Citrus Sinensis ID: 025352

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
cccccccccHHHHHHHHHHHHccccccEEEEEcccccEEEEcccccccccccHHccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHccEEcccHHHHHHHccccccEEEEcccccEEEEcccccccccccccccccccccccHHHHHHHHHHHccHHHHHHHHcccEEcccccccccHHHHHHHHHHHcccccccEEEccccccccccccEEEEEcHHHHcccccccccccccccccccccccEEcccc
HHHcccccEEEEEEHHHHHHHHcccccEEEEEEccccEEEEEEEccEEcHHHcEEEcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccEEEEccHHHHcHHHHccHHHHccccccHHHHHHHHHHHcccccHHHHHcccEEEcHHHccccHHHHHHHHHHHcccccEEEEEccccccHHHccEcHHHHHHHHHHHcHHHHHccEEHHHHHHHcHHHHHHHcc
mfetfnisgfyssEQAVLSLYAVGRisgctvdighgkidiaPVIEGAVQHIASRRFEVGGMDLTKLLAQElgktnpsvnlslyDVEKLKEQFSCCAEDELAYEKTQKSCeieqhtlpdgqvirigkerytvgealfqpsilgleaHGIVEQLVHTISTVSSENHRQLLENTvlcggttsmtgfEDRFQKEAglcssairptlvkppeympenltLYSAWIGGAILAKvvfpqnqhitkadydesgpsvvhrkcf
mfetfnisgfysSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQelgktnpsvnlsLYDVEKLKEQFSCCAEDELAYEKTqksceieqhtlpdgqvirIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHItkadydesgpsvvhrkcf
MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
****FNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHIT*****************
MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDE****************LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADY*************
MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query254 2.2.26 [Sep-21-2011]
Q8L4Y5363 Actin-related protein 7 O yes no 0.996 0.696 0.877 1e-133
A3ANB5360 Actin-related protein 7 O yes no 1.0 0.705 0.759 1e-116
A2XMK6360 Actin-related protein 7 O N/A no 1.0 0.705 0.759 1e-116
Q2U7A3375 Actin OS=Aspergillus oryz no no 0.976 0.661 0.440 1e-47
Q25010376 Actin, cytoplasmic A3a OS N/A no 0.972 0.656 0.434 8e-47
P48465375 Actin OS=Cryptococcus neo N/A no 0.976 0.661 0.440 2e-46
P04829376 Actin, cytoplasmic A3 OS= N/A no 0.972 0.656 0.434 2e-46
Q8X119375 Actin OS=Exophiala dermat N/A no 0.976 0.661 0.428 2e-46
Q26065376 Actin, adductor muscle OS N/A no 0.972 0.656 0.426 3e-46
P30173377 Actin-101 OS=Solanum tube N/A no 0.976 0.657 0.432 3e-46
>sp|Q8L4Y5|ARP7_ARATH Actin-related protein 7 OS=Arabidopsis thaliana GN=ARP7 PE=1 SV=1 Back     alignment and function desciption
 Score =  473 bits (1217), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 223/254 (87%), Positives = 242/254 (95%), Gaps = 1/254 (0%)

Query: 1   MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGG 60
           MFETFN+SGFY+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+GG
Sbjct: 111 MFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGG 170

Query: 61  MDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQ 120
            +LTKL AQELGKTNPS+NLS+ DVEKLKEQ++ CAEDE+AY+KTQ +CEIEQHTLPDGQ
Sbjct: 171 TELTKLFAQELGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQ-NCEIEQHTLPDGQ 229

Query: 121 VIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM 180
           VI IG+ERY+VGEALFQPSILGLE HGIVEQLV  ISTVSSENHRQLLENTVLCGGTTSM
Sbjct: 230 VISIGRERYSVGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSM 289

Query: 181 TGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKAD 240
           TGFE RFQKEA LCSSAIRPTLVKPPEYMPENL +YSAW+GGAILAKVVFPQNQH+TKAD
Sbjct: 290 TGFESRFQKEANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKAD 349

Query: 241 YDESGPSVVHRKCF 254
           YDE+GPSVVHRKCF
Sbjct: 350 YDETGPSVVHRKCF 363
Essential protein required during embryogenesis and all plant development stages, probably through a chromatin-mediated regulation of gene expression.
Arabidopsis thaliana (taxid: 3702)
>sp|A3ANB5|ARP7_ORYSJ Actin-related protein 7 OS=Oryza sativa subsp. japonica GN=ARP7 PE=2 SV=2 Back     alignment and function description
>sp|A2XMK6|ARP7_ORYSI Actin-related protein 7 OS=Oryza sativa subsp. indica GN=ARP7 PE=2 SV=2 Back     alignment and function description
>sp|Q2U7A3|ACT_ASPOR Actin OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=act1 PE=3 SV=1 Back     alignment and function description
>sp|Q25010|ACT3A_HELAM Actin, cytoplasmic A3a OS=Helicoverpa armigera GN=actA3a PE=2 SV=1 Back     alignment and function description
>sp|P48465|ACT_CRYNH Actin OS=Cryptococcus neoformans var. grubii serotype A (strain H99 / ATCC 208821 / CBS 10515 / FGSC 9487) GN=CNAG_00483 PE=3 SV=2 Back     alignment and function description
>sp|P04829|ACT3_BOMMO Actin, cytoplasmic A3 OS=Bombyx mori PE=3 SV=3 Back     alignment and function description
>sp|Q8X119|ACT_EXODE Actin OS=Exophiala dermatitidis PE=3 SV=1 Back     alignment and function description
>sp|Q26065|ACT_PLAMG Actin, adductor muscle OS=Placopecten magellanicus PE=2 SV=1 Back     alignment and function description
>sp|P30173|ACT13_SOLTU Actin-101 OS=Solanum tuberosum GN=AC101 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
225450096 361 PREDICTED: actin-related protein 7 [Viti 1.0 0.703 0.893 1e-135
18411737 363 actin-related protein 7 [Arabidopsis tha 0.996 0.696 0.877 1e-131
297817402 363 hypothetical protein ARALYDRAFT_486557 [ 0.996 0.696 0.874 1e-131
357457909 363 Actin related protein [Medicago truncatu 1.0 0.699 0.850 1e-130
255553556 360 Actin, putative [Ricinus communis] gi|22 1.0 0.705 0.858 1e-129
356534592 361 PREDICTED: actin-related protein 7-like 1.0 0.703 0.850 1e-128
356557168 361 PREDICTED: actin-related protein 7-like 1.0 0.703 0.846 1e-127
224055172 363 actin related protein [Populus trichocar 1.0 0.699 0.842 1e-127
449436311 361 PREDICTED: actin-related protein 7-like 1.0 0.703 0.842 1e-127
359807411 361 uncharacterized protein LOC100813266 [Gl 1.0 0.703 0.838 1e-127
>gi|225450096|ref|XP_002278255.1| PREDICTED: actin-related protein 7 [Vitis vinifera] gi|297736268|emb|CBI24906.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  487 bits (1254), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 227/254 (89%), Positives = 245/254 (96%)

Query: 1   MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGG 60
           MFETFNISGFY+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFE+GG
Sbjct: 108 MFETFNISGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEIGG 167

Query: 61  MDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQ 120
           +DLTKLLAQELGK+NP+VNL++ DVE+LKEQ+SCCAEDELAYEK Q+SC+ EQHTLPDGQ
Sbjct: 168 VDLTKLLAQELGKSNPTVNLNITDVERLKEQYSCCAEDELAYEKIQRSCQREQHTLPDGQ 227

Query: 121 VIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM 180
           VI IG+ERYTVGEALFQPSILGLEAHGIVEQLV +ISTVSSENHRQLLENTVLCGGT SM
Sbjct: 228 VINIGRERYTVGEALFQPSILGLEAHGIVEQLVRSISTVSSENHRQLLENTVLCGGTASM 287

Query: 181 TGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKAD 240
            GFEDRFQKEA LCSSAIRP+LVKPPEYMPENLT+YSAW+GGAILAKVVFPQNQHITK D
Sbjct: 288 GGFEDRFQKEASLCSSAIRPSLVKPPEYMPENLTMYSAWVGGAILAKVVFPQNQHITKGD 347

Query: 241 YDESGPSVVHRKCF 254
           YDE+GPS+VHRKCF
Sbjct: 348 YDETGPSIVHRKCF 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|18411737|ref|NP_567105.1| actin-related protein 7 [Arabidopsis thaliana] gi|75300978|sp|Q8L4Y5.1|ARP7_ARATH RecName: Full=Actin-related protein 7 gi|21427469|gb|AAM53247.1|AF507915_1 actin-related protein 7 [Arabidopsis thaliana] gi|20466390|gb|AAM20512.1| actin -like protein [Arabidopsis thaliana] gi|21489920|tpg|DAA00028.1| TPA_exp: actin-related protein 7; AtARP7 [Arabidopsis thaliana] gi|21593327|gb|AAM65276.1| actin-like protein [Arabidopsis thaliana] gi|22136342|gb|AAM91249.1| actin -like protein [Arabidopsis thaliana] gi|332646594|gb|AEE80115.1| actin-related protein 7 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297817402|ref|XP_002876584.1| hypothetical protein ARALYDRAFT_486557 [Arabidopsis lyrata subsp. lyrata] gi|297322422|gb|EFH52843.1| hypothetical protein ARALYDRAFT_486557 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357457909|ref|XP_003599235.1| Actin related protein [Medicago truncatula] gi|355488283|gb|AES69486.1| Actin related protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|255553556|ref|XP_002517819.1| Actin, putative [Ricinus communis] gi|223543091|gb|EEF44626.1| Actin, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356534592|ref|XP_003535837.1| PREDICTED: actin-related protein 7-like [Glycine max] Back     alignment and taxonomy information
>gi|356557168|ref|XP_003546890.1| PREDICTED: actin-related protein 7-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224055172|ref|XP_002298428.1| actin related protein [Populus trichocarpa] gi|222845686|gb|EEE83233.1| actin related protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449436311|ref|XP_004135936.1| PREDICTED: actin-related protein 7-like [Cucumis sativus] gi|449488840|ref|XP_004158188.1| PREDICTED: actin-related protein 7-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359807411|ref|NP_001241387.1| uncharacterized protein LOC100813266 [Glycine max] gi|255640268|gb|ACU20424.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query254
TAIR|locus:2101866363 ARP7 "AT3G60830" [Arabidopsis 0.996 0.696 0.877 1.4e-119
ASPGD|ASPL0000008752375 actA [Emericella nidulans (tax 0.964 0.653 0.442 5e-44
UNIPROTKB|F1MRD0375 ACTB "Actin, cytoplasmic 1, N- 0.968 0.656 0.440 5e-44
FB|FBgn0000042376 Act5C "Actin 5C" [Drosophila m 0.968 0.654 0.440 1e-43
FB|FBgn0000043376 Act42A "Actin 42A" [Drosophila 0.968 0.654 0.440 1.7e-43
UNIPROTKB|P60706375 ACTB "Actin, cytoplasmic 1" [G 0.968 0.656 0.436 1.7e-43
UNIPROTKB|Q5ZMQ2375 ACTG1 "Actin, cytoplasmic 2" [ 0.968 0.656 0.436 1.7e-43
UNIPROTKB|P60712375 ACTB "Actin, cytoplasmic 1" [B 0.968 0.656 0.436 1.7e-43
UNIPROTKB|P63258375 ACTG1 "Actin, cytoplasmic 2" [ 0.968 0.656 0.436 1.7e-43
UNIPROTKB|O18840375 ACTB "Actin, cytoplasmic 1" [C 0.968 0.656 0.436 1.7e-43
TAIR|locus:2101866 ARP7 "AT3G60830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1177 (419.4 bits), Expect = 1.4e-119, P = 1.4e-119
 Identities = 223/254 (87%), Positives = 242/254 (95%)

Query:     1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGG 60
             MFETFN+SGFY+SEQAVLSLYAVGRISGCTVDIGHGKIDIAPV+EGAVQHIAS+RFE+GG
Sbjct:   111 MFETFNVSGFYASEQAVLSLYAVGRISGCTVDIGHGKIDIAPVLEGAVQHIASKRFELGG 170

Query:    61 MDLTKLLAQELGKTNPSVNLSLYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQHTLPDGQ 120
              +LTKL AQELGKTNPS+NLS+ DVEKLKEQ++ CAEDE+AY+KTQ +CEIEQHTLPDGQ
Sbjct:   171 TELTKLFAQELGKTNPSMNLSMSDVEKLKEQYANCAEDEIAYKKTQ-NCEIEQHTLPDGQ 229

Query:   121 VIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM 180
             VI IG+ERY+VGEALFQPSILGLE HGIVEQLV  ISTVSSENHRQLLENTVLCGGTTSM
Sbjct:   230 VISIGRERYSVGEALFQPSILGLEEHGIVEQLVRIISTVSSENHRQLLENTVLCGGTTSM 289

Query:   181 TGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKAD 240
             TGFE RFQKEA LCSSAIRPTLVKPPEYMPENL +YSAW+GGAILAKVVFPQNQH+TKAD
Sbjct:   290 TGFESRFQKEANLCSSAIRPTLVKPPEYMPENLGMYSAWVGGAILAKVVFPQNQHVTKAD 349

Query:   241 YDESGPSVVHRKCF 254
             YDE+GPSVVHRKCF
Sbjct:   350 YDETGPSVVHRKCF 363
GO:0005200 "structural constituent of cytoskeleton" evidence=ISS
GO:0005737 "cytoplasm" evidence=ISM
GO:0005634 "nucleus" evidence=IDA
GO:0006325 "chromatin organization" evidence=TAS
GO:0009653 "anatomical structure morphogenesis" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP
GO:0010227 "floral organ abscission" evidence=IMP
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0009616 "virus induced gene silencing" evidence=RCA
GO:0009640 "photomorphogenesis" evidence=RCA
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0009845 "seed germination" evidence=RCA
GO:0009909 "regulation of flower development" evidence=RCA
GO:0009933 "meristem structural organization" evidence=RCA
GO:0010050 "vegetative phase change" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010182 "sugar mediated signaling pathway" evidence=RCA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
GO:0010564 "regulation of cell cycle process" evidence=RCA
GO:0016567 "protein ubiquitination" evidence=RCA
GO:0019915 "lipid storage" evidence=RCA
GO:0048366 "leaf development" evidence=RCA
GO:0048825 "cotyledon development" evidence=RCA
GO:0050826 "response to freezing" evidence=RCA
GO:0051301 "cell division" evidence=RCA
ASPGD|ASPL0000008752 actA [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|F1MRD0 ACTB "Actin, cytoplasmic 1, N-terminally processed" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
FB|FBgn0000042 Act5C "Actin 5C" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0000043 Act42A "Actin 42A" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P60706 ACTB "Actin, cytoplasmic 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZMQ2 ACTG1 "Actin, cytoplasmic 2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P60712 ACTB "Actin, cytoplasmic 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|P63258 ACTG1 "Actin, cytoplasmic 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|O18840 ACTB "Actin, cytoplasmic 1" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A2XMK6ARP7_ORYSINo assigned EC number0.75981.00.7055N/Ano
A3ANB5ARP7_ORYSJNo assigned EC number0.75981.00.7055yesno
Q8L4Y5ARP7_ARATHNo assigned EC number0.87790.99600.6969yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00028776001
SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (361 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
pfam00022367 pfam00022, Actin, Actin 6e-64
smart00268373 smart00268, ACTIN, Actin 1e-61
PTZ00004378 PTZ00004, PTZ00004, actin-2; Provisional 1e-58
PTZ00281376 PTZ00281, PTZ00281, actin; Provisional 3e-55
PTZ00466380 PTZ00466, PTZ00466, actin-like protein; Provisiona 1e-41
COG5277444 COG5277, COG5277, Actin and related proteins [Cyto 8e-40
PTZ00452375 PTZ00452, PTZ00452, actin; Provisional 5e-39
PTZ00280414 PTZ00280, PTZ00280, Actin-related protein 3; Provi 4e-27
cd00012185 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide- 9e-07
COG0849418 COG0849, ftsA, Cell division ATPase FtsA [Cell div 9e-06
TIGR01174371 TIGR01174, ftsA, cell division protein FtsA 7e-05
pfam14450159 pfam14450, FtsA, Cell division protein FtsA 6e-04
cd10227312 cd10227, ParM_like, Plasmid segregation protein Pa 0.001
>gnl|CDD|200935 pfam00022, Actin, Actin Back     alignment and domain information 
 Score =  203 bits (518), Expect = 6e-64
 Identities = 105/259 (40%), Positives = 138/259 (53%), Gaps = 12/259 (4%)

Query: 1   MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGG 60
           MFETF +   Y ++QAVLS YA GR +G  VD G G   + PV EG V   A RR ++ G
Sbjct: 116 MFETFGVPALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYEGYVLQKAIRRSDLAG 175

Query: 61  MDLTKLLAQELGKTNPSVNLS--LYDVEKLKEQFSCCAEDELAYEKTQKSCEIEQ--HTL 116
            DLT  L + L     S N       V  +KE  S C   +  +  T  S       + L
Sbjct: 176 DDLTDYLRKLLSSRTYSFNTYAEEEVVRDIKE--SLCYVSDDPFGDTAASSSPPTVSYEL 233

Query: 117 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 176
           PDG VI +G ER+ V E LF PS++G E+ GI E +  +I+    +    LL N V+ GG
Sbjct: 234 PDGYVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDVDLRPSLLANIVVTGG 293

Query: 177 TTSMTGFEDRFQKEAGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKV-VFPQNQH 235
           TT   GF +R +KE     + + P+ VK     P N   YSAWIGG+ILA +  F Q   
Sbjct: 294 TTLFPGFTERLEKEL----AQLAPSGVKVKIIAPPNERKYSAWIGGSILASLGTFQQ-MW 348

Query: 236 ITKADYDESGPSVVHRKCF 254
           ++K +Y+E G SVV RKCF
Sbjct: 349 VSKQEYEEHGSSVVERKCF 367

Length = 367
>gnl|CDD|214592 smart00268, ACTIN, Actin Back     alignment and domain information
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional Back     alignment and domain information
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional Back     alignment and domain information
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional Back     alignment and domain information
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional Back     alignment and domain information
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional Back     alignment and domain information
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of the sugar kinase/HSP70/actin superfamily Back     alignment and domain information
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA Back     alignment and domain information
>gnl|CDD|222760 pfam14450, FtsA, Cell division protein FtsA Back     alignment and domain information
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 254
PTZ00452375 actin; Provisional 100.0
PTZ00466380 actin-like protein; Provisional 100.0
PTZ00281376 actin; Provisional 100.0
KOG0676372 consensus Actin and related proteins [Cytoskeleton 100.0
PTZ00004378 actin-2; Provisional 100.0
PF00022393 Actin: Actin; InterPro: IPR004000 Actin [, ] is a 100.0
smart00268373 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki 100.0
PTZ00280414 Actin-related protein 3; Provisional 100.0
KOG0679426 consensus Actin-related protein - Arp4p/Act3p [Cyt 100.0
cd00012371 ACTIN Actin; An ubiquitous protein involved in the 100.0
KOG0677389 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0680400 consensus Actin-related protein - Arp6p [Cytoskele 100.0
COG5277444 Actin and related proteins [Cytoskeleton] 100.0
KOG0678415 consensus Actin-related protein Arp2/3 complex, su 100.0
KOG0681645 consensus Actin-related protein - Arp5p [Cytoskele 100.0
KOG0797618 consensus Actin-related protein [Cytoskeleton] 99.97
PRK13930335 rod shape-determining protein MreB; Provisional 99.91
TIGR00904333 mreB cell shape determining protein, MreB/Mrl fami 99.91
PRK13927334 rod shape-determining protein MreB; Provisional 99.89
PRK13929335 rod-share determining protein MreBH; Provisional 99.89
PRK13928336 rod shape-determining protein Mbl; Provisional 99.86
PF06723326 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Ba 99.85
COG1077342 MreB Actin-like ATPase involved in cell morphogene 99.62
TIGR02529239 EutJ ethanolamine utilization protein EutJ family 99.55
PRK15080267 ethanolamine utilization protein EutJ; Provisional 99.49
PRK09472420 ftsA cell division protein FtsA; Reviewed 99.48
TIGR01174371 ftsA cell division protein FtsA. This bacterial ce 99.41
COG0849418 ftsA Cell division ATPase FtsA [Cell division and 99.41
CHL00094 621 dnaK heat shock protein 70 99.12
PTZ00400 663 DnaK-type molecular chaperone; Provisional 99.12
PTZ00186 657 heat shock 70 kDa precursor protein; Provisional 99.09
PRK01433 595 hscA chaperone protein HscA; Provisional 99.08
TIGR01991 599 HscA Fe-S protein assembly chaperone HscA. The Hea 99.03
TIGR02350 595 prok_dnaK chaperone protein DnaK. Members of this 99.0
PLN03184 673 chloroplast Hsp70; Provisional 99.0
TIGR01175348 pilM type IV pilus assembly protein PilM. This pro 99.0
PRK13410 668 molecular chaperone DnaK; Provisional 98.99
PRK00290 627 dnaK molecular chaperone DnaK; Provisional 98.99
PRK13411 653 molecular chaperone DnaK; Provisional 98.98
PRK05183 616 hscA chaperone protein HscA; Provisional 98.96
PRK13917344 plasmid segregation protein ParM; Provisional 98.93
PTZ00009 653 heat shock 70 kDa protein; Provisional 98.9
PRK11678450 putative chaperone; Provisional 98.83
PF11104340 PilM_2: Type IV pilus assembly protein PilM;; PDB: 98.8
PF00012 602 HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho 98.78
COG4820277 EutJ Ethanolamine utilization protein, possible ch 98.7
TIGR03739320 PRTRC_D PRTRC system protein D. A novel genetic sy 98.32
COG4972354 PilM Tfp pilus assembly protein, ATPase PilM [Cell 98.26
COG0443 579 DnaK Molecular chaperone [Posttranslational modifi 98.18
PF06406318 StbA: StbA protein; InterPro: IPR009440 This entry 97.83
KOG0100 663 consensus Molecular chaperones GRP78/BiP/KAR2, HSP 97.82
TIGR00241248 CoA_E_activ CoA-substrate-specific enzyme activase 97.69
KOG0101 620 consensus Molecular chaperones HSP70/HSC70, HSP70 97.65
PRK10719 475 eutA reactivating factor for ethanolamine ammonia 96.9
KOG0102 640 consensus Molecular chaperones mortalin/PBP74/GRP7 96.6
COG1924396 Activator of 2-hydroxyglutaryl-CoA dehydratase (HS 96.09
PF08841332 DDR: Diol dehydratase reactivase ATPase-like domai 95.77
PF14450120 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B 95.49
KOG0104 902 consensus Molecular chaperones GRP170/SIL1, HSP70 95.25
TIGR02259432 benz_CoA_red_A benzoyl-CoA reductase, bcr type, su 94.75
KOG0103 727 consensus Molecular chaperones HSP105/HSP110/SSE1, 93.18
TIGR03286404 methan_mark_15 putative methanogenesis marker prot 93.09
TIGR03192293 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s 92.99
PF01968290 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPr 92.78
TIGR02261262 benz_CoA_red_D benzoyl-CoA reductase, bcr type, su 92.72
PRK13317277 pantothenate kinase; Provisional 91.42
PF02541285 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: I 91.02
PF07318343 DUF1464: Protein of unknown function (DUF1464); In 90.37
TIGR03123318 one_C_unchar_1 probable H4MPT-linked C1 transfer p 89.07
PF06277473 EutA: Ethanolamine utilisation protein EutA; Inter 87.54
COG1548330 Predicted transcriptional regulator/sugar kinase [ 86.67
COG2441374 Predicted butyrate kinase [Energy production and c 85.41
PRK11031 496 guanosine pentaphosphate phosphohydrolase; Provisi 80.99
TIGR03706300 exo_poly_only exopolyphosphatase. It appears that 80.12
>PTZ00452 actin; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3.7e-65  Score=452.41  Aligned_cols=248  Identities=36%  Similarity=0.584  Sum_probs=230.9

Q ss_pred             CCcccCCCeEEeechhhhhhhccCCceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--
Q 025352            1 MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--   78 (254)
Q Consensus         1 lFe~~~~~~v~~~~~~~~a~~~~g~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~--   78 (254)
                      |||+|++|++++.++++|++|++|++||+|||+|++.|+|+||+||++++++++++++||+++++++.++|..+++++  
T Consensus       123 lFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~  202 (375)
T PTZ00452        123 MFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTE  202 (375)
T ss_pred             HhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCC
Confidence            799999999999999999999999999999999999999999999999999999999999999999999998877655  


Q ss_pred             cccHHHHHHHHHhccccccc-hHHHHhhcCC-CCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHH
Q 025352           79 NLSLYDVEKLKEQFSCCAED-ELAYEKTQKS-CEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTI  156 (254)
Q Consensus        79 ~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~-~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i  156 (254)
                      ..+.++++++||++|||+.+ ++++.....+ .....|+||||+.+.++.||+.+||+||+|++++.+..+|+++|.++|
T Consensus       203 ~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si  282 (375)
T PTZ00452        203 PHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSI  282 (375)
T ss_pred             HHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHH
Confidence            23577899999999999998 5555433221 223789999999999999999999999999999999999999999999


Q ss_pred             hccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCcee
Q 025352          157 STVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH  235 (254)
Q Consensus       157 ~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~  235 (254)
                      .+||+|+|+.|++||||+||+|++|||.+||++|| ++.|...+++|..+++      |++++|+||||+|++++|+++|
T Consensus       283 ~~c~~d~r~~L~~nIvL~GG~Sl~~Gf~~RL~~El~~~~p~~~~v~v~~~~~------r~~~aW~GgSilasl~~f~~~~  356 (375)
T PTZ00452        283 KKCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPD------RRFSAWIGGSIQCTLSTQQPQW  356 (375)
T ss_pred             HhCCHhHHHHhhccEEEecccccccCHHHHHHHHHHHhCCCCceeEEecCCC------cceeEEECchhhcCccchhhhE
Confidence            99999999999999999999999999999999999 8888888999999988      9999999999999999999999


Q ss_pred             eeHHHHhhcCccchhcccC
Q 025352          236 ITKADYDESGPSVVHRKCF  254 (254)
Q Consensus       236 it~~ey~e~G~~~~~~k~~  254 (254)
                      |||+||+|+|+++++||||
T Consensus       357 vtk~eYeE~G~~i~~~k~~  375 (375)
T PTZ00452        357 IKRQEYDEQGPSIVHRKCF  375 (375)
T ss_pred             eEHHHHhccCcceeeeecC
Confidence            9999999999999999997

>PTZ00466 actin-like protein; Provisional Back     alignment and domain information
>PTZ00281 actin; Provisional Back     alignment and domain information
>KOG0676 consensus Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>PTZ00004 actin-2; Provisional Back     alignment and domain information
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton Back     alignment and domain information
>smart00268 ACTIN Actin Back     alignment and domain information
>PTZ00280 Actin-related protein 3; Provisional Back     alignment and domain information
>KOG0679 consensus Actin-related protein - Arp4p/Act3p [Cytoskeleton] Back     alignment and domain information
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton Back     alignment and domain information
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton] Back     alignment and domain information
>KOG0680 consensus Actin-related protein - Arp6p [Cytoskeleton] Back     alignment and domain information
>COG5277 Actin and related proteins [Cytoskeleton] Back     alignment and domain information
>KOG0678 consensus Actin-related protein Arp2/3 complex, subunit Arp3 [Cytoskeleton] Back     alignment and domain information
>KOG0681 consensus Actin-related protein - Arp5p [Cytoskeleton] Back     alignment and domain information
>KOG0797 consensus Actin-related protein [Cytoskeleton] Back     alignment and domain information
>PRK13930 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family Back     alignment and domain information
>PRK13927 rod shape-determining protein MreB; Provisional Back     alignment and domain information
>PRK13929 rod-share determining protein MreBH; Provisional Back     alignment and domain information
>PRK13928 rod shape-determining protein Mbl; Provisional Back     alignment and domain information
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes Back     alignment and domain information
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein Back     alignment and domain information
>PRK15080 ethanolamine utilization protein EutJ; Provisional Back     alignment and domain information
>PRK09472 ftsA cell division protein FtsA; Reviewed Back     alignment and domain information
>TIGR01174 ftsA cell division protein FtsA Back     alignment and domain information
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning] Back     alignment and domain information
>CHL00094 dnaK heat shock protein 70 Back     alignment and domain information
>PTZ00400 DnaK-type molecular chaperone; Provisional Back     alignment and domain information
>PTZ00186 heat shock 70 kDa precursor protein; Provisional Back     alignment and domain information
>PRK01433 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>TIGR01991 HscA Fe-S protein assembly chaperone HscA Back     alignment and domain information
>TIGR02350 prok_dnaK chaperone protein DnaK Back     alignment and domain information
>PLN03184 chloroplast Hsp70; Provisional Back     alignment and domain information
>TIGR01175 pilM type IV pilus assembly protein PilM Back     alignment and domain information
>PRK13410 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK00290 dnaK molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK13411 molecular chaperone DnaK; Provisional Back     alignment and domain information
>PRK05183 hscA chaperone protein HscA; Provisional Back     alignment and domain information
>PRK13917 plasmid segregation protein ParM; Provisional Back     alignment and domain information
>PTZ00009 heat shock 70 kDa protein; Provisional Back     alignment and domain information
>PRK11678 putative chaperone; Provisional Back     alignment and domain information
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A Back     alignment and domain information
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins Back     alignment and domain information
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03739 PRTRC_D PRTRC system protein D Back     alignment and domain information
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion] Back     alignment and domain information
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA [] Back     alignment and domain information
>KOG0100 consensus Molecular chaperones GRP78/BiP/KAR2, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative Back     alignment and domain information
>KOG0101 consensus Molecular chaperones HSP70/HSC70, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional Back     alignment and domain information
>KOG0102 consensus Molecular chaperones mortalin/PBP74/GRP75, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism] Back     alignment and domain information
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ] Back     alignment and domain information
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T Back     alignment and domain information
>KOG0104 consensus Molecular chaperones GRP170/SIL1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A Back     alignment and domain information
>KOG0103 consensus Molecular chaperones HSP105/HSP110/SSE1, HSP70 superfamily [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15 Back     alignment and domain information
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit Back     alignment and domain information
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3 Back     alignment and domain information
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D Back     alignment and domain information
>PRK13317 pantothenate kinase; Provisional Back     alignment and domain information
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3 Back     alignment and domain information
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length Back     alignment and domain information
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein Back     alignment and domain information
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon Back     alignment and domain information
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2441 Predicted butyrate kinase [Energy production and conversion] Back     alignment and domain information
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional Back     alignment and domain information
>TIGR03706 exo_poly_only exopolyphosphatase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
2oan_A375 Structure Of Oxidized Beta-Actin Length = 375 1e-47
3u4l_A375 Cryocooled Bovine Profilin:actin Crystal Structure 3e-47
2btf_A375 The Structure Of Crystalline Profilin-Beta-Actin Le 3e-47
3byh_A374 Model Of Actin-Fimbrin Abd2 Complex Length = 374 3e-47
1d4x_A375 Crystal Structure Of Caenorhabditis Elegans Mg-Atp 8e-47
1yvn_A375 The Yeast Actin Val 159 Asn Mutant Complex With Hum 2e-46
1yag_A375 Structure Of The Yeast Actin-human Gelsolin Segment 3e-46
3mn5_A359 Structures Of Actin-Bound Wh2 Domains Of Spire And 3e-46
1lcu_A371 Polylysine Induces An Antiparallel Actin Dimer That 3e-46
2gwj_A371 Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form 4e-46
1t44_A370 Structural Basis Of Actin Sequestration By Thymosin 4e-46
3g37_O376 Cryo-Em Structure Of Actin Filament In The Presence 4e-46
1qz5_A375 Structure Of Rabbit Actin In Complex With Kabiramid 4e-46
1kxp_A375 Crystal Structure Of Human Vitamin D-binding Protei 4e-46
2hf3_A374 Crystal Structure Of Monomeric Actin In The Adp Bou 4e-46
4efh_A375 Acanthamoeba Actin Complex With Spir Domain D Lengt 4e-46
1eqy_A377 Complex Between Rabbit Muscle Alpha-Actin: Human Ge 5e-46
4b1v_A376 Structure Of The Phactr1 Rpel-N Domain Bound To G-A 5e-46
1ijj_A377 The X-Ray Crystal Structure Of The Complex Between 5e-46
3eks_A375 Crystal Structure Of Monomeric Actin Bound To Cytoc 5e-46
3w3d_A374 Crystal Structure Of Smooth Muscle G Actin Dnase I 7e-46
1nlv_A375 Crystal Structure Of Dictyostelium Discoideum Actin 7e-46
3a5m_C375 Crystal Structure Of A Dictyostelium P109i Mg2+-Act 1e-45
3ci5_A375 Complex Of Phosphorylated Dictyostelium Discoideum 1e-45
3chw_A375 Complex Of Dictyostelium Discoideum Actin With Prof 1e-45
3a5l_C375 Crystal Structure Of A Dictyostelium P109a Mg2+-Act 1e-45
1c0f_A368 Crystal Structure Of Dictyostelium Caatp-Actin In C 1e-45
1dej_A375 Crystal Structure Of A DictyosteliumTETRAHYMENA CHI 1e-45
1c0g_A375 Crystal Structure Of 1:1 Complex Between Gelsolin S 3e-45
1atn_A373 Atomic Structure Of The Actin:dnase I Complex Lengt 1e-43
2w49_D372 Isometrically Contracting Insect Asynchronous Fligh 1e-43
3b63_A365 Actin Filament Model In The Extended Form Of Acroms 3e-43
3b63_L365 Actin Filament Model In The Extended Form Of Acroms 4e-43
3m6g_A371 Crystal Structure Of Actin In Complex With Lobophor 6e-43
3b63_C365 Actin Filament Model In The Extended Form Of Acroms 7e-43
3b63_B364 Actin Filament Model In The Extended Form Of Acroms 4e-42
3b63_E365 Actin Filament Model In The Extended Form Of Acroms 4e-42
3b63_D357 Actin Filament Model In The Extended Form Of Acroms 4e-39
3b63_F357 Actin Filament Model In The Extended Form Of Acroms 9e-38
2p9k_B394 Crystal Structure Of Bovine Arp23 COMPLEX CO-Crysta 4e-30
1k8k_B394 Crystal Structure Of Arp23 COMPLEX Length = 394 4e-30
1k8k_A418 Crystal Structure Of Arp23 COMPLEX Length = 418 3e-14
3dwl_A427 Crystal Structure Of Fission Yeast Arp2/3 Complex L 3e-12
4i6m_B439 Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex 1e-08
>pdb|2OAN|A Chain A, Structure Of Oxidized Beta-Actin Length = 375 Back     alignment and structure 
Iteration: 1

 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 112/260 (43%), Positives = 143/260 (55%), Gaps = 13/260 (5%)
Query: 1   MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGG 60
           MFETFN    Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G
Sbjct: 123 MFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYALPHAILRLDLAG 182
Query: 61  MDLTKLLAQELGKTNPSVNLSLYD--VEKLKEQFSCCA---EDELAYEKTQKSCEIEQHT 115
            DLT  L + L +   S   +     V  +KE+    A   E E+A   +  S E + + 
Sbjct: 183 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAASSSSLE-KSYE 241
Query: 116 LPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCG 175
           LPDGQVI IG ER+   EALFQPS LG+E+ GI E   ++I     +  + L  NTVL G
Sbjct: 242 LPDGQVITIGNERFRCPEALFQPSFLGMESXGIHETTFNSIMKCDVDIRKDLYANTVLSG 301
Query: 176 GTTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQ 234
           GTT   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q  
Sbjct: 302 GTTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQM 355
Query: 235 HITKADYDESGPSVVHRKCF 254
            I+K +YDESGPS+VHRKCF
Sbjct: 356 WISKQEYDESGPSIVHRKCF 375
>pdb|3U4L|A Chain A, Cryocooled Bovine Profilin:actin Crystal Structure To 2.4 A Length = 375 Back     alignment and structure
>pdb|2BTF|A Chain A, The Structure Of Crystalline Profilin-Beta-Actin Length = 375 Back     alignment and structure
>pdb|3BYH|A Chain A, Model Of Actin-Fimbrin Abd2 Complex Length = 374 Back     alignment and structure
>pdb|1D4X|A Chain A, Crystal Structure Of Caenorhabditis Elegans Mg-Atp Actin Complexed With Human Gelsolin Segment 1 At 1.75 A Resolution Length = 375 Back     alignment and structure
>pdb|1YVN|A Chain A, The Yeast Actin Val 159 Asn Mutant Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1YAG|A Chain A, Structure Of The Yeast Actin-human Gelsolin Segment 1 Complex Length = 375 Back     alignment and structure
>pdb|3MN5|A Chain A, Structures Of Actin-Bound Wh2 Domains Of Spire And The Implication For Filament Nucleation Length = 359 Back     alignment and structure
>pdb|1LCU|A Chain A, Polylysine Induces An Antiparallel Actin Dimer That Nucleates Filament Assembly: Crystal Structure At 3.5 A Resolution Length = 371 Back     alignment and structure
>pdb|2GWJ|A Chain A, Spvb Adp-Ribosylated Actin: Hexagonal Crystal Form Length = 371 Back     alignment and structure
>pdb|1T44|A Chain A, Structural Basis Of Actin Sequestration By Thymosin-B4: Implications For Arp23 ACTIVATION Length = 370 Back     alignment and structure
>pdb|3G37|O Chain O, Cryo-Em Structure Of Actin Filament In The Presence Of Phosphate Length = 376 Back     alignment and structure
>pdb|1QZ5|A Chain A, Structure Of Rabbit Actin In Complex With Kabiramide C Length = 375 Back     alignment and structure
>pdb|1KXP|A Chain A, Crystal Structure Of Human Vitamin D-binding Protein In Complex With Skeletal Actin Length = 375 Back     alignment and structure
>pdb|2HF3|A Chain A, Crystal Structure Of Monomeric Actin In The Adp Bound State Length = 374 Back     alignment and structure
>pdb|4EFH|A Chain A, Acanthamoeba Actin Complex With Spir Domain D Length = 375 Back     alignment and structure
>pdb|1EQY|A Chain A, Complex Between Rabbit Muscle Alpha-Actin: Human Gelsolin Domain 1 Length = 377 Back     alignment and structure
>pdb|4B1V|A Chain A, Structure Of The Phactr1 Rpel-N Domain Bound To G-Actin Length = 376 Back     alignment and structure
>pdb|1IJJ|A Chain A, The X-Ray Crystal Structure Of The Complex Between Rabbit Skeletal Muscle Actin And Latrunculin A At 2.85 A Resolution Length = 377 Back     alignment and structure
>pdb|3EKS|A Chain A, Crystal Structure Of Monomeric Actin Bound To Cytochalasin D Length = 375 Back     alignment and structure
>pdb|3W3D|A Chain A, Crystal Structure Of Smooth Muscle G Actin Dnase I Complex Length = 374 Back     alignment and structure
>pdb|1NLV|A Chain A, Crystal Structure Of Dictyostelium Discoideum Actin Complexed With Ca Atp And Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3A5M|C Chain C, Crystal Structure Of A Dictyostelium P109i Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|3CI5|A Chain A, Complex Of Phosphorylated Dictyostelium Discoideum Actin With Gelsolin Length = 375 Back     alignment and structure
>pdb|3CHW|A Chain A, Complex Of Dictyostelium Discoideum Actin With Profilin And The Last Poly-Pro Of Human Vasp Length = 375 Back     alignment and structure
>pdb|3A5L|C Chain C, Crystal Structure Of A Dictyostelium P109a Mg2+-Actin In Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0F|A Chain A, Crystal Structure Of Dictyostelium Caatp-Actin In Complex With Gelsolin Segment 1 Length = 368 Back     alignment and structure
>pdb|1DEJ|A Chain A, Crystal Structure Of A DictyosteliumTETRAHYMENA CHIMERA Actin (Mutant 646: Q228kT229AA230YA231KS232EE360H) IN Complex With Human Gelsolin Segment 1 Length = 375 Back     alignment and structure
>pdb|1C0G|A Chain A, Crystal Structure Of 1:1 Complex Between Gelsolin Segment 1 And A DictyosteliumTETRAHYMENA CHIMERA ACTIN (MUTANT 228: Q228kT229AA230YE360H) Length = 375 Back     alignment and structure
>pdb|1ATN|A Chain A, Atomic Structure Of The Actin:dnase I Complex Length = 373 Back     alignment and structure
>pdb|2W49|D Chain D, Isometrically Contracting Insect Asynchronous Flight Muscle Length = 372 Back     alignment and structure
>pdb|3B63|A Chain A, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|L Chain L, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3M6G|A Chain A, Crystal Structure Of Actin In Complex With Lobophorolide Length = 371 Back     alignment and structure
>pdb|3B63|C Chain C, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|B Chain B, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 364 Back     alignment and structure
>pdb|3B63|E Chain E, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 365 Back     alignment and structure
>pdb|3B63|D Chain D, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|3B63|F Chain F, Actin Filament Model In The Extended Form Of Acromsomal Bundle In The Limulus Sperm Length = 357 Back     alignment and structure
>pdb|2P9K|B Chain B, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized With Atp And Crosslinked With Glutaraldehyde Length = 394 Back     alignment and structure
>pdb|1K8K|B Chain B, Crystal Structure Of Arp23 COMPLEX Length = 394 Back     alignment and structure
>pdb|1K8K|A Chain A, Crystal Structure Of Arp23 COMPLEX Length = 418 Back     alignment and structure
>pdb|3DWL|A Chain A, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking The Arp2 Subunit Length = 427 Back     alignment and structure
>pdb|4I6M|B Chain B, Structure Of Arp7-arp9-snf2(hsa)-rtt102 Subcomplex Of Swi/snf Chromatin Remodeler Length = 439 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query254
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 3e-85
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 1e-84
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 3e-72
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 5e-67
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 3e-44
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 1e-30
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 1e-09
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 8e-06
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Length = 375 Back     alignment and structure
 Score =  257 bits (659), Expect = 3e-85
 Identities = 107/259 (41%), Positives = 139/259 (53%), Gaps = 11/259 (4%)

Query: 1   MFETFNISGFYSSEQAVLSLYAVGRISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGG 60
           MFETFN+   Y + QAVLSLYA GR +G  +D G G     P+ EG     A  R ++ G
Sbjct: 123 MFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAG 182

Query: 61  MDLTKLLAQELGKTNPSVNLS--LYDVEKLKEQFSCCAED-ELAYEKTQKSCEIE-QHTL 116
            DLT  L + L +   S   +     V  +KE+    A D E        S  +E  + L
Sbjct: 183 RDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYEL 242

Query: 117 PDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGG 176
           PDGQVI IG ER+   E LFQPS +G+E+ GI E   ++I     +  + L  N V+ GG
Sbjct: 243 PDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGG 302

Query: 177 TTSMTGFEDRFQKE-AGLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQH 235
           TT   G  DR QKE   L  S ++  ++ PPE        YS WIGG+ILA +   Q   
Sbjct: 303 TTMYPGIADRMQKEITALAPSTMKIKIIAPPERK------YSVWIGGSILASLSTFQQMW 356

Query: 236 ITKADYDESGPSVVHRKCF 254
           ITK +YDE+GPS+VHRKCF
Sbjct: 357 ITKQEYDEAGPSIVHRKCF 375
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Length = 394 Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Length = 418 Back     alignment and structure
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Length = 427 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Length = 498 Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Length = 377 Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Length = 419 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
3dwl_A427 Actin-related protein 3; propellor, actin-binding, 100.0
3qb0_A498 Actin-related protein 4; actin fold, ATP binding, 100.0
2fxu_A375 Alpha-actin-1, actin, alpha skeletal muscle; actin 100.0
1k8k_B394 ARP2, actin-like protein 2; beta-propeller, struct 100.0
4fo0_A593 Actin-related protein 8; chromatin remodeling, nuc 100.0
1k8k_A418 ARP3, actin-like protein 3, actin-2; beta-propelle 100.0
4am6_A655 Actin-like protein ARP8; nuclear protein, chromati 100.0
1jce_A344 ROD shape-determining protein MREB; MBL, actin, HS 99.89
3h1q_A272 Ethanolamine utilization protein EUTJ; ethanolamin 99.7
1dkg_D383 Molecular chaperone DNAK; HSP70, GRPE, nucleotide 99.69
2v7y_A 509 Chaperone protein DNAK; HSP70, heat shock protein, 99.62
3qfu_A394 78 kDa glucose-regulated protein homolog; HSP70, K 99.52
2ych_A377 Competence protein PILM; cell cycle, type IV pilus 99.48
4a2a_A419 Cell division protein FTSA, putative; cell cycle, 99.48
3i33_A404 Heat shock-related 70 kDa protein 2; protein-ADP c 99.43
1yuw_A 554 Heat shock cognate 71 kDa protein; chaperone; 2.60 99.38
2kho_A 605 Heat shock protein 70; molecular chaperone, HSP70, 99.33
3d2f_A 675 Heat shock protein homolog SSE1; nucleotide exchan 99.27
4gni_A409 Putative heat shock protein; HSP70-type ATPase, AT 99.26
3js6_A355 Uncharacterized PARM protein; partition, segregati 99.12
2zgy_A320 Plasmid segregation protein PARM; plasmid partitio 99.06
4apw_A329 ALP12; actin-like protein; 19.70A {Clostridium tet 99.03
4b9q_A 605 Chaperone protein DNAK; HET: ATP; 2.40A {Escherich 98.96
2fsj_A346 Hypothetical protein TA0583; actin homologs, archa 98.93
1nbw_A607 Glycerol dehydratase reactivase alpha subunit; mol 98.85
2d0o_A610 DIOL dehydratase-reactivating factor large subunit 98.84
4ehu_A276 Activator of 2-hydroxyisocaproyl-COA dehydratase; 97.27
1hux_A270 Activator of (R)-2-hydroxyglutaryl-COA dehydratase 95.9
2ews_A287 Pantothenate kinase; PANK, structural genomics, st 95.34
2i7n_A360 Pantothenate kinase 1; PANK, transferase; HET: ACO 94.79
3cet_A334 Conserved archaeal protein; Q6M145, MRR63, NESG, X 93.47
2gup_A292 ROK family protein; sugar kinase, streptococcus pn 92.15
1t6c_A315 Exopolyphosphatase; alpha/beta protein, actin-like 91.56
3r8e_A321 Hypothetical sugar kinase; ribonuclease H-like mot 90.16
3mdq_A315 Exopolyphosphatase; structural genomics, joint cen 89.56
3cer_A343 Possible exopolyphosphatase-like protein; NESG, BL 88.52
1u6z_A 513 Exopolyphosphatase; alpha/beta protein, askha (ace 84.66
3hi0_A 508 Putative exopolyphosphatase; 17739545, structural 84.48
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} Back     alignment and structure
Probab=100.00  E-value=6e-62  Score=437.29  Aligned_cols=247  Identities=28%  Similarity=0.449  Sum_probs=215.2

Q ss_pred             CCcccCCCeEEeechhhhhhhccC--------CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHh
Q 025352            1 MFETFNISGFYSSEQAVLSLYAVG--------RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELG   72 (254)
Q Consensus         1 lFe~~~~~~v~~~~~~~~a~~~~g--------~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~   72 (254)
                      |||+|++|+++++.+++||+|++|        .+||+|||+|++.|+|+||++|+++.++++++++||+++++++.++|.
T Consensus       146 ~FE~~~~p~v~l~~~~vla~~a~G~~~~~~~~~~tglVVDiG~g~T~v~PV~~G~~l~~~~~rl~~gG~~lt~~L~~lL~  225 (427)
T 3dwl_A          146 MFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSLLR  225 (427)
T ss_dssp             HTTTTCCSEEEEEEHHHHHHHGGGGSTTTCSCCCCEEEEEESSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHTTC
T ss_pred             HHHhccCceeeecchHHHHHHhcCCcccccCCCceEEEEECCCCceEEEEEECCEEehhhheeccccHHHHHHHHHHHHH
Confidence            699999999999999999999998        689999999999999999999999999999999999999999999998


Q ss_pred             ccCCCccccHHHHHHHHHhccccccc-hHHHHhhcCCC-CceeEEC--CCCc--EEEecchhhcccccccCcccCCCC-C
Q 025352           73 KTNPSVNLSLYDVEKLKEQFSCCAED-ELAYEKTQKSC-EIEQHTL--PDGQ--VIRIGKERYTVGEALFQPSILGLE-A  145 (254)
Q Consensus        73 ~~~~~~~~~~~~~e~iK~~~~~v~~~-~~~~~~~~~~~-~~~~~~l--pdg~--~v~i~~~~~~~~E~lF~p~~~~~~-~  145 (254)
                      .++.. ..+.++++++|+++|||+.+ ++++.+....+ ....|++  |||+  .+.++.|||++||.||+|++++.+ .
T Consensus       226 ~~~~~-~~~~~~~~~IKe~~cyv~~d~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~~~g~~~~  304 (427)
T 3dwl_A          226 DRNEP-DSSLKTAERIKEECCYVCPDIVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFL  304 (427)
T ss_dssp             ---------CHHHHHHHHHHCCCCSCHHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGGGTCSSCC
T ss_pred             HcCCC-chhHHHHHHHHHhcCcccCCHHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCchhcCCccC
Confidence            87765 55778999999999999999 77776543322 2366777  8997  788899999999999999999988 5


Q ss_pred             CCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCccchHHHHHHhh-hcC--------------CCccceEEeCCCCCCC
Q 025352          146 HGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLC--------------SSAIRPTLVKPPEYMP  210 (254)
Q Consensus       146 ~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i~G~~erl~~eL-~~~--------------~~~~~v~v~~~~~~~~  210 (254)
                      .+|+++|.++|++||+|+|+.|++||||+||+|++|||.+||++|| ++.              |+.++++|+++|+   
T Consensus       305 ~gI~~~i~~sI~~c~~dlr~~L~~nIvLtGG~sl~~G~~~RL~~El~~l~~~~~~~~~~~~~~~p~~~~vkv~~~~~---  381 (427)
T 3dwl_A          305 TPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKR---  381 (427)
T ss_dssp             SCHHHHHHHHHHTSCHHHHHHHHHCEEEESGGGCSTTTTHHHHHHHHHHHTTC-------------CCCCCEECCTT---
T ss_pred             CCccHHHHHHHHhCCHHHHHHHhCCEEEEccCcCCCChHHHHHHHHHHhhhhhccccccccccCCCceeEEEecCCc---
Confidence            8999999999999999999999999999999999999999999999 665              5677899999998   


Q ss_pred             cCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchhcccC
Q 025352          211 ENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVHRKCF  254 (254)
Q Consensus       211 ~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~~k~~  254 (254)
                         |.+++|+||||+|++++|+++||||+||+|+|+++++||++
T Consensus       382 ---r~~s~WiGGSilasl~~f~~~witk~EYeE~G~~iv~~~~~  422 (427)
T 3dwl_A          382 ---QRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQI  422 (427)
T ss_dssp             ---CTTHHHHHHHHHHHSTTHHHHSEEHHHHHHSCGGGGSCCCC
T ss_pred             ---cccceecCceeeccccchhheeEEHHHHhhhChHhheeccc
Confidence               99999999999999999999999999999999999999974
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae} Back     alignment and structure
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ... Back     alignment and structure
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B* Back     alignment and structure
>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens} Back     alignment and structure
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A Back     alignment and structure
>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A* Back     alignment and structure
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A Back     alignment and structure
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid} Back     alignment and structure
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 Back     alignment and structure
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426} Back     alignment and structure
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus} Back     alignment and structure
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A* Back     alignment and structure
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ... Back     alignment and structure
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A* Back     alignment and structure
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli} Back     alignment and structure
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A* Back     alignment and structure
>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var} Back     alignment and structure
>3js6_A Uncharacterized PARM protein; partition, segregation, filament, unknown function; 1.95A {Staphylococcus aureus} Back     alignment and structure
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A Back     alignment and structure
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani} Back     alignment and structure
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D Back     alignment and structure
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB, PARM, structural PROT; 1.90A {Thermoplasma acidophilum} SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A* Back     alignment and structure
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 Back     alignment and structure
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A Back     alignment and structure
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A Back     alignment and structure
>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5 Back     alignment and structure
>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14 Back     alignment and structure
>2i7n_A Pantothenate kinase 1; PANK, transferase; HET: ACO; 1.90A {Homo sapiens} SCOP: c.55.1.14 c.55.1.14 PDB: 3smp_A* 3sms_A* 2i7p_A* 3mk6_A* Back     alignment and structure
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A Back     alignment and structure
>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10 Back     alignment and structure
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A* Back     alignment and structure
>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii} Back     alignment and structure
>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii} Back     alignment and structure
>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705} Back     alignment and structure
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A* Back     alignment and structure
>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 254
d2fxua2225 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxI 3e-60
d1k8ka2258 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 2e-49
d1k8kb1190 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 1e-37
d1k8ka1158 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 { 2e-06
d2fxua1140 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 3e-06
d1e4ft2191 c.55.1.1 (T:200-390) Cell division protein FtsA {T 1e-04
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 225 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  188 bits (477), Expect = 3e-60
 Identities = 86/231 (37%), Positives = 116/231 (50%), Gaps = 11/231 (4%)

Query: 25  RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSVNLS--L 82
           R +G  +D G G     P+ EG     A  R ++ G DLT  L + L +   S   +   
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAER 60

Query: 83  YDVEKLKEQFSCCAEDELAYEKT--QKSCEIEQHTLPDGQVIRIGKERYTVGEALFQPSI 140
             V  +KE+    A D      T    S   + + LPDGQVI IG ER+   E LFQPS 
Sbjct: 61  EIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSF 120

Query: 141 LGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSMTGFEDRFQKEA-GLCSSAIR 199
           +G+E+ GI E   ++I     +  + L  N V+ GGTT   G  DR QKE   L  S ++
Sbjct: 121 IGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMK 180

Query: 200 PTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH 250
             ++ PPE        YS WIGG+ILA +   Q   ITK +YDE+GPS+VH
Sbjct: 181 IKIIAPPERK------YSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH 225
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 258 Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Length = 190 Back     information, alignment and structure
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Length = 158 Back     information, alignment and structure
>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]} Length = 140 Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Length = 191 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query254
d2fxua2225 Actin {Cow (Bos taurus) [TaxId: 9913]} 100.0
d1k8ka2258 Actin-related protein 3, Arp3 {Cow (Bos taurus) [T 100.0
d1k8kb1190 Actin-related protein 2, Arp2 {Cow (Bos taurus) [T 100.0
d1e4ft2191 Cell division protein FtsA {Thermotoga maritima [T 99.55
d1jcea2196 Prokaryotic actin homolog MreB {Thermotoga maritim 99.34
d1dkgd2198 Heat shock protein 70kDa, ATPase fragment {Escheri 98.9
d1bupa2193 Heat shock protein 70kDa, ATPase fragment {Cow (Bo 98.61
d2zgya2163 Plasmid segregation protein ParM {Escherichia coli 98.56
d2fsja1161 Hypothetical protein Ta0583 {Archaeon Thermoplasma 98.29
d2d0oa3203 Diol dehydratase-reactivating factor large subunit 95.76
d1nbwa3202 ATPase domain of the glycerol dehydratase reactiva 95.58
d1t6ca2180 Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6 92.02
d1huxa_259 Hydroxyglutaryl-CoA dehydratase component A {Acida 91.96
d1u6za3177 Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5 91.91
d2aa4a2170 N-acetylmannosamine kinase NanK {Escherichia coli 89.44
d2ap1a1186 Putative regulator protein YcfX {Salmonella typhim 88.79
d1xc3a2176 Putative fructokinase YhdR {Bacillus subtilis [Tax 82.9
d2hoea2169 N-acetylglucosamine kinase {Thermotoga maritima [T 80.95
d2gupa2175 Hypothetical protein SP2142 {Streptococcus pneumon 80.89
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=7.3e-58  Score=377.20  Aligned_cols=220  Identities=39%  Similarity=0.603  Sum_probs=204.0

Q ss_pred             CceEEEEEcCCCceeEEEeecceeeccccEEeecCHHHHHHHHHHHHhccCCCc--cccHHHHHHHHHhccccccc-hHH
Q 025352           25 RISGCTVDIGHGKIDIAPVIEGAVQHIASRRFEVGGMDLTKLLAQELGKTNPSV--NLSLYDVEKLKEQFSCCAED-ELA  101 (254)
Q Consensus        25 ~~tglVVDiG~~~t~v~pv~dG~~~~~~~~~~~~gG~~i~~~l~~~l~~~~~~~--~~~~~~~e~iK~~~~~v~~~-~~~  101 (254)
                      ++||||||+|++.|+|+||+||++++++++++++||+++++++.++|.+++...  ..+.+.++++|+.+|+++.+ ..+
T Consensus         1 rtTglVVDiG~~~t~v~PV~eG~~l~~~~~~~~~GG~~lt~~l~~~L~~~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e   80 (225)
T d2fxua2           1 RTTGIVLDSGDGVTHNVPIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENE   80 (225)
T ss_dssp             CSSEEEEEECSSCEEEEEEETTEECGGGCEEESCCHHHHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHCCCCSSHHHH
T ss_pred             CCEEEEEEcCCCcEEEEEEECCEEchhceEEEECcHHHHHHHHHHHHhhccCCcCCHHHHHHHHHHHHHHhhcccchhHH
Confidence            589999999999999999999999999999999999999999999999887665  44677899999999999999 555


Q ss_pred             HHhhcCC-CCceeEECCCCcEEEecchhhcccccccCcccCCCCCCCHHHHHHHHHhccCHHHHHHhHcCeEeccCccCc
Q 025352          102 YEKTQKS-CEIEQHTLPDGQVIRIGKERYTVGEALFQPSILGLEAHGIVEQLVHTISTVSSENHRQLLENTVLCGGTTSM  180 (254)
Q Consensus       102 ~~~~~~~-~~~~~~~lpdg~~v~i~~~~~~~~E~lF~p~~~~~~~~~l~~~i~~~i~~~~~d~~~~l~~nIvl~GG~s~i  180 (254)
                      ..+.... .....|.+|||+.+.++++|+.+||.||+|..++.+..+|+++|.++|.+||+|+|+.|++||+|+||+|++
T Consensus        81 ~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~~~~~~~gl~~~i~~sI~~~~~d~r~~l~~nIvl~GG~s~~  160 (225)
T d2fxua2          81 MATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDIDIRKDLYANNVMSGGTTMY  160 (225)
T ss_dssp             HHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGGGGTCCSCCHHHHHHHHHHTSCHHHHHHHHTCEEEESGGGCS
T ss_pred             HhhcccCcccceeEECCCCCEEEEchHhccccHhhcCccccCCccCChhHHHHHHhhcCCcchhhhhhcCEEEeCCcccC
Confidence            5444332 233899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchHHHHHHhh-hcCCCccceEEeCCCCCCCcCCCcceeeehhhhhhccCCCCceeeeHHHHhhcCccchh
Q 025352          181 TGFEDRFQKEA-GLCSSAIRPTLVKPPEYMPENLTLYSAWIGGAILAKVVFPQNQHITKADYDESGPSVVH  250 (254)
Q Consensus       181 ~G~~erl~~eL-~~~~~~~~v~v~~~~~~~~~~~~~~~~w~G~si~a~l~~~~~~~it~~ey~e~G~~~~~  250 (254)
                      |||.+||++|| ++.+...+++|+.+++      |++++|+||||+|++++|+++||||+||+|+|+++||
T Consensus       161 ~G~~~RL~~El~~~~~~~~~~~v~~~~~------~~~~aW~Ggsilasl~~f~~~~itk~eY~E~G~~ivh  225 (225)
T d2fxua2         161 PGIADRMQKEITALAPSTMKIKIIAPPE------RKYSVWIGGSILASLSTFQQMWITKQEYDEAGPSIVH  225 (225)
T ss_dssp             TTHHHHHHHHHHHHSCTTCCCCEECCTT------TTSHHHHHHHHHHHCGGGGGGSEEHHHHHHHCGGGGC
T ss_pred             CchhHHHHhHHHHhhccccceEEecCCC------CCeeEEeCHhhhhcCccHhhEEEEHHHHHhhCccccC
Confidence            99999999999 8888888999999998      9999999999999999999999999999999999986
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]} Back     information, alignment and structure
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]} Back     information, alignment and structure
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]} Back     information, alignment and structure
>d1u6za3 c.55.1.8 (A:136-312) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2aa4a2 c.55.1.10 (A:120-289) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ap1a1 c.55.1.10 (A:118-303) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1xc3a2 c.55.1.10 (A:119-294) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2hoea2 c.55.1.10 (A:200-368) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gupa2 c.55.1.10 (A:115-289) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure