Myb R2 V103l Mutant Length =		9e-13
1gv5_A	52	Crystal Structure Of C-Myb R2 Length = 52		2e-12
1mbg_A	53	Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53		3e-12
1mbe_A	53	Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53		2e-04
1guu_A	52	Crystal Structure Of C-Myb R1 Length = 52		2e-04
2dim_A	70	Solution Structure Of The Myb_dna-Binding Domain Of		2e-04

>pdb|1H88|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex1 Length = 159

Iteration: 1
 Score =  143 bits (360), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 81/106 (76%)
Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V    +
Sbjct: 54  PELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 113
Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
           +  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+ 
Sbjct: 114 TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 159

>pdb|1GV2|A Chain A, Crystal Structure Of C-Myb R2r3 Length = 105

Iteration: 1
 Score =  140 bits (352), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 80/105 (76%)
Query: 35  ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
           E IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V    ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60
Query: 95  PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
             ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+ 
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1MSE|C Chain C, Solution Structure Of A Specific Dna Complex Of The Myb Dna- Binding Domain With Cooperative Recognition Helices Length = 105

Iteration: 1
 Score =  139 bits (350), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 59/103 (57%), Positives = 79/103 (76%)
Query: 37  IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96
           IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V    ++  
Sbjct: 3   IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEE 62
Query: 97  EDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
           ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+ 
Sbjct: 63  EDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 105

>pdb|1A5J|A Chain A, Chicken B-Myb Dna Binding Domain, Repeat 2 And Repeat3, Nmr, 32 Structures Length = 110

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 59/106 (55%), Positives = 78/106 (73%)
Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           P+ +KGPW+ EED+ +  LV++YG + W+LI++++KGR GK CR RW N L+P V    +
Sbjct: 3   PDLVKGPWTKEEDQKVIELVKKYGTKQWTLIAKHLKGRLGKQCRERWHNHLNPEVKKSSW 62
Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
           +  ED  I  AH   GNRWA IA+LLPGRTDNAVKNHWNST+KR+ 
Sbjct: 63  TEEEDRIIFEAHKVLGNRWAEIAKLLPGRTDNAVKNHWNSTIKRKV 108

>pdb|1H8A|C Chain C, Crystal Structure Of Ternary Protein-Dna Complex3 Length = 128

Iteration: 1
 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 60/106 (56%), Positives = 77/106 (72%)
Query: 34  PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPF 93
           PE  KGPW+ EED+ +   V++YGP+ WS I++++KGR GK CR RW N L+P V    +
Sbjct: 23  PELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSW 82
Query: 94  SPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
           +  ED  I  AH R GNRWA IA+LLPGRTDNAVKNHWNST++R+ 
Sbjct: 83  TEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRKV 128

>pdb|3ZQC|A Chain A, Structure Of The Trichomonas Vaginalis Myb3 Dna-Binding Domain Bound To A Promoter Sequence Reveals A Unique C- Terminal Beta-Hairpin Conformation Length = 131

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 45/102 (44%), Positives = 70/102 (68%)
Query: 37  IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96
           +KGP++  ED ++   V+  GP+NW  I+ ++  RS K CR RW N L P+V    ++P 
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60
Query: 97  EDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
           ED+TI   + + G++W+ IA+L+PGRTDNA+KN WNS++ +R
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKR 102

>pdb|3OSF|A Chain A, The Structure Of Protozoan Parasite Trichomonas Vaginalis Myb2 In Complex With Mre-2f-13 Dna Length = 126

Iteration: 1
 Score = 81.6 bits (200), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 36/94 (38%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 38  KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAE 97
           K  ++ EED +L R V ++G  +W +I+     R+ + CR RW N L+PS++H P++  E
Sbjct: 11  KQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEE 69
Query: 98  DDTILAAHARFGNRWATIARLLPGRTDNAVKNHW 131
           D  ++     +G +WA IA+  PGRTD  +KN W
Sbjct: 70  DALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRW 103

>pdb|2K9N|A Chain A, Solution Nmr Structure Of The R2r3 Dna Binding Domain Of Myb1 Protein From Protozoan Parasite Trichomonas Vaginalis Length = 107

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 61/103 (59%)
Query: 38  KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAE 97
           K  ++ EED  L +LV RYG ++W  IS+ +  R+ + CR RW N ++P++   P+SP E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60
Query: 98  DDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTR 140
           D  +   +A +G +W  I++ L  R+DN ++N W    + R +
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAK 103

>pdb|1MBJ|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 3 Length = 53

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/52 (59%), Positives = 38/52 (73%)
Query: 88  VAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
           V    ++  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+ 
Sbjct: 1   VKKTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 52

>pdb|1IDY|A Chain A, Structure Of Myb Transforming Protein, Nmr, Minimized Average Structure Length = 54

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 30/53 (56%), Positives = 38/53 (71%)
Query: 87  SVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT 139
            V    ++  ED  +  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+ 
Sbjct: 2   EVKKTSWTEEEDRILYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRKV 54

>pdb|1GVD|A Chain A, Crystal Structure Of C-Myb R2 V103l Mutant Length = 52

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 29/50 (58%), Positives = 41/50 (82%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          IKGPW+ EED+ L +LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1GV5|A Chain A, Crystal Structure Of C-Myb R2 Length = 52

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 41/50 (82%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBG|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 2 Length = 53

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 28/50 (56%), Positives = 40/50 (80%)
Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          IKGPW+ EED+ +  LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRVIELVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>pdb|1MBE|A Chain A, Mouse C-Myb Dna-Binding Domain Repeat 1 Length = 53

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          K  W+ EED  L +LVE+ G  +W +I+ Y+  R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|1GUU|A Chain A, Crystal Structure Of C-Myb R1 Length = 52

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          K  W+ EED  L +LVE+ G  +W +I+ Y+  R+   C+ RW   L+P
Sbjct: 3  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>pdb|2DIM|A Chain A, Solution Structure Of The Myb_dna-Binding Domain Of Human Cell Division Cycle 5-Like Protein Length = 70

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 41 WSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
          W   ED IL   V +YG   WS I+  +  +S K C+ RW   L PS+    +S
Sbjct: 12 WRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWS 65

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	4e-68
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	2e-67
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	2e-67
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	1e-64
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	2e-63
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-62
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	3e-36
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	5e-29
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	1e-28
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	8e-27
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	4e-25
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	1e-12
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	2e-04
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	3e-12
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	8e-12
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	6e-04
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	3e-11
1vf9_A	64	Telomeric repeat binding factor 2; MYB, helix-turn	2e-04
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	3e-11
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	1e-10
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	1e-10
1w0u_A	55	Telomeric repeat binding factor 2; telomere, DNA-b	9e-05
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	4e-10
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	8e-07
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	9e-10
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	2e-08
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	4e-08
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-04
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	4e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	5e-08
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	3e-06
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	1e-07
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	7e-05
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	1e-07
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	2e-07
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	2e-06
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	3e-06
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	3e-05
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	1e-04

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Length = 128

 Score =  205 bits (524), Expect = 4e-68
 Identities = 60/106 (56%), Positives = 77/106 (72%)

Query: 33  KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRP 92
            PE  KGPW+ EED+ +   V++YGP+ WS I++++KGR GK CR RW N L+P V    
Sbjct: 22  NPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTS 81

Query: 93  FSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
           ++  ED  I  AH R GNRWA IA+LLPGRTDNAVKNHWNST++R+
Sbjct: 82  WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK 127

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Length = 131

 Score =  204 bits (520), Expect = 2e-67
 Identities = 45/117 (38%), Positives = 73/117 (62%)

Query: 37  IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96
           +KGP++  ED ++   V+  GP+NW  I+ ++  RS K CR RW N L P+V    ++P 
Sbjct: 1   MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPE 60

Query: 97  EDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQ 153
           ED+TI   + + G++W+ IA+L+PGRTDNA+KN WNS++ +R   +    +     +
Sbjct: 61  EDETIFRNYLKLGSKWSVIAKLIPGRTDNAIKNRWNSSISKRISTNSNHKEILLPDR 117

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Length = 105

 Score =  202 bits (517), Expect = 2e-67
 Identities = 60/104 (57%), Positives = 80/104 (76%)

Query: 35  ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFS 94
           E IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V    ++
Sbjct: 1   ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWT 60

Query: 95  PAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
             ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 61  EEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 104

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Length = 126

 Score =  196 bits (501), Expect = 1e-64
 Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 1/123 (0%)

Query: 31  THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAH 90
            +     K  ++ EED +L R V ++G  +W +I+     R+ + CR RW N L+PS++H
Sbjct: 4   VNLKAAKKQKFTPEEDEMLKRAVAQHG-SDWKMIAATFPNRNARQCRDRWKNYLAPSISH 62

Query: 91  RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQ 150
            P++  ED  ++     +G +WA IA+  PGRTD  +KN W +   +       QM  H 
Sbjct: 63  TPWTAEEDALLVQKIQEYGRQWAIIAKFFPGRTDIHIKNRWVTISNKLGIPQTQQMLEHH 122

Query: 151 QQQ 153
              
Sbjct: 123 HHH 125

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Length = 107

 Score =  193 bits (492), Expect = 2e-63
 Identities = 36/104 (34%), Positives = 61/104 (58%)

Query: 38  KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAE 97
           K  ++ EED  L +LV RYG ++W  IS+ +  R+ + CR RW N ++P++   P+SP E
Sbjct: 1   KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEE 60

Query: 98  DDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           D  +   +A +G +W  I++ L  R+DN ++N W    + R + 
Sbjct: 61  DMLLDQKYAEYGPKWNKISKFLKNRSDNNIRNRWMMIARHRAKH 104

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  191 bits (488), Expect = 3e-62
 Identities = 61/106 (57%), Positives = 81/106 (76%)

Query: 33  KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRP 92
            PE IKGPW+ EED+ + +LV++YGP+ WS+I++++KGR GK CR RW N L+P V    
Sbjct: 53  NPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS 112

Query: 93  FSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR 138
           ++  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++R+
Sbjct: 113 WTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 158

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Length = 159

 Score =  125 bits (316), Expect = 3e-36
 Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 37  IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA 96
            K  W+ EED  L +LVE+ G  +W +I+ Y+  R+   C+ RW   L+P +   P++  
Sbjct: 5   GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKE 64

Query: 97  EDDTILAAHARFG-NRWATIARLLPGRTDNAV----KNHWNSTLKRR 138
           ED  ++    ++G  RW+ IA+ L GR          NH N  +K+ 
Sbjct: 65  EDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKT 111

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score =  103 bits (259), Expect = 5e-29
 Identities = 21/67 (31%), Positives = 29/67 (43%)

Query: 31 THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAH 90
          +       G W   ED IL   V +YG   WS I+  +  +S K C+ RW   L PS+  
Sbjct: 2  SSGSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKK 61

Query: 91 RPFSPAE 97
            +S   
Sbjct: 62 TEWSGPS 68

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Length = 52

 Score =  102 bits (256), Expect = 1e-28
 Identities = 29/50 (58%), Positives = 41/50 (82%)

Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          IKGPW+ EED+ L +LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Length = 52

 Score = 97.3 bits (243), Expect = 8e-27
 Identities = 19/50 (38%), Positives = 29/50 (58%)

Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
           K  W+ EED  L +LVE+ G  +W +I+ Y+  R+   C+ RW   L+P
Sbjct: 2  GKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 51

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Length = 60

 Score = 93.1 bits (232), Expect = 4e-25
 Identities = 16/49 (32%), Positives = 27/49 (55%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          K  W+ EED  L  LV ++G ++W  ++ +   R+ + C+ RW   LS 
Sbjct: 8  KVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSG 56

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 60.4 bits (147), Expect = 1e-12
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIK--GRSGKSCRLRWCN 82
          +  W  EED+ L   V +YG  NWS I  + K   R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Length = 53

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 91  RPFSPAEDDTILAAHARFGN-RWATIARLLP--GRTDNAVKNHWNSTLKRR 138
           + +   ED  + +   ++G   W+ I        RT   +K+ W +  K +
Sbjct: 3   QAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 53

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Length = 122

 Score = 60.9 bits (147), Expect = 3e-12
 Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 11/116 (9%)

Query: 8   STSSSESSSSESSLSGNNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRY 67
           S  +  +S + +++   ++++R      RI+ P++  E  +L   VE  G   W  +   
Sbjct: 2   SPFADPNSLALANVP-LSRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFR 60

Query: 68  ----IKGRSGKSCRLRWCNQL------SPSVAHRPFSPAEDDTILAAHARFGNRWA 113
               +  R+    + +W   +             P      D +LAA A +    +
Sbjct: 61  AFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVPQELLDRVLAAQAYWSVDSS 116

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 58.3 bits (141), Expect = 8e-12
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 2/52 (3%)

Query: 33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI--KGRSGKSCRLRWCN 82
             R +  W  EED+ L   V +YG  NWS I  +     R+    + RW  
Sbjct: 5  HRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 56

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Length = 69

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 10/52 (19%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 90  HRPFSPAEDDTILAAHARFGN-RWATIARLLP--GRTDNAVKNHWNSTLKRR 138
            + +   ED  + +   ++G   W+ I        RT   +K+ W +  K +
Sbjct: 10  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK 61

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 24 NNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRY--IKGRSGKSCRLRWC 81
          ++ T          K  W+ EE   +   V++YG  NW+ IS+      R+    + RW 
Sbjct: 3  DSTTNI------TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR 56

Query: 82 N 82
           
Sbjct: 57 T 57

>1vf9_A Telomeric repeat binding factor 2; MYB, helix-turn-helix, telomere, DNA binding protein; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1xg1_A 1vfc_A Length = 64

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 82  NQLSPSVAHRPFSPAEDDTILAAHARFGN-RWATIARLLP--GRTDNAVKNHWNSTLKR 137
           +  +     + ++  E + + A   ++G   WA I++  P   RT   +K+ W  T+KR
Sbjct: 3   DSTTNITKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 60

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Length = 60

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 10/50 (20%), Positives = 20/50 (40%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS 87
             W+A+E+  L   V   G  NW  ++  +  ++ + C   +    S  
Sbjct: 8  DPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP 57

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Length = 121

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 24  NNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRY----IKGRSGKSCRLR 79
           N K++R+     RI+ P+S  E   L   VE  G   W  +          R+    + +
Sbjct: 3   NQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDK 62

Query: 80  WCNQL------SPSVAHRPFSPAEDDTILAAHARFGNRWA 113
           W   +             P      D +LAAHA +  +  
Sbjct: 63  WKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAYWSQQQG 102

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYI--KGRSGKSCRLRWCN 82
          K  W+ EE   +   V++YG  NW+ IS+      R+    + RW  
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRT 48

>1w0u_A Telomeric repeat binding factor 2; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle, nuclear protein; 1.8A {Homo sapiens} SCOP: a.4.1.4 Length = 55

 Score = 38.5 bits (90), Expect = 9e-05
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 91  RPFSPAEDDTILAAHARFGN-RWATIARLLP--GRTDNAVKNHWNSTLKR 137
           + ++  E + + A   ++G   WA I++  P   RT   +K+ W  T+KR
Sbjct: 3   QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWR-TMKR 51

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 53.7 bits (129), Expect = 4e-10
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 2/54 (3%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHR 91
          K  WS EE+  L  L +   P  W  I+  I GR+   C   +   L  +    
Sbjct: 9  KTEWSREEEEKLLHLAKLM-PTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQRD 60

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 44.4 bits (105), Expect = 8e-07
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 86  PSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
            S     +S  E++ +L        +W TIA ++ GRT      H+   L +  + 
Sbjct: 5   SSGKKTEWSREEEEKLLHLAKLMPTQWRTIAPII-GRTAAQCLEHYEFLLDKAAQR 59

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Length = 105

 Score = 53.9 bits (129), Expect = 9e-10
 Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 10/101 (9%)

Query: 27  TRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRY----IKGRSGKSCRLRW-- 80
           +        RI+ P+S  E   L + VE+ G   W  +          R+    + +W  
Sbjct: 2   SHMLEDPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKT 61

Query: 81  ----CNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIAR 117
                          P      + +L AH  +  +     +
Sbjct: 62  LVHTAKISPQQRRGEPVPQELLNRVLNAHGYWTQQQMQQLQ 102

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Length = 246

 Score = 52.7 bits (125), Expect = 2e-08
 Identities = 23/159 (14%), Positives = 43/159 (27%), Gaps = 14/159 (8%)

Query: 34  PERIKGPWSAEEDRILTRLV-----ERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSV 88
           P   K  ++ EED  +  +V      R     +  IS Y+   +G S R R+   LS  +
Sbjct: 4   PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRL 63

Query: 89  AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQP 148
            +          +       GN   T           ++K  +++           +   
Sbjct: 64  EYVYEVDKFGKLVRDDD---GNLIKT------KVLPPSIKRKFSADEDYTLAIAVKKQFY 114

Query: 149 HQQQQLMDSVDNGGDNNNDNENIGLGGFAVSGSHHQQQQ 187
               Q+          + D              +H    
Sbjct: 115 RDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGS 153

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 22 SGNNKTRRATHKPERIKGPWSAEEDRILTRLVERY---GPRNWSLISRYIKGRSGKSCRL 78
          S  +       +    + PW+  + ++L   +++Y       W  I+R +  +S + C  
Sbjct: 2  SSGSSGSLRKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIA 61

Query: 79 RW 80
          R+
Sbjct: 62 RY 63

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 37.2 bits (86), Expect = 3e-04
 Identities = 8/55 (14%), Positives = 20/55 (36%), Gaps = 4/55 (7%)

Query: 82  NQLSPSVAHRPFSPAEDDTILAAHARF----GNRWATIARLLPGRTDNAVKNHWN 132
            +     A  P++  +   +  A  ++     + W  IAR +P ++       + 
Sbjct: 10  RKERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYK 64

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Length = 83

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 40  PWSAEEDRILTRLVERYGPRNWSLISRY----IKGRSGKSCRLRWCNQL------SPSVA 89
           P+S  E   L   VE  G   W  +          R+    + +W   +           
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 90  HRPFSPAEDDTILAAHARFGNR 111
             P      D +LAAHA +  +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 48.4 bits (115), Expect = 5e-08
 Identities = 12/59 (20%), Positives = 27/59 (45%), Gaps = 1/59 (1%)

Query: 24 NNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN 82
          ++    ++ +       W+ EE     + +  +G RNWS I+R +  ++   C+  + N
Sbjct: 2  HHHHHHSSGRENLYFQGWTEEEMGTAKKGLLEHG-RNWSAIARMVGSKTVSQCKNFYFN 59

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 13/64 (20%), Positives = 29/64 (45%)

Query: 82  NQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE 141
           +    ++  + ++  E  T        G  W+ IAR++  +T +  KN + +  KR+  +
Sbjct: 8   SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQNLD 67

Query: 142 HPVQ 145
             +Q
Sbjct: 68  EILQ 71

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 47.1 bits (112), Expect = 1e-07
 Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 30 ATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCR 77
           +         W+ EE  +  + + ++G R W+ IS+ I  R+    +
Sbjct: 1  GSSGSSGYSVKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVK 47

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.0 bits (91), Expect = 7e-05
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 85  SPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPV 144
             S     ++  E +      A+FG RW  I++L+  RT   VK++     K + +    
Sbjct: 4   GSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLD 63

Query: 145 QMQPHQQ 151
           +  P+Q+
Sbjct: 64  KETPNQK 70

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Length = 58

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 41 WSAEEDRILTRLVERYGPRNWSLISRYI-KGRSGKSCRLRWCN 82
          W A+E+ +L    E  G  NW+ I+ Y+   R+ + CR  +  
Sbjct: 12 WGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLK 54

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 46.4 bits (110), Expect = 2e-07
 Identities = 11/48 (22%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRW 80
          K       W+ +E  +L   +E Y   +W+ +S ++  R+   C L +
Sbjct: 13 KGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHF 59

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Length = 73

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRW 80
           G ++ EE   L  L  ++G  +W+ I   + GRS  S + R 
Sbjct: 23 VGKYTPEEIEKLKELRIKHG-NDWATIGAAL-GRSASSVKDRC 63

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 5/52 (9%)

Query: 33 KPERIKGPWSAEEDRILTRLVERYGP-----RNWSLISRYIKGRSGKSCRLR 79
                  W+ EE + L +L+ +Y P     R W  I+  +  R+ K    +
Sbjct: 3  SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQ 54

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A Length = 94

 Score = 40.6 bits (95), Expect = 3e-05
 Identities = 8/48 (16%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 29 RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSC 76
             +K  ++   WS +E         ++  +N+ LI+ +++ ++   C
Sbjct: 34 MKVYKDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAEC 80

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 61

 Score = 38.1 bits (89), Expect = 1e-04
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 1/47 (2%)

Query: 30 ATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSC 76
           +    +    W+  E  I      ++ P+N+ LI+ Y++ +S   C
Sbjct: 4  GSSGDRQFMNVWTDHEKEIFKDKFIQH-PKNFGLIASYLERKSVPDC 49

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	100.0
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	100.0
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	100.0
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	100.0
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	100.0
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	99.97
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	99.91
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.86
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.78
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.78
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.77
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.75
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.73
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.72
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.71
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	99.71
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.7
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.7
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.68
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	99.68
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	99.65
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	99.65
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	99.64
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.64
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.64
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	99.64
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	99.62
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	99.62
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.61
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	99.61
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	99.6
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	99.6
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	99.6
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.58
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.58
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	99.57
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	99.57
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	99.55
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	99.55
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.29
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.51
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.5
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	99.49
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.49
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	99.46
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.45
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	99.4
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	99.39
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	99.38
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	99.06
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	99.35
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	99.35
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	99.34
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	99.32
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.23
2cjj_A	93	Radialis; plant development, DNA-binding protein,	99.1
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	99.08
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	98.97
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.89
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.89
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	98.86
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.84
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	98.75
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.68
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.64
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.62
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	98.52
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	98.49
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	98.48
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	98.37
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.28
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.19
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	98.16
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	98.09
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	97.35
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.03
2crg_A	70	Metastasis associated protein MTA3; transcription	97.83
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.79
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	97.77
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.73
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	97.6
2crg_A	70	Metastasis associated protein MTA3; transcription	97.59
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.59
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	97.49
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	97.45
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	97.12
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	96.09
2ebi_A	86	DNA binding protein GT-1; DNA-binding domain, phos	96.99
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.97
4iej_A	93	DNA methyltransferase 1-associated protein 1; DNA	95.56
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	94.51
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	93.37
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	92.82
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	91.57
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	91.37
2xb0_X	270	Chromo domain-containing protein 1; hydrolase, DNA	89.1
2y9y_A	374	Imitation switch protein 1 (DEL_ATPase); transcrip	80.16

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=100.00  E-value=2.7e-35  Score=229.78  Aligned_cols=104  Identities=58%  Similarity=1.136  Sum_probs=99.6

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhh
Q 025351           35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWAT  114 (254)
Q Consensus        35 ~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~  114 (254)
                      ++++|+||+|||++|+.+|++||..+|..||..|++|+++||+.||.++|+|.+++++||+|||++|++++.+||++|..
T Consensus         1 ~l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~   80 (105)
T 1gv2_A            1 ELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRIIYQAHKRLGNRWAE   80 (105)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCCCCHHHHHHHHHHHHHHSSCHHH
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccCCCHHHHHHHHHHHHHhCCCHHH
Confidence            36789999999999999999999889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCCHHHHHHHHHHhhccc
Q 025351          115 IARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus       115 IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      ||+.|||||+++|++||+.+++++
T Consensus        81 Ia~~l~gRt~~~~k~rw~~~~~~~  104 (105)
T 1gv2_A           81 IAKLLPGRTDNAIKNHWNSTMRRK  104 (105)
T ss_dssp             HHTTCTTCCHHHHHHHHHHHTC--
T ss_pred             HHHHcCCCCHHHHHHHHHHHHhcc
Confidence            999999999999999999999875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=100.00  E-value=7.4e-35  Score=236.25  Aligned_cols=107  Identities=42%  Similarity=0.935  Sum_probs=103.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhh
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIA  116 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA  116 (254)
                      .||+||+|||++|+.+|.+||..+|..||..|++|++.||+.||.++|+|.+++++||+|||++|+++|.+||++|..||
T Consensus         1 vKg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~~~~~G~~W~~Ia   80 (131)
T 3zqc_A            1 MKGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHAWTPEEDETIFRNYLKLGSKWSVIA   80 (131)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSCCCHHHHHHHHHHHHHSCSCHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCCCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            47999999999999999999988999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCCHHHHHHHHHHhhcccccCCC
Q 025351          117 RLLPGRTDNAVKNHWNSTLKRRTREHP  143 (254)
Q Consensus       117 ~~l~gRT~~q~k~Rw~~~lk~~~~~~~  143 (254)
                      .+|+|||+++|++||+++|++++....
T Consensus        81 ~~l~gRt~~~~k~rw~~~l~~~~~~~~  107 (131)
T 3zqc_A           81 KLIPGRTDNAIKNRWNSSISKRISTNS  107 (131)
T ss_dssp             TTSTTCCHHHHHHHHHHTTGGGCCCCT
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999987765

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=100.00  E-value=4.3e-35  Score=236.55  Aligned_cols=117  Identities=52%  Similarity=0.971  Sum_probs=103.4

Q ss_pred             CCCCcCcccc-CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHH
Q 025351           22 SGNNKTRRAT-HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDT  100 (254)
Q Consensus        22 s~~~k~r~~~-~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~  100 (254)
                      ...|+.|+.. ++|..++|+||+|||++|+++|++||..+|..||..|++|++.||+.||.++|+|.+++++||+|||++
T Consensus        10 ~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~   89 (128)
T 1h8a_C           10 DVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRI   89 (128)
T ss_dssp             ------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCSCCCHHHHHH
T ss_pred             HHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccccCCHHHHHH
Confidence            3457777754 699999999999999999999999998889999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351          101 ILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus       101 Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      |++++.+||++|..||+.|||||+++|++||+.+++++
T Consensus        90 L~~~~~~~G~~W~~Ia~~l~gRt~~~~k~r~~~~~~~~  127 (128)
T 1h8a_C           90 IYQAHKRLGNRWAEIAKLLPGRTDNAVKNHWNSTMRRK  127 (128)
T ss_dssp             HHHHHHHHCSCHHHHGGGSTTCCHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHCcCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999998875

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=100.00  E-value=5.7e-35  Score=229.28  Aligned_cols=104  Identities=35%  Similarity=0.727  Sum_probs=100.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhh
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIAR  117 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~  117 (254)
                      ||+||+|||++|+.+|.+||..+|..||..|++|+++||+.||.++|+|.+++++||+|||.+|++++.+||++|..||+
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~WT~eEd~~L~~~~~~~G~~W~~Ia~   80 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDPWSPEEDMLLDQKYAEYGPKWNKISK   80 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCCCCHHHHHHHHHHHHHTCSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccccCHHHHHHHHHHHHHhCcCHHHHHH
Confidence            68999999999999999999889999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCHHHHHHHHHHhhcccccC
Q 025351          118 LLPGRTDNAVKNHWNSTLKRRTRE  141 (254)
Q Consensus       118 ~l~gRT~~q~k~Rw~~~lk~~~~~  141 (254)
                      .|||||+++|++||+.++++..+.
T Consensus        81 ~l~gRt~~~~k~rw~~l~r~~~~~  104 (107)
T 2k9n_A           81 FLKNRSDNNIRNRWMMIARHRAKH  104 (107)
T ss_dssp             HHSSSCHHHHHHHHHHHHHHHHSS
T ss_pred             HCCCCCHHHHHHHHHHHHhhHHHh
Confidence            999999999999999988876543

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=100.00  E-value=6.2e-34  Score=229.52  Aligned_cols=106  Identities=34%  Similarity=0.721  Sum_probs=100.8

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCCh
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRW  112 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W  112 (254)
                      ++..++|+||+|||++|+.+|.+||. +|..||+.|++|+++||+.||.++|+|.+++++||+|||++|++++.+||++|
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L~~~v~~~G~~W   84 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGS-DWKMIAATFPNRNARQCRDRWKNYLAPSISHTPWTAEEDALLVQKIQEYGRQW   84 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTT-CHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSCCCHHHHHHHHHHHHHHCSCH
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCC-CHHHHHHHcCCCCHHHHHHHHhhhcccccccccCCHHHHHHHHHHHHHHCcCH
Confidence            45677899999999999999999997 89999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351          113 ATIARLLPGRTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus       113 ~~IA~~l~gRT~~q~k~Rw~~~lk~~~  139 (254)
                      ..||+.|+|||+++|++||+.++++..
T Consensus        85 ~~Ia~~l~gRt~~~~k~rw~~l~~k~~  111 (126)
T 3osg_A           85 AIIAKFFPGRTDIHIKNRWVTISNKLG  111 (126)
T ss_dssp             HHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHhcC
Confidence            999999999999999999998887754

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=100.00  E-value=1.7e-33  Score=234.83  Aligned_cols=126  Identities=26%  Similarity=0.634  Sum_probs=81.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCC-Chhh
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGN-RWAT  114 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~  114 (254)
                      ..+++||+|||++|+++|.+||..+|..||..|++|++.||+.||.++|+|.+.+++||+|||++|+++|..||. +|..
T Consensus         4 ~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~   83 (159)
T 1h89_C            4 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSV   83 (159)
T ss_dssp             ---------------------------------------CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHH
Confidence            568999999999999999999988999999999999999999999999999999999999999999999999996 6999


Q ss_pred             hhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351          115 IARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD  163 (254)
Q Consensus       115 IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~  163 (254)
                      ||..|+|||+.||++||+++|.+...+.+  |+++|+..|++++..+|.
T Consensus        84 Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~--WT~eEd~~L~~~~~~~g~  130 (159)
T 1h89_C           84 IAKHLKGRIGKQCRERWHNHLNPEVKKTS--WTEEEDRIIYQAHKRLGN  130 (159)
T ss_dssp             HHHTSTTCCHHHHHHHHHHTTCTTSCCSC--CCHHHHHHHHHHHHHHCS
T ss_pred             HHHHcCCCCHHHHHHHHHHHhCccccccC--CChHHHHHHHHHHHHHCC
Confidence            99999999999999999999999877654  889999999999988763

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=99.97  E-value=2.8e-32  Score=227.45  Aligned_cols=116  Identities=53%  Similarity=1.036  Sum_probs=108.2

Q ss_pred             CCCcCccc-cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHH
Q 025351           23 GNNKTRRA-THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTI  101 (254)
Q Consensus        23 ~~~k~r~~-~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~L  101 (254)
                      ..|+.|+. .++|.+++|+||+|||++|+.+|.+||..+|..||..|++|++.||+.||.++|+|.+++++||+|||.+|
T Consensus        42 ~qcr~Rw~~~l~p~~~~~~Wt~eEd~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~WT~eEd~~L  121 (159)
T 1h89_C           42 VQCQHRWQKVLNPELIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTSWTEEEDRII  121 (159)
T ss_dssp             -CHHHHHHTTTCTTCCCSCCCHHHHHHHHHHHHHHCSCCHHHHHHTSTTCCHHHHHHHHHHTTCTTSCCSCCCHHHHHHH
T ss_pred             HHHHHHHHHccCCCcCCCCCChHHHHHHHHHHHHhCcccHHHHHHHcCCCCHHHHHHHHHHHhCccccccCCChHHHHHH
Confidence            44666654 46899999999999999999999999987899999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351          102 LAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus       102 l~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      ++++.+||++|+.||+.|||||+++|++||+.+++++
T Consensus       122 ~~~~~~~g~~W~~Ia~~l~gRt~~~~knr~~~~~r~~  158 (159)
T 1h89_C          122 YQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK  158 (159)
T ss_dssp             HHHHHHHCSCHHHHHTTSTTCCHHHHHHHHHTTTCC-
T ss_pred             HHHHHHHCCCHHHHHHHCCCCCHHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999999999875

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=99.91  E-value=1e-24  Score=175.61  Aligned_cols=98  Identities=22%  Similarity=0.582  Sum_probs=71.9

Q ss_pred             cccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcccccCC
Q 025351           64 ISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKRRTREH  142 (254)
Q Consensus        64 Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~  142 (254)
                      ||+.||+|++.||+.||.++|+|.+.+++||+|||++|+++|..||. +|..||..|+|||+.||++||+++|.+...+.
T Consensus         1 Ia~~~~~Rt~~qC~~Rw~~~l~p~~~k~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~   80 (128)
T 1h8a_C            1 MEAVIKNRTDVQCQHRWQKVLNPELNKGPWTKEEDQRVIEHVQKYGPKRWSDIAKHLKGRIGKQCRERWHNHLNPEVKKT   80 (128)
T ss_dssp             ---------------------CTTCCCSCCCHHHHHHHHHHHHHTCSCCHHHHHHHSSSCCHHHHHHHHHHTTCSSSCCS
T ss_pred             CccccCCCCHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhcCCcHHHHHHHHHHhcccccccc
Confidence            78999999999999999999999999999999999999999999996 69999999999999999999999999988765


Q ss_pred             CCCCChhHHHHHHHHhhcCCC
Q 025351          143 PVQMQPHQQQQLMDSVDNGGD  163 (254)
Q Consensus       143 ~~~~~~~e~~~L~~~~~~~~~  163 (254)
                      +  |+++|+..|++++..+|.
T Consensus        81 ~--WT~eEd~~L~~~~~~~G~   99 (128)
T 1h8a_C           81 S--WTEEEDRIIYQAHKRLGN   99 (128)
T ss_dssp             C--CCHHHHHHHHHHHHHHCS
T ss_pred             c--CCHHHHHHHHHHHHHHCc
Confidence            4  889999999999998773

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=6.7e-23  Score=149.01  Aligned_cols=65  Identities=32%  Similarity=0.671  Sum_probs=62.8

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHHH
Q 025351           34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAED   98 (254)
Q Consensus        34 p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED   98 (254)
                      +.+++|+||+|||++|+++|.+||..+|..||..|++|+++||+.||.++|+|.+++++||+|||
T Consensus         5 ~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eEd   69 (70)
T 2dim_A            5 SSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPSS   69 (70)
T ss_dssp             SCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHhc
Confidence            56788999999999999999999988999999999999999999999999999999999999998

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.78  E-value=5.8e-20  Score=146.89  Aligned_cols=91  Identities=25%  Similarity=0.408  Sum_probs=84.2

Q ss_pred             CCcCccccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccCChhhhhhhccccCC-----CCCCCC-CC
Q 025351           24 NNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI----KGRSGKSCRLRWCNQLS-----PSVAHR-PF   93 (254)
Q Consensus        24 ~~k~r~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l----~~Rs~~qcr~Rw~~~L~-----p~~~~~-~W   93 (254)
                      ++|.++....+.+++++||+|||++|+.+|++||..+|..|++.+    ++||..+|++||+++|.     |.++++ +|
T Consensus         3 ~~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~krg~~~   82 (121)
T 2juh_A            3 NQKSKRSELSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPV   82 (121)
T ss_dssp             CCCCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCCCSCC
T ss_pred             cccCCCccccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccCCCCC
Confidence            456666777889999999999999999999999988999999984    89999999999999997     999999 99


Q ss_pred             ChHHHHHHHHHHHhcCCChhh
Q 025351           94 SPAEDDTILAAHARFGNRWAT  114 (254)
Q Consensus        94 T~EED~~Ll~~v~~~G~~W~~  114 (254)
                      +++|+..|+.+++.+||+|.+
T Consensus        83 p~e~~~rv~~~h~~~gn~~~~  103 (121)
T 2juh_A           83 PQDLLDRVLAAHAYWSQQQGK  103 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHHHccchhc
Confidence            999999999999999999987

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.78  E-value=1.5e-19  Score=158.65  Aligned_cols=105  Identities=29%  Similarity=0.431  Sum_probs=92.4

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCC-----ccccccccccCChhhhhhhccccCCCCCC-------------------
Q 025351           34 PERIKGPWSAEEDRILTRLVERYGPRN-----WSLISRYIKGRSGKSCRLRWCNQLSPSVA-------------------   89 (254)
Q Consensus        34 p~~~kg~WT~eED~~L~~lV~~~g~~n-----W~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~-------------------   89 (254)
                      +..++++||+|||++|+++|.+||...     |..||+.|||||+.||+.||.++|.+.+.                   
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln~vy~~ded~~Li~d~~Gn~   83 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   83 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcccccccCcchhhhhccCCCc
Confidence            356788999999999999999998642     99999999999999999999999999986                   


Q ss_pred             ----------CCCCChHHHHHHHHHHHh-c--------------------------------------------------
Q 025351           90 ----------HRPFSPAEDDTILAAHAR-F--------------------------------------------------  108 (254)
Q Consensus        90 ----------~~~WT~EED~~Ll~~v~~-~--------------------------------------------------  108 (254)
                                +..||.+||-.|+..+.+ |                                                  
T Consensus        84 ikis~lp~siK~rftaeeDy~L~~~i~~~f~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~  163 (246)
T 1ign_A           84 IKTKVLPPSIKRKFSADEDYTLAIAVKKQFYRDLFQIDPDTGRSLITDEDTPTAIARRNMTMDPNHVPGSEPNFAAYRTQ  163 (246)
T ss_dssp             CEESSCCCCSCCCCCHHHHHHHHHHHHHHHHHHHHCBCSSSCCBCC-------------------------------CCC
T ss_pred             eeeeccCccccCccchhccHHHHHHHHHHHhhhhhhcCccccccccccccchhhhhhhhcccCccccccCCcchhhhccc
Confidence                      789999999999999876 2                                                  


Q ss_pred             ---CC----ChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351          109 ---GN----RWATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus       109 ---G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                         |.    .|..||+.+|+||.+++|+||+..|+..
T Consensus       164 ~~~gp~~~~~fk~ia~~~P~HT~~SWRdRyrKfl~~~  200 (246)
T 1ign_A          164 SRRGPIAREFFKHFAEEHAAHTENAWRDRFRKFLLAY  200 (246)
T ss_dssp             CCCCCCCTTHHHHHHHHTTTSCHHHHHHHHHHTHHHH
T ss_pred             cccCcchHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Confidence               11    5999999999999999999999888765

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.77  E-value=7.1e-19  Score=140.76  Aligned_cols=87  Identities=23%  Similarity=0.399  Sum_probs=78.7

Q ss_pred             CcCccccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccCChhhhhhhccccC-----CCCCCCCCCCh
Q 025351           25 NKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI----KGRSGKSCRLRWCNQL-----SPSVAHRPFSP   95 (254)
Q Consensus        25 ~k~r~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l----~~Rs~~qcr~Rw~~~L-----~p~~~~~~WT~   95 (254)
                      .|.+.......+++++||+|||+.|+++|++||.++|..|++.+    ++||..||++||.+++     +|.++++.|++
T Consensus        18 ~k~~~~~~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr~~~~p   97 (122)
T 2roh_A           18 SRSKRPDFGQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRRGAPVP   97 (122)
T ss_dssp             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCCCSSCC
T ss_pred             ccCCCcCcCCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccCCCCCC
Confidence            44445556777889999999999999999999998999999874    8999999999999999     89999999999


Q ss_pred             HH-HHHHHHHHHhcCCC
Q 025351           96 AE-DDTILAAHARFGNR  111 (254)
Q Consensus        96 EE-D~~Ll~~v~~~G~~  111 (254)
                      +| +..|+.+++.+||+
T Consensus        98 ~e~~~~v~~~h~~~g~~  114 (122)
T 2roh_A           98 QELLDRVLAAQAYWSVD  114 (122)
T ss_dssp             HHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHhhH
Confidence            99 89999999999985

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.75  E-value=6.2e-19  Score=129.40  Aligned_cols=62  Identities=23%  Similarity=0.325  Sum_probs=48.5

Q ss_pred             hhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351           76 CRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus        76 cr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~  139 (254)
                      ..-||.++|+|.+++++||+|||++|++++++||++|+.||+.| |||++|||+||+. |++.+
T Consensus         9 ~~~~~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~kW~~IA~~l-gRt~~q~knRw~~-L~~~~   70 (73)
T 2llk_A            9 SGRENLYFQGDRNHVGKYTPEEIEKLKELRIKHGNDWATIGAAL-GRSASSVKDRCRL-MKDTC   70 (73)
T ss_dssp             ----------CCCCCCSSCHHHHHHHHHHHHHHSSCHHHHHHHH-TSCHHHHHHHHHH-CSCCC
T ss_pred             cCcceeeecCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHh-CCCHHHHHHHHHH-HHHHc
Confidence            45689999999999999999999999999999999999999999 9999999999974 55544

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.73  E-value=1.6e-18  Score=122.11  Aligned_cols=57  Identities=28%  Similarity=0.627  Sum_probs=53.9

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCC
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVA   89 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~   89 (254)
                      .|.+++++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|+|.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            467889999999999999999999987899999999999999999999999999875

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.72  E-value=2.6e-18  Score=117.65  Aligned_cols=52  Identities=56%  Similarity=1.193  Sum_probs=49.5

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS   87 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~   87 (254)
                      +++|+||+|||++|+++|.+||..+|..||+.|++||++||+.||.++|+|.
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            4689999999999999999999878999999999999999999999999985

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.71  E-value=3.6e-18  Score=123.63  Aligned_cols=64  Identities=27%  Similarity=0.377  Sum_probs=58.9

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc--cCChhhhhhhccccCCCCCCCCCCC
Q 025351           31 THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIK--GRSGKSCRLRWCNQLSPSVAHRPFS   94 (254)
Q Consensus        31 ~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~--~Rs~~qcr~Rw~~~L~p~~~~~~WT   94 (254)
                      ..++.+.+++||+|||++|+.+|++||..+|..||..|+  +||+.||+.||.++|+|.+.++..+
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~~~   68 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSDSE   68 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCCCC
Confidence            345677899999999999999999999889999999999  9999999999999999999988764

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=1.7e-17  Score=120.40  Aligned_cols=64  Identities=23%  Similarity=0.397  Sum_probs=59.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCCh
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQP  148 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~  148 (254)
                      .|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.+++.+|+.++
T Consensus         4 ~~~~k~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p~i~~~~wt~eE   68 (70)
T 2dim_A            4 GSSGKGGVWRNTEDEILKAAVMKYGKNQWSRIASLLHRKSAKQCKARWYEWLDPSIKKTEWSGPS   68 (70)
T ss_dssp             CSCSTTCCCCHHHHHHHHHHHHHTCSSCHHHHHHHSTTCCHHHHHHHHHHTSCSSSCCCCSCCSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHhcCCCHHHHHHHHHHHcCCcccCCCCChHh
Confidence            4678999999999999999999999 799999999999999999999999999999988765543

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=1.3e-17  Score=119.62  Aligned_cols=60  Identities=22%  Similarity=0.363  Sum_probs=56.8

Q ss_pred             cCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCC
Q 025351           83 QLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHP  143 (254)
Q Consensus        83 ~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~  143 (254)
                      +|+|.+++++||+|||++|+++++.||++|..||. |+|||+.||++||+++|++.+++..
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPTQWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTTCHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCCCHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            79999999999999999999999999999999999 8899999999999999999877654

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.70  E-value=4.7e-18  Score=116.31  Aligned_cols=52  Identities=37%  Similarity=0.786  Sum_probs=48.3

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS   87 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~   87 (254)
                      +++++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|+|.
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   52 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   52 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCcC
Confidence            3689999999999999999999878999999999999999999999999984

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.68  E-value=4.2e-17  Score=119.01  Aligned_cols=58  Identities=24%  Similarity=0.338  Sum_probs=55.6

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351           84 LSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTRE  141 (254)
Q Consensus        84 L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~  141 (254)
                      ++|.+++++||+|||++|++++.+||++|..||.+|+|||+.||++||+.++++..+.
T Consensus         3 ~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~   60 (72)
T 2cu7_A            3 SGSSGYSVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKC   60 (72)
T ss_dssp             CCCSSCCCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999999999999999999998766

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=99.68  E-value=4.5e-17  Score=114.63  Aligned_cols=56  Identities=27%  Similarity=0.491  Sum_probs=52.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTR  140 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~  140 (254)
                      +|.+++++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|++.++
T Consensus         3 ~p~~~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~i~   59 (60)
T 2d9a_A            3 SGSSGKVKWTHEEDEQLRALVRQFGQQDWKFLASHFPNRTDQQCQYRWLRVLSGPSS   59 (60)
T ss_dssp             SCCCCCSCCCHHHHHHHHHHHHHTCTTCHHHHHHHCSSSCHHHHHHHHHHTSCSSSC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHccCCCHHHHHHHHHHHcCCccC
Confidence            5788999999999999999999999 6999999999999999999999999998754

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=99.65  E-value=1.4e-16  Score=108.95  Aligned_cols=50  Identities=26%  Similarity=0.558  Sum_probs=46.5

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           88 VAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus         1 i~~~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1guu_A            1 LGKTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   51 (52)
T ss_dssp             --CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCCHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46889999999999999999998 899999999999999999999999976

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=99.65  E-value=3.3e-16  Score=125.74  Aligned_cols=77  Identities=22%  Similarity=0.492  Sum_probs=70.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD  163 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~  163 (254)
                      .+..++++||+|||++|+++|..||.+|..||..|+|||+.||+.||+++|.+...+.+  |+++|+..|++++..+|.
T Consensus         6 ~~~~kk~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~--WT~eEd~~L~~~v~~~G~   82 (126)
T 3osg_A            6 LKAAKKQKFTPEEDEMLKRAVAQHGSDWKMIAATFPNRNARQCRDRWKNYLAPSISHTP--WTAEEDALLVQKIQEYGR   82 (126)
T ss_dssp             -CBCSSCCCCHHHHHHHHHHHHHHTTCHHHHHHTCTTCCHHHHHHHHHHHTSTTSCCSC--CCHHHHHHHHHHHHHHCS
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHhhhccccccccc--CCHHHHHHHHHHHHHHCc
Confidence            45678999999999999999999999999999999999999999999999999887764  999999999999998874

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=99.64  E-value=3.9e-16  Score=121.10  Aligned_cols=74  Identities=19%  Similarity=0.526  Sum_probs=68.3

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351           88 VAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD  163 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~  163 (254)
                      +.+++||+|||++|+++|..||. +|..||..|+|||+.||++||.++|.+...+.+  |+++|+..|++++..+|.
T Consensus         2 l~k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p~~~~~~--Wt~eEd~~L~~~~~~~G~   76 (105)
T 1gv2_A            2 LIKGPWTKEEDQRVIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKTS--WTEEEDRIIYQAHKRLGN   76 (105)
T ss_dssp             CCCSCCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTCCCCCCCC--CCHHHHHHHHHHHHHHSS
T ss_pred             CCCCCCCHHHHHHHHHHHHHhCCCcHHHHhhhhcCCCHHHHHHHHHhccCCcccccC--CCHHHHHHHHHHHHHhCC
Confidence            67899999999999999999996 799999999999999999999999999887664  889999999999988763

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.64  E-value=4.9e-17  Score=116.37  Aligned_cols=54  Identities=26%  Similarity=0.482  Sum_probs=48.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccc--cCChhhhhhhccccCCCCCC
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIK--GRSGKSCRLRWCNQLSPSVA   89 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~--~Rs~~qcr~Rw~~~L~p~~~   89 (254)
                      .+|++||+|||++|+++|++||..+|..||+.++  +||+.||++||.+++.|.++
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~glN   64 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   64 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCCC
Confidence            3578999999999999999999889999999865  99999999999999988764

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.64  E-value=8.2e-17  Score=113.55  Aligned_cols=54  Identities=19%  Similarity=0.353  Sum_probs=50.5

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351           34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS   87 (254)
Q Consensus        34 p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~   87 (254)
                      +.+.+++||+|||++|+++|.+||..+|..||+.|++||+.||+.||.++|.+.
T Consensus         4 ~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            4 GSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            467789999999999999999999889999999999999999999999998765

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=99.64  E-value=2.6e-16  Score=107.65  Aligned_cols=50  Identities=26%  Similarity=0.688  Sum_probs=47.3

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           88 VAHRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      +++++||+|||++|+++|.+||. +|..||..|+|||+.||++||+++|++
T Consensus         1 l~k~~Wt~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   51 (52)
T 1gvd_A            1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCcChHHHHHHHcCCCCHHHHHHHHHHHcCc
Confidence            46899999999999999999997 699999999999999999999999976

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=99.62  E-value=6.9e-16  Score=111.56  Aligned_cols=61  Identities=16%  Similarity=0.325  Sum_probs=55.9

Q ss_pred             cCCCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHhhcccccCCC
Q 025351           83 QLSPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLP--GRTDNAVKNHWNSTLKRRTREHP  143 (254)
Q Consensus        83 ~L~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~~~~~~  143 (254)
                      ...+...+++||+|||++|+++|.+|| ++|..||..|+  |||+.||++||+++|++.+.+..
T Consensus         3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p~i~k~~   66 (69)
T 1ity_A            3 EKHRARKRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLKLISSD   66 (69)
T ss_dssp             CTTCSSSCCCCCHHHHHHHHHHHHHHCSSCHHHHHHHSCCSSCCHHHHHHHHHHHHHTSCCCCC
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHCCCcHHHHHHHcCcCCCCHHHHHHHHHHHcCCCCCCCC
Confidence            346778899999999999999999999 69999999999  99999999999999999887653

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=99.62  E-value=4.9e-16  Score=109.54  Aligned_cols=54  Identities=19%  Similarity=0.345  Sum_probs=50.5

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      .+.+.+++||+|||++|+++|..|| ++|..||.+|+|||+.||++||+++|...
T Consensus         3 s~~~~~~~WT~eED~~L~~~v~~~G~~~W~~Ia~~~~~Rt~~qcr~r~~~~l~~~   57 (60)
T 1x41_A            3 SGSSGDPSWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKYFSGP   57 (60)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHHTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCcCcHHHHHHHhCCCCHHHHHHHHHHHccCC
Confidence            4678899999999999999999999 79999999999999999999999998764

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.61  E-value=5.7e-16  Score=106.45  Aligned_cols=50  Identities=20%  Similarity=0.441  Sum_probs=46.4

Q ss_pred             CCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHhhccc
Q 025351           89 AHRPFSPAEDDTILAAHARFG-NRWATIARLLP--GRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~  138 (254)
                      ++++||+|||++|+++|..|| ++|..||..|+  |||+.||++||+++++.+
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k~k   53 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKKLK   53 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHTC-
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHccC
Confidence            478999999999999999999 69999999999  999999999999998753

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=99.61  E-value=1.2e-15  Score=119.01  Aligned_cols=72  Identities=22%  Similarity=0.446  Sum_probs=66.6

Q ss_pred             CCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351           90 HRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD  163 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~  163 (254)
                      +++||+|||++|+++|..||. +|..||..|+|||+.||+.||.++|.+.+.+.+  |+++|+..|++++..+|.
T Consensus         1 K~~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~p~i~~~~--WT~eEd~~L~~~~~~~G~   73 (107)
T 2k9n_A            1 KVKFTEEEDLKLQQLVMRYGAKDWIRISQLMITRNPRQCRERWNNYINPALRTDP--WSPEEDMLLDQKYAEYGP   73 (107)
T ss_dssp             CCSSCHHHHHHHHHHHHHHCSSCHHHHHHHTTTSCHHHHHHHHHHHSSSCCTTCC--CCHHHHHHHHHHHHHTCS
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHhhhcCCCCHHHHHHHHHHHHcccccccc--cCHHHHHHHHHHHHHhCc
Confidence            579999999999999999996 899999999999999999999999999887654  889999999999998874

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=6.5e-17  Score=115.96  Aligned_cols=60  Identities=23%  Similarity=0.388  Sum_probs=54.8

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCC
Q 025351           31 THKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRP   92 (254)
Q Consensus        31 ~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~   92 (254)
                      .++|.+++++||+|||++|+++|+.||. +|..||+ +++||+.||+.||.++|+|.++++.
T Consensus         2 ~L~P~~~k~~WT~eED~~L~~~~~~~g~-~W~~Ia~-~~gRt~~qcr~Rw~~~l~~~~~~~~   61 (66)
T 2din_A            2 SSGSSGKKTEWSREEEEKLLHLAKLMPT-QWRTIAP-IIGRTAAQCLEHYEFLLDKAAQRDS   61 (66)
T ss_dssp             CCSSSSSCCCCCHHHHHHHHHHHHHCTT-CHHHHHH-HHSSCHHHHHHHHHHHHHHHHHSSS
T ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHcCC-CHHHHhc-ccCcCHHHHHHHHHHHhChHhcCCC
Confidence            3678999999999999999999999996 7999999 8899999999999999998776553

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=99.60  E-value=2.2e-16  Score=108.52  Aligned_cols=49  Identities=33%  Similarity=0.492  Sum_probs=46.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccc--cCChhhhhhhccccCC
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIK--GRSGKSCRLRWCNQLS   85 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~--~Rs~~qcr~Rw~~~L~   85 (254)
                      ++++||+|||++|+.+|.+||..+|..||..|+  +||+.||++||.+++.
T Consensus         1 kr~~WT~eEd~~L~~~v~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            478999999999999999999889999999999  9999999999998764

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=99.60  E-value=2e-15  Score=121.77  Aligned_cols=72  Identities=25%  Similarity=0.507  Sum_probs=67.3

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHHHhhcCCC
Q 025351           90 HRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMDSVDNGGD  163 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~~~~~~~~  163 (254)
                      +++||+|||++|+++|..|| ++|..||..|+|||+.||+.||.++|.+...+.+  |+++|+..|++++..+|.
T Consensus         2 Kg~Wt~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p~~~~~~--Wt~eEd~~L~~~~~~~G~   74 (131)
T 3zqc_A            2 KGPFTEAEDDLIREYVKENGPQNWPRITSFLPNRSPKQCRERWFNHLDPAVVKHA--WTPEEDETIFRNYLKLGS   74 (131)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCSCCGGGGTTSCTTSCHHHHHHHHHHHTSTTCCCSC--CCHHHHHHHHHHHHHSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCCHHHHHHHHCCCCHHHHHHHHhhccCccccCCC--CCHHHHHHHHHHHHHHCc
Confidence            68999999999999999999 6899999999999999999999999999887764  899999999999999874

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.58  E-value=5e-16  Score=108.88  Aligned_cols=50  Identities=26%  Similarity=0.581  Sum_probs=46.4

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccc-cCChhhhhhhccccC
Q 025351           35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQL   84 (254)
Q Consensus        35 ~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-~Rs~~qcr~Rw~~~L   84 (254)
                      .+.+++||+|||++|+++|++||..+|..||+.|+ +||+.||+.||.+++
T Consensus         6 p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            6 SGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            35578999999999999999999889999999999 999999999999865

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=3.2e-16  Score=114.98  Aligned_cols=60  Identities=20%  Similarity=0.325  Sum_probs=55.2

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCC-----CCccccccccccCChhhhhhhccccCCCCCCCCC
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGP-----RNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRP   92 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~-----~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~   92 (254)
                      +|...+++||+|||++|+++|.+||.     .+|..||+.|++||..||+.||+++|.+.++.+-
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g~   67 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAGI   67 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTCS
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCC
Confidence            57888999999999999999999996     6899999999999999999999999988777654

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=99.57  E-value=2.4e-15  Score=107.52  Aligned_cols=52  Identities=21%  Similarity=0.512  Sum_probs=47.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC--CCCHHHHHHHHHHhhcccc
Q 025351           88 VAHRPFSPAEDDTILAAHARFG-NRWATIARLLP--GRTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~--gRT~~q~k~Rw~~~lk~~~  139 (254)
                      .++++||+|||++|+++|.+|| ++|..||+.++  |||+.||++||++++|+.+
T Consensus         9 ~kk~~WT~eED~~L~~~V~~~G~~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl~k~gl   63 (64)
T 3sjm_A            9 TKKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   63 (64)
T ss_dssp             -CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCCHHHHHHHHHHHHccCCCchHHHHhhcCCCCCCHHHHHHHHHHHhccCC
Confidence            4678999999999999999999 58999999865  9999999999999998765

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.9e-15  Score=110.85  Aligned_cols=58  Identities=21%  Similarity=0.298  Sum_probs=53.6

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcC------CChhhhhhcCCCCCHHHHHHHHHHhhcccccCC
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFG------NRWATIARLLPGRTDNAVKNHWNSTLKRRTREH  142 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G------~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~  142 (254)
                      +|.+.+++||+|||++|++++..||      ++|..||.+|+|||+.||++||+++|++..+..
T Consensus         3 ~p~~~~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~~~k~g   66 (75)
T 2yum_A            3 SGSSGNQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIKLTKAG   66 (75)
T ss_dssp             CCCCCSSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGGGSTTC
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcC
Confidence            5788999999999999999999999      789999999999999999999999998876554

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.55  E-value=6.2e-16  Score=112.76  Aligned_cols=62  Identities=16%  Similarity=0.305  Sum_probs=54.6

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChH
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPA   96 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~E   96 (254)
                      .|.+++++||+|||++|+++|.+||. +|..||+.|++||..||+.||.++|.+.++. .++++
T Consensus         4 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~Ia~~~~~Rt~~q~k~r~~~~l~~~~~~-g~~~~   65 (72)
T 2cu7_A            4 GSSGYSVKWTIEEKELFEQGLAKFGR-RWTKISKLIGSRTVLQVKSYARQYFKNKVKC-GLDKE   65 (72)
T ss_dssp             CCSSCCCCCCHHHHHHHHHHHHHTCS-CHHHHHHHHSSSCHHHHHHHHHHHHHHHSCS-CTTCC
T ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHCc-CHHHHHHHcCCCCHHHHHHHHHHHHHHHHhc-CCCCC
Confidence            56788999999999999999999996 8999999999999999999999998876665 44433

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=99.55  E-value=6.1e-15  Score=103.30  Aligned_cols=50  Identities=24%  Similarity=0.428  Sum_probs=46.3

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCC-CCCHHHHHHHHHHhh
Q 025351           86 PSVAHRPFSPAEDDTILAAHARFG-NRWATIARLLP-GRTDNAVKNHWNSTL  135 (254)
Q Consensus        86 p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~-gRT~~q~k~Rw~~~l  135 (254)
                      ..+.+++||+|||++|+++|.+|| ++|..||++|+ |||+.||++||++++
T Consensus         5 ~p~~~~~WT~eED~~L~~~v~~~G~~~W~~IA~~~~~~Rt~~qcr~r~~~~~   56 (58)
T 2elk_A            5 SSGFDENWGADEELLLIDACETLGLGNWADIADYVGNARTKEECRDHYLKTY   56 (58)
T ss_dssp             CCSCCCCCCHHHHHHHHHHHHHTTTTCHHHHHHHHCSSCCHHHHHHHHHHHT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHCcCCHHHHHHHHCCCCCHHHHHHHHHHHc
Confidence            456688999999999999999999 89999999999 999999999998765

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.29  E-value=6.5e-16  Score=117.30  Aligned_cols=58  Identities=21%  Similarity=0.311  Sum_probs=54.1

Q ss_pred             ccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccc
Q 025351           82 NQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus        82 ~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~  139 (254)
                      ..++|.+.+++||+|||++|+++|..||++|..||.+|+|||++||++||++++++..
T Consensus         8 ~~~~p~~~~~~WT~eEd~~l~~~~~~~G~~W~~IA~~l~gRt~~q~k~r~~~~lrk~~   65 (89)
T 2ltp_A            8 SSGRENLYFQGWTEEEMGTAKKGLLEHGRNWSAIARMVGSKTVSQCKNFYFNYKKRQN   65 (89)
Confidence            3567899999999999999999999999999999999999999999999999988754

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.51  E-value=1e-14  Score=109.45  Aligned_cols=69  Identities=26%  Similarity=0.392  Sum_probs=61.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccc----cccCChhhhhhhccccC-----CCCCCCC-CCChHHHHHHHHHHHh
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRY----IKGRSGKSCRLRWCNQL-----SPSVAHR-PFSPAEDDTILAAHAR  107 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~----l~~Rs~~qcr~Rw~~~L-----~p~~~~~-~WT~EED~~Ll~~v~~  107 (254)
                      ++||+|||++|+.+|++||.++|..|++.    |++||..+|++||++++     +|.++++ +..++....++.+++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~~~~~p~~~~~~~~p~~~~~rv~~~~a~   79 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQDLLDRVLAAHAY   79 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHhccCCcccccCCCCCHHHHHHHHHHHHH
Confidence            47999999999999999998899999985    89999999999999987     6877666 7777888889998864

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.50  E-value=1.5e-14  Score=107.59  Aligned_cols=54  Identities=22%  Similarity=0.453  Sum_probs=49.2

Q ss_pred             cccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351           29 RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        29 ~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      .........+++||+|||++|+++|++|| .+|..||+.|++||..||+.||.++
T Consensus         9 ~~~~~~~~~~~~WT~eEd~~Ll~~v~~~G-~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A            9 LAKSKGASAGREWTEQETLLLLEALEMYK-DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CCCCCSSCCSCCCCHHHHHHHHHHHHHSS-SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cCCccccccCCCcCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            33456677789999999999999999999 7899999999999999999999987

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=99.49  E-value=1.1e-14  Score=106.66  Aligned_cols=59  Identities=22%  Similarity=0.276  Sum_probs=47.7

Q ss_pred             ccccCCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCC
Q 025351           28 RRATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVA   89 (254)
Q Consensus        28 r~~~~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~   89 (254)
                      ..+..+|++++|+||+|||++|+++|.+||.+ |..||+.| |||+.||+.||.. |.....
T Consensus        13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~k-W~~IA~~l-gRt~~q~knRw~~-L~~~~~   71 (73)
T 2llk_A           13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGND-WATIGAAL-GRSASSVKDRCRL-MKDTCN   71 (73)
T ss_dssp             ------CCCCCCSSCHHHHHHHHHHHHHHSSC-HHHHHHHH-TSCHHHHHHHHHH-CSCCCS
T ss_pred             eeeecCCCCCCCCCCHHHHHHHHHHHHHHCCC-HHHHHHHh-CCCHHHHHHHHHH-HHHHcc
Confidence            35677999999999999999999999999965 99999999 9999999999974 544433

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.49  E-value=1.4e-14  Score=113.09  Aligned_cols=79  Identities=24%  Similarity=0.376  Sum_probs=68.3

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCcccccccc----ccCChhhhhhhccccC-----CCCCCCCCCChHHHHH-H
Q 025351           32 HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYI----KGRSGKSCRLRWCNQL-----SPSVAHRPFSPAEDDT-I  101 (254)
Q Consensus        32 ~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l----~~Rs~~qcr~Rw~~~L-----~p~~~~~~WT~EED~~-L  101 (254)
                      ....+++++||+|||++|+.+|++||..+|..|++.+    ++||..+|++||.+++     +|.++++.-+|+|--. +
T Consensus         7 ~~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~~~~p~~~rg~~~P~~~l~rv   86 (105)
T 2aje_A            7 DPQRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTAKISPQQRRGEPVPQELLNRV   86 (105)
T ss_dssp             --CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTTTCCTTTTTCCSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCcccccCCCCCHHHHHHH
Confidence            3456778999999999999999999988999999965    8999999999999998     7999999888888665 8


Q ss_pred             HHHHHhcCC
Q 025351          102 LAAHARFGN  110 (254)
Q Consensus       102 l~~v~~~G~  110 (254)
                      +++++.+|+
T Consensus        87 ~~~~~~~~~   95 (105)
T 2aje_A           87 LNAHGYWTQ   95 (105)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888877664

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=99.46  E-value=4.8e-14  Score=112.59  Aligned_cols=78  Identities=22%  Similarity=0.371  Sum_probs=65.8

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHhhc-----ccccCCCCCCChhHHHH
Q 025351           84 LSPSVAHRPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLK-----RRTREHPVQMQPHQQQQ  153 (254)
Q Consensus        84 L~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk-----~~~~~~~~~~~~~e~~~  153 (254)
                      +.+...+++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++     +..++ ++.+.+++...
T Consensus        11 ~~~rr~r~~WT~EEd~~L~~gV~k~G~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk~~~~~p~~kr-g~~~p~e~~~r   89 (121)
T 2juh_A           11 LSQRRIRRPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR-GEPVPQDLLDR   89 (121)
T ss_dssp             CCCCCSSCCCCHHHHHHHHHHHHHHGGGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHHHHHTCSTTCC-CSCCCHHHHHH
T ss_pred             ccCCCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHhccccCCCCHHHHHHHHHHHHhhhccCCcccC-CCCCCHHHHHH
Confidence            556788999999999999999999997 99999997    489999999999999998     55444 56777777777


Q ss_pred             HHHHhhcCC
Q 025351          154 LMDSVDNGG  162 (254)
Q Consensus       154 L~~~~~~~~  162 (254)
                      ++.+....+
T Consensus        90 v~~~h~~~g   98 (121)
T 2juh_A           90 VLAAHAYWS   98 (121)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHc
Confidence            777666544

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.45  E-value=8e-14  Score=102.13  Aligned_cols=52  Identities=15%  Similarity=0.384  Sum_probs=47.7

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           86 PSVAHRPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        86 p~~~~~~WT~EED~~Ll~~v~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      +...+++||++||.+|+++++.||    ++|.+||.+|||||..||++||+.+++.
T Consensus        14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~d   69 (73)
T 2cqr_A           14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVSG   69 (73)
T ss_dssp             TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHSS
T ss_pred             cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            456788999999999999999999    6899999999999999999999887754

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.40  E-value=6.3e-14  Score=102.71  Aligned_cols=55  Identities=20%  Similarity=0.540  Sum_probs=49.2

Q ss_pred             cCCCCCCcCCCCHHHHHHHHHHHHHhC---CCCccccccccccCChhhhhhhccccCC
Q 025351           31 THKPERIKGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        31 ~~~p~~~kg~WT~eED~~L~~lV~~~g---~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      ..++...+++||++||++|+.+|.+||   ..+|.+||+.|||||..||+.||.+++.
T Consensus        11 ~~~~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           11 KERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             CCTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            455677899999999999999999999   3579999999999999999999987654

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=99.39  E-value=1.7e-13  Score=101.83  Aligned_cols=48  Identities=19%  Similarity=0.329  Sum_probs=44.7

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHh
Q 025351           87 SVAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNST  134 (254)
Q Consensus        87 ~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~  134 (254)
                      ...+++||+|||.+|++++.+||++|.+||.+|++||+.||++||+++
T Consensus        15 ~~~~~~WT~eEd~~Ll~~v~~~G~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           15 ASAGREWTEQETLLLLEALEMYKDDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             SCCSCCCCHHHHHHHHHHHHHSSSCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccCCCcCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999999999655

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=99.38  E-value=1.2e-12  Score=98.09  Aligned_cols=47  Identities=30%  Similarity=0.580  Sum_probs=44.0

Q ss_pred             CCCChHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHhhcc
Q 025351           91 RPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk~  137 (254)
                      ++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++.
T Consensus         1 r~WT~eEd~~L~~gv~k~G~g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~   52 (83)
T 2ckx_A            1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCCCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence            48999999999999999997 99999995    8999999999999999963

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=99.06  E-value=5.5e-14  Score=106.62  Aligned_cols=52  Identities=21%  Similarity=0.362  Sum_probs=48.3

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCC
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      .|.+.+|+||+|||++|+.+|.+||. +|..||..|++||..||+.||.++|.
T Consensus        11 ~p~~~~~~WT~eEd~~l~~~~~~~G~-~W~~IA~~l~gRt~~q~k~r~~~~lr   62 (89)
T 2ltp_A           11 RENLYFQGWTEEEMGTAKKGLLEHGR-NWSAIARMVGSKTVSQCKNFYFNYKK   62 (89)
Confidence            45678899999999999999999996 79999999999999999999998875

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=99.35  E-value=1.2e-12  Score=114.97  Aligned_cols=55  Identities=25%  Similarity=0.482  Sum_probs=49.0

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcCCC------hhhhhhcCCCCCHHHHHHHHHHhhccccc
Q 025351           86 PSVAHRPFSPAEDDTILAAHARFGNR------WATIARLLPGRTDNAVKNHWNSTLKRRTR  140 (254)
Q Consensus        86 p~~~~~~WT~EED~~Ll~~v~~~G~~------W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~  140 (254)
                      +.+.+++||+|||+.|+++|.+||++      |..||++|+|||++|||+||+.+|++++.
T Consensus         4 ~~~~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~ln   64 (246)
T 1ign_A            4 PSHNKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLE   64 (246)
T ss_dssp             ----CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCC
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhhcc
Confidence            35788999999999999999999885      99999999999999999999999999875

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=99.35  E-value=1.1e-12  Score=92.75  Aligned_cols=51  Identities=16%  Similarity=0.386  Sum_probs=46.6

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCChhhhh---hcCCCCCHHHHHHHHHHhhccc
Q 025351           88 VAHRPFSPAEDDTILAAHARFGNRWATIA---RLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~~W~~IA---~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      -.+.+||+|||+.|++.|++||.+|.+|+   ..|++||..+|++||+++.|+.
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~   59 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRLISGP   59 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHHHTCS
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhHhHHHHHHhCCCccCcccchHHHHHHHHHhcc
Confidence            36789999999999999999999999999   5778999999999999888764

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=99.34  E-value=1.4e-12  Score=101.78  Aligned_cols=53  Identities=26%  Similarity=0.508  Sum_probs=48.2

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcCC-ChhhhhhcC----CCCCHHHHHHHHHHhhccc
Q 025351           86 PSVAHRPFSPAEDDTILAAHARFGN-RWATIARLL----PGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        86 p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l----~gRT~~q~k~Rw~~~lk~~  138 (254)
                      +...+++||+|||+.|+++|.+||. +|+.|++.+    +|||+.+||+||+++++..
T Consensus         9 ~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~~   66 (105)
T 2aje_A            9 QRRIRRPFSVAEVEALVQAVEKLGTGRWRDVKLCAFEDADHRTYVDLKDKWKTLVHTA   66 (105)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHHCSSSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhc
Confidence            4577899999999999999999997 999999965    8999999999999999743

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=99.32  E-value=2.2e-12  Score=103.08  Aligned_cols=77  Identities=19%  Similarity=0.363  Sum_probs=59.8

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHhhc-----ccccCCCCCCChhH-HHH
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLK-----RRTREHPVQMQPHQ-QQQ  153 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk-----~~~~~~~~~~~~~e-~~~  153 (254)
                      .....+++||+|||+.|+++|.+||. +|+.|++.    |+|||+.+||+||+++++     +..++  ..+.+++ ...
T Consensus        26 ~~rr~r~~WT~EEd~~L~~gV~k~G~g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~~~~~p~~kr--~~~~p~e~~~~  103 (122)
T 2roh_A           26 GQRRIRRPFTVAEVELLVEAVEHLGTGRWRDVKFRAFENVHHRTYVDLKDKWKTLVHTASIAPQQRR--GAPVPQELLDR  103 (122)
T ss_dssp             CCCCCCCCCCHHHHHHHHHHHHHHSSSCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHHHHSCTTTCC--CSSCCHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHCCCChHHHHHHhccccCCCCHHHHHHHHHHHHhhccCCccccC--CCCCCHHHHHH
Confidence            34557889999999999999999997 99999996    489999999999999995     44444  2344455 466


Q ss_pred             HHHHhhcCCC
Q 025351          154 LMDSVDNGGD  163 (254)
Q Consensus       154 L~~~~~~~~~  163 (254)
                      ++.+....|+
T Consensus       104 v~~~h~~~g~  113 (122)
T 2roh_A          104 VLAAQAYWSV  113 (122)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHhh
Confidence            6666555543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.23  E-value=7e-12  Score=95.84  Aligned_cols=49  Identities=35%  Similarity=0.644  Sum_probs=44.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           89 AHRPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      ..++||+|||.+|+++++.||    ++|.+||..|||||..+|++||+.+++.
T Consensus         7 ~~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            7 SGRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVED   59 (93)
T ss_dssp             -CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            467999999999999999996    6799999999999999999999887654

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=99.10  E-value=1.6e-11  Score=93.80  Aligned_cols=47  Identities=26%  Similarity=0.635  Sum_probs=42.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCCccccccccccCChhhhhhhccccC
Q 025351           38 KGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWCNQL   84 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g---~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L   84 (254)
                      +++||+|||++|.+++.+|+   ...|..||+.|||||.+||+.||.+++
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vpGRT~~q~k~ry~~l~   57 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILV   57 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46799999999999999997   456999999999999999999998764

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.6e-10  Score=81.54  Aligned_cols=49  Identities=12%  Similarity=0.085  Sum_probs=44.7

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      ...+||+||+.++++++..||++|..||..|++||..+|+.+|....|.
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk~w~~Ia~~l~~rt~~~~v~~Yy~~Kk~   59 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPKNFGLIASYLERKSVPDCVLYYYLTKKN   59 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTTCHHHHHHHCTTSCHHHHHHHHHHHTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHcCCCCHHHHHHHHHHhcCC
Confidence            4569999999999999999999999999999999999999999765543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=98.97  E-value=2.6e-10  Score=80.51  Aligned_cols=49  Identities=22%  Similarity=0.341  Sum_probs=43.7

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccc---cccccCChhhhhhhccccCC
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLIS---RYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia---~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      .++.+||+|||+.|+++|++||. +|..|+   ..+++||..++++||.+...
T Consensus         6 ~~r~~WT~EE~~~L~~gV~k~G~-~W~~I~~~y~f~~~RT~VdLKdk~r~L~k   57 (62)
T 1x58_A            6 SGRKDFTKEEVNYLFHGVKTMGN-HWNSILWSFPFQKGRRAVDLAHKYHRLIS   57 (62)
T ss_dssp             CCSSSCCHHHHHHHHHHHHHHCS-CHHHHHHHSCCCTTCCHHHHHHHHHHHHT
T ss_pred             CCCCCCCHHHHHHHHHHHHHHhH-hHHHHHHhCCCccCcccchHHHHHHHHHh
Confidence            35688999999999999999996 899999   57799999999999987543

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.89  E-value=8.3e-10  Score=77.78  Aligned_cols=46  Identities=22%  Similarity=0.445  Sum_probs=42.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      ..++||+||++++.+++.+|| ++|..||..||+||..||..+|...
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~g-k~w~~Ia~~l~~rt~~~~v~~Yy~~   56 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHP-KNFGLIASYLERKSVPDCVLYYYLT   56 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHST-TCHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhC-CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            457899999999999999999 6899999999999999999998654

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.89  E-value=2.4e-09  Score=78.03  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=45.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC----CChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351           87 SVAHRPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        87 ~~~~~~WT~EED~~Ll~~v~~~G----~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      ....++||.|||.+|.++++.|+    ++|..||..| |||..+|++||+.+.+..
T Consensus         5 ~~~~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~d~   59 (72)
T 2cqq_A            5 SSGAPEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDSV   59 (72)
T ss_dssp             CCCCCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHSC
T ss_pred             CCCCCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHHhc
Confidence            45677999999999999999997    5799999998 999999999998776654

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=98.86  E-value=1.9e-09  Score=82.15  Aligned_cols=64  Identities=16%  Similarity=0.218  Sum_probs=55.9

Q ss_pred             hhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCChhhhhhcC-----CCCCHHHHHHHHHHhhcccccCC
Q 025351           75 SCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNRWATIARLL-----PGRTDNAVKNHWNSTLKRRTREH  142 (254)
Q Consensus        75 qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l-----~gRT~~q~k~Rw~~~lk~~~~~~  142 (254)
                      =+.++|.++|.+    .+||.||+..|++++.+||.+|..|+..+     ++||..+||+||..+.++.....
T Consensus        19 yt~eeY~~~L~~----~~WTkEETd~Lf~L~~~fdlRW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r   87 (93)
T 3hm5_A           19 YSEQEYQLYLHD----DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVR   87 (93)
T ss_dssp             CCHHHHHHHTCB----TTBCHHHHHHHHHHHHHTTTCHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             cCHHHHHHHcCC----CCCCHHHHHHHHHHHHHhCCCeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            467888888876    79999999999999999999999999988     58999999999988877655433

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.84  E-value=3.1e-09  Score=92.61  Aligned_cols=50  Identities=16%  Similarity=0.290  Sum_probs=45.8

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351           89 AHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      ...+||+||+.++++++..||++|..||+.+++||..||+++|+++.++.
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKDW~~IAk~VgTKT~~QcKnfY~~~kKRl  181 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRRF  181 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcCHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            45699999999999999999999999999999999999999998776653

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=98.75  E-value=4.9e-09  Score=100.53  Aligned_cols=47  Identities=17%  Similarity=0.318  Sum_probs=42.6

Q ss_pred             CCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           91 RPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      ..||+||-.++++++.+||.+|..||..+..||..||+++|.++.++
T Consensus       381 ~~WT~eE~~~f~~al~~yGkdw~~IA~~VgTKT~~Qvk~fy~~~kkr  427 (482)
T 2xag_B          381 ARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR  427 (482)
T ss_dssp             SCCCHHHHHHHHHHHHHHTTCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCHHHHHHHHHHHHHHCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999644333

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.68  E-value=3.8e-08  Score=71.80  Aligned_cols=53  Identities=11%  Similarity=0.282  Sum_probs=45.9

Q ss_pred             CCCCCChHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHhhcccccC
Q 025351           89 AHRPFSPAEDDTILAAHARFGN----RWATIARLLPGRTDNAVKNHWNSTLKRRTRE  141 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~  141 (254)
                      ....||.+|+.+|.++++.|+.    +|..||..++|||..+|+.||..+++.+...
T Consensus         7 ~~~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~~~s~   63 (73)
T 1wgx_A            7 GDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQ   63 (73)
T ss_dssp             SSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHhccccc
Confidence            3458999999999999999984    5999999999999999999998876654433

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.64  E-value=8.7e-09  Score=75.05  Aligned_cols=47  Identities=23%  Similarity=0.402  Sum_probs=41.3

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCCccccccccccCChhhhhhhccccCC
Q 025351           38 KGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g---~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      .+.||.|||++|.+++.+|+   +..|.+||..| |||..+|+.||..+..
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l-gRt~~eV~~~y~~L~~   57 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKD   57 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            45699999999999999997   34599999998 8999999999987543

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.62  E-value=3.7e-08  Score=69.02  Aligned_cols=47  Identities=23%  Similarity=0.424  Sum_probs=42.8

Q ss_pred             CCCCChHHHHHHHHHHHhc--------CCC-hhhhhh-cCCCCCHHHHHHHHHHhhc
Q 025351           90 HRPFSPAEDDTILAAHARF--------GNR-WATIAR-LLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~--------G~~-W~~IA~-~l~gRT~~q~k~Rw~~~lk  136 (254)
                      +.+||+|||..|++.|+++        |+. |..|++ .++++|-.++|+||...|+
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        654 999999 8999999999999988775

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=98.52  E-value=3.7e-08  Score=85.87  Aligned_cols=49  Identities=22%  Similarity=0.438  Sum_probs=45.0

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCC
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      ...++||+||++++++++.+|| ++|..||+.|++||..||+.+|.++..
T Consensus       131 k~s~~WTeEE~~lFleAl~kYG-KDW~~IAk~VgTKT~~QcKnfY~~~kK  179 (235)
T 2iw5_B          131 KCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYRR  179 (235)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTTT
T ss_pred             ccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            4568999999999999999999 689999999999999999999987653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=98.49  E-value=3.2e-08  Score=69.33  Aligned_cols=48  Identities=17%  Similarity=0.322  Sum_probs=43.1

Q ss_pred             cCCCCHHHHHHHHHHHHHh--------CCCCcccccc-ccccCChhhhhhhccccCC
Q 025351           38 KGPWSAEEDRILTRLVERY--------GPRNWSLISR-YIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~--------g~~nW~~Ia~-~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      |.+||+|||++|+..|.+|        |..-|..+++ .++.+|..+||+||.+.|.
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~HtwqSwRdRy~k~l~   58 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHHHHHHHHHHHcc
Confidence            5689999999999999999        4445999999 7999999999999998774

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.48  E-value=4.8e-08  Score=71.25  Aligned_cols=47  Identities=17%  Similarity=0.338  Sum_probs=42.4

Q ss_pred             CCCCHHHHHHHHHHHHHhCC---CCccccccccccCChhhhhhhccccCC
Q 025351           39 GPWSAEEDRILTRLVERYGP---RNWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~---~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      ..||.+|+++|.+++..|+.   ..|..||..|++||..+|+.||..++.
T Consensus         9 ~~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~gKT~eE~~~hY~~l~~   58 (73)
T 1wgx_A            9 KEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPR   58 (73)
T ss_dssp             SCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence            45999999999999999974   469999999999999999999987754

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=98.37  E-value=6.4e-07  Score=81.54  Aligned_cols=101  Identities=13%  Similarity=0.241  Sum_probs=81.1

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccc----c--C----------------------------
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN----Q--L----------------------------   84 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~----~--L----------------------------   84 (254)
                      +.||..+...++.++.+||..+|..||..|+++|...++..+.-    +  |                            
T Consensus       111 ~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~ry~ei~d~ek~~~~IE~gE~ki~r~~~~~~~l~  190 (304)
T 1ofc_X          111 TAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWERCTELQDIERIMGQIERGEGKIQRRLSIKKALD  190 (304)
T ss_dssp             TTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHHGGGCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHhHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56999999999999999999999999999999998766432110    0  0                            


Q ss_pred             ----------------CCCCCCCCCChHHHHHHHHHHHhcCC----Chhhhhh------------cCCCCCHHHHHHHHH
Q 025351           85 ----------------SPSVAHRPFSPAEDDTILAAHARFGN----RWATIAR------------LLPGRTDNAVKNHWN  132 (254)
Q Consensus        85 ----------------~p~~~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~------------~l~gRT~~q~k~Rw~  132 (254)
                                      .+..+...||++||..||-++.+||-    .|..|..            .|..||+.+|..|-+
T Consensus       191 ~Ki~~~~~P~~~L~i~y~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwf~kSRTp~el~rRc~  270 (304)
T 1ofc_X          191 QKMSRYRAPFHQLRLQYGNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  270 (304)
T ss_dssp             HHHHTCSSHHHHCCCCCTTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             HHHHHhcCcHHHhccccCCCCCCccCHHHHHHHHHHHHHhcCCCcchHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHHH
Confidence                            12234468999999999999999996    5999962            446899999999999


Q ss_pred             Hhhcccc
Q 025351          133 STLKRRT  139 (254)
Q Consensus       133 ~~lk~~~  139 (254)
                      .+++-..
T Consensus       271 tLi~~ie  277 (304)
T 1ofc_X          271 TLITLIE  277 (304)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=2.1e-06  Score=60.61  Aligned_cols=49  Identities=14%  Similarity=0.288  Sum_probs=44.5

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHHh
Q 025351           86 PSVAHRPFSPAEDDTILAAHARFGNRWATIAR-LLPGRTDNAVKNHWNST  134 (254)
Q Consensus        86 p~~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~-~l~gRT~~q~k~Rw~~~  134 (254)
                      |.+...+||+||-.+..+++..||.+|..|++ .|++||..+|...|...
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~w   54 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYGKNFFRIRKELLPNKETGELITFYYYW   54 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTCSCHHHHHHHSCTTSCHHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhCccHHHHHHHHcCCCcHHHHHHHHhcc
Confidence            56778899999999999999999999999999 59999999999888543

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.19  E-value=5.2e-07  Score=65.58  Aligned_cols=42  Identities=31%  Similarity=0.537  Sum_probs=38.4

Q ss_pred             CCCCChHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHH
Q 025351           90 HRPFSPAEDDTILAAHARFGN----RWATIARLLPGRTDNAVKNHW  131 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~----~W~~IA~~l~gRT~~q~k~Rw  131 (254)
                      ..+||.+|+++|..+++.|+.    +|.+||..+||||..+|+.+|
T Consensus        20 s~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY   65 (74)
T 4eef_G           20 GRPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHY   65 (74)
T ss_dssp             --CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGG
T ss_pred             CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHH
Confidence            458999999999999999985    699999999999999999998

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.16  E-value=1.8e-06  Score=65.03  Aligned_cols=45  Identities=18%  Similarity=0.326  Sum_probs=40.9

Q ss_pred             CCChHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351           92 PFSPAEDDTILAAHARFGN---RWATIARLLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        92 ~WT~EED~~Ll~~v~~~G~---~W~~IA~~l~gRT~~q~k~Rw~~~lk  136 (254)
                      -||.|||..||.++.+-|.   .|+.||+.|.+|+++||++||+.+++
T Consensus        35 lWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~Lm~   82 (95)
T 1ug2_A           35 LWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQ   82 (95)
T ss_dssp             SSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHH
T ss_pred             EeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence            7999999999999999986   69999999988999999999955443

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=98.09  E-value=1.1e-06  Score=63.87  Aligned_cols=43  Identities=19%  Similarity=0.492  Sum_probs=38.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CccccccccccCChhhhhhhcc
Q 025351           39 GPWSAEEDRILTRLVERYGPR---NWSLISRYIKGRSGKSCRLRWC   81 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~---nW~~Ia~~l~~Rs~~qcr~Rw~   81 (254)
                      ..||.+|+++|.+++.+|...   .|.+||..|||||..+|+.+|.
T Consensus        21 ~~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           21 RPWKFSENIAFEIALSFTNKDTPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             -CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            359999999999999999642   5999999999999999999985

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=97.35  E-value=4.7e-07  Score=64.72  Aligned_cols=45  Identities=22%  Similarity=0.355  Sum_probs=41.5

Q ss_pred             CCChHHHHHHHHHHHhcCC---ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           92 PFSPAEDDTILAAHARFGN---RWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        92 ~WT~EED~~Ll~~v~~~G~---~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      -||.|||..||..+.+-|.   .|+.||..| +|+++||++||..+++-
T Consensus        16 lWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~L   63 (70)
T 2lr8_A           16 LWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMKL   63 (70)
Confidence            6999999999999999997   699999999 99999999999777653

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.03  E-value=3.4e-06  Score=59.58  Aligned_cols=48  Identities=15%  Similarity=0.330  Sum_probs=41.8

Q ss_pred             CCCCcCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccCChhhhhhhccc
Q 025351           34 PERIKGPWSAEEDRILTRLVERYGPRNWSLISR-YIKGRSGKSCRLRWCN   82 (254)
Q Consensus        34 p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~-~l~~Rs~~qcr~Rw~~   82 (254)
                      |......||+||-++..+.+.+|| ++|..|++ .|++|+..+|...|..
T Consensus         5 p~~~~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   53 (63)
T 2yqk_A            5 SSGIEKCWTEDEVKRFVKGLRQYG-KNFFRIRKELLPNKETGELITFYYY   53 (63)
T ss_dssp             CCCCCCSCCHHHHHHHHHHHHHTC-SCHHHHHHHSCTTSCHHHHHHHHHH
T ss_pred             CCcCCCCcCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCcHHHHHHHHhc
Confidence            455567899999999999999999 58999999 6999999999877643

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.83  E-value=3.3e-05  Score=55.58  Aligned_cols=45  Identities=16%  Similarity=0.293  Sum_probs=41.2

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCChhhhhh-cCCCCCHHHHHHHHHH
Q 025351           89 AHRPFSPAEDDTILAAHARFGNRWATIAR-LLPGRTDNAVKNHWNS  133 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~~W~~IA~-~l~gRT~~q~k~Rw~~  133 (254)
                      ...+||+||-.+..+++..||.+|..|++ .|++||..+|...|..
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            34589999999999999999999999999 5999999999998863

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.79  E-value=3.5e-05  Score=58.59  Aligned_cols=45  Identities=18%  Similarity=0.159  Sum_probs=41.6

Q ss_pred             CCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHh
Q 025351           90 HRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNST  134 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~  134 (254)
                      ...||+||.++..+++..||.+|..||..|++||..+|...|...
T Consensus        43 ~~~WT~eE~~~F~~~~~~~gK~F~~Ia~~l~~Kt~~~cV~~YY~~   87 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLT   87 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHSTTCHHHHHHTCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCHHHHHHHcCCCCHHHHHHHHhcc
Confidence            458999999999999999999999999999999999999988543

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=97.77  E-value=1.2e-05  Score=77.18  Aligned_cols=48  Identities=23%  Similarity=0.475  Sum_probs=43.8

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351           35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        35 ~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      .....+||.+|-+++++++.+|| +||..||+.|++||..||+.+|.++
T Consensus       377 ~~~~~~WT~eE~~~f~~al~~yG-kdw~~IA~~VgTKT~~Qvk~fy~~~  424 (482)
T 2xag_B          377 QKCNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNY  424 (482)
T ss_dssp             CCCCSCCCHHHHHHHHHHHHHHT-TCHHHHHHHHSSCCHHHHHHHHHHT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHC-cCHHHHHHHhCCCCHHHHHHHHHHH
Confidence            35568999999999999999999 6899999999999999999998754

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=97.73  E-value=3.3e-05  Score=58.62  Aligned_cols=50  Identities=18%  Similarity=0.303  Sum_probs=44.9

Q ss_pred             CCCChHHHHHHHHHHHhcCCChhhhhhcCC-----CCCHHHHHHHHHHhhccccc
Q 025351           91 RPFSPAEDDTILAAHARFGNRWATIARLLP-----GRTDNAVKNHWNSTLKRRTR  140 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~-----gRT~~q~k~Rw~~~lk~~~~  140 (254)
                      ..||.||...|++++.+|+-+|..|+..+.     .||..++|.||..+.++...
T Consensus        31 ~~WT~eETd~LfdLc~~fdlRw~vI~DRy~~~~~~~RtvEdLK~RYY~V~~~l~~   85 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLRFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLAN   85 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTCHHHHHHHCCTTTSCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCCeEEEeeccccCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999998763     79999999999988777544

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=97.60  E-value=2.5e-05  Score=59.32  Aligned_cols=44  Identities=25%  Similarity=0.401  Sum_probs=40.5

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccc-----ccCChhhhhhhcccc
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYI-----KGRSGKSCRLRWCNQ   83 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l-----~~Rs~~qcr~Rw~~~   83 (254)
                      .+||.||+..|.+|+++|+.+ |..|+..+     ++||..+++.||..+
T Consensus        31 ~~WTkEETd~Lf~L~~~fdlR-W~vI~DRy~~~~~~~Rt~EdLK~RyY~v   79 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTC-HHHHHHHSCTTTSCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCC-eeeehhhhccCCCCCCCHHHHHHHHHHH
Confidence            789999999999999999976 99999998     589999999999764

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=97.59  E-value=3.3e-05  Score=55.59  Aligned_cols=44  Identities=23%  Similarity=0.409  Sum_probs=39.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCcccccc-ccccCChhhhhhhccc
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISR-YIKGRSGKSCRLRWCN   82 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~-~l~~Rs~~qcr~Rw~~   82 (254)
                      ...||++|-++....+.+|| +||..|++ .|++|+..+|...|..
T Consensus         8 ~~~WT~eE~~~Fe~~l~~yG-Kdf~~I~~~~v~~Kt~~~~v~fYY~   52 (70)
T 2crg_A            8 MEEWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   52 (70)
T ss_dssp             SCCCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhC-ccHHHHHHHHcCCCCHHHHHHHHHh
Confidence            35699999999999999999 58999999 6999999999877653

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.59  E-value=3e-05  Score=58.96  Aligned_cols=43  Identities=19%  Similarity=0.451  Sum_probs=39.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcc
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWC   81 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~   81 (254)
                      ...||+||-+++.+.+..|| ++|.+|+..|++||..+|...|.
T Consensus        43 ~~~WT~eE~~~F~~~~~~~g-K~F~~Ia~~l~~Kt~~~cV~~YY   85 (94)
T 4a69_C           43 MNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYY   85 (94)
T ss_dssp             TCCCCHHHHHHHHHHHHHST-TCHHHHHHTCTTCCHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcC-CCHHHHHHHcCCCCHHHHHHHHh
Confidence            46799999999999999999 68999999999999999987764

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=97.49  E-value=0.00017  Score=61.40  Aligned_cols=103  Identities=17%  Similarity=0.212  Sum_probs=69.0

Q ss_pred             CCCcCCCCHHHHHHHHHHHHHhC--CCCccccccc--cccCChhhhhhhccc----------------------------
Q 025351           35 ERIKGPWSAEEDRILTRLVERYG--PRNWSLISRY--IKGRSGKSCRLRWCN----------------------------   82 (254)
Q Consensus        35 ~~~kg~WT~eED~~L~~lV~~~g--~~nW~~Ia~~--l~~Rs~~qcr~Rw~~----------------------------   82 (254)
                      .-....||..|-..|++++.+||  ...|..|+..  |.+++...+...+..                            
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~c~~~~~~~~~~~~~~~~~~~~~~~   83 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDSSSGTERTGGRLGKVKG   83 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHHHHHHHC-----------------C
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccc
Confidence            33456799999999999999999  4569999854  567765332211000                            


Q ss_pred             -----------------------cC---------------C-----CCCCCCCCChHHHHHHHHHHHhcC-CChhhhhh-
Q 025351           83 -----------------------QL---------------S-----PSVAHRPFSPAEDDTILAAHARFG-NRWATIAR-  117 (254)
Q Consensus        83 -----------------------~L---------------~-----p~~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~-  117 (254)
                                             .|               -     +..-...||.+||..||..+.+|| .+|..|-. 
T Consensus        84 ~~~~~~~v~~nA~~il~R~~~l~~L~~~v~~~~~~~~~~~i~~~~~~~~~~~~W~~~~D~~LL~Gi~k~G~g~w~~Ir~D  163 (211)
T 4b4c_A           84 PTFRISGVQVNAKLVISHEEELIPLHKSIPSDPEERKQYTIPCHTKAAHFDIDWGKEDDSNLLIGIYEYGYGSWEMIKMD  163 (211)
T ss_dssp             CEEEETTEEEEHHHHHHHHHHHHHHHHHSCSSHHHHHTCCCCSCCCCCCSSSCCCHHHHHHHHHHHHHHCTTCHHHHHHC
T ss_pred             hhhhhcccchhHHHHHHhHHHHHHHHHHHHhchhhHHHcCcCCCCCCCCCCCCccHHHHHHHHHHHHHHCcCcHHHHHhC
Confidence                                   00               0     111123699999999999999999 78999955 


Q ss_pred             -c--C--------CC--CCHHHHHHHHHHhhcc
Q 025351          118 -L--L--------PG--RTDNAVKNHWNSTLKR  137 (254)
Q Consensus       118 -~--l--------~g--RT~~q~k~Rw~~~lk~  137 (254)
                       .  |        ..  +++..|..|-..+|+-
T Consensus       164 ~~l~~~~k~~~~~~~k~p~a~~L~rR~~~Ll~~  196 (211)
T 4b4c_A          164 PDLSLTHKILPDDPDKKPQAKQLQTRADYLIKL  196 (211)
T ss_dssp             SSSSCTTTSSCSSTTSSCCHHHHHHHHHHHHHH
T ss_pred             hhcCccccccccccccCCChHHHHHHHHHHHHH
Confidence             1  1        12  4566789998777664

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=97.45  E-value=0.00025  Score=66.08  Aligned_cols=102  Identities=23%  Similarity=0.362  Sum_probs=79.3

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccc-cCChhhhhhhccccC---------------------------------
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYIK-GRSGKSCRLRWCNQL---------------------------------   84 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-~Rs~~qcr~Rw~~~L---------------------------------   84 (254)
                      +.||.-+=..++.++.+||..+-..||..|. +++...++. |.+.+                                 
T Consensus       124 ~~WnrrDF~~FI~a~~kyGR~d~~~IA~ev~~~Kt~eEV~~-Y~~vFw~Ry~Ei~d~erii~~IEkgE~ki~r~~~~~~~  202 (374)
T 2y9y_A          124 TNWNKLEFRKFITVSGKYGRNSIQAIARELAPGKTLEEVRA-YAKAFWSNIERIEDYEKYLKIIENEEEKIKRVKMQQEA  202 (374)
T ss_dssp             CCSCHHHHHHHHHHHHHHCTTCHHHHHSSCCCSSSHHHHHH-HHHHHHHTCSSCSCCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHhCHhHHHHHHHHHccCCCHHHHHH-HHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4699999999999999999989999999997 888766552 21111                                 


Q ss_pred             ---------C----------CC-CCCCCCChHHHHHHHHHHHhcCC----Chhhhhhc------------CCCCCHHHHH
Q 025351           85 ---------S----------PS-VAHRPFSPAEDDTILAAHARFGN----RWATIARL------------LPGRTDNAVK  128 (254)
Q Consensus        85 ---------~----------p~-~~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~~------------l~gRT~~q~k  128 (254)
                               +          +. .+...||++||..||-++.+||-    .|..|-..            |..||+..|.
T Consensus       203 L~~Ki~~y~~P~~~L~i~y~~~~~k~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~  282 (374)
T 2y9y_A          203 LRRKLSEYKNPFFDLKLKHPPSSNNKRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELA  282 (374)
T ss_dssp             HHHHHTTCSSHHHHCCCSSCCCCSSCCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHH
T ss_pred             HHHHHHHccCCHHHceeccCCCCCCCCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHH
Confidence                     1          11 13458999999999999999984    59999432            4679999999


Q ss_pred             HHHHHhhcccccC
Q 025351          129 NHWNSTLKRRTRE  141 (254)
Q Consensus       129 ~Rw~~~lk~~~~~  141 (254)
                      .|.+.+++-..+.
T Consensus       283 rRc~tLi~~IeKE  295 (374)
T 2y9y_A          283 RRGNTLLQCLEKE  295 (374)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH
Confidence            9998888765444

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=97.12  E-value=0.00026  Score=52.39  Aligned_cols=48  Identities=15%  Similarity=0.409  Sum_probs=39.3

Q ss_pred             CCCCChHHHHHHHHHHHhcCC----------ChhhhhhcCC----CCCHHHHHHHHHHhhcc
Q 025351           90 HRPFSPAEDDTILAAHARFGN----------RWATIARLLP----GRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~----------~W~~IA~~l~----gRT~~q~k~Rw~~~lk~  137 (254)
                      ...||.+|...||+++.++..          .|..||..|.    .||+.||+++|.++.+.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~k~   65 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLLKE   65 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence            458999999999999976321          4999999762    69999999999777665

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=96.09  E-value=9.7e-05  Score=52.76  Aligned_cols=46  Identities=13%  Similarity=0.398  Sum_probs=40.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC--CccccccccccCChhhhhhhccccCC
Q 025351           39 GPWSAEEDRILTRLVERYGPR--NWSLISRYIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~--nW~~Ia~~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      -.||.|||..|+..+++-|..  -|..||+.| +|++.|+..||...+.
T Consensus        15 vlWTReeDR~IL~~cq~~G~s~~tfa~iA~~L-nks~~QV~~RF~~Lm~   62 (70)
T 2lr8_A           15 ILWTRNDDRVILLECQKRGPSSKTFAYLAAKL-DKNPNQVSERFQQLMK   62 (70)
Confidence            469999999999999999872  499999999 8999999999987653

>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*

Probab=96.99  E-value=0.00013  Score=53.98  Aligned_cols=47  Identities=28%  Similarity=0.511  Sum_probs=38.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC------C---Cccccccccc----cCChhhhhhhccccC
Q 025351           38 KGPWSAEEDRILTRLVERYGP------R---NWSLISRYIK----GRSGKSCRLRWCNQL   84 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~------~---nW~~Ia~~l~----~Rs~~qcr~Rw~~~L   84 (254)
                      ...||.+|..+|+.+...+..      .   .|..||..|.    .||+.||+.+|.++.
T Consensus         4 ~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K~~nL~   63 (86)
T 2ebi_A            4 AETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDKWRNLL   63 (86)
T ss_dssp             SCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            467999999999999986421      1   3999999883    699999999998754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.97  E-value=0.0012  Score=49.62  Aligned_cols=51  Identities=18%  Similarity=0.356  Sum_probs=43.4

Q ss_pred             CCCCCcCCCCHHHHHHHHHHHHHhCC--CCccccccccccCChhhhhhhcccc
Q 025351           33 KPERIKGPWSAEEDRILTRLVERYGP--RNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        33 ~p~~~kg~WT~eED~~L~~lV~~~g~--~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      ...-+---||.|||..|+..+++-|.  .-|..||+.|.+|++.|+..||+.+
T Consensus        28 s~Ge~VvlWTRe~DR~IL~~cQ~~G~s~~tFa~iA~~L~Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           28 STGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCCCEEEEeccccCHHHHHHHHhcCCChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence            33444567999999999999999986  3599999999999999999999763

>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*

Probab=95.56  E-value=0.0058  Score=46.21  Aligned_cols=44  Identities=23%  Similarity=0.381  Sum_probs=38.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccc-----cCChhhhhhhcccc
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYIK-----GRSGKSCRLRWCNQ   83 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~-----~Rs~~qcr~Rw~~~   83 (254)
                      ..||.||...|..|+++|..+ |.-|+....     .||..+.+.||..+
T Consensus        31 ~~WT~eETd~LfdLc~~fdlR-w~vI~DRy~~~~~~~RtvEdLK~RYY~V   79 (93)
T 4iej_A           31 DAWTKAETDHLFDLSRRFDLR-FVVIHDRYDHQQFKKRSVEDLKERYYHI   79 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTTC-HHHHHHHCCTTTSCCCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCC-eEEEeeccccCCCCCCCHHHHHHHHHHH
Confidence            579999999999999999976 999998763     69999999998764

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=94.51  E-value=0.073  Score=37.46  Aligned_cols=48  Identities=19%  Similarity=0.156  Sum_probs=40.1

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCC---hhhhhhcC--CCCCHHHHHHHHHHhh
Q 025351           88 VAHRPFSPAEDDTILAAHARFGNR---WATIARLL--PGRTDNAVKNHWNSTL  135 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~~---W~~IA~~l--~gRT~~q~k~Rw~~~l  135 (254)
                      ..+-.||+|..+..++|+..+|..   +..|-+.|  +|.|..+|+.|.+.+.
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR   57 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999964   77888865  6899999999886543

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=93.37  E-value=0.097  Score=47.45  Aligned_cols=48  Identities=17%  Similarity=0.284  Sum_probs=41.9

Q ss_pred             CCCCChHHHHHHHHHHHhcCC-ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           90 HRPFSPAEDDTILAAHARFGN-RWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      .+.||..|...++.++..||. +|..||..|+|+|...|+..+....++
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~~~~~IA~ev~~Kt~eEV~~Y~~vFw~r  158 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNAVFWER  158 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHHHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Confidence            347999999999999999995 799999999999999997777655554

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=92.82  E-value=0.073  Score=37.45  Aligned_cols=48  Identities=10%  Similarity=0.089  Sum_probs=37.8

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC--cccccccc--ccCChhhhhhhcccc
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRN--WSLISRYI--KGRSGKSCRLRWCNQ   83 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~n--W~~Ia~~l--~~Rs~~qcr~Rw~~~   83 (254)
                      ..+-.||+|.-+.+..+|++.|...  +..|.+.|  ++.|..++..|.+.|
T Consensus         5 k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKY   56 (64)
T 1irz_A            5 KPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             CSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            3456799999999999999999432  67888776  578888888776554

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=91.57  E-value=0.09  Score=46.90  Aligned_cols=28  Identities=36%  Similarity=0.618  Sum_probs=26.0

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccc
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISR   66 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~   66 (254)
                      ..|+.+||..|+..|.+||.++|..|-.
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            4699999999999999999999999974

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=91.37  E-value=0.18  Score=42.39  Aligned_cols=51  Identities=22%  Similarity=0.285  Sum_probs=40.1

Q ss_pred             CCCCCCCChHHHHHHHHHHHhcC---CChhhhhh--cCCCCCHHHHHHHHHHhhcc
Q 025351           87 SVAHRPFSPAEDDTILAAHARFG---NRWATIAR--LLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        87 ~~~~~~WT~EED~~Ll~~v~~~G---~~W~~IA~--~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      .-....||..|-..|++++.+||   .+|..|+.  .|.++|...|+..+..++..
T Consensus         4 ~~~~~~~t~~E~r~fira~~kfG~~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~   59 (211)
T 4b4c_A            4 RENIKGFSDAEIRRFIKSYKKFGGPLERLDAIARDAELVDKSETDLRRLGELVHNG   59 (211)
T ss_dssp             ----CCSCHHHHHHHHHHHTTCSSGGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred             cccCCCCCHHHHHHHHHHHHHHCCchhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence            34556899999999999999999   47999986  47899999999877655543

>2xb0_X Chromo domain-containing protein 1; hydrolase, DNA-binding protein, transcription, chromatin REG; HET: GOL; 2.00A {Saccharomyces cerevisiae} PDB: 3ted_A

Probab=89.10  E-value=0.22  Score=44.40  Aligned_cols=27  Identities=22%  Similarity=0.608  Sum_probs=24.5

Q ss_pred             CCCChHHHHHHHHHHHhcC-CChhhhhh
Q 025351           91 RPFSPAEDDTILAAHARFG-NRWATIAR  117 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G-~~W~~IA~  117 (254)
                      ..|+.+||..||..|.+|| +.|.+|..
T Consensus       169 c~W~~~dD~~LLvGIykyGyG~We~Ir~  196 (270)
T 2xb0_X          169 SNWTKEEDEKLLIGVFKYGYGSWTQIRD  196 (270)
T ss_dssp             SCCCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCcChHHHHHHHHHHHHHcCCcHHHHhc
Confidence            3699999999999999999 68999965

>2y9y_A Imitation switch protein 1 (DEL_ATPase); transcription, nuclear protein complex, chromatin remodeling nucleosome remodeling; 3.25A {Saccharomyces cerevisiae} PDB: 2y9z_A

Probab=80.16  E-value=0.67  Score=43.05  Aligned_cols=43  Identities=28%  Similarity=0.414  Sum_probs=33.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhCC---CCcccccccc------------ccCChhhhhhhc
Q 025351           38 KGPWSAEEDRILTRLVERYGP---RNWSLISRYI------------KGRSGKSCRLRW   80 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~---~nW~~Ia~~l------------~~Rs~~qcr~Rw   80 (254)
                      +..||.+||..|+-++.+||.   ++|..|-..+            ..||+..+..|.
T Consensus       228 ~k~yteeEDRfLL~~l~k~G~~~~g~we~Ir~~Ir~~p~FrFDwF~kSRT~~EL~rRc  285 (374)
T 2y9y_A          228 KRTYSEEEDRFILLMLFKYGLDRDDVYELVRDEIRDCPLFELDFYFRSRTPVELARRG  285 (374)
T ss_dssp             CCCSCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHCSGGGSCHHHHTCCHHHHHHHH
T ss_pred             CCccCHHHHHHHHHHHHHhccCCCChHHHHHHHHHhCcchhhhHHHhcCCHHHHHHHH
Confidence            457999999999999999999   8899996543            346666655554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-21
d1gvda_	52	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	1e-09
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	2e-20
d1guua_	50	a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus	6e-10
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	7e-20
d1igna1	86	a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Ba	1e-09
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	2e-17
d2ckxa1	83	a.4.1.3 (A:578-660) Telomere binding protein TBP1	9e-06
d1w0ta_	52	a.4.1.4 (A:) DNA-binding domain of human telomeric	7e-15
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-14
d1gv2a2	47	a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mou	2e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	1e-13
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	6e-13
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	1e-13
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	2e-08
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	5e-13
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	2e-12
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	7e-13
d1w0ua_	55	a.4.1.4 (A:) Telomeric repeat binding factor 2, TR	1e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-12
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	3e-12
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	8e-12
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	3e-09
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	2e-11
d1x41a1	47	a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, T	4e-04
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-10
d1ug2a_	95	a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mu	2e-05

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 80.9 bits (200), Expect = 6e-21
 Identities = 29/50 (58%), Positives = 41/50 (82%)

Query: 37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          IKGPW+ EED+ L +LV++YGP+ WS+I++++KGR GK CR RW N L+P
Sbjct: 2  IKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP 51

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.5 bits (121), Expect = 1e-09
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 92  PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLK 136
           P++  ED  ++    ++G  RW+ IA+ L GR     +  W++ L 
Sbjct: 5   PWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLN 50

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.8 bits (197), Expect = 2e-20
 Identities = 19/49 (38%), Positives = 29/49 (59%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSP 86
          K  W+ EED  L +LVE+ G  +W +I+ Y+  R+   C+ RW   L+P
Sbjct: 1  KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP 49

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 50

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.3 bits (123), Expect = 6e-10
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 92  PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLK 136
            ++  ED+ +     + G + W  IA  LP RTD   ++ W   L 
Sbjct: 3   RWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLN 48

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 79.2 bits (195), Expect = 7e-20
 Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 38  KGPWSAEEDRILTRLVERYGPR-----NWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRP 92
           K  ++ EED  +  +V +   R      +  IS Y+   +G S R R+   LS  + +  
Sbjct: 1   KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVY 60

Query: 93  FSPAEDDTILAAHARFGN 110
                   +         
Sbjct: 61  EVDKFGKLVRDDDGNLIK 78

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 86

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.9 bits (124), Expect = 1e-09
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 91  RPFSPAEDDTILAAHARFGNR------WATIARLLPGRTDNAVKNHWNSTLKRR 138
             F+  ED+ IL    +   R      +  I+  +P  T N++++ +   L +R
Sbjct: 2   ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR 55

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 72.8 bits (178), Expect = 2e-17
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 10/82 (12%)

Query: 40  PWSAEEDRILTRLVERYGPRNWSLISRY----IKGRSGKSCRLRWCNQL-----SPSVAH 90
           P+S  E   L   VE  G   W  +          R+    + +W   +     +P    
Sbjct: 2   PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRR 61

Query: 91  RPFSPAED-DTILAAHARFGNR 111
               P +  D +LAAHA +  +
Sbjct: 62  GEPVPQDLLDRVLAAHAYWSQQ 83

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 83

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 40.8 bits (95), Expect = 9e-06
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 91  RPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLKRRTREHPVQ 145
           RPFS AE + ++ A    G  RW  +          RT   +K+ W + +   +     +
Sbjct: 1   RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQR 60

Query: 146 MQPHQQQQLMDSV 158
                 Q L+D V
Sbjct: 61  RGEPVPQDLLDRV 73

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (158), Expect = 7e-15
 Identities = 15/47 (31%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYI--KGRSGKSCRLRWCN 82
          +  W  EED+ L   V +YG  NWS I  +     R+    + RW  
Sbjct: 2  RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRT 48

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 63.7 bits (155), Expect = 2e-14
 Identities = 29/45 (64%), Positives = 35/45 (77%)

Query: 92  PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLK 136
            ++  ED  I  AH R GNRWA IA+LLPGRTDNA+KNHWNST++
Sbjct: 3   SWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR 47

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 61.0 bits (148), Expect = 2e-13
 Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL 84
          K  W+ EEDRI+ +  +R     W+ I++ + GR+  + +  W + +
Sbjct: 1  KTSWTEEEDRIIYQAHKRL-GNRWAEIAKLLPGRTDNAIKNHWNSTM 46

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (151), Expect = 1e-13
 Identities = 9/54 (16%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 29 RATHKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN 82
             +K  ++   WS +E         ++  +N+ LI+ +++ ++   C L +  
Sbjct: 8  MKVYKDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYL 60

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 6e-13
 Identities = 9/46 (19%), Positives = 16/46 (34%)

Query: 92  PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137
            +S  E +T      +    +  IA  L  +T      ++  T K 
Sbjct: 19  MWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKKN 64

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.0 bits (150), Expect = 1e-13
 Identities = 10/51 (19%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 33 KPERIKGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRW 80
          +    + PW+  + ++L   +++Y       W  I+R +  +S + C  R+
Sbjct: 7  RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (112), Expect = 2e-08
 Identities = 8/51 (15%), Positives = 19/51 (37%), Gaps = 4/51 (7%)

Query: 85  SPSVAHRPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHW 131
               A  P++  +   +  A  ++     + W  IAR +P ++       +
Sbjct: 7   RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARY 57

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 5e-13
 Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 35 ERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN 82
          ++    W+ EE  +  + + +YG  ++  IS  I  +S    +  + N
Sbjct: 2  QKCNARWTTEEQLLAVQAIRKYGR-DFQAISDVIGNKSVVQVKNFFVN 48

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 2e-12
 Identities = 8/46 (17%), Positives = 22/46 (47%)

Query: 92  PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR 137
            ++  E    + A  ++G  +  I+ ++  ++   VKN + +  +R
Sbjct: 7   RWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR 52

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (144), Expect = 7e-13
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYI--KGRSGKSCRLRWCNQLSPSV 88
          K  W+ EE   +   V++YG  NW+ IS+      R+    + RW       +
Sbjct: 2  KQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM 54

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 55

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 91  RPFSPAEDDTILAAHARFG-NRWATIARL--LPGRTDNAVKNHWNSTLKRR 138
           + ++  E + + A   ++G   WA I++      RT   +K+ W +  +  
Sbjct: 3   QKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLG 53

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.1 bits (143), Expect = 1e-12
 Identities = 15/60 (25%), Positives = 29/60 (48%)

Query: 92  PFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQ 151
            ++  E +      A+FG RW  I++L+  RT   VK++     K + +    +  P+Q+
Sbjct: 4   KWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETPNQK 63

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.4 bits (141), Expect = 3e-12
 Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAE 97
             W+ EE  +  + + ++  R W+ IS+ I  R+    +          V         
Sbjct: 2  SVKWTIEEKELFEQGLAKF-GRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP 60

Query: 98 D 98
          +
Sbjct: 61 N 61

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 56.9 bits (137), Expect = 8e-12
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 40 PWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWC 81
          PWSA+E++   R +  Y    P  W+ ++R ++GR+ +  +  + 
Sbjct: 3  PWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYE 47

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 49.9 bits (119), Expect = 3e-09
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)

Query: 91  RPFSPAEDDTILAAHARFG----NRWATIARLLPGRTDNAVKNHWNSTLK 136
           RP+S  E+     A A +     +RWA +AR + GRT   VK H+   ++
Sbjct: 2   RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE 51

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.3 bits (133), Expect = 2e-11
 Identities = 9/42 (21%), Positives = 19/42 (45%)

Query: 41 WSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCN 82
          W+A+E+  L   V   G  NW  ++  +  ++ + C   +  
Sbjct: 4  WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMK 45

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Length = 47

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 4e-04
 Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 93  FSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWN 132
           ++  E+  +L A    G   W  +A  +  +T    + H+ 
Sbjct: 4   WTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYM 44

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.1 bits (130), Expect = 2e-10
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 5  SYSSTSSSESSSSESSLSGNNKTRRATHKPERIKGPWSAEEDRILTRLVERYGPRN--WS 62
          S SS + +   +SE+++  NN               W+ E DR++  + +  G +   +S
Sbjct: 3  SGSSGAGALPKASEATVCANNSKVS---STGEKVVLWTREADRVILTMCQEQGAQPHTFS 59

Query: 63 LISRYIKGRSGKSCRLRW 80
          +IS+ +  ++      R+
Sbjct: 60 VISQQLGNKTPVEVSHRF 77

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Length = 95

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 10/70 (14%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 71  RSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNR---WATIARLLPGRTDNAV 127
            S  +         S       ++   D  IL      G +   ++ I++ L  +T   V
Sbjct: 14  ASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEV 73

Query: 128 KNHWNSTLKR 137
            + +   ++ 
Sbjct: 74  SHRFRELMQL 83

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.78
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.77
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.72
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.71
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.67
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.62
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.61
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.58
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	99.56
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	99.54
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	99.52
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.52
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.52
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	99.52
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.49
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	99.43
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.41
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	99.39
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.39
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	99.37
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.35
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.33
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	99.27
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.24
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.23
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	99.15
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	99.1
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	99.01
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.29
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	98.21
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.04
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	97.95
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	97.85
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	97.57
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.93
d1fexa_	59	Rap1 {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	96.81
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.91
d1x58a1	49	Hypothetical protein 4930532d21rik {Mouse (Mus mus	95.56
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	95.54
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	90.91
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.71
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	90.25
d1ofcx2	128	SLIDE domain of the nucleosome remodeling ATPase I	80.69

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=1.3e-21  Score=146.23  Aligned_cols=71  Identities=21%  Similarity=0.275  Sum_probs=65.8

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC-----CccccccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhc
Q 025351           38 KGPWSAEEDRILTRLVERYGPR-----NWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARF  108 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~-----nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~  108 (254)
                      |++||+|||++|+++|.+||..     +|..||+.|||||++||+.||.++|+|.+++++||++||.+|++.+..+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~t~~ed~ll~d~~~~l   76 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYEVDKFGKLVRDDDGNL   76 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEECBCTTSCBCBCTTSCB
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCCCCchhHHHHHHhhcc
Confidence            6899999999999999999864     4999999999999999999999999999999999999999998776544

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=6.4e-20  Score=124.64  Aligned_cols=52  Identities=56%  Similarity=1.193  Sum_probs=49.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS   87 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~   87 (254)
                      ++||+||+|||++|+++|++||..+|..||+.|++||+.||+.||+++|+|.
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P~   52 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPE   52 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            4789999999999999999999889999999999999999999999999985

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=5.3e-19  Score=119.02  Aligned_cols=50  Identities=38%  Similarity=0.862  Sum_probs=48.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCC
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPS   87 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~   87 (254)
                      |++||+|||++|+.+|.+||..+|.+||..|++||+.||+.||.++|+|.
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P~   50 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNPE   50 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCCC
Confidence            57899999999999999999989999999999999999999999999984

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=4.9e-18  Score=112.88  Aligned_cols=47  Identities=62%  Similarity=1.109  Sum_probs=45.1

Q ss_pred             CCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351           90 HRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk  136 (254)
                      +.+||+|||++|++++.+||++|+.||.+|||||+++||+||+.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~~W~~Ia~~~~gRt~~~~knr~~~~lr   47 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMR   47 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSSCHHHHHTTCTTCCHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHHhhHHHHHHhHcCCCCHHHHHHHHHHHcC
Confidence            57999999999999999999999999999999999999999998875

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2.3e-17  Score=111.81  Aligned_cols=50  Identities=26%  Similarity=0.699  Sum_probs=47.3

Q ss_pred             CCCCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           88 VAHRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      +.+++||+|||++|+++|.+|| ++|..||+.|+|||+.||++||+++|++
T Consensus         1 l~rg~WT~eED~~L~~~v~~~g~~~W~~Ia~~l~~Rt~~qc~~Rw~~~L~P   51 (52)
T d1gvda_           1 LIKGPWTKEEDQRLIKLVQKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNP   51 (52)
T ss_dssp             CCCCSCCHHHHHHHHHHHHHHCTTCHHHHHTTSTTCCHHHHHHHHHHTTSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            4689999999999999999999 5899999999999999999999999876

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.62  E-value=3.8e-17  Score=120.84  Aligned_cols=71  Identities=20%  Similarity=0.351  Sum_probs=59.5

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc----cccCChhhhhhhccccC-----CCCCCCCCCChHHHHHHHHHHHhcCC
Q 025351           40 PWSAEEDRILTRLVERYGPRNWSLISRY----IKGRSGKSCRLRWCNQL-----SPSVAHRPFSPAEDDTILAAHARFGN  110 (254)
Q Consensus        40 ~WT~eED~~L~~lV~~~g~~nW~~Ia~~----l~~Rs~~qcr~Rw~~~L-----~p~~~~~~WT~EED~~Ll~~v~~~G~  110 (254)
                      +||+|||++|+.+|++||..+|..|++.    +++||+.||++||.++|     .|..+++.|+++|   |+..|.+++.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~~~~~~~~~~~~p~e---ll~~v~~~~~   78 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTASIAPQQRRGEPVPQD---LLDRVLAAHA   78 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHHSCGGGCCSSCCCHH---HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhccCcccccCCCCCHH---HHHHHHHHHH
Confidence            7999999999999999999899999975    58999999999999988     5777888999877   4444444445


Q ss_pred             Chh
Q 025351          111 RWA  113 (254)
Q Consensus       111 ~W~  113 (254)
                      +|.
T Consensus        79 ~ws   81 (83)
T d2ckxa1          79 YWS   81 (83)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            664

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.9e-16  Score=105.42  Aligned_cols=48  Identities=27%  Similarity=0.577  Sum_probs=45.5

Q ss_pred             CCCCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           90 HRPFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      +++||+|||++|+++|.+|| ++|..||..|+|||+.||++||+++|.+
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~W~~Ia~~~~~Rt~~qcr~Rw~~~L~P   49 (50)
T d1guua_           1 KTRWTREEDEKLKKLVEQNGTDDWKVIANYLPNRTDVQCQHRWQKVLNP   49 (50)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCSSCHHHHHHTSTTCCHHHHHHHHHHHHSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHhhCCC
Confidence            46899999999999999999 5899999999999999999999999976

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.2e-16  Score=108.05  Aligned_cols=53  Identities=26%  Similarity=0.497  Sum_probs=48.3

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccc--cccCChhhhhhhccccCCCCCC
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRY--IKGRSGKSCRLRWCNQLSPSVA   89 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~--l~~Rs~~qcr~Rw~~~L~p~~~   89 (254)
                      ++++||+|||++|+.+|++||..+|..|++.  +++||+.||++||.+++++.++
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~N   55 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGMN   55 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCCC
Confidence            4679999999999999999998899999987  5699999999999999888764

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.56  E-value=1e-15  Score=113.85  Aligned_cols=65  Identities=20%  Similarity=0.318  Sum_probs=55.7

Q ss_pred             CCCCChHHHHHHHHHHHhcCCC------hhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCCCChhHHHHHHH
Q 025351           90 HRPFSPAEDDTILAAHARFGNR------WATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQMQPHQQQQLMD  156 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~~------W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~~~~~e~~~L~~  156 (254)
                      +++||+|||++|+++|..||..      |..||..|||||+.||++||+++|.+.+.+..+  +++++..+++
T Consensus         1 k~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~l~~~~~--t~~ed~ll~d   71 (86)
T d1igna1           1 KASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKRLEYVYE--VDKFGKLVRD   71 (86)
T ss_dssp             CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGGCCCEEC--BCTTSCBCBC
T ss_pred             CCCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCccccCCCC--CCchhHHHHH
Confidence            5799999999999999999964      999999999999999999999999999987764  4444444433

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=8.8e-16  Score=101.79  Aligned_cols=46  Identities=30%  Similarity=0.743  Sum_probs=43.4

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccC
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL   84 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L   84 (254)
                      |++||+|||++|+.+|.+||. +|..||..||+||+.||+.||.++|
T Consensus         1 K~~WT~eED~~L~~~v~~~G~-~W~~Ia~~~~gRt~~~~knr~~~~l   46 (47)
T d1gv2a2           1 KTSWTEEEDRIIYQAHKRLGN-RWAEIAKLLPGRTDNAIKNHWNSTM   46 (47)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-CHHHHHTTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHHhh-HHHHHHhHcCCCCHHHHHHHHHHHc
Confidence            578999999999999999996 6999999999999999999998875

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=5.3e-15  Score=101.00  Aligned_cols=51  Identities=20%  Similarity=0.474  Sum_probs=46.3

Q ss_pred             CCCCCChHHHHHHHHHHHhcC-CChhhhhhc--CCCCCHHHHHHHHHHhhcccc
Q 025351           89 AHRPFSPAEDDTILAAHARFG-NRWATIARL--LPGRTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G-~~W~~IA~~--l~gRT~~q~k~Rw~~~lk~~~  139 (254)
                      ++.+||+|||+.|+++|++|| .+|..||+.  |++||+.||++||++++++.+
T Consensus         1 Kr~~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k~~~   54 (55)
T d1w0ua_           1 KKQKWTVEESEWVKAGVQKYGEGNWAAISKNYPFVNRTAVMIKDRWRTMKRLGM   54 (55)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHHHHhCCChHHHHHhhcCCCCcCHHHHHHHHHHHhcCCC
Confidence            467999999999999999999 589999997  569999999999999998764

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.1e-15  Score=101.27  Aligned_cols=44  Identities=20%  Similarity=0.464  Sum_probs=42.3

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351           40 PWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        40 ~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      .||+|||++|+++|++||..||..||+.|++||+.||+.||.++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            49999999999999999999999999999999999999999875

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.2e-15  Score=99.58  Aligned_cols=48  Identities=21%  Similarity=0.457  Sum_probs=43.4

Q ss_pred             CCCCCChHHHHHHHHHHHhcCC-ChhhhhhcC--CCCCHHHHHHHHHHhhc
Q 025351           89 AHRPFSPAEDDTILAAHARFGN-RWATIARLL--PGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~-~W~~IA~~l--~gRT~~q~k~Rw~~~lk  136 (254)
                      ++++||+|||+.|+++|.+||. +|..|+..+  .|||+.||++||+++.|
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~K   51 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHHC
Confidence            4689999999999999999995 899999875  48999999999988765

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-15  Score=102.60  Aligned_cols=48  Identities=31%  Similarity=0.485  Sum_probs=43.8

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCcccccccc--ccCChhhhhhhccccC
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYI--KGRSGKSCRLRWCNQL   84 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l--~~Rs~~qcr~Rw~~~L   84 (254)
                      ++++||+|||++|+++|.+||..+|..|++.+  .+||+.||++||.++.
T Consensus         1 kr~~WT~eED~~L~~~v~~~G~~~W~~I~~~~~~~~Rt~~q~r~Rw~nl~   50 (52)
T d1w0ta_           1 KRQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNNRTSVMLKDRWRTMK   50 (52)
T ss_dssp             CCCCCCHHHHHHHHHHHHHHCTTCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHCCCCHHHHHhhcCCCCCCHHHHHHHHHHHH
Confidence            46899999999999999999998999999875  5999999999998864

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-14  Score=102.45  Aligned_cols=56  Identities=23%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             CCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcccccCCCCC
Q 025351           90 HRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKRRTREHPVQ  145 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~~~~  145 (254)
                      ...||+|||.+|++++..||++|..||.+|++||+.||++||+.++++..+.....
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~   57 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGRRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDK   57 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCSCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTC
T ss_pred             CCCCCHHHHHHHHHHHHHhcchHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35799999999999999999999999999999999999999999999877666533

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=4.4e-14  Score=93.41  Aligned_cols=43  Identities=19%  Similarity=0.417  Sum_probs=40.8

Q ss_pred             CCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHHHh
Q 025351           92 PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWNST  134 (254)
Q Consensus        92 ~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~~~  134 (254)
                      .||+|||.+|+++|..|| ++|..||.+|+|||+.||++||+++
T Consensus         3 ~Wt~eEd~~L~~~v~~~G~~nW~~Ia~~~~~Rt~~Qcr~r~~~~   46 (47)
T d1x41a1           3 SWTAQEEMALLEAVMDCGFGNWQDVANQMCTKTKEECEKHYMKY   46 (47)
T ss_dssp             SSCHHHHHHHHHHHHHTCTTCHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCCccHHHHHHHcCCCCHHHHHHHHHHh
Confidence            499999999999999999 5799999999999999999999875

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.8e-14  Score=97.64  Aligned_cols=51  Identities=20%  Similarity=0.553  Sum_probs=45.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCC---CccccccccccCChhhhhhhccc
Q 025351           32 HKPERIKGPWSAEEDRILTRLVERYGPR---NWSLISRYIKGRSGKSCRLRWCN   82 (254)
Q Consensus        32 ~~p~~~kg~WT~eED~~L~~lV~~~g~~---nW~~Ia~~l~~Rs~~qcr~Rw~~   82 (254)
                      ..+...+++||+|||++|+.+|.+||..   +|..||..||+||+.||+.||..
T Consensus         6 ~~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~   59 (60)
T d2cqra1           6 ERARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL   59 (60)
T ss_dssp             CTTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred             ccCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4556677899999999999999999975   49999999999999999999964

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-14  Score=101.56  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=51.8

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccCCCCCCCCCCChHH
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAE   97 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EE   97 (254)
                      ..||+|||++|+++|..|| .+|..||+.|++||..||+.||.+++.+..+.+.+...+
T Consensus         3 ~~WT~eEd~~l~~~~~~~G-~~W~~Ia~~~~~Rt~~q~k~ry~~~~~~~~k~~~~~~~~   60 (65)
T d2cu7a1           3 VKWTIEEKELFEQGLAKFG-RRWTKISKLIGSRTVLQVKSYARQYFKNKVKCGLDKETP   60 (65)
T ss_dssp             CCCCHHHHHHHHHHHHHTC-SCHHHHHHHHSSSCHHHHHHHHHHHHHHHSCSCTTCCCS
T ss_pred             CCCCHHHHHHHHHHHHHhc-chHHHHHHHcCCCCHHHHHHHHHHHHHHHHhcCCCCCCc
Confidence            5799999999999999999 689999999999999999999999988777776665544

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.9e-13  Score=93.66  Aligned_cols=50  Identities=16%  Similarity=0.379  Sum_probs=45.2

Q ss_pred             CCCCCCCCCChHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHh
Q 025351           85 SPSVAHRPFSPAEDDTILAAHARFGN----RWATIARLLPGRTDNAVKNHWNST  134 (254)
Q Consensus        85 ~p~~~~~~WT~EED~~Ll~~v~~~G~----~W~~IA~~l~gRT~~q~k~Rw~~~  134 (254)
                      .+...+.+||+|||.+|++++..||.    +|..||..|||||+.||++||+.+
T Consensus         7 ~~~~~~~~WT~eEd~~L~~~v~~~~~~~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1           7 RARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             TTTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             cCCcCCCCcCHHHHHHHHHHHHHcCCccchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            45667789999999999999999995    599999999999999999999653

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.37  E-value=1.7e-13  Score=100.79  Aligned_cols=49  Identities=29%  Similarity=0.563  Sum_probs=44.3

Q ss_pred             CCCChHHHHHHHHHHHhcCC-Chhhhhhc----CCCCCHHHHHHHHHHhhcccc
Q 025351           91 RPFSPAEDDTILAAHARFGN-RWATIARL----LPGRTDNAVKNHWNSTLKRRT  139 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~-~W~~IA~~----l~gRT~~q~k~Rw~~~lk~~~  139 (254)
                      .+||+|||+.|+++|.+||. +|..|++.    ++|||+.||++||+++|+...
T Consensus         1 r~WT~eEd~~L~~~V~~~G~~~W~~I~~~~~~~~~~Rt~~qck~RWrn~l~~~~   54 (83)
T d2ckxa1           1 RPFSVAEVEALVEAVEHLGTGRWRDVKMRAFDNADHRTYVDLKDKWKTLVHTAS   54 (83)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSSCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCcccHHHHHHHHHhhccCCCHHHHHHHHHHHhhhhc
Confidence            48999999999999999995 89999985    689999999999999997543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.35  E-value=4.4e-13  Score=93.63  Aligned_cols=46  Identities=37%  Similarity=0.680  Sum_probs=41.9

Q ss_pred             CCCChHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351           91 RPFSPAEDDTILAAHARFGN----RWATIARLLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk  136 (254)
                      .+||+|||.+|+++++.||.    +|.+||.+|+|||+.||++||+.+++
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~L~~   51 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVE   51 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            48999999999999999995    49999999999999999999976543

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=6.1e-13  Score=99.67  Aligned_cols=74  Identities=14%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             ccccccCChhhhhhhccccCCCCCCCCCCChHHHHHHHHHHHhcCCC---hhhhhhcCCCCCHHHHHHHHHHhhccc
Q 025351           65 SRYIKGRSGKSCRLRWCNQLSPSVAHRPFSPAEDDTILAAHARFGNR---WATIARLLPGRTDNAVKNHWNSTLKRR  138 (254)
Q Consensus        65 a~~l~~Rs~~qcr~Rw~~~L~p~~~~~~WT~EED~~Ll~~v~~~G~~---W~~IA~~l~gRT~~q~k~Rw~~~lk~~  138 (254)
                      |..+|..+..++..++.+..++......||.|||..||+.++++|.+   |..||+.|+||+++||++||+.+++..
T Consensus         8 a~~~p~~t~~~v~A~n~~~~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm~lf   84 (95)
T d1ug2a_           8 AGALPKASEATVCANNSKVSSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFRELMQLF   84 (95)
T ss_dssp             CCCCCCCCCCCCCCCCCCCCCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHHHHHH
T ss_pred             cccCCCCCccccccccCccCCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            44567778888888888888887788899999999999999999987   999999999999999999997666543

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=99.27  E-value=4.6e-13  Score=93.52  Aligned_cols=44  Identities=25%  Similarity=0.625  Sum_probs=40.7

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCC---ccccccccccCChhhhhhhccc
Q 025351           39 GPWSAEEDRILTRLVERYGPRN---WSLISRYIKGRSGKSCRLRWCN   82 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~n---W~~Ia~~l~~Rs~~qcr~Rw~~   82 (254)
                      .+||+|||++|+++|.+||..+   |.+||..||+||+.||+.||..
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~~~~~W~~Ia~~l~gRt~~qc~~r~~~   48 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEI   48 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHSTTCCHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCCCchHHHHHHHHcCCCCHHHHHHHHHH
Confidence            4799999999999999999754   9999999999999999999954

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4e-12  Score=89.81  Aligned_cols=49  Identities=18%  Similarity=0.144  Sum_probs=44.3

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhc
Q 025351           88 VAHRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk  136 (254)
                      ....+||+|||++|++++..||.+|..||.+|+|||..||+++|....+
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~rt~~q~~~~yy~~kk   63 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKNFGLIASFLERKTVAECVLYYYLTKK   63 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSCSSSHHHHTTTSCHHHHHHHHHHHTT
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCcHHHHHHHcCCCCHHHHHHHHHHHHC
Confidence            3446899999999999999999999999999999999999999975443

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=3.5e-12  Score=89.29  Aligned_cols=48  Identities=17%  Similarity=0.320  Sum_probs=44.5

Q ss_pred             CCCCChHHHHHHHHHHHhcCCChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           90 HRPFSPAEDDTILAAHARFGNRWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      ...||++||.+|++++..||.+|..||.+|+|||..||+++|..+.++
T Consensus         5 ~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           5 NARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            457999999999999999999999999999999999999999877653

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.7e-12  Score=88.33  Aligned_cols=51  Identities=18%  Similarity=0.395  Sum_probs=45.0

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhcccc
Q 025351           32 HKPERIKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        32 ~~p~~~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      ........+||+|||++|+.+|.+|| .+|..||..|++||..||+.+|...
T Consensus        11 ~~~~~~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~rt~~q~~~~yy~~   61 (68)
T d1xc5a1          11 YKDRQVMNMWSEQEKETFREKFMQHP-KNFGLIASFLERKTVAECVLYYYLT   61 (68)
T ss_dssp             TTSTTTTTCCCTTTHHHHHHHHHHTT-SCSSSHHHHTTTSCHHHHHHHHHHH
T ss_pred             HccccCCCCCCHHHHHHHHHHHHHHC-CcHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34445567899999999999999999 5899999999999999999999754

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-11  Score=85.94  Aligned_cols=47  Identities=23%  Similarity=0.439  Sum_probs=43.2

Q ss_pred             CcCCCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhhhccccC
Q 025351           37 IKGPWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRLRWCNQL   84 (254)
Q Consensus        37 ~kg~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L   84 (254)
                      ...+||++||++|..++..|| .+|..||..|++||..||+.+|.++.
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G-~~w~~Ia~~~~~kt~~q~~~~y~~~~   50 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYG-RDFQAISDVIGNKSVVQVKNFFVNYR   50 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHS-SCHHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhC-chHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            346799999999999999999 67999999999999999999998764

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.01  E-value=1.7e-10  Score=86.17  Aligned_cols=52  Identities=17%  Similarity=0.344  Sum_probs=45.7

Q ss_pred             CCCCCCcCCCCHHHHHHHHHHHHHhCCCC--ccccccccccCChhhhhhhcccc
Q 025351           32 HKPERIKGPWSAEEDRILTRLVERYGPRN--WSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        32 ~~p~~~kg~WT~eED~~L~~lV~~~g~~n--W~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      .....+...||.|||+.|+..++++|...  |..||+.|++|++.||+.||..+
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~~~~tw~~Ia~~L~~Rs~~qvr~Rf~~L   80 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGAQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTSCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            34455678899999999999999999654  99999999999999999999754

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=5.4e-07  Score=60.85  Aligned_cols=44  Identities=16%  Similarity=0.234  Sum_probs=40.2

Q ss_pred             CCCChHHHHHHHHHHHhcCCChhhhhhc-CCCCCHHHHHHHHHHh
Q 025351           91 RPFSPAEDDTILAAHARFGNRWATIARL-LPGRTDNAVKNHWNST  134 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~~W~~IA~~-l~gRT~~q~k~Rw~~~  134 (254)
                      ..||+||-.+..+++..||.+|..|++. +|+||..+|.+.|...
T Consensus         2 d~WT~eE~~~F~~~~~~yGKdf~~I~~~~v~~Ks~~~~v~fYY~~   46 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKDFNDIRQDFLPWKSLTSIIEYYYMW   46 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSCHHHHHHTTCSSSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHcccHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            4799999999999999999999999985 6999999999999643

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=7.2e-07  Score=60.74  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=40.6

Q ss_pred             CCCChHHHHHHHHHHHhcCC----ChhhhhhcCCCCCHHHHHHHHHHhhcc
Q 025351           91 RPFSPAEDDTILAAHARFGN----RWATIARLLPGRTDNAVKNHWNSTLKR  137 (254)
Q Consensus        91 ~~WT~EED~~Ll~~v~~~G~----~W~~IA~~l~gRT~~q~k~Rw~~~lk~  137 (254)
                      ..||.+|+.+|.++++.|..    +|.+||..+ |||..+|..||+.+..-
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l~e~   51 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQLKDS   51 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHHHHh
Confidence            47999999999999999963    699999999 99999999999655433

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.04  E-value=1.1e-06  Score=59.32  Aligned_cols=42  Identities=24%  Similarity=0.384  Sum_probs=38.1

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccc-cccCChhhhhhhccc
Q 025351           40 PWSAEEDRILTRLVERYGPRNWSLISRY-IKGRSGKSCRLRWCN   82 (254)
Q Consensus        40 ~WT~eED~~L~~lV~~~g~~nW~~Ia~~-l~~Rs~~qcr~Rw~~   82 (254)
                      .||+||-.++.+++..|| +||..|++. +|+||..||...|..
T Consensus         3 ~WT~eE~~~F~~~~~~yG-Kdf~~I~~~~v~~Ks~~~~v~fYY~   45 (57)
T d2crga1           3 EWSASEACLFEEALEKYG-KDFNDIRQDFLPWKSLTSIIEYYYM   45 (57)
T ss_dssp             CCCHHHHHHHHHHHHHTC-SCHHHHHHTTCSSSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHc-ccHHHHHHHHcCCCCHHHHHHHHHH
Confidence            599999999999999999 589999975 699999999988754

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.3e-06  Score=59.44  Aligned_cols=44  Identities=23%  Similarity=0.375  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHHHhCCC---CccccccccccCChhhhhhhcccc
Q 025351           39 GPWSAEEDRILTRLVERYGPR---NWSLISRYIKGRSGKSCRLRWCNQ   83 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~---nW~~Ia~~l~~Rs~~qcr~Rw~~~   83 (254)
                      +.||.+|+.+|.+++.+|..+   -|.+||..| ||+..+|..||...
T Consensus         2 ~eWT~ee~~~le~Al~~~P~gt~~RW~~IA~~v-gkt~~ev~~~~k~l   48 (59)
T d2cqqa1           2 PEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL-GRSVTDVTTKAKQL   48 (59)
T ss_dssp             CCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH-TSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCCCCCcHHHHHHHHHH-CCCHHHHHHHHHHH
Confidence            469999999999999999542   399999999 89999999999754

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=9.1e-06  Score=55.13  Aligned_cols=47  Identities=21%  Similarity=0.381  Sum_probs=40.9

Q ss_pred             CCCCChHHHHHHHHHHHhcC--------CC-hhhhhh-cCCCCCHHHHHHHHHHhhc
Q 025351           90 HRPFSPAEDDTILAAHARFG--------NR-WATIAR-LLPGRTDNAVKNHWNSTLK  136 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G--------~~-W~~IA~-~l~gRT~~q~k~Rw~~~lk  136 (254)
                      +.+||.+||+.|++.|+++.        |. |..+++ .++.+|-.+.|+||...|+
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999873        22 999985 6899999999999988876

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=7.4e-05  Score=47.34  Aligned_cols=45  Identities=18%  Similarity=0.425  Sum_probs=39.7

Q ss_pred             CCCCChHHHHHHHHHHHhcCCChhhhhhcC---CCCCHHHHHHHHHHh
Q 025351           90 HRPFSPAEDDTILAAHARFGNRWATIARLL---PGRTDNAVKNHWNST  134 (254)
Q Consensus        90 ~~~WT~EED~~Ll~~v~~~G~~W~~IA~~l---~gRT~~q~k~Rw~~~  134 (254)
                      +..||.||-.-|+..++.+|+.|..|-=.+   +||+..++..+|..+
T Consensus         1 Rknft~eEv~YL~~GVK~~G~~WNsILWs~PF~~GR~~vdLA~Ky~~l   48 (49)
T d1x58a1           1 RKDFTKEEVNYLFHGVKTMGNHWNSILWSFPFQKGRRAVDLAHKYHRL   48 (49)
T ss_dssp             SSSCCHHHHHHHHHHHHHHCSCHHHHHHHSCCCTTCCHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHhcchhhhhhhccCCCCCchhhHHHHHHHhh
Confidence            357999999999999999999999996544   799999999999765

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.93  E-value=0.00082  Score=45.84  Aligned_cols=47  Identities=21%  Similarity=0.208  Sum_probs=39.1

Q ss_pred             CCCCCChHHHHHHHHHHHhcCCChh---hhhhc--CCCCCHHHHHHHHHHhh
Q 025351           89 AHRPFSPAEDDTILAAHARFGNRWA---TIARL--LPGRTDNAVKNHWNSTL  135 (254)
Q Consensus        89 ~~~~WT~EED~~Ll~~v~~~G~~W~---~IA~~--l~gRT~~q~k~Rw~~~l  135 (254)
                      .+-.||+|+.+..++++..+|..|.   .|...  ++|+|..||+.|.+.+.
T Consensus         6 ~R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYr   57 (64)
T d1irza_           6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFR   57 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence            3558999999999999999998875   56554  58999999999886653

>d1fexa_ a.4.1.3 (A:) Rap1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Rap1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00026  Score=47.71  Aligned_cols=48  Identities=15%  Similarity=0.283  Sum_probs=40.5

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCC--------Ccccccc-ccccCChhhhhhhccccCC
Q 025351           38 KGPWSAEEDRILTRLVERYGPR--------NWSLISR-YIKGRSGKSCRLRWCNQLS   85 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~--------nW~~Ia~-~l~~Rs~~qcr~Rw~~~L~   85 (254)
                      +-+||.+||++|++.|..+...        -|..+++ .++.+|..+-++||.+.|.
T Consensus         2 R~~fT~eeD~~l~~yv~~~~~~~~~~~Gn~iwk~l~~~~~~~HtwQSwrdRY~K~L~   58 (59)
T d1fexa_           2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQSLKDRYLKHLR   58 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHHHHHhccCcCCccHHHHHHHHHHhcCCCCCHHHHHHHHHHHhc
Confidence            4689999999999999998432        2999984 6799999999999988764

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.81  E-value=0.00037  Score=47.64  Aligned_cols=46  Identities=11%  Similarity=0.102  Sum_probs=37.1

Q ss_pred             cCCCCHHHHHHHHHHHHHhCCCCc--ccccccc--ccCChhhhhhhcccc
Q 025351           38 KGPWSAEEDRILTRLVERYGPRNW--SLISRYI--KGRSGKSCRLRWCNQ   83 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g~~nW--~~Ia~~l--~~Rs~~qcr~Rw~~~   83 (254)
                      +-.||+||-++++.+|+.+|...|  ..|.+.|  +++|..||+.|.+.|
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKY   56 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKF   56 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHH
Confidence            456999999999999999997544  4666664  889999999876654

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.91  E-value=0.012  Score=40.25  Aligned_cols=55  Identities=11%  Similarity=0.293  Sum_probs=46.2

Q ss_pred             CCCCCCChHHHHHHHHHHHhcCCC----hhhhhhcCCCCCHHHHHHHHHHhhcccccCC
Q 025351           88 VAHRPFSPAEDDTILAAHARFGNR----WATIARLLPGRTDNAVKNHWNSTLKRRTREH  142 (254)
Q Consensus        88 ~~~~~WT~EED~~Ll~~v~~~G~~----W~~IA~~l~gRT~~q~k~Rw~~~lk~~~~~~  142 (254)
                      ..-..|+++|-++|-.+++.+...    |..+|..+..||+..|...|+.-++.+..+.
T Consensus         6 t~d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~~~s~k   64 (73)
T d1wgxa_           6 SGDKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRGKGSQK   64 (73)
T ss_dssp             CSSSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSSSCCCC
T ss_pred             CcccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCcccccccc
Confidence            345689999999999999998753    9999999988999999999988776654443

>d1x58a1 a.4.1.1 (A:8-56) Hypothetical protein 4930532d21rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Hypothetical protein 4930532d21rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.003  Score=39.72  Aligned_cols=43  Identities=23%  Similarity=0.349  Sum_probs=36.6

Q ss_pred             CCCCHHHHHHHHHHHHHhCCCCcccccccc---ccCChhhhhhhccc
Q 025351           39 GPWSAEEDRILTRLVERYGPRNWSLISRYI---KGRSGKSCRLRWCN   82 (254)
Q Consensus        39 g~WT~eED~~L~~lV~~~g~~nW~~Ia~~l---~~Rs~~qcr~Rw~~   82 (254)
                      ..||.||-.-|...|+++| ..|+.|-=.+   +||+......+|..
T Consensus         2 knft~eEv~YL~~GVK~~G-~~WNsILWs~PF~~GR~~vdLA~Ky~~   47 (49)
T d1x58a1           2 KDFTKEEVNYLFHGVKTMG-NHWNSILWSFPFQKGRRAVDLAHKYHR   47 (49)
T ss_dssp             SSCCHHHHHHHHHHHHHHC-SCHHHHHHHSCCCTTCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHhc-chhhhhhhccCCCCCchhhHHHHHHHh
Confidence            4699999999999999999 5799998555   78999888777753

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.54  E-value=0.0051  Score=42.20  Aligned_cols=49  Identities=18%  Similarity=0.373  Sum_probs=41.9

Q ss_pred             cCCCCHHHHHHHHHHHHHhC---CCCccccccccccCChhhhhhhccccCCC
Q 025351           38 KGPWSAEEDRILTRLVERYG---PRNWSLISRYIKGRSGKSCRLRWCNQLSP   86 (254)
Q Consensus        38 kg~WT~eED~~L~~lV~~~g---~~nW~~Ia~~l~~Rs~~qcr~Rw~~~L~p   86 (254)
                      .+.|+++|-++|-.++.-..   .+-|..||..+..|++..|..+|...+..
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh~~gfW~~VA~~VGtRSaeECQ~ky~~~~~~   59 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKHKPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             ccccCHHHHHHHHHHHHhcCCCCCccHHHHHHHHccCCHHHHHHHHHhCccc
Confidence            36799999999999999764   34599999999999999999999876643

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.91  E-value=0.13  Score=39.05  Aligned_cols=55  Identities=13%  Similarity=0.274  Sum_probs=43.6

Q ss_pred             CCCCCCCCChHHHHHHHHHHHhcCC-C---hhhhhh------------cCCCCCHHHHHHHHHHhhccccc
Q 025351           86 PSVAHRPFSPAEDDTILAAHARFGN-R---WATIAR------------LLPGRTDNAVKNHWNSTLKRRTR  140 (254)
Q Consensus        86 p~~~~~~WT~EED~~Ll~~v~~~G~-~---W~~IA~------------~l~gRT~~q~k~Rw~~~lk~~~~  140 (254)
                      +..+...+|.|||.-||-++.+||- +   |..|-.            .|..||+..|..|-+.+++-..+
T Consensus        45 ~~nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~tLi~~i~k  115 (128)
T d1ofcx2          45 GNNKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCNTLITLIER  115 (128)
T ss_dssp             TTCCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHHHHHHHHHH
Confidence            3445557999999999999999993 4   888742            23789999999999888876543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.71  E-value=0.26  Score=31.62  Aligned_cols=41  Identities=17%  Similarity=0.333  Sum_probs=36.5

Q ss_pred             CCChHHHHHHHHHHHhcC-CChhhhhhcCCCCCHHHHHHHHH
Q 025351           92 PFSPAEDDTILAAHARFG-NRWATIARLLPGRTDNAVKNHWN  132 (254)
Q Consensus        92 ~WT~EED~~Ll~~v~~~G-~~W~~IA~~l~gRT~~q~k~Rw~  132 (254)
                      .|+.-|=..++.+..+|| .+-..||..|.|+|...|+...+
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~Y~~   42 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIEYNA   42 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHHHHH
Confidence            489999999999999999 58999999999999999876543

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.25  E-value=0.13  Score=33.03  Aligned_cols=39  Identities=15%  Similarity=0.389  Sum_probs=35.4

Q ss_pred             CCCHHHHHHHHHHHHHhCCCCccccccccccCChhhhhh
Q 025351           40 PWSAEEDRILTRLVERYGPRNWSLISRYIKGRSGKSCRL   78 (254)
Q Consensus        40 ~WT~eED~~L~~lV~~~g~~nW~~Ia~~l~~Rs~~qcr~   78 (254)
                      .|+.-|=+.++.+.++||..|-..||..|.+++...++.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~d~~~Ia~e~~~Kt~eEV~~   39 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRDDIDNIAKDVEGKTPEEVIE   39 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTTCHHHHTTSSTTCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCHHHHHH
Confidence            499999999999999999889999999999999887654

>d1ofcx2 a.4.1.13 (X:851-978) SLIDE domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: SLIDE domain
domain: SLIDE domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.69  E-value=0.39  Score=36.27  Aligned_cols=46  Identities=20%  Similarity=0.278  Sum_probs=34.9

Q ss_pred             CCcCCCCHHHHHHHHHHHHHhCCCC---cccccccc------------ccCChhhhhhhcc
Q 025351           36 RIKGPWSAEEDRILTRLVERYGPRN---WSLISRYI------------KGRSGKSCRLRWC   81 (254)
Q Consensus        36 ~~kg~WT~eED~~L~~lV~~~g~~n---W~~Ia~~l------------~~Rs~~qcr~Rw~   81 (254)
                      .++..+|.|||.-|+-++.+||..+   |..|-..+            ..||+..+..|-.
T Consensus        47 nk~k~yteeEDRfLl~~~~~~G~~~~~~~e~ir~~Ir~~p~FrFDwf~kSRt~~el~rR~~  107 (128)
T d1ofcx2          47 NKGKNYTEIEDRFLVCMLHKLGFDKENVYEELRAAIRASPQFRFDWFIKSRTALELQRRCN  107 (128)
T ss_dssp             CCCSSCCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHCGGGTTCHHHHTCCHHHHHHHHH
T ss_pred             cCCCccCHHHHHHHHHHHHHhcCCCccHHHHHHHHHHhCcchhhhhHhccCCHHHHHHHHH
Confidence            3445699999999999999999988   87776443            3577766666653