Citrus Sinensis ID: 025360

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MMQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccEEEEcccccccccHHHHHccccccccccccHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHcccccccEEEEEcccccccccccccHHHHHHHHHcccEEEEEEccccccccccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHccHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHHHHHcccccccEEEEcccccccccEEEccHHHHHHHHHcccEEEEEccccHHHccccccccEEEEcccccEEcc
Coil and Loop (DISEMBL)
MMQPIKEVLLFLLLAIFSkatgtkdypnsrysmpgdgasyCLSWRLAVEANNVRAWRTVPTQCLRYVESYmiggqydrDVELVVEQILCYVNEVvlsgdgmdawildvddtcisnvyyykgkrygcdpydpagfrawalkggcpaipGVLVLFNKLIESGLKVILVTgrdeetfgqvtrdnlhnqgfvgyERLIMRTAAdkgknavtYKSEIRKQLLEEGYRIWGNIGDqwsdlqgectgnrtfklpnpmyfvp
Flexible Loop (DISEMBL)
MMQPIKEVLLFLLLAIFSKatgtkdypnsrysMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETfgqvtrdnlhnqgfvGYERLIMRTAadkgknavtykSEIRKQLLEEGYRIWGNIGDQWSDLQGEctgnrtfklpnpmyfvp
Low Complexity Region (SEG)
MMQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP
Disordered region (IsUnstruct)
*****KEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPN******
Disordered Region (DISOPRED)
****IKE*LLFLLLAIFSKAT******************YCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKG**********RK*LLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP
Disordered Region (DISEMBL)
MMQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP
Disordered Region (DISPRO)
*MQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MMQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
P27061	255	Acid phosphatase 1 OS=Sol	N/A	no	0.956	0.952	0.407	9e-53
P10743	254	Stem 31 kDa glycoprotein	no	no	0.826	0.826	0.411	4e-43
P15490	254	Stem 28 kDa glycoprotein	no	no	0.826	0.826	0.4	5e-41
P10742	291	Stem 31 kDa glycoprotein	no	no	0.811	0.707	0.402	5e-39
O82122	265	Vegetative storage protei	no	no	0.830	0.796	0.393	5e-38
O49195	270	Vegetative storage protei	no	no	0.830	0.781	0.384	2e-37
O04195	283	Uncharacterized protein A	no	no	0.724	0.650	0.245	9e-08
P26093	274	Lipoprotein E OS=Haemophi	yes	no	0.484	0.448	0.289	0.0001

>sp|P27061|PPA1_SOLLC Acid phosphatase 1 OS=Solanum lycopersicum GN=APS1 PE=2 SV=1

 Score =  207 bits (526), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 103/253 (40%), Positives = 146/253 (57%), Gaps = 10/253 (3%)

Query: 10  LFLLLAIFSKATGTKDYPNSRYSMPG---------DGASYCLSWRLAVEANNVRAWRTVP 60
           +F+ L + + A GT++  +  +  P               C +WR  VE NN+  W+T+P
Sbjct: 3   IFVFLVLLTVAIGTENLNSHVFPRPLIIEYPEKQLRDELKCTTWRFVVETNNLSPWKTIP 62

Query: 61  TQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYK 120
            +C  YV+ YM+G  Y  +++ V ++   Y   V L  DG D WI DVD+T +SN+ YY 
Sbjct: 63  EECADYVKEYMVGPGYKMEIDRVSDEAGEYAKSVDLGDDGRDVWIFDVDETLLSNLPYYS 122

Query: 121 GKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180
             RYG + +D   F  W   G  PA+   L L+ ++++ G KV L+TGR E     VT +
Sbjct: 123 DHRYGLEVFDDVEFDKWVENGTAPALGSSLKLYQEVLKLGFKVFLLTGRSER-HRSVTVE 181

Query: 181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTG 240
           NL N GF  + +LI+R + D GK A TYKSE R  ++EEG+RI GN GDQWSDL G    
Sbjct: 182 NLMNAGFHDWHKLILRGSDDHGKTATTYKSERRNAMVEEGFRIVGNSGDQWSDLLGSSMS 241

Query: 241 NRTFKLPNPMYFV 253
            R+FKLPNPMY++
Sbjct: 242 YRSFKLPNPMYYI 254

Solanum lycopersicum (taxid: 4081)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 2

>sp|P10743|VSPB_SOYBN Stem 31 kDa glycoprotein OS=Glycine max GN=VSPB PE=2 SV=1

 Score =  174 bits (442), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 88/214 (41%), Positives = 135/214 (63%), Gaps = 4/214 (1%)

Query: 41  CLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDG 100
           C S+RLAVEA+N+RA++T+P +C+   + Y+ G Q+  D + V +Q   Y +E  +  + 
Sbjct: 43  CASFRLAVEAHNIRAFKTIPEECVEPTKDYINGEQFRSDSKTVNQQAFFYASEREVHHN- 101

Query: 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG 160
            D +I  +D+T +SN+ YY+   YG + ++   +  W  KG  PA+P  L  +NKL+  G
Sbjct: 102 -DIFIFGIDNTVLSNIPYYEKHGYGVEEFNETLYDEWVNKGDAPALPETLKNYNKLLSLG 160

Query: 161 LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG 220
            K++ ++GR  +    VT  NL   GF  +E+LI++       NA++YKS +R+ LL +G
Sbjct: 161 FKIVFLSGRYLDKMA-VTEANLKKAGFHTWEQLILKDPHLITPNALSYKSAMRENLLRQG 219

Query: 221 YRIWGNIGDQWSDLQGECTG-NRTFKLPNPMYFV 253
           YRI G IGDQWSDL G+  G +RTFKLPNPMY++
Sbjct: 220 YRIVGIIGDQWSDLLGDHRGESRTFKLPNPMYYI 253

May function as somatic storage protein during early seedling development.

Glycine max (taxid: 3847)

>sp|P15490|VSPA_SOYBN Stem 28 kDa glycoprotein OS=Glycine max GN=VSPA PE=2 SV=1

 Score =  167 bits (424), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 86/215 (40%), Positives = 128/215 (59%), Gaps = 5/215 (2%)

Query: 41  CLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDG 100
           C SWRLAVEA+N+  + T+P +C+   + Y+ G QY  D + V +Q   Y  +  L    
Sbjct: 42  CASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARD--LEVHP 99

Query: 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG 160
            D ++  +D T +SN+ YYK   YG + ++   +  W  KG  PA+P  L  +NKL+  G
Sbjct: 100 KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLG 159

Query: 161 LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGK-NAVTYKSEIRKQLLEE 219
            K+I ++GR  +    VT  NL   G+  +E+LI++   D    NAV+YK+  R++L+ +
Sbjct: 160 FKIIFLSGRTLDK-QAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQ 218

Query: 220 GYRIWGNIGDQWSDLQGECTG-NRTFKLPNPMYFV 253
           GY I G IGDQWSDL G   G +RTFKLPNP+Y++
Sbjct: 219 GYNIVGIIGDQWSDLLGGHRGESRTFKLPNPLYYI 253

May function as somatic storage protein during early seedling development.

Glycine max (taxid: 3847)

>sp|P10742|S25K_SOYBN Stem 31 kDa glycoprotein (Fragment) OS=Glycine max GN=VSP25 PE=2 SV=2

 Score =  161 bits (407), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 85/211 (40%), Positives = 124/211 (58%), Gaps = 5/211 (2%)

Query: 41  CLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDG 100
           C SWRLAVEA+N+  + T+P +C+   + Y+ G QY  D + V +Q   Y  +  L    
Sbjct: 39  CASWRLAVEAHNIFGFETIPEECVEATKEYIHGEQYRSDSKTVNQQAYFYARD--LEVHP 96

Query: 101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG 160
            D ++  +D T +SN+ YYK   YG + ++   +  W  KG  PA+P  L  +NKL+  G
Sbjct: 97  KDTFVFSIDGTVLSNIPYYKKHGYGVEKFNSTLYDEWVNKGNAPALPETLKNYNKLVSLG 156

Query: 161 LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGK-NAVTYKSEIRKQLLEE 219
            K+I ++GR  +    VT  NL   G+  +E+LI++   D    NAV+YK+  R++L+ +
Sbjct: 157 FKIIFLSGRTLDK-QAVTEANLKKAGYHTWEKLILKDPQDPSTPNAVSYKTAAREKLIRQ 215

Query: 220 GYRIWGNIGDQWSDLQGECTG-NRTFKLPNP 249
           GY I G IGDQWSDL G   G +RTFKLPNP
Sbjct: 216 GYNIVGIIGDQWSDLLGGHRGESRTFKLPNP 246

May function as somatic storage protein during early seedling development.

Glycine max (taxid: 3847)

>sp|O82122|VSP2_ARATH Vegetative storage protein 2 OS=Arabidopsis thaliana GN=VSP2 PE=1 SV=1

 Score =  157 bits (398), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 85/216 (39%), Positives = 125/216 (57%), Gaps = 5/216 (2%)

Query: 41  CLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGG-QYDRDVELVVEQILCYVNEVVLSGD 99
           C SW L VE +N+  + TVP  C  YVE Y+I   QY  D + V ++   Y   + L  D
Sbjct: 52  CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111

Query: 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGC-PAIPGVLVLFNKLIE 158
            ++ WI D+DDT +S++ YY    YG +  DP  +  W   G   P +P  L L+  +IE
Sbjct: 112 TVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIE 171

Query: 159 SGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE 218
            G++ I+++ R  + +  VT DNL   G   ++ LI++      +  V YKS++RK L++
Sbjct: 172 LGIEPIILSDR-WKLWKNVTLDNLEAAGVTYWKHLILKPNGSNLRQVV-YKSKVRKSLVK 229

Query: 219 EGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
           +GY I GNIGDQW+DL  +  G R FKLPNP+Y+VP
Sbjct: 230 KGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYVP 264

May function as somatic storage protein during early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|O49195|VSP1_ARATH Vegetative storage protein 1 OS=Arabidopsis thaliana GN=VSP1 PE=2 SV=2

 Score =  156 bits (394), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 83/216 (38%), Positives = 125/216 (57%), Gaps = 5/216 (2%)

Query: 41  CLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGG-QYDRDVELVVEQILCYVNEVVLSGD 99
           C SW L VE +N+  + TVP  C  YVE Y+I   QY  D + V ++   Y   + L  D
Sbjct: 57  CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116

Query: 100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKG-GCPAIPGVLVLFNKLIE 158
            ++ WI D+DDT +S++ YY    YG +   P  + +W   G   P +P  L L+  L+E
Sbjct: 117 TVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLE 176

Query: 159 SGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE 218
            G++ I+++ R ++   +VT +NL   G   ++ LI++    K    V YKS++R  L++
Sbjct: 177 LGIEPIIISDRWKK-LSEVTVENLKAVGVTKWKHLILKPNGSK-LTQVVYKSKVRNSLVK 234

Query: 219 EGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
           +GY I GNIGDQW+DL  +  G R FKLPNP+Y+VP
Sbjct: 235 KGYNIVGNIGDQWADLVEDTPG-RVFKLPNPLYYVP 269

May function as somatic storage protein during early seedling development.

Arabidopsis thaliana (taxid: 3702)

>sp|O04195|Y2992_ARATH Uncharacterized protein At2g39920 OS=Arabidopsis thaliana GN=At2g39920 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 32/216 (14%)

Query: 40  YCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGD 99
           YC    L  + N++     +P  C       +  G Y R++   ++  L Y   +    D
Sbjct: 87  YCKILSLHSQLNSLDEESELPLLCRDVALHRIKQGIYLRELNFTIQMALTYFQTIKPMND 146

Query: 100 GMDAWILDVDDTCI--SNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLI 157
             D  ++D+DDT +   + YY K         + A  +   L         +L L++KL 
Sbjct: 147 NCDVVVIDIDDTNLLEQDSYYMK-------YIEEAKHQKSIL---------ILALYSKLR 190

Query: 158 ESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLL 217
             G  ++L++ R  ET    T + L ++G+  +  LIM     +           +K+ L
Sbjct: 191 SQGYSMVLLSRR-PETERNATIEQLKSRGYSDWSHLIMSREDTR-----------QKEEL 238

Query: 218 EEGYRIWGNIGDQWSDLQGECT--GNRTFKLPNPMY 251
           E G+R+ G IG+    L+G+      R FKLP+  Y
Sbjct: 239 ERGHRVIGVIGNHMDVLRGQWNWQSKRLFKLPSLTY 274

Arabidopsis thaliana (taxid: 3702)

>sp|P26093|HEL_HAEIN Lipoprotein E OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hel PE=1 SV=2

 Score = 47.0 bits (110), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)

Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
           D+D+T + N  Y   +     P+D   +  W       A+PG +   N +     KV  V
Sbjct: 84  DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 143

Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
           T R + T    T D++   GF G E        DK   A  + +EI KQ    GY I   
Sbjct: 144 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 198

Query: 227 IGDQWSDL 234
           +GD   D 
Sbjct: 199 VGDNLDDF 206


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.321    0.140    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 105,955,998
Number of Sequences: 539616
Number of extensions: 4639654
Number of successful extensions: 8721
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 8696
Number of HSP's gapped (non-prelim): 13
length of query: 254
length of database: 191,569,459
effective HSP length: 115
effective length of query: 139
effective length of database: 129,513,619
effective search space: 18002393041
effective search space used: 18002393041
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)

Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
255582012	260	Acid phosphatase 1 precursor, putative [	1.0	0.976	0.742	1e-111
224139396	253	predicted protein [Populus trichocarpa]	0.992	0.996	0.752	1e-110
225439113	290	PREDICTED: acid phosphatase 1-like [Viti	0.988	0.865	0.699	1e-103
147800094	251	hypothetical protein VITISV_033474 [Viti	0.988	1.0	0.699	1e-103
15224907	251	HAD superfamily, subfamily IIIB acid pho	0.956	0.968	0.702	1e-101
297823747	251	acid phosphatase class B family protein	0.956	0.968	0.694	1e-100
356506451	269	PREDICTED: acid phosphatase 1-like [Glyc	0.893	0.843	0.735	3e-99
224087921	222	predicted protein [Populus trichocarpa]	0.874	1.0	0.756	3e-99
356560099	265	PREDICTED: acid phosphatase 1-like [Glyc	0.948	0.909	0.697	1e-98
388517971	259	unknown [Lotus japonicus]	1.0	0.980	0.660	5e-98

>gi|255582012|ref|XP_002531803.1| Acid phosphatase 1 precursor, putative [Ricinus communis] gi|223528537|gb|EEF30560.1| Acid phosphatase 1 precursor, putative [Ricinus communis]

 Score =  406 bits (1044), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 190/256 (74%), Positives = 218/256 (85%), Gaps = 2/256 (0%)

Query: 1   MMQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPG-DGA-SYCLSWRLAVEANNVRAWRT 58
           M Q + EV +   LAIFSKA    + P SR ++P  DG   YCLSWRLAVEANNVR WRT
Sbjct: 5   MAQRLHEVFMLFFLAIFSKAAAGLNKPYSRANLPPVDGPFDYCLSWRLAVEANNVRGWRT 64

Query: 59  VPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYY 118
           VP QCLRY+E+YMIGGQYDRD++ +VEQI  YV+E+V SGD MDAWILDVDDTCISNV+Y
Sbjct: 65  VPAQCLRYIEAYMIGGQYDRDLDFIVEQIWSYVSEIVRSGDPMDAWILDVDDTCISNVFY 124

Query: 119 YKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT 178
           YKGKRYGC+PYDPAGF+AWALKGGCPAIP +L LF  L++SG KV LVTGRD+ET GQVT
Sbjct: 125 YKGKRYGCEPYDPAGFKAWALKGGCPAIPSMLRLFRHLVDSGFKVFLVTGRDQETLGQVT 184

Query: 179 RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC 238
            DNLH+QGF+GYERLI+RTAA+KG+ AV +KS IRKQL+EEGYRIWGN+GDQWSDLQGE 
Sbjct: 185 ADNLHDQGFIGYERLILRTAANKGQGAVVFKSAIRKQLVEEGYRIWGNVGDQWSDLQGEF 244

Query: 239 TGNRTFKLPNPMYFVP 254
           TGNRTFK+PNPMYFVP
Sbjct: 245 TGNRTFKIPNPMYFVP 260

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139396|ref|XP_002323092.1| predicted protein [Populus trichocarpa] gi|222867722|gb|EEF04853.1| predicted protein [Populus trichocarpa]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 192/255 (75%), Positives = 221/255 (86%), Gaps = 3/255 (1%)

Query: 1   MMQPIKEVLL-FLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTV 59
           M+  ++EVLL F  LAI  KATG + Y  SR  +  + A+YCLSWRLAVEANNVRAWRTV
Sbjct: 1   MVHRLREVLLLFSFLAILPKATGVEAY--SRGGVIQESAAYCLSWRLAVEANNVRAWRTV 58

Query: 60  PTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYY 119
           P+QCLRYVE+YM+GGQYDRD++L+V+QIL YVNE+V S DGMDAWILDVDDTCISNV+YY
Sbjct: 59  PSQCLRYVETYMLGGQYDRDLDLIVDQILSYVNEIVPSSDGMDAWILDVDDTCISNVFYY 118

Query: 120 KGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR 179
           +GKRYGCDPYDPAGFRAWALKGGCPAIP VL LF+ L++SG KV LVTGRD+E  GQVT 
Sbjct: 119 RGKRYGCDPYDPAGFRAWALKGGCPAIPAVLGLFDYLVQSGFKVFLVTGRDKEALGQVTI 178

Query: 180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECT 239
           DNLH QGF+GYER+I+RTA   G++AV YKSEIR+QL +EGYRIWGN+GDQWSDLQGEC 
Sbjct: 179 DNLHIQGFIGYERIILRTAEFIGQSAVAYKSEIRRQLEKEGYRIWGNVGDQWSDLQGECL 238

Query: 240 GNRTFKLPNPMYFVP 254
           GNRTFKLPNPMYFVP
Sbjct: 239 GNRTFKLPNPMYFVP 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439113|ref|XP_002266395.1| PREDICTED: acid phosphatase 1-like [Vitis vinifera]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/253 (69%), Positives = 208/253 (82%), Gaps = 2/253 (0%)

Query: 2   MQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPT 61
           M+ ++EV++ + LAI S A   K  P  R ++  D  SYCLSWR++VEANN+  WRTVP 
Sbjct: 40  MRGVREVVVIVFLAICSMANAIK--PCPRATVVRDEVSYCLSWRMSVEANNMAGWRTVPM 97

Query: 62  QCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKG 121
           QCL Y++ YMIGGQYDRD+  + +QIL YV  +VLS DGMDAWILDVDDTCISN++YYKG
Sbjct: 98  QCLPYIQGYMIGGQYDRDMAFIADQILSYVKGIVLSDDGMDAWILDVDDTCISNLFYYKG 157

Query: 122 KRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181
           KR+GCDPYDP GF+AWALKGGCPAI  VL LF+KL+ESG KVIL+TGRDEET GQVT DN
Sbjct: 158 KRFGCDPYDPKGFKAWALKGGCPAISAVLGLFDKLVESGFKVILLTGRDEETLGQVTVDN 217

Query: 182 LHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGN 241
           LHNQGF+GYERLI+R A  KG+ A+ YKS IRKQL+EEGYRIWGN+GDQWSDLQG+  GN
Sbjct: 218 LHNQGFIGYERLILRRAEHKGQGAIQYKSGIRKQLVEEGYRIWGNVGDQWSDLQGDYKGN 277

Query: 242 RTFKLPNPMYFVP 254
           R FKLPNPMYFVP
Sbjct: 278 RAFKLPNPMYFVP 290

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147800094|emb|CAN66541.1| hypothetical protein VITISV_033474 [Vitis vinifera] gi|296085845|emb|CBI31169.3| unnamed protein product [Vitis vinifera]

 Score =  379 bits (973), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 177/253 (69%), Positives = 208/253 (82%), Gaps = 2/253 (0%)

Query: 2   MQPIKEVLLFLLLAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPT 61
           M+ ++EV++ + LAI S A   K  P  R ++  D  SYCLSWR++VEANN+  WRTVP 
Sbjct: 1   MRGVREVVVIVFLAICSMANAIK--PCPRATVVRDEVSYCLSWRMSVEANNMAGWRTVPM 58

Query: 62  QCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKG 121
           QCL Y++ YMIGGQYDRD+  + +QIL YV  +VLS DGMDAWILDVDDTCISN++YYKG
Sbjct: 59  QCLPYIQGYMIGGQYDRDMAFIADQILSYVKGIVLSDDGMDAWILDVDDTCISNLFYYKG 118

Query: 122 KRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN 181
           KR+GCDPYDP GF+AWALKGGCPAI  VL LF+KL+ESG KVIL+TGRDEET GQVT DN
Sbjct: 119 KRFGCDPYDPKGFKAWALKGGCPAISAVLGLFDKLVESGFKVILLTGRDEETLGQVTVDN 178

Query: 182 LHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGN 241
           LHNQGF+GYERLI+R A  KG+ A+ YKS IRKQL+EEGYRIWGN+GDQWSDLQG+  GN
Sbjct: 179 LHNQGFIGYERLILRRAEHKGQGAIQYKSGIRKQLVEEGYRIWGNVGDQWSDLQGDYKGN 238

Query: 242 RTFKLPNPMYFVP 254
           R FKLPNPMYFVP
Sbjct: 239 RAFKLPNPMYFVP 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224907|ref|NP_181394.1| HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana] gi|3786012|gb|AAC67358.1| putative acid phosphatase [Arabidopsis thaliana] gi|330254460|gb|AEC09554.1| HAD superfamily, subfamily IIIB acid phosphatase [Arabidopsis thaliana]

 Score =  374 bits (959), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 177/252 (70%), Positives = 203/252 (80%), Gaps = 9/252 (3%)

Query: 6   KEVLLFLLLAIFSKATGTKDYPNSRYSMPGDG---ASYCLSWRLAVEANNVRAWRTVPTQ 62
           +E LLF+ + I S AT T  +      MP DG   ASYCLSWRLAVE NNVRAWR VP Q
Sbjct: 6   RETLLFIFITISSVATSTSTW------MPMDGNYGASYCLSWRLAVETNNVRAWRIVPLQ 59

Query: 63  CLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGK 122
           CLRYVE YM+ GQYDRDV+L V+QI  Y+NE++L GDGMDAWILDVDDTC SNV+YY+ K
Sbjct: 60  CLRYVEVYMLAGQYDRDVQLTVDQIKVYLNEIILPGDGMDAWILDVDDTCFSNVFYYRLK 119

Query: 123 RYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL 182
           RYGCDPYDP GFR WA+KG  PAI  VL LF KLIE+G KV LVTGRDEET  Q T +NL
Sbjct: 120 RYGCDPYDPTGFRTWAMKGESPAIQPVLELFYKLIETGFKVFLVTGRDEETLRQATLENL 179

Query: 183 HNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNR 242
           HNQGF GYERLIMRTA +K ++A TYK+ IRK+++EEGYRIWGN+GDQWSDLQGE +G+R
Sbjct: 180 HNQGFTGYERLIMRTADNKRQSATTYKTRIRKEMMEEGYRIWGNVGDQWSDLQGEYSGDR 239

Query: 243 TFKLPNPMYFVP 254
           TFK+PNPMYFVP
Sbjct: 240 TFKIPNPMYFVP 251

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297823747|ref|XP_002879756.1| acid phosphatase class B family protein [Arabidopsis lyrata subsp. lyrata] gi|297325595|gb|EFH56015.1| acid phosphatase class B family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  370 bits (951), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 175/252 (69%), Positives = 201/252 (79%), Gaps = 9/252 (3%)

Query: 6   KEVLLFLLLAIFSKATGTKDYPNSRYSMPGDG---ASYCLSWRLAVEANNVRAWRTVPTQ 62
           +E LL + L I S A+GT  +      MP DG    SYCLSWRLAVE NNVRAWR VP Q
Sbjct: 6   RETLLLIFLTISSVASGTSPW------MPMDGNYGTSYCLSWRLAVETNNVRAWRIVPLQ 59

Query: 63  CLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGK 122
           CL YVE YM+ GQYDRDV+L V+QI  Y+NE+ L GDGMDAWILDVDDTC SNV+YY+ K
Sbjct: 60  CLHYVEVYMLAGQYDRDVQLTVDQIRVYLNEITLPGDGMDAWILDVDDTCFSNVFYYRLK 119

Query: 123 RYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL 182
           RYGCDPYDP GFR WA+KG  PAI  VL LFNKLIE+G KV L+TGRDEET  Q T +NL
Sbjct: 120 RYGCDPYDPTGFRTWAMKGESPAIQPVLELFNKLIETGFKVFLITGRDEETLRQATVENL 179

Query: 183 HNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNR 242
           HNQGF GYERLIMRTA +K ++A TYK+ +RK+++EEGYRIWGN+GDQWSDLQGE TG+R
Sbjct: 180 HNQGFTGYERLIMRTADNKRQSATTYKTRVRKEMMEEGYRIWGNVGDQWSDLQGEYTGDR 239

Query: 243 TFKLPNPMYFVP 254
           TFK+PNPMYFVP
Sbjct: 240 TFKIPNPMYFVP 251

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506451|ref|XP_003521996.1| PREDICTED: acid phosphatase 1-like [Glycine max]

 Score =  367 bits (942), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 167/227 (73%), Positives = 194/227 (85%)

Query: 28  NSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQI 87
           +S  S  G   S+CLSWRLAVEANNV AW TVP QC RYVE+YMI GQYDRD++L+VE+I
Sbjct: 43  SSGSSDEGGAISFCLSWRLAVEANNVVAWPTVPPQCSRYVETYMINGQYDRDLDLIVEEI 102

Query: 88  LCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIP 147
           L YVN+  L GD MDAWILDVDDTCISN+YYYKGK+YGCDPYDP  FR WA+KGGCPAIP
Sbjct: 103 LAYVNQTFLLGDAMDAWILDVDDTCISNIYYYKGKKYGCDPYDPFAFRTWAMKGGCPAIP 162

Query: 148 GVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVT 207
            VL LFN L+  G KV L+TGRDEET GQVTR+NLHNQGF+GYERLI+R++A KGK+A+ 
Sbjct: 163 SVLRLFNILVNKGFKVFLLTGRDEETLGQVTRNNLHNQGFIGYERLILRSSAYKGKSAMK 222

Query: 208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
           YKS++RKQL ++GYRIWGN+GDQWSD+QG+  GNRTFKLPNPMYFVP
Sbjct: 223 YKSDVRKQLQDQGYRIWGNVGDQWSDIQGDYLGNRTFKLPNPMYFVP 269

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087921|ref|XP_002308264.1| predicted protein [Populus trichocarpa] gi|222854240|gb|EEE91787.1| predicted protein [Populus trichocarpa]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 168/222 (75%), Positives = 197/222 (88%)

Query: 33  MPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVN 92
           M  +GASY LSWRL VEANNVRAWRTVP+QCLRYVE+YM GGQYDRD++L+V+Q+L Y+N
Sbjct: 1   MIPEGASYYLSWRLDVEANNVRAWRTVPSQCLRYVEAYMRGGQYDRDLDLIVDQVLSYIN 60

Query: 93  EVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVL 152
           E+  S DGMDAWILDVDDTCISN+ YY+ KRYGCDP+DPAGF+AWALKGGC AIP VL L
Sbjct: 61  EIDPSNDGMDAWILDVDDTCISNLLYYREKRYGCDPFDPAGFKAWALKGGCQAIPAVLGL 120

Query: 153 FNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEI 212
           FN L+++G KV L+TGRD+ET GQVT DNLH+QGF+GYERLI++TA  KG+NA+ YKSEI
Sbjct: 121 FNNLVQNGFKVFLITGRDQETLGQVTSDNLHDQGFIGYERLILKTAGFKGQNALAYKSEI 180

Query: 213 RKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
           R++L +EGYRIWGN+GDQWSDLQGEC GNRTFKLPN MYFVP
Sbjct: 181 RRRLEKEGYRIWGNVGDQWSDLQGECLGNRTFKLPNLMYFVP 222

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560099|ref|XP_003548333.1| PREDICTED: acid phosphatase 1-like [Glycine max]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 168/241 (69%), Positives = 199/241 (82%)

Query: 14  LAIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIG 73
           ++I      ++   +S  S  G   S+CLSWRLAVEANNV AW TVP QC RYVE+YMI 
Sbjct: 25  MSITGGHNKSRGKESSGSSDEGGAISFCLSWRLAVEANNVVAWPTVPPQCSRYVETYMIN 84

Query: 74  GQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAG 133
           GQYDRD++L+VE IL YVN+  L GD MDAWILDVDDTCISN+YYYKGK+YGCDPYDP  
Sbjct: 85  GQYDRDLDLIVEVILAYVNQTFLLGDAMDAWILDVDDTCISNIYYYKGKKYGCDPYDPFS 144

Query: 134 FRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERL 193
           FR WA+KGGCPAIP VL LFN L++ G KV L+TGRDEET GQVTR+NLHNQGF+GYERL
Sbjct: 145 FRTWAMKGGCPAIPSVLRLFNILVDKGFKVFLLTGRDEETLGQVTRNNLHNQGFIGYERL 204

Query: 194 IMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFV 253
           I+R++A KGK+A+ YKS++RKQL ++GYRIWGN+GDQWSD+QG+  GNRTFKLPNPMYFV
Sbjct: 205 ILRSSAYKGKSAMKYKSDVRKQLEDQGYRIWGNVGDQWSDIQGDYLGNRTFKLPNPMYFV 264

Query: 254 P 254
           P
Sbjct: 265 P 265

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517971|gb|AFK47047.1| unknown [Lotus japonicus]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 171/259 (66%), Positives = 198/259 (76%), Gaps = 5/259 (1%)

Query: 1   MMQPIKEVLLFLLLAI-FSKATGTKDYP----NSRYSMPGDGASYCLSWRLAVEANNVRA 55
           M   + E L+  LLA+ FSK    + +     N   S       +CLSWRL VE NNV  
Sbjct: 1   MAHGVGETLVLFLLAVYFSKGMSIRHHHESNDNESTSSSFIDGRFCLSWRLGVETNNVLL 60

Query: 56  WRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISN 115
           WRTVPTQCL+YVE Y+I GQYDRD+EL++EQ L YV+ + L  DGMD WILDVDDTC+SN
Sbjct: 61  WRTVPTQCLQYVEDYLIHGQYDRDLELIMEQALSYVDAIPLVADGMDGWILDVDDTCLSN 120

Query: 116 VYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFG 175
           +YYYK K+YGCDPYDP  FRAWA+KGGC A+P VL LFNKLI+ G KV L+TGRDE T G
Sbjct: 121 IYYYKSKKYGCDPYDPLAFRAWAMKGGCTALPPVLTLFNKLIDKGFKVFLLTGRDEGTLG 180

Query: 176 QVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQ 235
           QVT DNLHNQGF GYERL+MRT   KGK+A TYKS+IRKQL +EGYRIWGN+GDQWSDLQ
Sbjct: 181 QVTIDNLHNQGFTGYERLMMRTMVYKGKSAATYKSDIRKQLEDEGYRIWGNVGDQWSDLQ 240

Query: 236 GECTGNRTFKLPNPMYFVP 254
           G  +GNRTFK+PNPMYFVP
Sbjct: 241 GNSSGNRTFKIPNPMYFVP 259

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2064128	251	AT2G38600 [Arabidopsis thalian	0.964	0.976	0.704	5.9e-96
TAIR|locus:2118314	255	AT4G29260 [Arabidopsis thalian	0.870	0.866	0.470	2.9e-55
TAIR|locus:2118329	256	AT4G29270 [Arabidopsis thalian	0.940	0.933	0.449	2.1e-54
TAIR|locus:2117338	260	AT4G25150 [Arabidopsis thalian	0.842	0.823	0.465	1.9e-51
TAIR|locus:2176267	257	AT5G51260 [Arabidopsis thalian	0.964	0.953	0.409	3.6e-50
TAIR|locus:2024102	271	AT1G04040 [Arabidopsis thalian	0.854	0.800	0.387	2.2e-41
TAIR|locus:2172447	272	AT5G44020 [Arabidopsis thalian	0.838	0.783	0.371	1.6e-40
TAIR|locus:2184580	265	VSP2 "AT5G24770" [Arabidopsis	0.830	0.796	0.398	1.3e-38
TAIR|locus:2184585	270	VSP1 "AT5G24780" [Arabidopsis	0.830	0.781	0.388	7e-38
TIGR_CMR|CBU_0335	221	CBU_0335 "acid phosphatase, cl	0.696	0.800	0.320	7.7e-16

TAIR|locus:2064128 AT2G38600 [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 176/250 (70%), Positives = 203/250 (81%)

Query:     6 KEVLLFLLLAIFSKATGTKDYPNSRYSMPGD-GASYCLSWRLAVEANNVRAWRTVPTQCL 64
             +E LLF+ + I S AT T  +      M G+ GASYCLSWRLAVE NNVRAWR VP QCL
Sbjct:     6 RETLLFIFITISSVATSTSTW----MPMDGNYGASYCLSWRLAVETNNVRAWRIVPLQCL 61

Query:    65 RYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRY 124
             RYVE YM+ GQYDRDV+L V+QI  Y+NE++L GDGMDAWILDVDDTC SNV+YY+ KRY
Sbjct:    62 RYVEVYMLAGQYDRDVQLTVDQIKVYLNEIILPGDGMDAWILDVDDTCFSNVFYYRLKRY 121

Query:   125 GCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN 184
             GCDPYDP GFR WA+KG  PAI  VL LF KLIE+G KV LVTGRDEET  Q T +NLHN
Sbjct:   122 GCDPYDPTGFRTWAMKGESPAIQPVLELFYKLIETGFKVFLVTGRDEETLRQATLENLHN 181

Query:   185 QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTF 244
             QGF GYERLIMRTA +K ++A TYK+ IRK+++EEGYRIWGN+GDQWSDLQGE +G+RTF
Sbjct:   182 QGFTGYERLIMRTADNKRQSATTYKTRIRKEMMEEGYRIWGNVGDQWSDLQGEYSGDRTF 241

Query:   245 KLPNPMYFVP 254
             K+PNPMYFVP
Sbjct:   242 KIPNPMYFVP 251

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

TAIR|locus:2118314 AT4G29260 [Arabidopsis thaliana (taxid:3702)]

 Score = 570 (205.7 bits), Expect = 2.9e-55, P = 2.9e-55
 Identities = 105/223 (47%), Positives = 144/223 (64%)

Query:    33 MPG-DGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYV 91
             +PG DG+ YC SWRLA E NNV  W  +P+ C+  V  Y+ G Q+  D  ++V+  L + 
Sbjct:    34 LPGSDGSRYCDSWRLAAETNNVGTWDLIPSICVDSVAEYLNGDQFLSDYSVIVDYALAFA 93

Query:    92 NEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLV 151
               V +SGDG D WI D+D+T ++N+ YYK   YG +PYD   F  W  +G  PA    L 
Sbjct:    94 KSVEISGDGKDVWIFDIDETLLTNIDYYKAHGYGSEPYDDNKFSEWVEQGTAPAFDASLR 153

Query:   152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSE 211
             L+N L + G  +IL+TGRDE      T  NL + G+ G+ERL++R   D+GK+A  YKSE
Sbjct:   154 LYNALKKLGFTIILLTGRDEHQRTS-TETNLRDAGYSGWERLLLRGPNDQGKSATNYKSE 212

Query:   212 IRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
              R +L+EEG++I GN GDQWSDLQG    +R+FK+PNPMY++P
Sbjct:   213 QRSKLIEEGFKIRGNSGDQWSDLQGFAVADRSFKVPNPMYYIP 255

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2118329 AT4G29270 [Arabidopsis thaliana (taxid:3702)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 112/249 (44%), Positives = 151/249 (60%)

Query:     8 VLLFLLL---AIFSKATGTKDYPNSRYSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCL 64
             V LF +L   AI S+A      P S        ASYC SWRLA E NNV  W+ +P+QC 
Sbjct:    14 VALFTVLINPAISSRAASFIKLPRSSI------ASYCESWRLAAETNNVGPWKVIPSQCE 67

Query:    65 RYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRY 124
              Y+++Y+ GGQ+D+D ++V    + Y   V + GDG DAW+ D+D+T +SN+ YYK   Y
Sbjct:    68 NYIKNYINGGQFDKDYDVVASYAIDYAKTVKVGGDGKDAWVFDIDETLLSNIEYYKANGY 127

Query:   125 GCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN 184
             G +PYD   +     KG  P     L L+  L + G  +IL+TGRDE     VT  NL +
Sbjct:   128 GSEPYDSIKYNEVVEKGKDPGYDASLRLYKALKKLGFTIILLTGRDEG-HRSVTEKNLRD 186

Query:   185 QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTF 244
              G+ G+ RL++R   D+GK A  YKSE R Q+++EGY I GN GDQWSDL G    +R+F
Sbjct:   187 AGYFGWNRLLLRGQNDQGKTATQYKSEQRSQVVKEGYTIHGNTGDQWSDLLGFAVASRSF 246

Query:   245 KLPNPMYFV 253
             K+PNPMY+V
Sbjct:   247 KVPNPMYYV 255

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

TAIR|locus:2117338 AT4G25150 [Arabidopsis thaliana (taxid:3702)]

 Score = 534 (193.0 bits), Expect = 1.9e-51, P = 1.9e-51
 Identities = 100/215 (46%), Positives = 137/215 (63%)

Query:    40 YCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGD 99
             +C SWR A E NN+  W+T+P +C  YV+ Y++G  Y  DVE V E+   Y +    +GD
Sbjct:    47 HCTSWRFAAETNNLAPWKTIPAECADYVKDYLMGEGYVVDVERVSEEAKVYASSFESNGD 106

Query:   100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES 159
             G D WI D+D+T +SN+ YY     G + +D + F  W  KG  PAI   L L+ K+I  
Sbjct:   107 GKDIWIFDIDETLLSNLPYYMEHGCGLEVFDHSKFDMWVEKGIAPAIAPSLKLYQKVIHL 166

Query:   160 GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE 219
             G KVIL+TGR  E    +T +NL N GF  +++LI+R+  D+ K A  YKSE R+++++E
Sbjct:   167 GYKVILLTGR-RENHRVITVENLRNAGFHNWDKLILRSLDDRNKTATMYKSEKREEMVKE 225

Query:   220 GYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
             GYRI GN GDQWSDL G     R+FKLPNPMY++P
Sbjct:   226 GYRIRGNSGDQWSDLLGSAMSERSFKLPNPMYYIP 260

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2176267 AT5G51260 [Arabidopsis thaliana (taxid:3702)]

 Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
 Identities = 104/254 (40%), Positives = 158/254 (62%)

Query:     9 LLFLLL-AIFSKATGTK--DYPN---SRYSMPG--DGASYCLSWRLAVEANNVRAWRTVP 60
             L+FL++ ++F+ A      +YP+   SR+      D   +C +WR A E NN+  W+T+P
Sbjct:     5 LIFLVVVSLFTSAFSDSILEYPSEIESRHKKAAEEDVNLHCTTWRFAAEMNNLAPWKTIP 64

Query:    61 TQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYK 120
              +C  YV+ Y++G  Y  D+E V E+ L +   +  SGDG D WI D+D+T +SN+ YY 
Sbjct:    65 VECADYVKDYVMGKGYLTDLERVSEEALIFARSIEFSGDGKDIWIFDIDETLLSNLPYYI 124

Query:   121 GKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD 180
                +G + +D + F  W  +G  PAI   L L+ ++++ G KV L+TGR +E+   VT +
Sbjct:   125 DHGFGLELFDHSEFDKWVERGVAPAIAPSLKLYQRVLDLGYKVFLLTGR-KESHRLVTVE 183

Query:   181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTG 240
             NL N GF  +++LI+R+  ++ K A  YKSE R ++++EGYRI GN GDQWSDL G    
Sbjct:   184 NLINAGFQNWDKLILRSPEEQHKMATLYKSEKRDEMVKEGYRIRGNSGDQWSDLLGTSMS 243

Query:   241 NRTFKLPNPMYFVP 254
              R+FKL NPMY++P
Sbjct:   244 QRSFKLANPMYYIP 257

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2024102 AT1G04040 [Arabidopsis thaliana (taxid:3702)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 86/222 (38%), Positives = 128/222 (57%)

Query:    36 DGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVV 95
             D   YC SWR+ VE +N+R +  VP +C+ +++ YM   QY  DV   V++++ +   + 
Sbjct:    50 DLKGYCESWRINVEVHNIRKFDVVPQECVSHIKDYMTSSQYKDDVARTVDEVILHFGSMC 109

Query:    96 LSG---DGMDAWILDVDDTCISNVYYYKGKRY-GCDPYDPAGFRAWALKGGCPAIPGVLV 151
              S    DGMDAWI D+DDT +S + Y+K   + G +  +   F  W  K   PA+P +  
Sbjct:   110 CSKSKCDGMDAWIFDIDDTLLSTIPYHKKNGFFGGEKLNSTKFEDWIQKKKAPAVPHMKK 169

Query:   152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSE 211
             L++ + E G+K+ L++ R +E     T DNL   G+ G+  L++R   D+ K    YKSE
Sbjct:   170 LYHDIRERGIKIFLISSR-KEYLRSATVDNLIQAGYYGWSNLMLRGLEDQQKEVKQYKSE 228

Query:   212 IRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFV 253
              RK L+  GYR+WG +GDQWS   G     RTFKLPN +Y+V
Sbjct:   229 KRKWLMSLGYRVWGVMGDQWSSFAGCPLPRRTFKLPNSIYYV 270

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0030243 "cellulose metabolic process" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2172447 AT5G44020 [Arabidopsis thaliana (taxid:3702)]

 Score = 431 (156.8 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 81/218 (37%), Positives = 128/218 (58%)

Query:    40 YCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSG- 98
             YC SWR+ VE NN+R ++ VP +C+ +V+ YM   QY+ DVE  V++ + Y+ +      
Sbjct:    55 YCESWRVNVELNNIRDFKVVPQECVWFVQKYMTSSQYEDDVERAVDEAILYLGKTCCEKK 114

Query:    99 --DGMDAWILDVDDTCISNVYYYKGKR-YGCDPYDPAGFRAWALKGGCPAIPGVLVLFNK 155
               DGMDAWI D+DDT +S + Y+K    +G +  +   F  W   G  PA+P ++ L+++
Sbjct:   115 TCDGMDAWIFDIDDTLLSTIPYHKSNGCFGGEQLNTTKFEEWQNSGKAPAVPHMVKLYHE 174

Query:   156 LIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQ 215
             + E G K+ L++ R +E     T +NL   G+  +  L++R   D+ K+   YK+++R  
Sbjct:   175 IRERGFKIFLISSR-KEYLRSATVENLIEAGYHSWSNLLLRGEDDEKKSVSQYKADLRTW 233

Query:   216 LLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFV 253
             L   GYR+WG +G QW+   G     RTFKLPN +Y+V
Sbjct:   234 LTSLGYRVWGVMGAQWNSFSGCPVPKRTFKLPNSIYYV 271

GO:0003993 "acid phosphatase activity" evidence=IEA;ISS

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2184580 VSP2 "AT5G24770" [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 86/216 (39%), Positives = 125/216 (57%)

Query:    41 CLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGG-QYDRDVELVVEQILCYVNEVVLSGD 99
             C SW L VE +N+  + TVP  C  YVE Y+I   QY  D + V ++   Y   + L  D
Sbjct:    52 CRSWHLGVETSNIIDFDTVPANCKDYVEDYLITSKQYQYDSKTVCKEAYFYAKGLALKND 111

Query:   100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGC-PAIPGVLVLFNKLIE 158
              ++ WI D+DDT +S++ YY    YG +  DP  +  W   G   P +P  L L+  +IE
Sbjct:   112 TVNVWIFDLDDTLLSSIPYYAKYGYGTEKTDPGAYWLWLGTGASTPGLPEALHLYQNIIE 171

Query:   159 SGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE 218
              G++ I+++ R  + +  VT DNL   G   ++ LI++      +  V YKS++RK L++
Sbjct:   172 LGIEPIILSDR-WKLWKNVTLDNLEAAGVTYWKHLILKPNGSNLRQVV-YKSKVRKSLVK 229

Query:   219 EGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
             +GY I GNIGDQW+DL  E T  R FKLPNP+Y+VP
Sbjct:   230 KGYNIVGNIGDQWADLV-EDTPGRVFKLPNPLYYVP 264

GO:0003993 "acid phosphatase activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=TAS

GO:0042538 "hyperosmotic salinity response" evidence=IGI

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0046688 "response to copper ion" evidence=IEP

GO:0009625 "response to insect" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0002213 "defense response to insect" evidence=IDA

TAIR|locus:2184585 VSP1 "AT5G24780" [Arabidopsis thaliana (taxid:3702)]

 Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
 Identities = 84/216 (38%), Positives = 125/216 (57%)

Query:    41 CLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGG-QYDRDVELVVEQILCYVNEVVLSGD 99
             C SW L VE +N+  + TVP  C  YVE Y+I   QY  D + V ++   Y   + L  D
Sbjct:    57 CRSWHLGVETSNIINFDTVPANCKAYVEDYLITSKQYQYDSKTVNKEAYFYAKGLALKND 116

Query:   100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKG-GCPAIPGVLVLFNKLIE 158
              ++ WI D+DDT +S++ YY    YG +   P  + +W   G   P +P  L L+  L+E
Sbjct:   117 TVNVWIFDLDDTLLSSIPYYAKYGYGTENTAPGAYWSWLESGESTPGLPETLHLYENLLE 176

Query:   159 SGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE 218
              G++ I+++ R ++   +VT +NL   G   ++ LI++    K    V YKS++R  L++
Sbjct:   177 LGIEPIIISDRWKK-LSEVTVENLKAVGVTKWKHLILKPNGSK-LTQVVYKSKVRNSLVK 234

Query:   219 EGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
             +GY I GNIGDQW+DL  E T  R FKLPNP+Y+VP
Sbjct:   235 KGYNIVGNIGDQWADLV-EDTPGRVFKLPNPLYYVP 269

GO:0003993 "acid phosphatase activity" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=ISM

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;TAS

GO:0008134 "transcription factor binding" evidence=IDA

GO:0006952 "defense response" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

TIGR_CMR|CBU_0335 CBU_0335 "acid phosphatase, class B" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 60/187 (32%), Positives = 89/187 (47%)

Query:    70 YMIGGQYDRDVELVVEQILCYVNEVVLSGDGMD-----AWILDVDDTCISNVYYYKGKRY 124
             Y   G+YD D+  V      Y+ + +            A +LD+D+T +SN    K   +
Sbjct:    40 YHESGEYDVDISKVTHLAKRYLADRIRENQHASHPKKLAMVLDIDETSLSNYSDIKVLNF 99

Query:   125 GCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN 184
             G          A    G  PAI   L L+   I+ G+ V  +TGR E+ +   T  NL  
Sbjct:   100 GGTFLQQDLAEA---DGDDPAITPTLNLYRYAIQHGVAVFFITGRQEK-YRTATIKNLKT 155

Query:   185 QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTF 244
              G+  + RL M+    +  +A  YK   RK + +EGY I  N+GDQ+SDL+G  +   ++
Sbjct:   156 AGYSQWARLYMKPNDYRLNSAAPYKISERKAIEKEGYDIVLNMGDQYSDLKGGYS-EHSY 214

Query:   245 KLPNPMY 251
             KLPN MY
Sbjct:   215 KLPNFMY 221


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.140   0.443    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      254       254   0.00084  114 3  11 22  0.44    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  612 (65 KB)
  Total size of DFA:  225 KB (2123 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.21u 0.14s 20.35t   Elapsed:  00:00:01
  Total cpu time:  20.21u 0.14s 20.35t   Elapsed:  00:00:01
  Start:  Fri May 10 05:59:19 2013   End:  Fri May 10 05:59:20 2013

GO:0003993 "acid phosphatase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	LOW CONFIDENCE prediction!
3rd Layer	3.1.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033659001 SubName- Full=Putative uncharacterized protein (Chromosome chr8 scaffold_68, whole genome shotgun sequence); (251 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
TIGR01675	229	TIGR01675, plant-AP, plant acid phosphatase	1e-118
pfam03767	213	pfam03767, Acid_phosphat_B, HAD superfamily, subfa	6e-92
TIGR01680	275	TIGR01680, Veg_Stor_Prot, vegetative storage prote	1e-51
TIGR01533	266	TIGR01533, lipo_e_P4, 5'-nucleotidase, lipoprotein	2e-10
COG2503	274	COG2503, COG2503, Predicted secreted acid phosphat	1e-09

>gnl|CDD|130736 TIGR01675, plant-AP, plant acid phosphatase

 Score =  337 bits (866), Expect = e-118
 Identities = 125/219 (57%), Positives = 148/219 (67%), Gaps = 1/219 (0%)

Query: 36  DGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVV 95
              +YC SWRL VE NN+R W TVP +C  YVE YM   QY RDV+ VV++   Y   + 
Sbjct: 12  IDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLA 71

Query: 96  LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNK 155
           LSGDGMDAWI DVDDT +SN+ YYK   YG +  DP  F  W  KG  PA+P  L L+ K
Sbjct: 72  LSGDGMDAWIFDVDDTLLSNIPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQK 131

Query: 156 LIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQ 215
           +IE G+K+ L++GR EE     T DNL N GF G++ LI+R   D  K  VTYKSE+RK 
Sbjct: 132 IIELGIKIFLLSGRWEE-LRNATLDNLINAGFTGWKHLILRGLEDSNKTVVTYKSEVRKS 190

Query: 216 LLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP 254
           L+EEGYRIWGNIGDQWSDL G   G RTFKLPNPMY+VP
Sbjct: 191 LMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP 229

This model represents a family of acid phosphatase from plants which are most closely related to the (so called) class B non-specific acid phosphatase OlpA (TIGR01533, which is believed to be a 5'-nucleotide phosphatase) and somewhat more distantly to another class B phosphatase, AphA (TIGR01672). Together these three clades define a subfamily (pfam03767) which corresponds to the IIIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. It has been reported that the best substrate for this enzyme that could be found was purine 5'-nucleoside phosphates. This is in concordance with the assignment of the H. influenzae hel protein (from TIGR01533) as a 5'-nucleotidase, however there is presently no other evidence to support this specific function for these plant phosphatases. Many genes from this family have been annotated as vegetative storage proteins due to their close homology with these earlier-characterized gene products which are highly expressed in leaves. There are significant differences however, including expression levels and distribution. The most important difference is the lack in authentic VSPs of the nucleophilic aspartate residue, which is instead replaced by serine, glycine or asparagine. Thus these proteins can not be expected to be active phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases. Length = 229

>gnl|CDD|217719 pfam03767, Acid_phosphat_B, HAD superfamily, subfamily IIIB (Acid phosphatase)

 Score =  269 bits (690), Expect = 6e-92
 Identities = 106/214 (49%), Positives = 140/214 (65%), Gaps = 2/214 (0%)

Query: 42  LSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGM 101
            SWRLAVE NN+R ++T+P +C+ YV+ YM G QY  D + VV+Q   Y  E  L GD  
Sbjct: 1   ASWRLAVETNNIRPFKTIPAECVDYVKDYMNGQQYSSDSKAVVDQAYNYAKERELHGDKK 60

Query: 102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGL 161
           DA + D+D+T +SN  YY    YG +P+DP  F  W  KG  PA+PG L L+N L+E G+
Sbjct: 61  DAVVFDIDETVLSNSPYYAYHGYGGEPFDPEKFDEWVNKGEAPALPGALELYNYLVELGV 120

Query: 162 KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY 221
           K+  V+GR E+     T +NL   GF G+E+LI+R   D  K+A +YKSE RK+L+++GY
Sbjct: 121 KIFFVSGRSEDLR-AATVENLKKAGFHGWEKLILRGKKDSNKSATSYKSERRKKLVKKGY 179

Query: 222 RIWGNIGDQWSDLQGECT-GNRTFKLPNPMYFVP 254
            I GNIGDQWSD  G    G RTFKLPNPMY++ 
Sbjct: 180 NIVGNIGDQWSDFLGNGARGIRTFKLPNPMYYIW 213

This family proteins includes acid phosphatases and a number of vegetative storage proteins. Length = 213

>gnl|CDD|130741 TIGR01680, Veg_Stor_Prot, vegetative storage protein

 Score =  169 bits (428), Expect = 1e-51
 Identities = 91/254 (35%), Positives = 140/254 (55%), Gaps = 14/254 (5%)

Query: 7   EVLLFLLLAIF----SKATGTKDYPNSRYSMPGDGAS----YCLSWRLAVEANNVRAWRT 58
           + L+F + AI             +P    +  G GA      C SWRLAVEA+N+  + T
Sbjct: 1   KCLVFFVAAILVASQCHGAAFDMFPLRMNTGYGAGARDPEVKCASWRLAVEAHNIFGFET 60

Query: 59  VPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYY 118
           +P +C+     Y+ G QY  D + V +Q   +  ++ +     D ++ ++D T +SN+ Y
Sbjct: 61  IPEECVDATAEYIEGEQYRSDSKTVNQQAYFFARDLEVHEK--DTFLFNIDGTALSNIPY 118

Query: 119 YKGKRYGCDPYDPAGF-RAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQV 177
           YK   YG + +D   +   +  KG  PA+P  L  +NKL+  G K+I ++GR ++    V
Sbjct: 119 YKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRLKDKQA-V 177

Query: 178 TRDNLHNQGFVGYERLIMRTAAD-KGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQG 236
           T  NL   G+  +E+LI++   D   +NAV YK+  R +L++EGY I G IGDQW+DL+G
Sbjct: 178 TEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLKG 237

Query: 237 ECTG-NRTFKLPNP 249
           E  G  R+FKLPNP
Sbjct: 238 EHRGAIRSFKLPNP 251

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP. Length = 275

>gnl|CDD|233452 TIGR01533, lipo_e_P4, 5'-nucleotidase, lipoprotein e(P4) family

 Score = 59.1 bits (143), Expect = 2e-10
 Identities = 44/172 (25%), Positives = 63/172 (36%), Gaps = 34/172 (19%)

Query: 103 AWILDVDDTCISNVYY--YKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG 160
           A +LD+D+T + N  Y  Y+       P+DP  +  W        + G L   N     G
Sbjct: 77  AIVLDLDETVLDNSPYQGYQVLN--NKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKG 134

Query: 161 LKVILVTGRDEETFGQVTRDNLHNQGF--VGYERLIMRTAADKGKNAVTYKSEIRKQLLE 218
           +K+  V+ R  E     T  NL   GF     E L+++      K       E R+Q ++
Sbjct: 135 VKIFYVSNRS-EKEKAATLKNLKRFGFPQADEEHLLLKK-DKSSK-------ESRRQKVQ 185

Query: 219 EGYRIWGNIGDQWSDL-------------------QGECTGNRTFKLPNPMY 251
           + Y I    GD   D                      E  G +   LPNPMY
Sbjct: 186 KDYEIVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMY 237

This model represents a set of bacterial lipoproteins belonging to a larger acid phosphatase family (pfam03767), which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles [Transport and binding proteins, Other, Biosynthesis of cofactors, prosthetic groups, and carriers, Pyridine nucleotides]. Length = 266

>gnl|CDD|225305 COG2503, COG2503, Predicted secreted acid phosphatase [General function prediction only]

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 42/170 (24%), Positives = 73/170 (42%), Gaps = 30/170 (17%)

Query: 103 AWILDVDDTCISNVYYYKGKRYG-CDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGL 161
           A +LD+D+T + N   Y+G +      + P  +  W       A+PG +   N +  +G 
Sbjct: 81  AVVLDLDETVLDN-SAYQGYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGG 139

Query: 162 KVILVTGRDEETFGQVTRDNLHNQGF--VGYERLIMRTAADKGKNAVTYKSEIRKQLLEE 219
           K+  ++ RD+E     T +NL ++G   V    L+++    K K +     E+R+Q +E+
Sbjct: 140 KIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLK----KDKKS----KEVRRQAVEK 191

Query: 220 GYRIWGNIGDQWSDL------------------QGECTGNRTFKLPNPMY 251
            Y+I   +GD   D                     +  G +   LPN MY
Sbjct: 192 DYKIVMLVGDNLDDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMY 241

Length = 274

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	100.0
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	100.0
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	100.0
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	100.0
COG2503	274	Predicted secreted acid phosphatase [General funct	99.97
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	99.89
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	99.82
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.67
PRK14988	224	GMP/IMP nucleotidase; Provisional	99.66
COG0546	220	Gph Predicted phosphatases [General function predi	99.65
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	99.64
PRK13288	214	pyrophosphatase PpaX; Provisional	99.64
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	99.63
PRK13226	229	phosphoglycolate phosphatase; Provisional	99.63
PLN02575	381	haloacid dehalogenase-like hydrolase	99.62
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	99.62
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	99.62
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	99.61
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	99.61
PRK13225	273	phosphoglycolate phosphatase; Provisional	99.61
PRK11587	218	putative phosphatase; Provisional	99.61
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	99.6
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	99.6
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	99.6
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	99.59
PHA02530	300	pseT polynucleotide kinase; Provisional	99.58
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	99.56
PRK13223	272	phosphoglycolate phosphatase; Provisional	99.55
PLN02940	382	riboflavin kinase	99.55
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	99.54
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.54
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	99.53
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	99.53
PRK13222	226	phosphoglycolate phosphatase; Provisional	99.52
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	99.52
PRK09449	224	dUMP phosphatase; Provisional	99.49
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	99.49
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.49
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	99.48
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	99.48
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	99.48
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.47
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	99.45
PRK10563	221	6-phosphogluconate phosphatase; Provisional	99.45
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	99.45
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	99.44
PHA02597	197	30.2 hypothetical protein; Provisional	99.43
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	99.42
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	99.41
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	99.39
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	99.39
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	99.39
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	99.39
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	99.38
PLN02954	224	phosphoserine phosphatase	99.35
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	99.35
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	99.35
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	99.34
PRK10748	238	flavin mononucleotide phosphatase; Provisional	99.33
PRK06769	173	hypothetical protein; Validated	99.32
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.32
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	99.31
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	99.3
PRK13582	205	thrH phosphoserine phosphatase; Provisional	99.29
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	99.29
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	99.27
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.2
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	99.2
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	99.2
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	99.18
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	99.17
KOG2914	222	consensus Predicted haloacid-halidohydrolase and r	99.17
PLN02811	220	hydrolase	99.16
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.16
COG3700	237	AphA Acid phosphatase (class B) [General function	99.13
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	99.13
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	99.11
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	99.1
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.07
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	99.06
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	99.03
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	99.0
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	99.0
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	98.99
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	98.96
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	98.92
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	98.91
PRK11133	322	serB phosphoserine phosphatase; Provisional	98.89
PLN02645	311	phosphoglycolate phosphatase	98.88
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	98.83
PRK11590	211	hypothetical protein; Provisional	98.79
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	98.78
PRK08238	479	hypothetical protein; Validated	98.77
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	98.74
PHA03398	303	viral phosphatase superfamily protein; Provisional	98.73
COG0241	181	HisB Histidinol phosphatase and related phosphatas	98.73
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	98.69
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	98.69
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	98.68
PRK10444	248	UMP phosphatase; Provisional	98.67
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	98.65
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	98.64
KOG1615	227	consensus Phosphoserine phosphatase [Amino acid tr	98.64
KOG3085	237	consensus Predicted hydrolase (HAD superfamily) [G	98.64
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	98.61
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	98.57
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	98.5
PRK01158	230	phosphoglycolate phosphatase; Provisional	98.48
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	98.47
PRK10513	270	sugar phosphate phosphatase; Provisional	98.47
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	98.46
PRK10976	266	putative hydrolase; Provisional	98.45
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	98.45
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	98.44
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.44
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	98.41
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	98.38
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	98.38
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	98.38
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	98.37
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	98.36
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	98.35
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	98.35
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.34
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	98.32
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	98.32
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	98.3
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	98.26
PTZ00174	247	phosphomannomutase; Provisional	98.24
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	98.22
PTZ00445	219	p36-lilke protein; Provisional	98.2
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	98.2
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.18
PLN02887	580	hydrolase family protein	98.16
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	98.15
COG4850	373	Uncharacterized conserved protein [Function unknow	98.15
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	98.11
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	98.06
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	98.03
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	98.02
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	98.01
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	97.93
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	97.92
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	97.92
KOG2116	738	consensus Protein involved in plasmid maintenance/	97.89
KOG2882	306	consensus p-Nitrophenyl phosphatase [Inorganic ion	97.89
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	97.84
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	97.84
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	97.82
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	97.81
PLN02423	245	phosphomannomutase	97.72
KOG3040	262	consensus Predicted sugar phosphatase (HAD superfa	97.68
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	97.65
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	97.64
TIGR02471	236	sucr_syn_bact_C sucrose phosphate synthase, sucros	97.63
TIGR01522	884	ATPase-IIA2_Ca golgi membrane calcium-translocatin	97.61
COG5083	580	SMP2 Uncharacterized protein involved in plasmid m	97.5
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	97.48
COG4359	220	Uncharacterized conserved protein [Function unknow	97.46
PLN03017	366	trehalose-phosphatase	97.45
PLN02151	354	trehalose-phosphatase	97.37
COG4996	164	Predicted phosphatase [General function prediction	97.28
PRK14501	726	putative bifunctional trehalose-6-phosphate syntha	97.17
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.13
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	97.07
PLN02382	413	probable sucrose-phosphatase	97.06
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	97.04
COG1877	266	OtsB Trehalose-6-phosphatase [Carbohydrate transpo	97.01
PRK10671	834	copA copper exporting ATPase; Provisional	97.01
COG5663	194	Uncharacterized conserved protein [Function unknow	96.99
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	96.98
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	96.94
PLN02580	384	trehalose-phosphatase	96.93
TIGR01517	941	ATPase-IIB_Ca plasma-membrane calcium-translocatin	96.88
PLN02205	854	alpha,alpha-trehalose-phosphate synthase [UDP-form	96.83
TIGR01106	997	ATPase-IIC_X-K sodium or proton efflux -- potassiu	96.78
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	96.77
PRK14010	673	potassium-transporting ATPase subunit B; Provision	96.77
TIGR01497	675	kdpB K+-transporting ATPase, B subunit. One sequen	96.76
COG4087	152	Soluble P-type ATPase [General function prediction	96.62
TIGR01647	755	ATPase-IIIA_H plasma-membrane proton-efflux P-type	96.56
PRK01122	679	potassium-transporting ATPase subunit B; Provision	96.56
TIGR01116	917	ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium	96.54
PF05116	247	S6PP: Sucrose-6F-phosphate phosphohydrolase; Inter	96.45
TIGR01523	1053	ATPase-IID_K-Na potassium and/or sodium efflux P-t	96.38
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	96.36
KOG1618	389	consensus Predicted phosphatase [General function	96.32
TIGR01524	867	ATPase-IIIB_Mg magnesium-translocating P-type ATPa	96.29
PRK10517	902	magnesium-transporting ATPase MgtA; Provisional	96.27
PRK15122	903	magnesium-transporting ATPase; Provisional	96.18
KOG0202	972	consensus Ca2+ transporting ATPase [Inorganic ion	96.09
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	95.86
PF02358	235	Trehalose_PPase: Trehalose-phosphatase; InterPro:	95.84
PLN03063	797	alpha,alpha-trehalose-phosphate synthase (UDP-form	95.81
PLN03064	934	alpha,alpha-trehalose-phosphate synthase (UDP-form	95.61
PF06189	264	5-nucleotidase: 5'-nucleotidase; InterPro: IPR0103	95.38
COG0474	917	MgtA Cation transport ATPase [Inorganic ion transp	95.36
TIGR01494	499	ATPase_P-type ATPase, P-type (transporting), HAD s	95.21
KOG2134	422	consensus Polynucleotide kinase 3' phosphatase [Re	94.97
PF05761	448	5_nucleotid: 5' nucleotidase family; InterPro: IPR	94.87
PF13242	75	Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY	94.77
TIGR01657	1054	P-ATPase-V P-type ATPase of unknown pump specifici	94.56
COG4229	229	Predicted enolase-phosphatase [Energy production a	94.47
PLN02645	311	phosphoglycolate phosphatase	93.96
KOG2470	510	consensus Similar to IMP-GMP specific 5'-nucleotid	93.88
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	93.49
PF10307	197	DUF2410: Hypothetical protein (DUF2410); InterPro:	93.06
PLN02177	497	glycerol-3-phosphate acyltransferase	93.05
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	91.68
PLN02499	498	glycerol-3-phosphate acyltransferase	91.54
PF09949	100	DUF2183: Uncharacterized conserved protein (DUF218	90.72
KOG2961	190	consensus Predicted hydrolase (HAD superfamily) [G	90.71
COG2216	681	KdpB High-affinity K+ transport system, ATPase cha	89.97
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	89.74
KOG3189	252	consensus Phosphomannomutase [Lipid transport and	88.69
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	88.13
TIGR01652	1057	ATPase-Plipid phospholipid-translocating P-type AT	86.9
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	86.43
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	85.92
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	85.88
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	84.67
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	84.02
KOG0204	1034	consensus Calcium transporting ATPase [Inorganic i	82.45
PLN03190	1178	aminophospholipid translocase; Provisional	81.91
COG5610	635	Predicted hydrolase (HAD superfamily) [General fun	81.8
PRK10444	248	UMP phosphatase; Provisional	81.41

>TIGR01675 plant-AP plant acid phosphatase

Probab=100.00  E-value=2.8e-73  Score=491.63  Aligned_cols=218  Identities=57%  Similarity=1.030  Sum_probs=211.6

Q ss_pred             CccccccceeecceecccccccccccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccc
Q 025360           36 DGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISN  115 (254)
Q Consensus        36 ~~~~~c~sw~~~~e~nn~~~~~~~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~  115 (254)
                      ...+||+||||+||+||+++|+|||++|++||++||+||||++|+++|+++|..|++++.+++++++|||||||+|+|||
T Consensus        12 ~~~~~c~swr~~ve~~n~~~~~~vp~~c~~~v~~Y~~~~~Y~~D~~~v~~~a~~y~~~~~~~~dg~~A~V~DIDET~LsN   91 (229)
T TIGR01675        12 IDYAYCRSWRLGVETNNIRDWDTVPAECKDYVEDYMTSKQYKRDVKRVVDEAYFYAKSLALSGDGMDAWIFDVDDTLLSN   91 (229)
T ss_pred             CCcCcchhhhhhhhhccccccccCcHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhhccCCCCcEEEEccccccccC
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEE
Q 025360          116 VYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIM  195 (254)
Q Consensus       116 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lil  195 (254)
                      .||+..+.||+++|+++.|++|+..++++++|++++++++|+++|++|+|+|||+ +.+|+.|.+||.++||++|++|+|
T Consensus        92 ~py~~~~~~g~~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~-e~~r~~T~~nL~~~G~~~~~~LiL  170 (229)
T TIGR01675        92 IPYYKKHGYGTEKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRW-EELRNATLDNLINAGFTGWKHLIL  170 (229)
T ss_pred             HHHHHHhccCCCcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC-hHHHHHHHHHHHHcCCCCcCeeee
Confidence            9999999999999999999999999999999999999999999999999999999 999999999999999999999999


Q ss_pred             ecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEEeCCCCCCCC
Q 025360          196 RTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNPMYFVP  254 (254)
Q Consensus       196 r~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fklPNp~y~~~  254 (254)
                      |+.++.++++..||+++|++++++||+|+++|||||+||.|+++|.|+|||||||||||
T Consensus       171 R~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl~G~~~~~RtFKLPNPmYyi~  229 (229)
T TIGR01675       171 RGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDLLGSPPGRRTFKLPNPMYYVP  229 (229)
T ss_pred             cCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHhcCCCccCceeeCCCCcccCC
Confidence            98777777788999999999999999999999999999999999999999999999997

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=100.00  E-value=6.7e-71  Score=483.92  Aligned_cols=241  Identities=35%  Similarity=0.674  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHHHhccCCCCCCCCCCCCCCCc---------cccccceeecceecccccccccccchHHHHHhhhcCCcch
Q 025360            7 EVLLFLLLAIFSKATGTKDYPNSRYSMPGDG---------ASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYD   77 (254)
Q Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~c~sw~~~~e~nn~~~~~~~p~~c~~~v~~y~~~~~Y~   77 (254)
                      .+++||+++|+++++  +...++.+|+++.+         +.||+|||++||+||+++|+|||++|++||++||+||||+
T Consensus         2 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~c~swr~~vE~~n~~~w~~vP~~C~~~v~~Y~~ggqY~   79 (275)
T TIGR01680         2 CLVFFVAAILVASQC--HGAAFDMFPLRMNTGYGAGARDPEVKCASWRLAVEAHNIFGFETIPEECVDATAEYIEGEQYR   79 (275)
T ss_pred             eEEeehHHHHhhccc--ccchhhhhcccccccccccccCCCCcccceeeeeeecccCCcccCcHHHHHHHHHHhcchhHH
Confidence            356777777745444  66677788887543         3689999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHH-HHHHhCCCCCchHHHHHHHHH
Q 025360           78 RDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFR-AWALKGGCPAIPGVLVLFNKL  156 (254)
Q Consensus        78 ~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~pg~~ell~~L  156 (254)
                      +|+++|+++|..|++++.+  ++++|||||||||+|||.||+..+.||+++|+++.|+ +|+..+.+|++|++++|++++
T Consensus        80 ~D~~~v~~~a~~y~~~~~~--~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~~~~w~~~Wv~~~~ApAlp~al~ly~~l  157 (275)
T TIGR01680        80 SDSKTVNQQAYFFARDLEV--HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFDSELYDEEFVNKGEAPALPETLKNYNKL  157 (275)
T ss_pred             HHHHHHHHHHHHHHHhCcC--CCCCEEEEECccccccCHHHHHHhcCCCCcCChhhhhHHHHhcccCCCChHHHHHHHHH
Confidence            9999999999999988765  4689999999999999999999999999999999999 999999999999999999999


Q ss_pred             HHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCC-CCCCCcccHHHHHHHHHHcCCcEEEEEcCCccccc
Q 025360          157 IESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAAD-KGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQ  235 (254)
Q Consensus       157 ~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~  235 (254)
                      +++|++|+|||||+ |.+|+.|++||+++||+.|++|+||+.++ .++++..||+..|++++++||+|+++|||||+|+.
T Consensus       158 ~~~G~kIf~VSgR~-e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGDq~sDl~  236 (275)
T TIGR01680       158 VSLGFKIIFLSGRL-KDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGDQWNDLK  236 (275)
T ss_pred             HHCCCEEEEEeCCc-hhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECCCHHhcc
Confidence            99999999999999 99999999999999999999999998764 45567899999999999999999999999999999


Q ss_pred             ccccC-CcEEEeCCCCCC
Q 025360          236 GECTG-NRTFKLPNPMYF  252 (254)
Q Consensus       236 ga~~g-~r~fklPNp~y~  252 (254)
                      |++.| .|+||||||||-
T Consensus       237 G~~~g~~RtFKLPNP~~~  254 (275)
T TIGR01680       237 GEHRGAIRSFKLPNPCTT  254 (275)
T ss_pred             CCCccCcceecCCCcccc
Confidence            99986 799999999774

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=100.00  E-value=7.2e-54  Score=373.15  Aligned_cols=211  Identities=43%  Similarity=0.761  Sum_probs=184.5

Q ss_pred             cccccceeecceecccccccccccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchh
Q 025360           38 ASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVY  117 (254)
Q Consensus        38 ~~~c~sw~~~~e~nn~~~~~~~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~  117 (254)
                      ..+|+||+++||+|| .+|.+  ++|+.++.+ ++++||.+|++.++.+|..|+++....++++++||||||||+|||.+
T Consensus        13 ~~~c~s~~~~~e~~~-~~~~~--~~~~~~~~~-~~~~q~~~e~~a~~~~a~~~a~~~~~~~~~~~avv~DIDeTvLsn~~   88 (229)
T PF03767_consen   13 ALYCASWRLAVETNN-ANWTV--AECVEYVAD-VTWGQYSAEYKALVDQAYNYAKSRLDEADKPPAVVFDIDETVLSNSP   88 (229)
T ss_dssp             -----TCCSSHHHHH-----H--HHHHHTTHH-HHHHHHEHHHHHHHHHHHHHHHHHHHHHTSEEEEEEESBTTTEEHHH
T ss_pred             Hhhhhhccchhhhcc-hHHHH--HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHhccCCCcEEEEECCcccccCHH
Confidence            379999999999999 99965  999999999 99999999999999999999988876668999999999999999999


Q ss_pred             hhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEec
Q 025360          118 YYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRT  197 (254)
Q Consensus       118 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~  197 (254)
                      |+..+.+++..|+++.|++|+..+.++++||+++|+++++++|++|+|||||+ +.+|+.|++||+++|++.|++++|++
T Consensus        89 y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~-~~~r~~T~~nL~~~G~~~~~~l~lr~  167 (229)
T PF03767_consen   89 YYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRP-ESQREATEKNLKKAGFPGWDHLILRP  167 (229)
T ss_dssp             HHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEE-TTCHHHHHHHHHHHTTSTBSCGEEEE
T ss_pred             HHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCC-chhHHHHHHHHHHcCCCccchhcccc
Confidence            99998888888999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             CCC-CCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccc----cccCCcEEEeCCCCCCC
Q 025360          198 AAD-KGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQG----ECTGNRTFKLPNPMYFV  253 (254)
Q Consensus       198 ~~~-~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~g----a~~g~r~fklPNp~y~~  253 (254)
                      ..+ ..+++..||+..|..|++.||+|+++||||++||.|    +..|.|+|+|||||||+
T Consensus       168 ~~~~~~~~~~~yK~~~r~~i~~~Gy~Ii~~iGD~~~D~~~~~~~~~~~~r~f~lPNp~Yg~  228 (229)
T PF03767_consen  168 DKDPSKKSAVEYKSERRKEIEKKGYRIIANIGDQLSDFSGAKTAGARAERWFKLPNPMYGS  228 (229)
T ss_dssp             ESSTSS------SHHHHHHHHHTTEEEEEEEESSGGGCHCTHHHHHHHTTEEE-TTSSSSH
T ss_pred             ccccccccccccchHHHHHHHHcCCcEEEEeCCCHHHhhcccccccccceEEEcCCCCCCC
Confidence            875 555678999999999999999999999999999999    55689999999999984

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=100.00  E-value=3.5e-36  Score=266.50  Aligned_cols=180  Identities=24%  Similarity=0.334  Sum_probs=157.7

Q ss_pred             HHHHHhhhcCCcchHHHHHHHHHHHHHHHHhh-hcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCC
Q 025360           64 LRYVESYMIGGQYDRDVELVVEQILCYVNEVV-LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGG  142 (254)
Q Consensus        64 ~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~-~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  142 (254)
                      ..-+..|++|++|++++.++++.|+.++++.. ...++++|||||||||+|+|++|+..+.+++.+|+++.|++|+....
T Consensus        37 ~~~~~w~q~S~Ey~al~~q~~n~A~~~~~~~~~~~~~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~~~~~w~~wv~~~~  116 (266)
T TIGR01533        37 TMSVAWMQRSAEYKALYLQAYNLAKMRLDNNLKKVKDKKYAIVLDLDETVLDNSPYQGYQVLNNKPFDPETWDKWVQAAQ  116 (266)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCccccccChHHHHHHhcCCCcCCHHHHHHHHHcCC
Confidence            34577899999999999999999999986644 33577999999999999999999988888989999999999999999


Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC--CcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY--ERLIMRTAADKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ++++||+.+++++|+++|++++|+|||+ +..++.|..+|+++|++.+  +.+++++..       ..|...|+.+. .+
T Consensus       117 a~~ipGA~e~L~~L~~~G~~v~iVTnR~-~~~~~~T~~~Lkk~Gi~~~~~d~lllr~~~-------~~K~~rr~~I~-~~  187 (266)
T TIGR01533       117 AKPVAGALDFLNYANSKGVKIFYVSNRS-EKEKAATLKNLKRFGFPQADEEHLLLKKDK-------SSKESRRQKVQ-KD  187 (266)
T ss_pred             CCcCccHHHHHHHHHHCCCeEEEEeCCC-cchHHHHHHHHHHcCcCCCCcceEEeCCCC-------CCcHHHHHHHH-hc
Confidence            9999999999999999999999999999 9999999999999999864  467777531       23666666665 58


Q ss_pred             CcEEEEEcCCcccccccc-------------------cCCcEEEeCCCCCC
Q 025360          221 YRIWGNIGDQWSDLQGEC-------------------TGNRTFKLPNPMYF  252 (254)
Q Consensus       221 y~i~~~IGDq~sDi~ga~-------------------~g~r~fklPNp~y~  252 (254)
                      |+|+++|||+++||.+..                   +|.+.|.||||||.
T Consensus       188 y~Ivl~vGD~~~Df~~~~~~~~~~~~r~~~v~~~~~~fG~~~i~lPNp~YG  238 (266)
T TIGR01533       188 YEIVLLFGDNLLDFDDFFYKDKESQDRQALVLQNQEKFGKKFIILPNPMYG  238 (266)
T ss_pred             CCEEEEECCCHHHhhhhhccCcchHHHHHHHHHHHHHhCCCeEEecCCCCc
Confidence            999999999999997632                   69999999999996

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=99.97  E-value=2.4e-30  Score=221.55  Aligned_cols=179  Identities=23%  Similarity=0.367  Sum_probs=151.9

Q ss_pred             HHHhhhcCCcchHHHHHHHHHHHHHHH-HhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCC
Q 025360           66 YVESYMIGGQYDRDVELVVEQILCYVN-EVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCP  144 (254)
Q Consensus        66 ~v~~y~~~~~Y~~d~~~v~~~a~~y~~-~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  144 (254)
                      .|..|..+++|++-.-+..+.|..-++ ..++..++++|||+|||+|+|||++|.......+.+|+|+.|++|+....+.
T Consensus        43 ~v~w~Q~s~E~~AL~~Q~yn~Ak~~~d~~~k~~k~K~~aVvlDlDETvLdNs~Yqgy~v~nnk~f~pe~Wd~wV~a~~sk  122 (274)
T COG2503          43 SVNWYQQSAEYQALYLQAYNSAKIALDTQAKKKKGKKKAVVLDLDETVLDNSAYQGYQVLNNKGFTPETWDKWVQAKKSK  122 (274)
T ss_pred             hHHHhhhhHHHHHHHHHHhhhHHHHHHhhhccccCCCceEEEecchHhhcCccccchhhhcCCCCCccchHHHHhhcccc
Confidence            466788999998887777777776665 5667778888999999999999999998888888999999999999999999


Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC--CcEEEecCCCCCCCCcccHHHHHHHHHHcCCc
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY--ERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR  222 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~--~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~  222 (254)
                      ++||+.||+++..++|.+|+|+|+|.++.....|.++|.+.|++.-  .++++..+.       .-|+. |+++.+.+|.
T Consensus       123 ~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~~~~~~T~~nLk~~g~~~~~~~~~llkk~~-------k~Ke~-R~~~v~k~~~  194 (274)
T COG2503         123 AVPGAVEFLNYVNSNGGKIFYISNRDQENEKDGTIENLKSEGLPQVLESHLLLKKDK-------KSKEV-RRQAVEKDYK  194 (274)
T ss_pred             cCccHHHHHHHHHhcCcEEEEEeccchhcccchhHHHHHHcCcccccccceEEeeCC-------CcHHH-HHHHHhhccc
Confidence            9999999999999999999999999955558999999999999963  356666321       22555 4455556999


Q ss_pred             EEEEEcCCcccccccc------------------cCCcEEEeCCCCCC
Q 025360          223 IWGNIGDQWSDLQGEC------------------TGNRTFKLPNPMYF  252 (254)
Q Consensus       223 i~~~IGDq~sDi~ga~------------------~g~r~fklPNp~y~  252 (254)
                      |++.|||+..||....                  +|.+++++|||||.
T Consensus       195 iVm~vGDNl~DF~d~~~k~~~~eR~Alv~~~~~~FGk~~Ii~pN~~YG  242 (274)
T COG2503         195 IVMLVGDNLDDFGDNAYKKAEAERRALVKQNQKKFGKKFIILPNSMYG  242 (274)
T ss_pred             eeeEecCchhhhcchhhhhhhHHHHHHHHHHHHHhCceEEEecCCccC
Confidence            9999999999996554                  79999999999996

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=99.89  E-value=9.3e-23  Score=178.26  Aligned_cols=142  Identities=18%  Similarity=0.175  Sum_probs=105.2

Q ss_pred             CCceEEEecCCccccchhh--hhhhccC--CCCC--ChHHHHHHHHh--CCCCCchHHHHHHHHHHHCCCeEEEEeCCCc
Q 025360          100 GMDAWILDVDDTCISNVYY--YKGKRYG--CDPY--DPAGFRAWALK--GGCPAIPGVLVLFNKLIESGLKVILVTGRDE  171 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~--~~~~~~g--~~~~--~~~~~~~~~~~--~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~  171 (254)
                      ++.+|+||||||+|+|+|+  +.++.|+  ...|  +++-|+.|.+.  ..+.+.||++++|++|+++|++|+|||||+ 
T Consensus        62 ~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTnR~-  140 (237)
T PRK11009         62 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITGRT-  140 (237)
T ss_pred             CCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeCCC-
Confidence            3459999999999998874  4444453  3456  34445555543  356788889999999999999999999999 


Q ss_pred             cccHHHHHHHHHh-CCC--CCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEE---
Q 025360          172 ETFGQVTRDNLHN-QGF--VGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTF---  244 (254)
Q Consensus       172 e~~r~~T~~~L~~-~G~--~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~f---  244 (254)
                      +..++.|.++|.+ +|+  ..++.+++.++. ..|+   .|   +..+++.  .++++|||+++|+++|+ +|.+++   
T Consensus       141 ~~k~~~t~~~Llk~~gip~~~~f~vil~gd~-~~K~---~K---~~~l~~~--~i~I~IGDs~~Di~aA~~AGi~~I~v~  211 (237)
T PRK11009        141 ATKTETVSKTLADDFHIPADNMNPVIFAGDK-PGQY---TK---TQWLKKK--NIRIFYGDSDNDITAAREAGARGIRIL  211 (237)
T ss_pred             CcccHHHHHHHHHHcCCCcccceeEEEcCCC-CCCC---CH---HHHHHhc--CCeEEEcCCHHHHHHHHHcCCcEEEEe
Confidence            8888889999886 999  456777877654 2332   22   3345554  45899999999999997 565554   


Q ss_pred             EeCCCCC
Q 025360          245 KLPNPMY  251 (254)
Q Consensus       245 klPNp~y  251 (254)
                      .-+|++|
T Consensus       212 ~G~~~~~  218 (237)
T PRK11009        212 RAANSTY  218 (237)
T ss_pred             cCCCCCC
Confidence            5589988

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=99.82  E-value=2.3e-19  Score=157.01  Aligned_cols=137  Identities=16%  Similarity=0.124  Sum_probs=101.2

Q ss_pred             CCCCceEEEecCCccccchhhhhhhccCCCCC---------ChHHHHHHHHhCCC--CCchHHHHHHHHHHHCCCeEEEE
Q 025360           98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPY---------DPAGFRAWALKGGC--PAIPGVLVLFNKLIESGLKVILV  166 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~~~--~~~pg~~ell~~L~~~G~~i~~v  166 (254)
                      +.++-+|+|||||||+||.+++ .  +|...+         ++..|+.|......  .+.+++.++|++|+++|++++++
T Consensus        60 ~~~p~aViFDlDgTLlDSs~~~-~--~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iV  136 (237)
T TIGR01672        60 GRPPIAVSFDIDDTVLFSSPGF-W--RGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFV  136 (237)
T ss_pred             CCCCeEEEEeCCCccccCcHHH-h--CCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEE
Confidence            3444599999999999999987 2  332222         34678999877654  55566999999999999999999


Q ss_pred             eCCCccccHHHHHH-HHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcE
Q 025360          167 TGRDEETFGQVTRD-NLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRT  243 (254)
Q Consensus       167 TgR~~e~~r~~T~~-~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~  243 (254)
                      |||. +..++.+.+ .|+.+|++.++.+++.++. ..+||.   +.   ..+++  +.++++|||+.+|+.+|+ +|.++
T Consensus       137 Tnr~-~~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~---~~---~~l~~--~~i~i~vGDs~~DI~aAk~AGi~~  207 (237)
T TIGR01672       137 TGRT-PGKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYT---KT---QWIQD--KNIRIHYGDSDNDITAAKEAGARG  207 (237)
T ss_pred             eCCC-CCcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCC---HH---HHHHh--CCCeEEEeCCHHHHHHHHHCCCCE
Confidence            9997 543444444 4557999988888888765 333442   22   23444  446899999999999986 88988


Q ss_pred             EEe
Q 025360          244 FKL  246 (254)
Q Consensus       244 fkl  246 (254)
                      +.+
T Consensus       208 I~V  210 (237)
T TIGR01672       208 IRI  210 (237)
T ss_pred             EEE
Confidence            877

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.67  E-value=4.3e-16  Score=134.99  Aligned_cols=142  Identities=21%  Similarity=0.277  Sum_probs=109.2

Q ss_pred             CceEEEecCCccccchhhhhhhc------cCCC----------------------------C-CChHHHHHHHH------
Q 025360          101 MDAWILDVDDTCISNVYYYKGKR------YGCD----------------------------P-YDPAGFRAWAL------  139 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~------~g~~----------------------------~-~~~~~~~~~~~------  139 (254)
                      .+++|||+||||+|+.+.+.+.+      +|..                            . ........+..      
T Consensus         2 ~~avIFD~DGvLvDse~~~~~a~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (221)
T COG0637           2 IKAVIFDMDGTLVDSEPLHARAWLEALKEYGIEISDEEIRELHGGGIARIIDLLRKLAAGEDPADLAELERLLYEAEALE   81 (221)
T ss_pred             CcEEEEcCCCCcCcchHHHHHHHHHHHHHcCCCCCHHHHHHHHCCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHhh
Confidence            57999999999999988776532      2210                            0 11111111111      


Q ss_pred             hCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360          140 KGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLE  218 (254)
Q Consensus       140 ~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~  218 (254)
                      ....+++||+.++++.|+++|++++++|+.+    +..+...|..+|+..|++.++.+++ .++||++   ...+.+.+.
T Consensus        82 ~~~~~~~pGv~~~l~~L~~~~i~~avaS~s~----~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~P---d~yL~Aa~~  154 (221)
T COG0637          82 LEGLKPIPGVVELLEQLKARGIPLAVASSSP----RRAAERVLARLGLLDYFDVIVTADDVARGKPAP---DIYLLAAER  154 (221)
T ss_pred             hcCCCCCccHHHHHHHHHhcCCcEEEecCCh----HHHHHHHHHHccChhhcchhccHHHHhcCCCCC---HHHHHHHHH
Confidence            2457999999999999999999999999999    8999999999999988888777766 6778765   333345677


Q ss_pred             cCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          219 EGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       219 ~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .|..  .|+.|+|+.++++++. +|+++|.+|++
T Consensus       155 Lgv~P~~CvviEDs~~Gi~Aa~aAGm~vv~v~~~  188 (221)
T COG0637         155 LGVDPEECVVVEDSPAGIQAAKAAGMRVVGVPAG  188 (221)
T ss_pred             cCCChHHeEEEecchhHHHHHHHCCCEEEEecCC
Confidence            7665  4999999999999998 89999999983

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=99.66  E-value=1.1e-15  Score=132.63  Aligned_cols=102  Identities=19%  Similarity=0.133  Sum_probs=81.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++++.|+++|++++++||..    +......|+.+|+..|++.++.+++ ..+||++   ...+..+++.|
T Consensus        91 ~~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~----~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p---~~~~~~~~~~~  163 (224)
T PRK14988         91 RAVLREDTVPFLEALKASGKRRILLTNAH----PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQ---RLWQAVAEHTG  163 (224)
T ss_pred             cCCcCCCHHHHHHHHHhCCCeEEEEeCcC----HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCH---HHHHHHHHHcC
Confidence            36789999999999999999999999988    6777778899999888777776655 4567644   33344566667


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcE-EEeCCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRT-FKLPNPM  250 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~-fklPNp~  250 (254)
                      ..  .|++|||+.+|+++|+ +|+++ +.++||-
T Consensus       164 ~~p~~~l~igDs~~di~aA~~aG~~~~~~v~~~~  197 (224)
T PRK14988        164 LKAERTLFIDDSEPILDAAAQFGIRYCLGVTNPD  197 (224)
T ss_pred             CChHHEEEEcCCHHHHHHHHHcCCeEEEEEeCCC
Confidence            65  4999999999999998 78874 6678764

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=99.65  E-value=1.9e-15  Score=130.57  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=81.3

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.++|..|+++|++++++||++    +..+...|+++|+..|+..+.+.++ ...||++   ..+...+.+.|.
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~----~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P---~~l~~~~~~~~~  160 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKP----ERELDILLKALGLADYFDVIVGGDDVPPPKPDP---EPLLLLLEKLGL  160 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCc----HHHHHHHHHHhCCccccceEEcCCCCCCCCcCH---HHHHHHHHHhCC
Confidence            5799999999999999999999999999    8888999999999999998888444 5566654   444455666676


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      .  .+++|||+..|+++|+ +|..++.+.
T Consensus       161 ~~~~~l~VGDs~~Di~aA~~Ag~~~v~v~  189 (220)
T COG0546         161 DPEEALMVGDSLNDILAAKAAGVPAVGVT  189 (220)
T ss_pred             ChhheEEECCCHHHHHHHHHcCCCEEEEE
Confidence            6  6999999999999998 677766554

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=99.64  E-value=2.8e-15  Score=131.76  Aligned_cols=100  Identities=15%  Similarity=0.089  Sum_probs=83.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++|+.|+++|++++++||+.    +..+...|+++|+..|++.++.+++ ..+||.+   ......++..|
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~----~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p---~~~~~a~~~~~  178 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAP----RENAELMISLLGLSDFFQAVIIGSECEHAKPHP---DPYLKALEVLK  178 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCC----HHHHHHHHHHcCChhhCcEEEecCcCCCCCCCh---HHHHHHHHHhC
Confidence            46889999999999999999999999999    8888999999999988888887776 4567654   33444566666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      .+  .+++|||+.+|+++|+ +|.+++.+..
T Consensus       179 ~~~~~~l~vgDs~~Di~aA~~aGi~~i~v~~  209 (248)
T PLN02770        179 VSKDHTFVFEDSVSGIKAGVAAGMPVVGLTT  209 (248)
T ss_pred             CChhHEEEEcCCHHHHHHHHHCCCEEEEEeC
Confidence            54  4999999999999998 7999988853

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=99.64  E-value=3.8e-15  Score=127.51  Aligned_cols=140  Identities=16%  Similarity=0.165  Sum_probs=101.2

Q ss_pred             CceEEEecCCccccchhhhhhhc------cCCC-------------C-------CChHHHHHHH-------H---hCCCC
Q 025360          101 MDAWILDVDDTCISNVYYYKGKR------YGCD-------------P-------YDPAGFRAWA-------L---KGGCP  144 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~------~g~~-------------~-------~~~~~~~~~~-------~---~~~~~  144 (254)
                      .++||||+||||+++.+.+.+..      ++..             +       +.+..+.+.+       .   ....+
T Consensus         3 ~~~viFD~DGTL~ds~~~~~~a~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (214)
T PRK13288          3 INTVLFDLDGTLINTNELIISSFLHTLKTYYPNQYKREDVLPFIGPSLHDTFSKIDESKVEEMITTYREFNHEHHDELVT   82 (214)
T ss_pred             ccEEEEeCCCcCccCHHHHHHHHHHHHHHhCCCCCCHHHHHHHhCcCHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            57999999999999876543311      2210             0       1222222221       1   12457


Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc-
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR-  222 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~-  222 (254)
                      ++||+.++++.|+++|++++++||+.    +..+...|+.+|+..|++.++..++ ..+||.+   ...++.+...|.. 
T Consensus        83 ~~~g~~~~l~~L~~~g~~~~i~S~~~----~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p---~~~~~~~~~~~~~~  155 (214)
T PRK13288         83 EYETVYETLKTLKKQGYKLGIVTTKM----RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDP---EPVLKALELLGAKP  155 (214)
T ss_pred             cCcCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCChhceeEEEecCcCCCCCCCc---HHHHHHHHHcCCCH
Confidence            89999999999999999999999999    7788889999999998888887665 4456544   3344455666654 


Q ss_pred             -EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          223 -IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       223 -i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                       .+++|||+.+|+++|+ +|.+++.+.
T Consensus       156 ~~~~~iGDs~~Di~aa~~aG~~~i~v~  182 (214)
T PRK13288        156 EEALMVGDNHHDILAGKNAGTKTAGVA  182 (214)
T ss_pred             HHEEEECCCHHHHHHHHHCCCeEEEEc
Confidence             4899999999999997 788887763

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=99.63  E-value=5.3e-15  Score=131.27  Aligned_cols=100  Identities=11%  Similarity=0.139  Sum_probs=83.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++|+.|+++|++++++||++    +..+...|+.+|+..|++.++.+++ ..+||++   ......+++.|
T Consensus       107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~----~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~P---e~~~~a~~~l~  179 (260)
T PLN03243        107 LYRLRPGSREFVQALKKHEIPIAVASTRP----RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDP---EMFMYAAERLG  179 (260)
T ss_pred             CcccCCCHHHHHHHHHHCCCEEEEEeCcC----HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCH---HHHHHHHHHhC
Confidence            46789999999999999999999999999    7888889999999888888887766 4567754   34445667777


Q ss_pred             CcE--EEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YRI--WGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~i--~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ...  +++|||+.+|+++|+ +|.+++.+.+
T Consensus       180 ~~p~~~l~IgDs~~Di~aA~~aG~~~i~v~g  210 (260)
T PLN03243        180 FIPERCIVFGNSNSSVEAAHDGCMKCVAVAG  210 (260)
T ss_pred             CChHHeEEEcCCHHHHHHHHHcCCEEEEEec
Confidence            654  999999999999998 7999988864

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=99.63  E-value=4.6e-15  Score=128.77  Aligned_cols=98  Identities=15%  Similarity=0.097  Sum_probs=79.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||++    +..+...|+++|+..+++.+..+++ ..+||++   ...+..+...|
T Consensus        93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p---~~~~~~~~~l~  165 (229)
T PRK13226         93 QSQLFDGVEGMLQRLECAGCVWGIVTNKP----EYLARLILPQLGWEQRCAVLIGGDTLAERKPHP---LPLLVAAERIG  165 (229)
T ss_pred             cCeeCCCHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCchhcccEEEecCcCCCCCCCH---HHHHHHHHHhC
Confidence            46889999999999999999999999999    6777788999999888887777665 4567654   33444566666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      ..  .+++|||+.+|+.+|+ +|.+++.+
T Consensus       166 ~~p~~~l~IGDs~~Di~aA~~aG~~~i~v  194 (229)
T PRK13226        166 VAPTDCVYVGDDERDILAARAAGMPSVAA  194 (229)
T ss_pred             CChhhEEEeCCCHHHHHHHHHCCCcEEEE
Confidence            54  4999999999999997 79998866

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=99.62  E-value=6.2e-15  Score=136.76  Aligned_cols=100  Identities=12%  Similarity=0.121  Sum_probs=84.2

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++|+.|+++|++++++||++    +..+...|+++|+..|++.++..++ ..+||++   ......++..|
T Consensus       214 ~~~l~pGa~ElL~~Lk~~GiklaIaSn~~----~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~P---eifl~A~~~lg  286 (381)
T PLN02575        214 IYRLRTGSQEFVNVLMNYKIPMALVSTRP----RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDP---EMFIYAAQLLN  286 (381)
T ss_pred             CCCcCcCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCH---HHHHHHHHHcC
Confidence            46789999999999999999999999999    8899999999999989888888776 4567654   33334566667


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .|++|||+.+|+++|+ +|++++.+.+
T Consensus       287 l~Peecl~IGDS~~DIeAAk~AGm~~IgV~~  317 (381)
T PLN02575        287 FIPERCIVFGNSNQTVEAAHDARMKCVAVAS  317 (381)
T ss_pred             CCcccEEEEcCCHHHHHHHHHcCCEEEEECC
Confidence            54  4999999999999998 7999999875

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=99.62  E-value=3.1e-15  Score=131.36  Aligned_cols=100  Identities=23%  Similarity=0.250  Sum_probs=82.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++||+.++|+.|+++|++++++||++    +..+...|+++|+..|+ +.++.+++ ..+||++   ......++..
T Consensus        97 ~~~~~pg~~e~L~~L~~~g~~l~IvT~~~----~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p---~~~~~a~~~l  169 (253)
T TIGR01422        97 YSSPIPGVIEVIAYLRARGIKIGSTTGYT----REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAP---WMALKNAIEL  169 (253)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEECCCc----HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCH---HHHHHHHHHc
Confidence            46899999999999999999999999999    78888899999998874 77777665 4567654   3444566677


Q ss_pred             CCc---EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          220 GYR---IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy~---i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      |..   .+++|||+.+|+++|+ +|.+++.++.
T Consensus       170 ~~~~~~~~l~IGDs~~Di~aA~~aGi~~i~v~~  202 (253)
T TIGR01422       170 GVYDVAACVKVGDTVPDIEEGRNAGMWTVGLIL  202 (253)
T ss_pred             CCCCchheEEECCcHHHHHHHHHCCCeEEEEec
Confidence            752   4999999999999997 8999999864

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=99.62  E-value=4.8e-15  Score=127.12  Aligned_cols=100  Identities=24%  Similarity=0.289  Sum_probs=81.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC--CCCcEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV--GYERLIMRTAA-DKGKNAVTYKSEIRKQLLE  218 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~--~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~  218 (254)
                      ..+++||+.++++.|+++|++++++||+.    +......|+++|+.  .+++.++...+ ...||++   ......+++
T Consensus        85 ~~~l~~G~~~~L~~L~~~g~~~~ivT~~~----~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p---~~~~~a~~~  157 (220)
T TIGR03351        85 PPVALPGAEEAFRSLRSSGIKVALTTGFD----RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAP---DLILRAMEL  157 (220)
T ss_pred             CCccCCCHHHHHHHHHHCCCEEEEEeCCc----hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCH---HHHHHHHHH
Confidence            45799999999999999999999999999    77788899999997  77777777765 4566654   334445666


Q ss_pred             cCCc---EEEEEcCCcccccccc-cCCcE-EEeCC
Q 025360          219 EGYR---IWGNIGDQWSDLQGEC-TGNRT-FKLPN  248 (254)
Q Consensus       219 ~Gy~---i~~~IGDq~sDi~ga~-~g~r~-fklPN  248 (254)
                      .|..   .+++|||+.+|+++|+ +|.++ +.+..
T Consensus       158 ~~~~~~~~~~~igD~~~Di~aa~~aG~~~~i~~~~  192 (220)
T TIGR03351       158 TGVQDVQSVAVAGDTPNDLEAGINAGAGAVVGVLT  192 (220)
T ss_pred             cCCCChhHeEEeCCCHHHHHHHHHCCCCeEEEEec
Confidence            6653   5999999999999997 89998 77754

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=99.61  E-value=1.5e-14  Score=124.60  Aligned_cols=102  Identities=16%  Similarity=0.150  Sum_probs=85.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++++.|+++|++++++||..    +..+...|+.+|+..|++.++.+++ ..+||++   ...+..++..|
T Consensus        90 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  162 (222)
T PRK10826         90 TRPLLPGVREALALCKAQGLKIGLASASP----LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHP---EVYLNCAAKLG  162 (222)
T ss_pred             CCCCCCCHHHHHHHHHHCCCeEEEEeCCc----HHHHHHHHHhCcchhcccEEEEcccCCCCCCCH---HHHHHHHHHcC
Confidence            46899999999999999999999999999    7888889999999988887777655 3456644   34455677777


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                      ..  .|++|||+.+|+.+|+ +|.+++.+|++-
T Consensus       163 ~~~~~~~~igDs~~Di~aA~~aG~~~i~v~~~~  195 (222)
T PRK10826        163 VDPLTCVALEDSFNGMIAAKAARMRSIVVPAPE  195 (222)
T ss_pred             CCHHHeEEEcCChhhHHHHHHcCCEEEEecCCc
Confidence            64  4999999999999997 899999998763

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=99.61  E-value=8.2e-15  Score=121.91  Aligned_cols=96  Identities=19%  Similarity=0.248  Sum_probs=75.2

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.++|+.|+++|++++++||+. .     ....|+.+|+..+++.++.+.+ ...||.+   ...+..++..|.
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~-~-----~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p---~~~~~~~~~~~~  156 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASK-N-----APTVLEKLGLIDYFDAIVDPAEIKKGKPDP---EIFLAAAEGLGV  156 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCc-c-----HHHHHHhcCcHhhCcEEEehhhcCCCCCCh---HHHHHHHHHcCC
Confidence            4789999999999999999999999976 2     1356889999888887777655 4456543   444456666666


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      .  .+++|||+.+|+++|+ +|.+++.++
T Consensus       157 ~~~~~v~vgD~~~di~aA~~aG~~~i~v~  185 (185)
T TIGR01990       157 SPSECIGIEDAQAGIEAIKAAGMFAVGVG  185 (185)
T ss_pred             CHHHeEEEecCHHHHHHHHHcCCEEEecC
Confidence            4  4999999999999998 799988764

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=99.61  E-value=9.6e-15  Score=130.48  Aligned_cols=141  Identities=18%  Similarity=0.212  Sum_probs=101.6

Q ss_pred             CCCceEEEecCCccccchhhhhhhc------cCCC----------------------CCChHHHH-------HHHHh--C
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKR------YGCD----------------------PYDPAGFR-------AWALK--G  141 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~------~g~~----------------------~~~~~~~~-------~~~~~--~  141 (254)
                      +..+++|||+||||+|+.+.+....      +|..                      .++...+.       +....  .
T Consensus        60 ~~~k~vIFDlDGTLiDS~~~~~~a~~~~~~~~G~~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (273)
T PRK13225         60 QTLQAIIFDFDGTLVDSLPTVVAIANAHAPDFGYDPIDERDYAQLRQWSSRTIVRRAGLSPWQQARLLQRVQRQLGDCLP  139 (273)
T ss_pred             hhcCEEEECCcCccccCHHHHHHHHHHHHHHCCCCCCCHHHHHHHhCccHHHHHHHcCCCHHHHHHHHHHHHHHHHhhcc
Confidence            4578999999999999986554311      2211                      01111111       11111  2


Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..+++||+.++|+.|+++|++++++||..    +..+...|+..|+..+++.+...+....|     +......+++.|.
T Consensus       140 ~~~l~pg~~e~L~~L~~~gi~laIvSn~~----~~~~~~~L~~~gl~~~F~~vi~~~~~~~k-----~~~~~~~l~~~~~  210 (273)
T PRK13225        140 ALQLFPGVADLLAQLRSRSLCLGILSSNS----RQNIEAFLQRQGLRSLFSVVQAGTPILSK-----RRALSQLVAREGW  210 (273)
T ss_pred             cCCcCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCChhheEEEEecCCCCCC-----HHHHHHHHHHhCc
Confidence            45789999999999999999999999999    88888999999998888877665443333     2444555555554


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      .  .+++|||+.+|+++|+ +|.+++.++.
T Consensus       211 ~p~~~l~IGDs~~Di~aA~~AG~~~I~v~~  240 (273)
T PRK13225        211 QPAAVMYVGDETRDVEAARQVGLIAVAVTW  240 (273)
T ss_pred             ChhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence            4  5999999999999998 7999988754

>PRK11587 putative phosphatase; Provisional

Probab=99.61  E-value=1e-14  Score=125.40  Aligned_cols=101  Identities=18%  Similarity=0.234  Sum_probs=77.7

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...+++||+.++|+.|+++|++++++||++    +..+...|...|+. ++..++..++ ..+||++   ......++..
T Consensus        80 ~~~~~~pg~~e~L~~L~~~g~~~~ivTn~~----~~~~~~~l~~~~l~-~~~~i~~~~~~~~~KP~p---~~~~~~~~~~  151 (218)
T PRK11587         80 EGITALPGAIALLNHLNKLGIPWAIVTSGS----VPVASARHKAAGLP-APEVFVTAERVKRGKPEP---DAYLLGAQLL  151 (218)
T ss_pred             cCceeCcCHHHHHHHHHHcCCcEEEEcCCC----chHHHHHHHhcCCC-CccEEEEHHHhcCCCCCc---HHHHHHHHHc
Confidence            356889999999999999999999999998    55566778888986 4455666544 4556654   3334456666


Q ss_pred             CC--cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          220 GY--RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      |.  ..+++|||+.+|+++|+ +|.+++.+.++
T Consensus       152 g~~p~~~l~igDs~~di~aA~~aG~~~i~v~~~  184 (218)
T PRK11587        152 GLAPQECVVVEDAPAGVLSGLAAGCHVIAVNAP  184 (218)
T ss_pred             CCCcccEEEEecchhhhHHHHHCCCEEEEECCC
Confidence            65  45999999999999998 78998888653

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=99.60  E-value=1.4e-14  Score=124.13  Aligned_cols=102  Identities=19%  Similarity=0.185  Sum_probs=81.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++|+.|+++|++++++||..    +......|+++|+..|++.++.+++ ...||++   ...+..+++.|
T Consensus        92 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~---~~~~~~~~~~~  164 (221)
T TIGR02253        92 YLRVYPGVRDTLMELRESGYRLGIITDGL----PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHP---KIFYAALKRLG  164 (221)
T ss_pred             hCCCCCCHHHHHHHHHHCCCEEEEEeCCc----hHHHHHHHHhCChHHhccEEEEeccCCCCCCCH---HHHHHHHHHcC
Confidence            35799999999999999999999999998    6667788999999888776766655 4567654   33444566667


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEeCCCC
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp~  250 (254)
                      ..  .+++|||++ +|+.+|+ +|.+++.++.+.
T Consensus       165 ~~~~~~~~igDs~~~di~~A~~aG~~~i~~~~~~  198 (221)
T TIGR02253       165 VKPEEAVMVGDRLDKDIKGAKNLGMKTVWINQGK  198 (221)
T ss_pred             CChhhEEEECCChHHHHHHHHHCCCEEEEECCCC
Confidence            64  599999998 8999998 899999887653

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=99.60  E-value=1.3e-14  Score=123.40  Aligned_cols=99  Identities=21%  Similarity=0.249  Sum_probs=80.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++++.|+++|++++++||..    +..+...|+++|+..+++.++..++ ...||.+   ......+++.|
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p---~~~~~~~~~~~  155 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKP----TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHP---DPLLLAAERLG  155 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCCh---HHHHHHHHHcC
Confidence            35789999999999999999999999999    7888899999999888887777655 3456643   34445666666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      ..  .+++|||+.+|+.+++ +|..++.+.
T Consensus       156 ~~~~~~~~igDs~~d~~aa~~aG~~~i~v~  185 (213)
T TIGR01449       156 VAPQQMVYVGDSRVDIQAARAAGCPSVLLT  185 (213)
T ss_pred             CChhHeEEeCCCHHHHHHHHHCCCeEEEEc
Confidence            54  4999999999999997 788888774

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=99.60  E-value=2.4e-14  Score=120.97  Aligned_cols=101  Identities=18%  Similarity=0.140  Sum_probs=80.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||.+    .......|+++|+..+++.++.+++ ...||.+   ...+..+...|
T Consensus        90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~----~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~---~~~~~~~~~~~  162 (198)
T TIGR01428        90 RLPPHPDVPAGLRALKERGYRLAILSNGS----PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAP---QVYQLALEALG  162 (198)
T ss_pred             cCCCCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHCCChhhhheeEehhhcCCCCCCH---HHHHHHHHHhC
Confidence            46789999999999999999999999999    6777788999999877777777665 4567654   33333455556


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.+|. +|.+++.+..+
T Consensus       163 ~~p~~~~~vgD~~~Di~~A~~~G~~~i~v~r~  194 (198)
T TIGR01428       163 VPPDEVLFVASNPWDLGGAKKFGFKTAWVNRP  194 (198)
T ss_pred             CChhhEEEEeCCHHHHHHHHHCCCcEEEecCC
Confidence            54  4899999999999997 89999888643

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=99.59  E-value=1.5e-14  Score=122.99  Aligned_cols=99  Identities=23%  Similarity=0.298  Sum_probs=79.3

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...+++||+.+++++|+++|++++++||+.    +..+...|+..|+..+++.++..++ ..+||.+   ...+..+++.
T Consensus        72 ~~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~---~~~~~~~~~~  144 (205)
T TIGR01454        72 GEVEVFPGVPELLAELRADGVGTAIATGKS----GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAP---DIVREALRLL  144 (205)
T ss_pred             cccccCCCHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHHHcCChhheeeEEecCcCCCCCCCh---HHHHHHHHHc
Confidence            356889999999999999999999999999    7778888999999887777766654 3456543   4444556666


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      |..  .+++|||+.+|+.+|+ +|.+++.+
T Consensus       145 ~~~~~~~l~igD~~~Di~aA~~~Gi~~i~~  174 (205)
T TIGR01454       145 DVPPEDAVMVGDAVTDLASARAAGTATVAA  174 (205)
T ss_pred             CCChhheEEEcCCHHHHHHHHHcCCeEEEE
Confidence            754  4999999999999998 78887765

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.58  E-value=2.7e-14  Score=128.36  Aligned_cols=169  Identities=16%  Similarity=0.155  Sum_probs=114.9

Q ss_pred             cccchHHHHHhhhcCCcchHHHHHHHHHHHHHH---HH----hhhcCCCCceEEEecCCccccchhhhhhhccCCCCCCh
Q 025360           59 VPTQCLRYVESYMIGGQYDRDVELVVEQILCYV---NE----VVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDP  131 (254)
Q Consensus        59 ~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~---~~----~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~  131 (254)
                      -+.+|.+.+...   +......+.+..+...+.   ..    +.....++++++||+|||+.++..        ..+|  
T Consensus       112 ~~e~~~~R~~~R---~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~D~dgtl~~~~~--------~~~~--  178 (300)
T PHA02530        112 PVEELVKRNRKR---GERAVPEDVLRSMFKQMKEYRGLVWPVYTADPGLPKAVIFDIDGTLAKMGG--------RSPY--  178 (300)
T ss_pred             CHHHHHHHHHcc---CcCCCCHHHHHHHHHHHHHhcCCCCceeccCCCCCCEEEEECCCcCcCCCC--------CCcc--
Confidence            345666655443   323234455554444442   21    122234568999999999998752        1233  


Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--------EEEecCCCCCC
Q 025360          132 AGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--------LIMRTAADKGK  203 (254)
Q Consensus       132 ~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--------lilr~~~~~~k  203 (254)
                          +|.......++|++.++++.|+++|++++++|||+ +..+..+.++|...|+. ++.        ++||.. ..+|
T Consensus       179 ----~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~-~~~~~~~l~~l~~~~~~-f~~i~~~~~~~~~~~~~-~~~k  251 (300)
T PHA02530        179 ----DWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD-GVCEEDTVEWLRQTDIW-FDDLIGRPPDMHFQREQ-GDKR  251 (300)
T ss_pred             ----chhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC-hhhHHHHHHHHHHcCCc-hhhhhCCcchhhhcccC-CCCC
Confidence                35556678999999999999999999999999999 88888999999887732 222        233333 2457


Q ss_pred             CCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEEEeC
Q 025360          204 NAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       204 p~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      |++..+....+++....++++++|||+.+|+.+++ +|..++.+.
T Consensus       252 p~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~i~v~  296 (300)
T PHA02530        252 PDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLECWQVA  296 (300)
T ss_pred             CcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeEEEec
Confidence            77655554444443334578999999999999998 789888874

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=99.56  E-value=3.6e-14  Score=125.79  Aligned_cols=100  Identities=20%  Similarity=0.200  Sum_probs=79.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC-CcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY-ERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~-~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++||+.++|+.|+++|++++++||.+    +..+...|+.+|+..+ ++.++..++ ..+||++   ......+.+.
T Consensus        99 ~~~~~pg~~elL~~L~~~g~~l~I~T~~~----~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p---~~~~~a~~~l  171 (267)
T PRK13478         99 YATPIPGVLEVIAALRARGIKIGSTTGYT----REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYP---WMALKNAIEL  171 (267)
T ss_pred             cCCCCCCHHHHHHHHHHCCCEEEEEcCCc----HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCCh---HHHHHHHHHc
Confidence            46789999999999999999999999999    7777888888887665 366766655 4556654   3344566667


Q ss_pred             CC---cEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          220 GY---RIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy---~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      |.   ..+++|||+.+|+++|+ +|.+++.+..
T Consensus       172 ~~~~~~e~l~IGDs~~Di~aA~~aG~~~i~v~~  204 (267)
T PRK13478        172 GVYDVAACVKVDDTVPGIEEGLNAGMWTVGVIL  204 (267)
T ss_pred             CCCCCcceEEEcCcHHHHHHHHHCCCEEEEEcc
Confidence            75   35999999999999998 7999888753

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=99.55  E-value=9e-14  Score=124.01  Aligned_cols=99  Identities=19%  Similarity=0.190  Sum_probs=78.7

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++||+.++++.|+++|++++++||.+    +......|.++|+..+++.+..++. ...||.+   ..+...++..|.
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~----~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p---~~~~~~~~~~g~  172 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKP----ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDP---AALLFVMKMAGV  172 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCc----HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCc---HHHHHHHHHhCC
Confidence            5689999999999999999999999999    5667788889999888777777665 3456543   233344555665


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      .  .+++|||+.+|+++++ +|.+++.+++
T Consensus       173 ~~~~~l~IGD~~~Di~aA~~aGi~~i~v~~  202 (272)
T PRK13223        173 PPSQSLFVGDSRSDVLAAKAAGVQCVALSY  202 (272)
T ss_pred             ChhHEEEECCCHHHHHHHHHCCCeEEEEec
Confidence            4  4999999999999998 8888888765

>PLN02940 riboflavin kinase

Probab=99.55  E-value=7.1e-14  Score=130.43  Aligned_cols=101  Identities=17%  Similarity=0.200  Sum_probs=82.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH-hCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH-NQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~-~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++||+.++++.|+++|++++++||++    +..+...|+ ..|+..+++.++.+++ ..+||++   ...+..++..
T Consensus        91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~----~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p---~~~~~a~~~l  163 (382)
T PLN02940         91 NIKALPGANRLIKHLKSHGVPMALASNSP----RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSP---DIFLEAAKRL  163 (382)
T ss_pred             cCCCCcCHHHHHHHHHHCCCcEEEEeCCc----HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCH---HHHHHHHHHc
Confidence            46789999999999999999999999999    677777887 6899888888888776 4566644   3444456666


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      |..  .|++|||+.+|+++|+ +|.+++.++..
T Consensus       164 gv~p~~~l~VGDs~~Di~aA~~aGi~~I~v~~g  196 (382)
T PLN02940        164 NVEPSNCLVIEDSLPGVMAGKAAGMEVIAVPSI  196 (382)
T ss_pred             CCChhHEEEEeCCHHHHHHHHHcCCEEEEECCC
Confidence            654  4999999999999997 89999999753

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=99.54  E-value=7.4e-14  Score=116.13  Aligned_cols=95  Identities=18%  Similarity=0.207  Sum_probs=74.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++++.|+++|++++++||+.      .....|+..|+..|++.++..++ ..+||.+   ......+++.|
T Consensus        86 ~~~~~~g~~~~l~~l~~~g~~i~i~S~~~------~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~---~~~~~~~~~~~  156 (185)
T TIGR02009        86 GAEVLPGIENFLKRLKKKGIAVGLGSSSK------NADRILAKLGLTDYFDAIVDADEVKEGKPHP---ETFLLAAELLG  156 (185)
T ss_pred             CCCCCcCHHHHHHHHHHcCCeEEEEeCch------hHHHHHHHcChHHHCCEeeehhhCCCCCCCh---HHHHHHHHHcC
Confidence            46899999999999999999999999974      34668889999888877777654 3456543   33344566666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEE
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFK  245 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fk  245 (254)
                      ..  .+++|||+..|+++|+ +|.+++.
T Consensus       157 ~~~~~~v~IgD~~~di~aA~~~G~~~i~  184 (185)
T TIGR02009       157 VSPNECVVFEDALAGVQAARAAGMFAVA  184 (185)
T ss_pred             CCHHHeEEEeCcHhhHHHHHHCCCeEee
Confidence            64  4899999999999997 7887764

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.54  E-value=2.3e-14  Score=136.57  Aligned_cols=100  Identities=12%  Similarity=0.089  Sum_probs=81.2

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..+++||+.++|++|+++|++++++||+.    +..+...|+.+|+..|++.++..++..++|.+   ......+++.+.
T Consensus       328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~----~~~~~~~l~~~~l~~~f~~i~~~d~v~~~~kP---~~~~~al~~l~~  400 (459)
T PRK06698        328 KGALYPNVKEIFTYIKENNCSIYIASNGL----TEYLRAIVSYYDLDQWVTETFSIEQINSLNKS---DLVKSILNKYDI  400 (459)
T ss_pred             CCCcCCCHHHHHHHHHHCCCeEEEEeCCc----hHHHHHHHHHCCcHhhcceeEecCCCCCCCCc---HHHHHHHHhcCc
Confidence            46889999999999999999999999999    88888999999998888888887664322222   223344555566


Q ss_pred             cEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          222 RIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      +.|++|||+.+|+++|+ +|.+++.++.
T Consensus       401 ~~~v~VGDs~~Di~aAk~AG~~~I~v~~  428 (459)
T PRK06698        401 KEAAVVGDRLSDINAAKDNGLIAIGCNF  428 (459)
T ss_pred             ceEEEEeCCHHHHHHHHHCCCeEEEEeC
Confidence            78999999999999998 8999988854

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=99.53  E-value=1.6e-13  Score=114.72  Aligned_cols=98  Identities=12%  Similarity=0.094  Sum_probs=77.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++|+ .+++..|+++ ++++++||.+    +......|+++|+..|++.++..++ ..+||++.   .....+.+.|
T Consensus        86 ~~~~~~~-~e~L~~L~~~-~~l~I~T~~~----~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~---~~~~~~~~~~  156 (188)
T PRK10725         86 SVEPLPL-IEVVKAWHGR-RPMAVGTGSE----SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPD---TFLRCAQLMG  156 (188)
T ss_pred             cCCCccH-HHHHHHHHhC-CCEEEEcCCc----hHHHHHHHHhCCcHhHceEEEehhhccCCCCChH---HHHHHHHHcC
Confidence            3467786 6999999876 8999999999    7788889999999988888888766 45676552   2333556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+.+|+++|+ +|.+++.+..
T Consensus       157 ~~~~~~l~igDs~~di~aA~~aG~~~i~~~~  187 (188)
T PRK10725        157 VQPTQCVVFEDADFGIQAARAAGMDAVDVRL  187 (188)
T ss_pred             CCHHHeEEEeccHhhHHHHHHCCCEEEeecC
Confidence            54  4999999999999998 7999888753

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=99.53  E-value=1e-13  Score=117.40  Aligned_cols=88  Identities=15%  Similarity=0.044  Sum_probs=69.8

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc-
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR-  222 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~-  222 (254)
                      .+.+++.++|+.|+++|++++++||++    +..+...|+..|+..|++.++..++...||.+..   ....+++.|.+ 
T Consensus       106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~KP~p~~---~~~~~~~~~~~~  178 (197)
T TIGR01548       106 ETLLTPKGLLRELHRAPKGMAVVTGRP----RKDAAKFLTTHGLEILFPVQIWMEDCPPKPNPEP---LILAAKALGVEA  178 (197)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEECCCC----HHHHHHHHHHcCchhhCCEEEeecCCCCCcCHHH---HHHHHHHhCcCc
Confidence            345566999999999999999999999    8888899999999888888887766434765532   33345555654 


Q ss_pred             -EEEEEcCCcccccccc
Q 025360          223 -IWGNIGDQWSDLQGEC  238 (254)
Q Consensus       223 -i~~~IGDq~sDi~ga~  238 (254)
                       .+++|||+.+|+.+|+
T Consensus       179 ~~~i~vGD~~~Di~aA~  195 (197)
T TIGR01548       179 CHAAMVGDTVDDIITGR  195 (197)
T ss_pred             ccEEEEeCCHHHHHHHH
Confidence             5999999999999986

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=99.52  E-value=3.5e-13  Score=115.55  Aligned_cols=100  Identities=18%  Similarity=0.226  Sum_probs=79.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++++.|+++|++++++||..    +......|+.+|+..+++.++..+. ...||.+   ...+..++..|
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~~  163 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKP----TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDP---APLLLACEKLG  163 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHcCCccCccEEEcCCCCCCCCcCh---HHHHHHHHHcC
Confidence            46799999999999999999999999999    5666788999999888887777655 3455533   34444556656


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+.+|+.+++ +|..++.++.
T Consensus       164 ~~~~~~i~igD~~~Di~~a~~~g~~~i~v~~  194 (226)
T PRK13222        164 LDPEEMLFVGDSRNDIQAARAAGCPSVGVTY  194 (226)
T ss_pred             CChhheEEECCCHHHHHHHHHCCCcEEEECc
Confidence            54  5999999999999998 7888888753

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=99.52  E-value=8.1e-14  Score=113.14  Aligned_cols=126  Identities=21%  Similarity=0.213  Sum_probs=89.2

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-------
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF-------  174 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~-------  174 (254)
                      ++++||+||||.++...+         | ...|.+      ..++||+.++++.|+++|++++++||.+ ...       
T Consensus         1 ~~~~~d~dgtl~~~~~~~---------~-~~~~~~------~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~-~~~~~~~~~~   63 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSD---------Y-PRSLDD------WQLRPGAVPALLTLRAAGYTVVVVTNQS-GIGRGYFSAE   63 (147)
T ss_pred             CeEEEeCCCceeccCCcc---------c-CCCHHH------eEEcCChHHHHHHHHHCCCEEEEEeCCC-cccCCcCCHH
Confidence            479999999999986311         1 112433      3589999999999999999999999987 310       


Q ss_pred             -----HHHHHHHHHhCCCCCCCcEEEec----CC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCC
Q 025360          175 -----GQVTRDNLHNQGFVGYERLIMRT----AA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGN  241 (254)
Q Consensus       175 -----r~~T~~~L~~~G~~~~~~lilr~----~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~  241 (254)
                           ...+...|+++|+. +...+...    +. ..+||.+   ......++..|..  .+++|||+..|+++|+ +|.
T Consensus        64 ~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~KP~~---~~~~~~~~~~~~~~~e~i~IGDs~~Di~~A~~~Gi  139 (147)
T TIGR01656        64 AFRAPNGRVLELLRQLGVA-VDGVLFCPHHPADNCSCRKPKP---GLILEALKRLGVDASRSLVVGDRLRDLQAARNAGL  139 (147)
T ss_pred             HHHHHHHHHHHHHHhCCCc-eeEEEECCCCCCCCCCCCCCCH---HHHHHHHHHcCCChHHEEEEcCCHHHHHHHHHCCC
Confidence                 24566788889987 22333332    11 2345543   3444455666655  4999999999999997 899


Q ss_pred             cEEEeCC
Q 025360          242 RTFKLPN  248 (254)
Q Consensus       242 r~fklPN  248 (254)
                      +++.+|.
T Consensus       140 ~~v~i~~  146 (147)
T TIGR01656       140 AAVLLVD  146 (147)
T ss_pred             CEEEecC
Confidence            9999885

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK09449 dUMP phosphatase; Provisional

Probab=99.49  E-value=2.1e-13  Score=117.24  Aligned_cols=97  Identities=25%  Similarity=0.332  Sum_probs=78.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++||+.++++.|+ +|++++++||..    +..+...|+++|+..+++.++.+++ ..+||++   ......+++.|.
T Consensus        94 ~~~~~g~~~~L~~L~-~~~~~~i~Tn~~----~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p---~~~~~~~~~~~~  165 (224)
T PRK09449         94 CTPLPGAVELLNALR-GKVKMGIITNGF----TELQQVRLERTGLRDYFDLLVISEQVGVAKPDV---AIFDYALEQMGN  165 (224)
T ss_pred             CccCccHHHHHHHHH-hCCeEEEEeCCc----HHHHHHHHHhCChHHHcCEEEEECccCCCCCCH---HHHHHHHHHcCC
Confidence            579999999999999 689999999998    7777888999999887777776655 4567654   334445666664


Q ss_pred             ---cEEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360          222 ---RIWGNIGDQW-SDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       222 ---~i~~~IGDq~-sDi~ga~-~g~r~fklP  247 (254)
                         ..+++|||+. +|+++|+ +|.+++.+.
T Consensus       166 ~~~~~~~~vgD~~~~Di~~A~~aG~~~i~~~  196 (224)
T PRK09449        166 PDRSRVLMVGDNLHSDILGGINAGIDTCWLN  196 (224)
T ss_pred             CCcccEEEEcCCcHHHHHHHHHCCCcEEEEC
Confidence               3599999998 6999997 799988875

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=99.49  E-value=5.3e-13  Score=119.94  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCC---CCCCCcEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQG---FVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLE  218 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G---~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~  218 (254)
                      .+++||+.++|+.|+++|++++++||.+    +......|...+   +..++..+ .+++ ..+||.+   ......+..
T Consensus       143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~----~~~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p---~~~~~a~~~  214 (286)
T PLN02779        143 LPLRPGVLRLMDEALAAGIKVAVCSTSN----EKAVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDP---DIYNLAAET  214 (286)
T ss_pred             CCchhhHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHhccccccCceEEE-eccccCCCCCCH---HHHHHHHHH
Confidence            4799999999999999999999999998    566666666653   22233444 4443 3456654   333345566


Q ss_pred             cCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          219 EGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       219 ~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .|..  .+++|||+.+|+++|+ +|.+++.+++.
T Consensus       215 ~~~~p~~~l~IGDs~~Di~aA~~aG~~~i~v~~g  248 (286)
T PLN02779        215 LGVDPSRCVVVEDSVIGLQAAKAAGMRCIVTKSS  248 (286)
T ss_pred             hCcChHHEEEEeCCHHhHHHHHHcCCEEEEEccC
Confidence            6665  4999999999999998 79999998764

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.49  E-value=1.3e-13  Score=109.42  Aligned_cols=120  Identities=22%  Similarity=0.181  Sum_probs=84.8

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-----HH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF-----GQ  176 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~-----r~  176 (254)
                      ++++||+||||.++.++..            .|.      ...++|++.++++.|+++|++++++||+. ...     ++
T Consensus         1 k~~~~D~dgtL~~~~~~~~------------~~~------~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~-~~~~~~~~~~   61 (132)
T TIGR01662         1 KGVVLDLDGTLTDDVPYVD------------DED------ERILYPEVPDALAELKEAGYKVVIVTNQS-GIGRGKFSSG   61 (132)
T ss_pred             CEEEEeCCCceecCCCCCC------------CHH------HheeCCCHHHHHHHHHHCCCEEEEEECCc-cccccHHHHH
Confidence            5899999999997532211            121      25689999999999999999999999987 544     45


Q ss_pred             HHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHc-CC--cEEEEEcC-Ccccccccc-cCCcEEEe
Q 025360          177 VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE-GY--RIWGNIGD-QWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       177 ~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~-Gy--~i~~~IGD-q~sDi~ga~-~g~r~fkl  246 (254)
                      .+.+.|+.+|+. ++..+...  ...||.+   ......+.+. +.  ..+++||| ..+|+.+|+ +|.+++.+
T Consensus        62 ~~~~~l~~~~l~-~~~~~~~~--~~~KP~~---~~~~~~~~~~~~~~~~~~v~IGD~~~~Di~~A~~~Gi~~i~~  130 (132)
T TIGR01662        62 RVARRLEELGVP-IDVLYACP--HCRKPKP---GMFLEALKRFNEIDPEESVYVGDQDLTDLQAAKRAGLAFILV  130 (132)
T ss_pred             HHHHHHHHCCCC-EEEEEECC--CCCCCCh---HHHHHHHHHcCCCChhheEEEcCCCcccHHHHHHCCCeEEEe
Confidence            567788999997 33344444  3445543   2222344444 34  45999999 689999997 78887765

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=99.48  E-value=3.5e-13  Score=112.71  Aligned_cols=94  Identities=19%  Similarity=0.103  Sum_probs=72.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCC-C----CCCCcccHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAAD-K----GKNAVTYKSEIRKQL  216 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-~----~kp~~~yK~~~r~~l  216 (254)
                      ..+++||+.++|+.|+   ++++++||.+    +..+...|+++|+..|++.++..++. .    .||.+   ...+..+
T Consensus        82 ~~~~~~g~~~~L~~L~---~~~~i~Tn~~----~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p---~~~~~~~  151 (184)
T TIGR01993        82 KLKPDPELRNLLLRLP---GRKIIFTNGD----RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSP---QAYEKAL  151 (184)
T ss_pred             hCCCCHHHHHHHHhCC---CCEEEEeCCC----HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCH---HHHHHHH
Confidence            3568999999999997   5799999999    77888999999998888777776553 3    36654   3333445


Q ss_pred             HHcCCc--EEEEEcCCcccccccc-cCCcEEE
Q 025360          217 LEEGYR--IWGNIGDQWSDLQGEC-TGNRTFK  245 (254)
Q Consensus       217 ~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fk  245 (254)
                      ++.|.+  .+++|||+..|+++|+ +|.+++.
T Consensus       152 ~~~~~~~~~~l~vgD~~~di~aA~~~G~~~i~  183 (184)
T TIGR01993       152 REAGVDPERAIFFDDSARNIAAAKALGMKTVL  183 (184)
T ss_pred             HHhCCCccceEEEeCCHHHHHHHHHcCCEEee
Confidence            555654  4899999999999998 7888765

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=99.48  E-value=2.6e-13  Score=115.13  Aligned_cols=101  Identities=15%  Similarity=0.156  Sum_probs=76.5

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      .+++||+.++++.|+++|++++++||.+    +.....++.. .|+..+++.++.+.+ ..+||++..   ....+++.|
T Consensus        83 ~~~~~g~~e~L~~l~~~g~~~~i~Sn~~----~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~---~~~~~~~~~  155 (199)
T PRK09456         83 VALRPEVIAIMHKLREQGHRVVVLSNTN----RLHTTFWPEEYPEVRAAADHIYLSQDLGMRKPEARI---YQHVLQAEG  155 (199)
T ss_pred             hccCHHHHHHHHHHHhCCCcEEEEcCCc----hhhHHHHHhhchhHHHhcCEEEEecccCCCCCCHHH---HHHHHHHcC
Confidence            4689999999999999999999999998    4444455554 367666666666555 566776522   223456666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                      .+  .+++|||+..|+.+|+ +|.+++.++++.
T Consensus       156 ~~p~~~l~vgD~~~di~aA~~aG~~~i~~~~~~  188 (199)
T PRK09456        156 FSAADAVFFDDNADNIEAANALGITSILVTDKQ  188 (199)
T ss_pred             CChhHeEEeCCCHHHHHHHHHcCCEEEEecCCc
Confidence            54  4999999999999998 899999998863

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=99.48  E-value=3.9e-13  Score=113.90  Aligned_cols=93  Identities=24%  Similarity=0.340  Sum_probs=72.4

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR  222 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~  222 (254)
                      .++||+.++++.|+++|++++++||.+    +. ....|+..|+..+++.++.+.+ ..+||.+   ...+..+++.|..
T Consensus       105 ~~~~g~~~~l~~L~~~g~~~~i~Sn~~----~~-~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~---~~~~~~~~~~~~~  176 (203)
T TIGR02252       105 QVYPDAIKLLKDLRERGLILGVISNFD----SR-LRGLLEALGLLEYFDFVVTSYEVGAEKPDP---KIFQEALERAGIS  176 (203)
T ss_pred             eeCcCHHHHHHHHHHCCCEEEEEeCCc----hh-HHHHHHHCCcHHhcceEEeecccCCCCCCH---HHHHHHHHHcCCC
Confidence            689999999999999999999999987    33 3567889999877777766655 4456654   3344456666764


Q ss_pred             --EEEEEcCCc-ccccccc-cCCcEE
Q 025360          223 --IWGNIGDQW-SDLQGEC-TGNRTF  244 (254)
Q Consensus       223 --i~~~IGDq~-sDi~ga~-~g~r~f  244 (254)
                        .+++|||+. +|+++|+ +|.+++
T Consensus       177 ~~~~~~IgD~~~~Di~~A~~aG~~~i  202 (203)
T TIGR02252       177 PEEALHIGDSLRNDYQGARAAGWRAL  202 (203)
T ss_pred             hhHEEEECCCchHHHHHHHHcCCeee
Confidence              499999998 8999997 787764

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.47  E-value=1.4e-13  Score=106.89  Aligned_cols=118  Identities=19%  Similarity=0.183  Sum_probs=85.9

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL  182 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L  182 (254)
                      +++||+||||....+....                  .....+.|++.++++.|+++|++++++||+.    +.....++
T Consensus         1 ~~vfD~D~tl~~~~~~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~----~~~~~~~~   58 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE------------------IEELELYPGVKEALKELKEKGIKLALATNKS----RREVLELL   58 (139)
T ss_pred             CeEEccCCceEccCccccc------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCch----HHHHHHHH
Confidence            4799999999987643321                  2346899999999999999999999999999    88899999


Q ss_pred             HhCCCCCCCcEEEecCC-CCC----------------CCCcccHHHHHHHHHHcC--CcEEEEEcCCccccccccc-CCc
Q 025360          183 HNQGFVGYERLIMRTAA-DKG----------------KNAVTYKSEIRKQLLEEG--YRIWGNIGDQWSDLQGECT-GNR  242 (254)
Q Consensus       183 ~~~G~~~~~~lilr~~~-~~~----------------kp~~~yK~~~r~~l~~~G--y~i~~~IGDq~sDi~ga~~-g~r  242 (254)
                      +..|+..+++.++...+ ...                ||....   ....+...+  ...+++|||+.+|+..+.. |.+
T Consensus        59 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~igD~~~d~~~~~~~g~~  135 (139)
T cd01427          59 EELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDK---LLAALKLLGVDPEEVLMVGDSLNDIEMAKAAGGL  135 (139)
T ss_pred             HHcCCchhhhheeccchhhhhcccccccccccccccCCCCHHH---HHHHHHHcCCChhhEEEeCCCHHHHHHHHHcCCc
Confidence            99998655554554433 211                332222   222333333  4569999999999999985 877


Q ss_pred             EEE
Q 025360          243 TFK  245 (254)
Q Consensus       243 ~fk  245 (254)
                      ++.
T Consensus       136 ~i~  138 (139)
T cd01427         136 GVA  138 (139)
T ss_pred             eee
Confidence            764

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=99.45  E-value=1.3e-12  Score=108.02  Aligned_cols=95  Identities=18%  Similarity=0.182  Sum_probs=71.9

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++||+.++++.|+++|++++++||.+    +.. ...+.+.|+..+++.++.+++ ..+||.+   ...+..+++.|.
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~----~~~-~~~~~~~~l~~~f~~i~~~~~~~~~KP~~---~~~~~~~~~~~~  155 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSP----RDH-AVLVQELGLRDLFDVVIFSGDVGRGKPDP---DIYLLALKKLGL  155 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCc----hHH-HHHHHhcCCHHHCCEEEEcCCCCCCCCCH---HHHHHHHHHcCC
Confidence            6789999999999999999999999999    444 444555899877777666544 4566654   222334555554


Q ss_pred             --cEEEEEcCCcccccccc-cCCcEEE
Q 025360          222 --RIWGNIGDQWSDLQGEC-TGNRTFK  245 (254)
Q Consensus       222 --~i~~~IGDq~sDi~ga~-~g~r~fk  245 (254)
                        ..+++|||+..|+.+|+ +|.+++.
T Consensus       156 ~~~~~~~vgD~~~di~aA~~~G~~~i~  182 (183)
T TIGR01509       156 KPEECLFVDDSPAGIEAAKAAGMHTVL  182 (183)
T ss_pred             CcceEEEEcCCHHHHHHHHHcCCEEEe
Confidence              46999999999999998 7887764

HAD subfamilies caused by an overly broad single model.

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=99.45  E-value=9.8e-13  Score=112.95  Aligned_cols=95  Identities=13%  Similarity=0.112  Sum_probs=75.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++||+.++++.|   +++++++||.+    +..+...|+.+|+..|+ +.++.+.+ ...||++   +.....+++.
T Consensus        86 ~~~~~~gv~~~L~~L---~~~~~ivTn~~----~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p---~~~~~a~~~~  155 (221)
T PRK10563         86 ELEPIAGANALLESI---TVPMCVVSNGP----VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDP---ALMFHAAEAM  155 (221)
T ss_pred             cCCcCCCHHHHHHHc---CCCEEEEeCCc----HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCCh---HHHHHHHHHc
Confidence            467899999999988   49999999998    77888899999998887 46766644 4567654   3333456666


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      |..  .|++|||+++|+++|. +|..++.+
T Consensus       156 ~~~p~~~l~igDs~~di~aA~~aG~~~i~~  185 (221)
T PRK10563        156 NVNVENCILVDDSSAGAQSGIAAGMEVFYF  185 (221)
T ss_pred             CCCHHHeEEEeCcHhhHHHHHHCCCEEEEE
Confidence            664  4999999999999998 78888876

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=99.45  E-value=2.9e-13  Score=109.69  Aligned_cols=128  Identities=19%  Similarity=0.244  Sum_probs=85.9

Q ss_pred             eEEEecCCccccchhhhhhhc------cCC----------CCCC-----hHHHHHHHH-hCCCCCchHHHHHHHHHHHCC
Q 025360          103 AWILDVDDTCISNVYYYKGKR------YGC----------DPYD-----PAGFRAWAL-KGGCPAIPGVLVLFNKLIESG  160 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~------~g~----------~~~~-----~~~~~~~~~-~~~~~~~pg~~ell~~L~~~G  160 (254)
                      +|+||+||||+|+.+.+....      +|.          .+..     ...|.+... ......+||+.+++..|+++|
T Consensus         1 ~iifD~DGTL~d~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~l~~L~~~g   80 (154)
T TIGR01549         1 AILFDIDGTLVDSSFAIRRAFEETLEEFGEDFQALKALRGLAEELLYRIATSFEELLGYDAEEAYIRGAADLLKRLKEAG   80 (154)
T ss_pred             CeEecCCCcccccHHHHHHHHHHHHHHhcccHHHHHHHHccChHHHHHHHHHHHHHhCcchhheeccCHHHHHHHHHHCc
Confidence            489999999999975443211      121          1110     112222221 134567899999999999999


Q ss_pred             CeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc-EEEEEcCCcccccccc
Q 025360          161 LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR-IWGNIGDQWSDLQGEC  238 (254)
Q Consensus       161 ~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~-i~~~IGDq~sDi~ga~  238 (254)
                      ++++++||+.    +......++.. +..++..+...++..+||.+   ......+++.|.. .+++|||+..|+++|+
T Consensus        81 ~~~~i~T~~~----~~~~~~~~~~~-l~~~f~~i~~~~~~~~Kp~~---~~~~~~~~~~~~~~~~l~iGDs~~Di~aa~  151 (154)
T TIGR01549        81 IKLGIISNGS----LRAQKLLLRKH-LGDYFDLILGSDEFGAKPEP---EIFLAALESLGLPPEVLHVGDNLNDIEGAR  151 (154)
T ss_pred             CeEEEEeCCc----hHHHHHHHHHH-HHhcCcEEEecCCCCCCcCH---HHHHHHHHHcCCCCCEEEEeCCHHHHHHHH
Confidence            9999999999    66666677766 55566666665543367644   4444455655654 5899999999999987

HAD subfamilies caused by an overly broad single model.

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=99.44  E-value=3.4e-13  Score=109.54  Aligned_cols=99  Identities=21%  Similarity=0.278  Sum_probs=78.4

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++.||+.++++.|+++|++++++||.+    +......|+.+|+..+++.++...+ ...||.+   ...+..+++.
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~----~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~---~~~~~~~~~~  146 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGS----RERIERVLERLGLDDYFDEIISSDDVGSRKPDP---DAYRRALEKL  146 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSE----HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSH---HHHHHHHHHH
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCC----cccccccccccccccccccccccchhhhhhhHH---HHHHHHHHHc
Confidence            567899999999999999999999999999    7888889999999877666666554 4566644   3334445555


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      |..  .+++|||+..|+.+|. +|.+++-+
T Consensus       147 ~~~p~~~~~vgD~~~d~~~A~~~G~~~i~v  176 (176)
T PF13419_consen  147 GIPPEEILFVGDSPSDVEAAKEAGIKTIWV  176 (176)
T ss_dssp             TSSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred             CCCcceEEEEeCCHHHHHHHHHcCCeEEeC
Confidence            543  5999999999999998 88888753

...

>PHA02597 30

Probab=99.43  E-value=9.1e-13  Score=111.32  Aligned_cols=138  Identities=14%  Similarity=0.060  Sum_probs=86.7

Q ss_pred             CceEEEecCCccccchh----hhhhhccC---------CC---------CCChHH----HHHHHHh---CCCCCchHHHH
Q 025360          101 MDAWILDVDDTCISNVY----YYKGKRYG---------CD---------PYDPAG----FRAWALK---GGCPAIPGVLV  151 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~----~~~~~~~g---------~~---------~~~~~~----~~~~~~~---~~~~~~pg~~e  151 (254)
                      +++||||+||||+|...    ...++++.         ..         ..+...    +..+...   ....++||+.+
T Consensus         2 ~k~viFDlDGTLiD~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~e   81 (197)
T PHA02597          2 KPTILTDVDGVLLSWQSGLPYFAQKYNIPTDHILKMIQDERFRDPGELFGCDQELAKKLIEKYNNSDFIRYLSAYDDALD   81 (197)
T ss_pred             CcEEEEecCCceEchhhccHHHHHhcCCCHHHHHHHHhHhhhcCHHHHhcccHHHHHHHhhhhhHHHHHHhccCCCCHHH
Confidence            47899999999999765    22222111         10         012122    2222211   34679999999


Q ss_pred             HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC----CCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360          152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG----YERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI  227 (254)
Q Consensus       152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~----~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I  227 (254)
                      +++.|++++ .++++|+.+ .   ......++.+|+..    +++.++.....++||     ......+++.|.+.+++|
T Consensus        82 ~L~~L~~~~-~~~i~Tn~~-~---~~~~~~~~~~~l~~~f~~~f~~i~~~~~~~~kp-----~~~~~a~~~~~~~~~v~v  151 (197)
T PHA02597         82 VINKLKEDY-DFVAVTALG-D---SIDALLNRQFNLNALFPGAFSEVLMCGHDESKE-----KLFIKAKEKYGDRVVCFV  151 (197)
T ss_pred             HHHHHHhcC-CEEEEeCCc-c---chhHHHHhhCCHHHhCCCcccEEEEeccCcccH-----HHHHHHHHHhCCCcEEEe
Confidence            999999985 678889877 3   22233344455532    344555554444443     344556666675679999


Q ss_pred             cCCcccccccc-c--CCcEEEeCC
Q 025360          228 GDQWSDLQGEC-T--GNRTFKLPN  248 (254)
Q Consensus       228 GDq~sDi~ga~-~--g~r~fklPN  248 (254)
                      ||+.+|+++|+ +  |..++.+..
T Consensus       152 gDs~~di~aA~~a~~Gi~~i~~~~  175 (197)
T PHA02597        152 DDLAHNLDAAHEALSQLPVIHMLR  175 (197)
T ss_pred             CCCHHHHHHHHHHHcCCcEEEecc
Confidence            99999999997 6  999888743

2 hypothetical protein; Provisional

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=99.42  E-value=2.5e-12  Score=105.40  Aligned_cols=110  Identities=26%  Similarity=0.390  Sum_probs=91.2

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      ...|.+++|+|+|+||+.-.                         ...+-|.+.+.+..++++|.+++++||..    +.
T Consensus        24 ~~~Gikgvi~DlDNTLv~wd-------------------------~~~~tpe~~~W~~e~k~~gi~v~vvSNn~----e~   74 (175)
T COG2179          24 KAHGIKGVILDLDNTLVPWD-------------------------NPDATPELRAWLAELKEAGIKVVVVSNNK----ES   74 (175)
T ss_pred             HHcCCcEEEEeccCceeccc-------------------------CCCCCHHHHHHHHHHHhcCCEEEEEeCCC----HH
Confidence            34679999999999999531                         35578999999999999999999999998    66


Q ss_pred             HHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCc-ccccccc-cCCcEEEe
Q 025360          177 VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQW-SDLQGEC-TGNRTFKL  246 (254)
Q Consensus       177 ~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~-sDi~ga~-~g~r~fkl  246 (254)
                      -...++.++|++ |   +.+.    .|   ++...+|++|.+.+++  .|++||||. +|+.|++ +|++|+.+
T Consensus        75 RV~~~~~~l~v~-f---i~~A----~K---P~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV  137 (175)
T COG2179          75 RVARAAEKLGVP-F---IYRA----KK---PFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILV  137 (175)
T ss_pred             HHHhhhhhcCCc-e---eecc----cC---ccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEE
Confidence            777899999998 2   3222    23   3668899999998886  499999999 7999998 89999987

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=99.41  E-value=1.8e-12  Score=110.60  Aligned_cols=103  Identities=16%  Similarity=0.115  Sum_probs=74.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||.. ..... ....+...|+..+++.++.+.+ ..+||++   ......+.+.|
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~-~~~~~-~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p---~~~~~~~~~~g  166 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNF-PTDHS-AEEALLPGDIMALFDAVVESCLEGLRKPDP---RIYQLMLERLG  166 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCC-Cccch-hhhHhhhhhhHhhCCEEEEeeecCCCCCCH---HHHHHHHHHcC
Confidence            35689999999999999999999999987 32211 2334555677666666665544 4467754   22333556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+..|+.+|+ +|.+++.+.++
T Consensus       167 ~~~~~~l~i~D~~~di~aA~~aG~~~i~v~~~  198 (211)
T TIGR02247       167 VAPEECVFLDDLGSNLKPAAALGITTIKVSDE  198 (211)
T ss_pred             CCHHHeEEEcCCHHHHHHHHHcCCEEEEECCH
Confidence            54  4899999999999997 79999988764

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=99.39  E-value=1.7e-12  Score=103.01  Aligned_cols=76  Identities=14%  Similarity=0.273  Sum_probs=63.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH----
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ----  176 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~----  176 (254)
                      +++|+|||||||+.+..         .+|.           ...+.+++.+.++.|+++|+.|+++|||+ ...+.    
T Consensus         1 ~K~i~~DiDGTL~~~~~---------~~y~-----------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~-~~~~~~n~~   59 (126)
T TIGR01689         1 MKRLVMDLDNTITLTEN---------GDYA-----------NVAPILAVIEKLRHYKALGFEIVISSSRN-MRTYEGNVG   59 (126)
T ss_pred             CCEEEEeCCCCcccCCC---------Cccc-----------ccccCHHHHHHHHHHHHCCCEEEEECCCC-chhhhcccc
Confidence            36899999999986520         0121           25689999999999999999999999999 77666    


Q ss_pred             --------HHHHHHHhCCCCCCCcEEEecC
Q 025360          177 --------VTRDNLHNQGFVGYERLIMRTA  198 (254)
Q Consensus       177 --------~T~~~L~~~G~~~~~~lilr~~  198 (254)
                              .|.+||.++|++ |++++|+.+
T Consensus        60 ~i~~~~~~~t~~wL~k~~ip-Yd~l~~~kp   88 (126)
T TIGR01689        60 KINIHTLPIIILWLNQHNVP-YDEIYVGKP   88 (126)
T ss_pred             ccchhhHHHHHHHHHHcCCC-CceEEeCCC
Confidence                    999999999999 999999984

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=99.39  E-value=2.7e-12  Score=109.75  Aligned_cols=97  Identities=19%  Similarity=0.237  Sum_probs=76.5

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc-C
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE-G  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~-G  220 (254)
                      ..++||+.++++.|+++ ++++++||..    +......|+++|+..+++.++.+.+ ...||.+   ......++.. |
T Consensus        96 ~~~~~g~~~~L~~l~~~-~~~~i~Sn~~----~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~---~~~~~~~~~~~~  167 (224)
T TIGR02254        96 HQLLPGAFELMENLQQK-FRLYIVTNGV----RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDK---EIFNYALERMPK  167 (224)
T ss_pred             CeeCccHHHHHHHHHhc-CcEEEEeCCc----hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCH---HHHHHHHHHhcC
Confidence            57899999999999999 9999999998    6677788999999888877777655 4456654   2233345555 6


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklP  247 (254)
                      .+  .+++|||+. +|+++|+ +|..++.+.
T Consensus       168 ~~~~~~v~igD~~~~di~~A~~~G~~~i~~~  198 (224)
T TIGR02254       168 FSKEEVLMIGDSLTADIKGGQNAGLDTCWMN  198 (224)
T ss_pred             CCchheEEECCCcHHHHHHHHHCCCcEEEEC
Confidence            54  499999998 7999997 788887763

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=99.39  E-value=2.6e-12  Score=107.21  Aligned_cols=122  Identities=19%  Similarity=0.159  Sum_probs=84.2

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc-----c--
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEET-----F--  174 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~-----~--  174 (254)
                      ++++||.||||+...+|..            .+      ....++||+.++|+.|+++|++++++||.+ ..     .  
T Consensus         2 ~~~~~D~Dgtl~~~~~~~~------------~~------~~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~-~~~~~~~~~~   62 (176)
T TIGR00213         2 KAIFLDRDGTINIDHGYVH------------EI------DNFEFIDGVIDALRELKKMGYALVLVTNQS-GIARGYFTEA   62 (176)
T ss_pred             CEEEEeCCCCEeCCCCCCC------------CH------HHeEECCCHHHHHHHHHHCCCEEEEEeCCc-cccCCcCCHH
Confidence            6899999999996432211            11      135689999999999999999999999998 41     1  


Q ss_pred             -----HHHHHHHHHhCCCCCCCcEEEec-----------CCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccc
Q 025360          175 -----GQVTRDNLHNQGFVGYERLIMRT-----------AADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQG  236 (254)
Q Consensus       175 -----r~~T~~~L~~~G~~~~~~lilr~-----------~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~g  236 (254)
                           +......|.+.|+. ++.++...           ....+||.+   ......+++.|.+  .+++|||+++|+++
T Consensus        63 ~~~~~~~~~~~~l~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~KP~p---~~~~~a~~~~~~~~~~~v~VGDs~~Di~a  138 (176)
T TIGR00213        63 QFEQLTEWMDWSLAERDVD-LDGIYYCPHHPEGVEEFRQVCDCRKPKP---GMLLQARKELHIDMAQSYMVGDKLEDMQA  138 (176)
T ss_pred             HHHHHHHHHHHHHHHcCCC-ccEEEECCCCCcccccccCCCCCCCCCH---HHHHHHHHHcCcChhhEEEEcCCHHHHHH
Confidence                 13334567777887 55555432           112356643   3444556666654  49999999999999


Q ss_pred             cc-cCCcE-EEe
Q 025360          237 EC-TGNRT-FKL  246 (254)
Q Consensus       237 a~-~g~r~-fkl  246 (254)
                      |+ +|.++ +.+
T Consensus       139 A~~aG~~~~i~v  150 (176)
T TIGR00213       139 GVAAKVKTNVLV  150 (176)
T ss_pred             HHHCCCcEEEEE
Confidence            97 78887 444

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=99.39  E-value=2.1e-12  Score=106.79  Aligned_cols=128  Identities=20%  Similarity=0.207  Sum_probs=88.6

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc--c-------
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE--E-------  172 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~--e-------  172 (254)
                      ++++||.||||..+.+.         .|... .     ....+++||+.++|++|+++|++++++||.++  .       
T Consensus         2 ~~~~~d~dg~l~~~~~~---------~~~~~-~-----~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~   66 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPS---------DFQVD-A-----LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQAD   66 (161)
T ss_pred             CEEEEeCCCCccccCCC---------ccccC-C-----HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHH
Confidence            68999999999986420         11000 0     01357899999999999999999999999741  0       


Q ss_pred             --ccHHHHHHHHHhCCCCCCCcEEEe----cCC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCc
Q 025360          173 --TFGQVTRDNLHNQGFVGYERLIMR----TAA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNR  242 (254)
Q Consensus       173 --~~r~~T~~~L~~~G~~~~~~lilr----~~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r  242 (254)
                        ..+..+.+.|.++|+. ++..+.+    .++ ..+||.+   ......++..|..  .+++|||+.+|+.+|+ +|..
T Consensus        67 ~~~~~~~~~~~l~~~gl~-fd~ii~~~~~~~~~~~~~KP~~---~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~aGi~  142 (161)
T TIGR01261        67 FDGPHNLMLQIFRSQGII-FDDVLICPHFPDDNCDCRKPKI---KLLEPYLKKNLIDKARSYVIGDRETDMQLAENLGIR  142 (161)
T ss_pred             HHHHHHHHHHHHHHCCCc-eeEEEECCCCCCCCCCCCCCCH---HHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHHCCCe
Confidence              1244566778999997 6566665    222 3456643   2233344555544  4999999999999997 8888


Q ss_pred             EEEeCC
Q 025360          243 TFKLPN  248 (254)
Q Consensus       243 ~fklPN  248 (254)
                      ++.+..
T Consensus       143 ~i~~~~  148 (161)
T TIGR01261       143 GIQYDE  148 (161)
T ss_pred             EEEECh
Confidence            887754

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=99.38  E-value=1.9e-12  Score=107.56  Aligned_cols=124  Identities=15%  Similarity=0.067  Sum_probs=82.5

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc------
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------  174 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------  174 (254)
                      .+.++||+||||+.+....   .+   ..+++.|        ..++||+.++|+.|+++|++++++||++ ...      
T Consensus        13 ~k~~~~D~Dgtl~~~~~~~---~~---~~~~~~~--------~~~~pgv~e~L~~Lk~~G~~l~I~TN~~-~~~~~~~~~   77 (166)
T TIGR01664        13 SKVAAFDLDGTLITTRSGK---VF---PTSASDW--------RFLYPEIPAKLQELDDEGYKIVIFTNQS-GIGRGKLSA   77 (166)
T ss_pred             CcEEEEeCCCceEecCCCC---cc---cCChHHe--------EEecCCHHHHHHHHHHCCCEEEEEeCCc-ccccCcccH
Confidence            5789999999999753100   00   1122222        2368999999999999999999999988 421      


Q ss_pred             ---HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--C--cEEEEEcCCc--------ccccccc-
Q 025360          175 ---GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--Y--RIWGNIGDQW--------SDLQGEC-  238 (254)
Q Consensus       175 ---r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y--~i~~~IGDq~--------sDi~ga~-  238 (254)
                         ...+...|+.+|++ ++.++.......+||.+   ..+...++..|  .  ..+++|||+.        +|+++|+ 
T Consensus        78 ~~~~~~i~~~l~~~gl~-~~~ii~~~~~~~~KP~p---~~~~~~~~~~~~~~~~~~~v~VGD~~~~~~~~~~~Di~aA~~  153 (166)
T TIGR01664        78 ESFKNKIEAFLEKLKVP-IQVLAATHAGLYRKPMT---GMWEYLQSQYNSPIKMTRSFYVGDAAGRKLDFSDADIKFAKN  153 (166)
T ss_pred             HHHHHHHHHHHHHcCCC-EEEEEecCCCCCCCCcc---HHHHHHHHHcCCCCCchhcEEEECCCCCCCCCchhHHHHHHH
Confidence               12467789999997 33333333323456644   23334455555  3  4699999996        6999997 


Q ss_pred             cCCcE
Q 025360          239 TGNRT  243 (254)
Q Consensus       239 ~g~r~  243 (254)
                      +|.++
T Consensus       154 aGi~~  158 (166)
T TIGR01664       154 LGLEF  158 (166)
T ss_pred             CCCCc
Confidence            66554

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>PLN02954 phosphoserine phosphatase

Probab=99.35  E-value=1.6e-11  Score=105.60  Aligned_cols=140  Identities=21%  Similarity=0.215  Sum_probs=88.7

Q ss_pred             CCceEEEecCCccccchhhhhh-hccC--------------C-CCC-------------ChHHHHHHHHhCCCCCchHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKG-KRYG--------------C-DPY-------------DPAGFRAWALKGGCPAIPGVL  150 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~-~~~g--------------~-~~~-------------~~~~~~~~~~~~~~~~~pg~~  150 (254)
                      .+++||||+||||+++.....- ..+|              + .++             ..+.+.+++......++||+.
T Consensus        11 ~~k~viFDfDGTL~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pg~~   90 (224)
T PLN02954         11 SADAVCFDVDSTVCVDEGIDELAEFCGAGEAVAEWTAKAMGGSVPFEEALAARLSLFKPSLSQVEEFLEKRPPRLSPGIP   90 (224)
T ss_pred             cCCEEEEeCCCcccchHHHHHHHHHcCChHHHHHHHHHHHCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHccCCCCccHH
Confidence            3789999999999987532111 1122              1 111             112234444443456889999


Q ss_pred             HHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC--CCc--EEEecC------C-CCCCCCcccH-HHHHHHHHH
Q 025360          151 VLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG--YER--LIMRTA------A-DKGKNAVTYK-SEIRKQLLE  218 (254)
Q Consensus       151 ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~--~~~--lilr~~------~-~~~kp~~~yK-~~~r~~l~~  218 (254)
                      ++++.|+++|++++++||..    +..+...|+.+|++.  ++.  +....+      . .........| ..+++.+..
T Consensus        91 e~l~~l~~~g~~~~IvS~~~----~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~~i~~~~~~  166 (224)
T PLN02954         91 ELVKKLRARGTDVYLVSGGF----RQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSRSGGKAEAVQHIKKK  166 (224)
T ss_pred             HHHHHHHHCCCEEEEECCCc----HHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccCCccHHHHHHHHHHH
Confidence            99999999999999999999    788888999999972  221  111111      0 0000001123 334444455


Q ss_pred             cCCcEEEEEcCCcccccccccCCcE
Q 025360          219 EGYRIWGNIGDQWSDLQGECTGNRT  243 (254)
Q Consensus       219 ~Gy~i~~~IGDq~sDi~ga~~g~r~  243 (254)
                      .|...+++|||+.+|+.++.+|...
T Consensus       167 ~~~~~~i~iGDs~~Di~aa~~~~~~  191 (224)
T PLN02954        167 HGYKTMVMIGDGATDLEARKPGGAD  191 (224)
T ss_pred             cCCCceEEEeCCHHHHHhhhcCCCC
Confidence            6777899999999999998864333

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=99.35  E-value=6.8e-12  Score=105.01  Aligned_cols=126  Identities=18%  Similarity=0.159  Sum_probs=87.0

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc------
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------  174 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------  174 (254)
                      .++++||.||||..+...+.+           .+.      ...++||+.+++++|+++|++++++||.+ ...      
T Consensus         3 ~~~~~~d~~~t~~~~~~~~~~-----------~~~------~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~-~~~~~~~~~   64 (181)
T PRK08942          3 MKAIFLDRDGVINVDSDGYVK-----------SPD------EWIPIPGSIEAIARLKQAGYRVVVATNQS-GIARGLFTE   64 (181)
T ss_pred             ccEEEEECCCCcccCCccccC-----------CHH------HeEECCCHHHHHHHHHHCCCEEEEEeCCc-cccCCcCCH
Confidence            578999999998766422211           111      24689999999999999999999999986 310      


Q ss_pred             ------HHHHHHHHHhCCCCCCCcEEEecC----C-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cC
Q 025360          175 ------GQVTRDNLHNQGFVGYERLIMRTA----A-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TG  240 (254)
Q Consensus       175 ------r~~T~~~L~~~G~~~~~~lilr~~----~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g  240 (254)
                            ++.....|++.|+. ++.++....    . ..+||++   ......++..|..  .+++|||+.+|+.+|+ +|
T Consensus        65 ~~~~~~~~~~~~~l~~~g~~-f~~i~~~~~~~~~~~~~~KP~p---~~~~~~~~~l~~~~~~~~~VgDs~~Di~~A~~aG  140 (181)
T PRK08942         65 AQLNALHEKMDWSLADRGGR-LDGIYYCPHHPEDGCDCRKPKP---GMLLSIAERLNIDLAGSPMVGDSLRDLQAAAAAG  140 (181)
T ss_pred             HHHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcCCCCCH---HHHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCC
Confidence                  12334567778884 555554432    1 2456644   3344456666654  5999999999999998 78


Q ss_pred             CcEEEeCC
Q 025360          241 NRTFKLPN  248 (254)
Q Consensus       241 ~r~fklPN  248 (254)
                      .+++.++.
T Consensus       141 ~~~i~v~~  148 (181)
T PRK08942        141 VTPVLVRT  148 (181)
T ss_pred             CeEEEEcC
Confidence            88877753

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=99.35  E-value=1.3e-11  Score=103.85  Aligned_cols=105  Identities=13%  Similarity=-0.095  Sum_probs=71.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc-EEEecCCCCCCCCc------ccHH-HHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER-LIMRTAADKGKNAV------TYKS-EIR  213 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~-lilr~~~~~~kp~~------~yK~-~~r  213 (254)
                      ..+++||+.++++.|+++|++++++||..    +..+...++.+|+..++. .+...+....+|..      .-|. .++
T Consensus        78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~----~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~  153 (201)
T TIGR01491        78 EISLRDYAEELVRWLKEKGLKTAIVSGGI----MCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVE  153 (201)
T ss_pred             hCCCCccHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccHHHHHH
Confidence            46789999999999999999999999999    778888899999876432 22222221112221      1122 233


Q ss_pred             HHHHHcCC--cEEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          214 KQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       214 ~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                      ..++..|.  ..+++|||+.+|+.++. +|..+..-|+|.
T Consensus       154 ~~~~~~~~~~~~~i~iGDs~~D~~~a~~ag~~~a~~~~~~  193 (201)
T TIGR01491       154 RLKRELNPSLTETVAVGDSKNDLPMFEVADISISLGDEGH  193 (201)
T ss_pred             HHHHHhCCCHHHEEEEcCCHhHHHHHHhcCCeEEECCCcc
Confidence            33344454  35999999999999888 565444447764

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>smart00775 LNS2 LNS2 domain

Probab=99.34  E-value=1.1e-11  Score=102.11  Aligned_cols=119  Identities=18%  Similarity=0.271  Sum_probs=84.4

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL  182 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L  182 (254)
                      .|++||||||+++..      +|. ...        ..++....|++.++++.++++|++++++|||+ ..+...|..+|
T Consensus         1 iVisDIDGTL~~sd~------~~~-~~~--------~~~~~~~~~~~~~a~~~l~~~G~~ivy~TGRp-~~~~~~t~~~l   64 (157)
T smart00775        1 IVISDIDGTITKSDV------LGH-VVP--------IIGKDWTHPGVAKLYRDIQNNGYKILYLTARP-IGQADRTRSYL   64 (157)
T ss_pred             CEEEecCCCCccccc------ccc-ccc--------ccccCcCCHHHHHHHHHHHHcCCeEEEEcCCc-HHHHHHHHHHH
Confidence            389999999998741      110 000        01234567999999999999999999999999 88888899999


Q ss_pred             Hh-----CCCCCCCcEEEecCCCC--------CCCCcccHHHHHHHHHH----cCCcEEEEEcCCcccccccc
Q 025360          183 HN-----QGFVGYERLIMRTAADK--------GKNAVTYKSEIRKQLLE----EGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       183 ~~-----~G~~~~~~lilr~~~~~--------~kp~~~yK~~~r~~l~~----~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+     ++++. ..+++++...-        .+....+|....+.|.+    .+...++.+||..+|+.+-.
T Consensus        65 ~~~~~~~~~lp~-g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~~~~~~~f~~~~gn~~~D~~~y~  136 (157)
T smart00775       65 SQIKQDGHNLPH-GPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLFPPQGNPFYAGFGNRITDVISYS  136 (157)
T ss_pred             HHhhhccccCCC-ceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeCCCchhHHHHH
Confidence            98     45763 45677665421        11112467666666665    36677888999999998765

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=99.33  E-value=9.2e-12  Score=108.75  Aligned_cols=93  Identities=12%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.++|+.|+++ ++++++||.+ ..        ++..|+..|++.++...+ ...||.+   ......+...|.
T Consensus       112 ~~~~~gv~~~L~~L~~~-~~l~i~Tn~~-~~--------~~~~gl~~~fd~i~~~~~~~~~KP~p---~~~~~a~~~~~~  178 (238)
T PRK10748        112 IDVPQATHDTLKQLAKK-WPLVAITNGN-AQ--------PELFGLGDYFEFVLRAGPHGRSKPFS---DMYHLAAEKLNV  178 (238)
T ss_pred             CCCCccHHHHHHHHHcC-CCEEEEECCC-ch--------HHHCCcHHhhceeEecccCCcCCCcH---HHHHHHHHHcCC
Confidence            67889999999999975 9999999988 32        467899888877776655 4556654   233334555665


Q ss_pred             c--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      .  .+++|||++ .|+.||+ +|.+++.+..
T Consensus       179 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~  209 (238)
T PRK10748        179 PIGEILHVGDDLTTDVAGAIRCGMQACWINP  209 (238)
T ss_pred             ChhHEEEEcCCcHHHHHHHHHCCCeEEEEcC
Confidence            4  499999995 9999997 8999988854

>PRK06769 hypothetical protein; Validated

Probab=99.32  E-value=7.6e-12  Score=104.43  Aligned_cols=122  Identities=17%  Similarity=0.210  Sum_probs=83.3

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-----
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF-----  174 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~-----  174 (254)
                      +.++++||.||||--.. ++                  .......++||+.++|++|+++|++++++||.+ +..     
T Consensus         3 ~~~~~~~d~d~~~~~~~-~~------------------~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~Tn~~-~~~~~~~~   62 (173)
T PRK06769          3 NIQAIFIDRDGTIGGDT-TI------------------HYPGSFTLFPFTKASLQKLKANHIKIFSFTNQP-GIADGIAT   62 (173)
T ss_pred             CCcEEEEeCCCcccCCC-CC------------------CCHHHeEECCCHHHHHHHHHHCCCEEEEEECCc-hhcCCcCC
Confidence            57899999999994210 00                  001235689999999999999999999999987 421     


Q ss_pred             HHHHHHHHHhCCCCCCCcEEEe----cCC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEe
Q 025360          175 GQVTRDNLHNQGFVGYERLIMR----TAA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       175 r~~T~~~L~~~G~~~~~~lilr----~~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      ...+...|+..|+..+   +..    +++ ..+||.+   ......+++.|..  .+++|||+.+|+++|+ +|..++.+
T Consensus        63 ~~~~~~~l~~~g~~~~---~~~~~~~~~~~~~~KP~p---~~~~~~~~~l~~~p~~~i~IGD~~~Di~aA~~aGi~~i~v  136 (173)
T PRK06769         63 IADFVQELKGFGFDDI---YLCPHKHGDGCECRKPST---GMLLQAAEKHGLDLTQCAVIGDRWTDIVAAAKVNATTILV  136 (173)
T ss_pred             HHHHHHHHHhCCcCEE---EECcCCCCCCCCCCCCCH---HHHHHHHHHcCCCHHHeEEEcCCHHHHHHHHHCCCeEEEE
Confidence            1234455778888643   332    222 3456654   3333455556654  5999999999999998 78888876


Q ss_pred             C
Q 025360          247 P  247 (254)
Q Consensus       247 P  247 (254)
                      .
T Consensus       137 ~  137 (173)
T PRK06769        137 R  137 (173)
T ss_pred             e
Confidence            3

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.32  E-value=2.2e-11  Score=126.48  Aligned_cols=98  Identities=22%  Similarity=0.235  Sum_probs=79.3

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC-CCCcEEEecCC-CCCCCCc-ccHHHHHHHHHHcC
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV-GYERLIMRTAA-DKGKNAV-TYKSEIRKQLLEEG  220 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~-~~~~lilr~~~-~~~kp~~-~yK~~~r~~l~~~G  220 (254)
                      .++||+.++++.|+++|++++++||..    +..+...|+++|+. .+++.++..++ ...||++ .|.    ..++..|
T Consensus       161 ~~~pG~~elL~~Lk~~G~~l~IvSn~~----~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~----~a~~~lg  232 (1057)
T PLN02919        161 IGFPGALELITQCKNKGLKVAVASSAD----RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFL----AAAKILG  232 (1057)
T ss_pred             ccCccHHHHHHHHHhCCCeEEEEeCCc----HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHH----HHHHHcC
Confidence            479999999999999999999999999    77778889999996 56777777765 4567765 333    3455555


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .|++|||+.+|+++|+ +|++++.+...
T Consensus       233 v~p~e~v~IgDs~~Di~AA~~aGm~~I~v~~~  264 (1057)
T PLN02919        233 VPTSECVVIEDALAGVQAARAAGMRCIAVTTT  264 (1057)
T ss_pred             cCcccEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence            43  5999999999999998 79999988653

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.31  E-value=5.4e-11  Score=98.87  Aligned_cols=99  Identities=19%  Similarity=0.176  Sum_probs=72.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-C---------C-------CCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-D---------K-------GKN  204 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~---------~-------~kp  204 (254)
                      ..++.||+.++++.|+++|++++++||..    +......|+..|+..+++.++..+. .         .       ..+
T Consensus        70 ~~~l~~g~~~ll~~l~~~g~~~~i~S~~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~~~~~~  145 (188)
T TIGR01489        70 SAPIDPGFKEFIAFIKEHGIDFIVISDGN----DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHGCCSCP  145 (188)
T ss_pred             hCCCCccHHHHHHHHHHcCCcEEEEeCCc----HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCccCcCC
Confidence            36899999999999999999999999999    6777788899999877666664332 0         0       011


Q ss_pred             CcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEE
Q 025360          205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTF  244 (254)
Q Consensus       205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~f  244 (254)
                      ....|..+.+.+....+..+++|||+.+|+.+|.....+|
T Consensus       146 ~g~~K~~~~~~~~~~~~~~~i~iGD~~~D~~aa~~~d~~~  185 (188)
T TIGR01489       146 CGCCKGKVIHKLSEPKYQHIIYIGDGVTDVCPAKLSDVVF  185 (188)
T ss_pred             CCCCHHHHHHHHHhhcCceEEEECCCcchhchHhcCCccc
Confidence            1234655555554432577999999999999998554444

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=99.30  E-value=4.3e-11  Score=102.50  Aligned_cols=103  Identities=20%  Similarity=0.163  Sum_probs=68.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEE-------ecCCC-CCCCCcccH-HHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIM-------RTAAD-KGKNAVTYK-SEI  212 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lil-------r~~~~-~~kp~~~yK-~~~  212 (254)
                      ..++.||+.++++.|+++|++++++||..    +......++..|+..++...+       .+... .... ...| ...
T Consensus        83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~----~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~k~~~~  157 (219)
T TIGR00338        83 NLPLTEGAEELVKTLKEKGYKVAVISGGF----DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVD-ASYKGKTL  157 (219)
T ss_pred             cCCcCCCHHHHHHHHHHCCCEEEEECCCc----HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccC-CcccHHHH
Confidence            45789999999999999999999999998    677778888899986543211       11000 0000 0112 233


Q ss_pred             HHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          213 RKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       213 r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      +..++..|..  .+++|||+.+|+.++. +|..+..-|++
T Consensus       158 ~~~~~~~~~~~~~~i~iGDs~~Di~aa~~ag~~i~~~~~~  197 (219)
T TIGR00338       158 LILLRKEGISPENTVAVGDGANDLSMIKAAGLGIAFNAKP  197 (219)
T ss_pred             HHHHHHcCCCHHHEEEEECCHHHHHHHHhCCCeEEeCCCH
Confidence            3344555543  5899999999999987 56554443443

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=99.29  E-value=1.5e-11  Score=104.25  Aligned_cols=91  Identities=15%  Similarity=0.132  Sum_probs=64.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEec--CC-CCC--CCCcccHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRT--AA-DKG--KNAVTYKSEIRKQL  216 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~--~~-~~~--kp~~~yK~~~r~~l  216 (254)
                      ..+++||+.++++.|+++ ++++++||..    +..+...|+++|++.++...+..  ++ ..+  ++.+.-|....+.+
T Consensus        66 ~~~~~pg~~e~L~~L~~~-~~~~IvS~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~  140 (205)
T PRK13582         66 TLDPLPGAVEFLDWLRER-FQVVILSDTF----YEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQAVKAL  140 (205)
T ss_pred             hCCCCCCHHHHHHHHHhc-CCEEEEeCCc----HHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHHHHHHH
Confidence            467899999999999999 9999999999    78888899999998654322211  11 000  11122344444455


Q ss_pred             HHcCCcEEEEEcCCcccccccc
Q 025360          217 LEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       217 ~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ...+ ..+++|||+.+|+..+.
T Consensus       141 ~~~~-~~~v~iGDs~~D~~~~~  161 (205)
T PRK13582        141 KSLG-YRVIAAGDSYNDTTMLG  161 (205)
T ss_pred             HHhC-CeEEEEeCCHHHHHHHH
Confidence            4433 67999999999997765

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=99.29  E-value=4.9e-12  Score=105.89  Aligned_cols=138  Identities=12%  Similarity=0.033  Sum_probs=91.5

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHH-HH---HHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCC-CccccH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAG-FR---AWALKGGCPAIPGVLVLFNKLIESGLKVILVTGR-DEETFG  175 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~-~~---~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR-~~e~~r  175 (254)
                      ++.||||+|+|+-+..-+..   ++ .++.+.. -+   .-.......++||+.++++.|+++|++++++||+ .    +
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~----~   73 (174)
T TIGR01685         2 PRVIVFDLDGTLWDHYMISL---LG-GPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV----P   73 (174)
T ss_pred             CcEEEEeCCCCCcCcccccc---cC-CCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC----h
Confidence            46799999999987542211   11 0111000 00   0001134679999999999999999999999998 6    6


Q ss_pred             HHHHHHHHhCCCC---------CCCcEEEecCCCCCCCCcccHHHHHHHHHHc---CC--cEEEEEcCCcccccccc-cC
Q 025360          176 QVTRDNLHNQGFV---------GYERLIMRTAADKGKNAVTYKSEIRKQLLEE---GY--RIWGNIGDQWSDLQGEC-TG  240 (254)
Q Consensus       176 ~~T~~~L~~~G~~---------~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~---Gy--~i~~~IGDq~sDi~ga~-~g  240 (254)
                      ..+...|..+|+.         .+++.++..+.. .++ +.. ..+.+.+.+.   |.  ..+++|||+..|+.+|+ +|
T Consensus        74 ~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~-~~~-kp~-~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aG  150 (174)
T TIGR01685        74 EWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKP-NKA-KQL-EMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYG  150 (174)
T ss_pred             HHHHHHHHhCCcCCCCCcccHHHhceeeeeccCC-chH-HHH-HHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhC
Confidence            6777888999987         788877776542 111 111 1223333322   33  45999999999999998 79


Q ss_pred             CcEEEeCCC
Q 025360          241 NRTFKLPNP  249 (254)
Q Consensus       241 ~r~fklPNp  249 (254)
                      .+++-++..
T Consensus       151 i~~i~v~~g  159 (174)
T TIGR01685       151 VTSCYCPSG  159 (174)
T ss_pred             CEEEEcCCC
Confidence            999988653

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=99.27  E-value=2.1e-11  Score=100.01  Aligned_cols=127  Identities=19%  Similarity=0.287  Sum_probs=94.2

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL  182 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L  182 (254)
                      .||+|||||+..+.-      +|-       ...  ..+++..-||+.++++.++++||+++++|+|+ ..+...|..||
T Consensus         1 VVvsDIDGTiT~SD~------~G~-------i~~--~~G~d~~h~g~~~l~~~i~~~GY~ilYlTaRp-~~qa~~Tr~~L   64 (157)
T PF08235_consen    1 VVVSDIDGTITKSDV------LGH-------ILP--ILGKDWTHPGAAELYRKIADNGYKILYLTARP-IGQANRTRSWL   64 (157)
T ss_pred             CEEEeccCCcCccch------hhh-------hhh--ccCchhhhhcHHHHHHHHHHCCeEEEEECcCc-HHHHHHHHHHH
Confidence            489999999997731      110       000  02345678999999999999999999999999 99999999999


Q ss_pred             HhC-----CCCCCCcEEEecCC--------CCCCCCcccHHHHHHHHHHc----CCcEEEEEcCCcccccccc-c---CC
Q 025360          183 HNQ-----GFVGYERLIMRTAA--------DKGKNAVTYKSEIRKQLLEE----GYRIWGNIGDQWSDLQGEC-T---GN  241 (254)
Q Consensus       183 ~~~-----G~~~~~~lilr~~~--------~~~kp~~~yK~~~r~~l~~~----Gy~i~~~IGDq~sDi~ga~-~---g~  241 (254)
                      .++     ++|. .-+++.++.        .-.+....||....+.+...    +-.+...+|.+.+|+.+.. +   -.
T Consensus        65 ~~~~q~~~~lP~-Gpv~~sP~~l~~al~rEvi~~~p~~fK~~~L~~l~~~f~~~~~pf~agfGN~~tDv~aY~~vGip~~  143 (157)
T PF08235_consen   65 AQHQQQGHNLPD-GPVLLSPDSLFSALHREVISKDPEEFKIACLRDLRALFPPDGNPFYAGFGNRSTDVIAYKAVGIPKS  143 (157)
T ss_pred             HHHHhCCccCCC-CCEEECCcchhhhhhccccccChHHHHHHHHHHHHHhcCCCCCeEEEecCCcHHHHHHHHHcCCChh
Confidence            999     8884 556666432        11122358898888888775    6678999999999998876 2   24


Q ss_pred             cEEEe
Q 025360          242 RTFKL  246 (254)
Q Consensus       242 r~fkl  246 (254)
                      |.|.+
T Consensus       144 rIF~I  148 (157)
T PF08235_consen  144 RIFII  148 (157)
T ss_pred             hEEEE
Confidence            55554

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.20  E-value=6.5e-11  Score=94.13  Aligned_cols=111  Identities=15%  Similarity=0.109  Sum_probs=74.6

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCC-CccccHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGR-DEETFGQVTRD  180 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR-~~e~~r~~T~~  180 (254)
                      +.++||+||||+.......    +   -+.      +. ...+++||+.++++.|+++|++++++||+ .    +..+..
T Consensus         1 kli~~DlD~Tl~~~~~~~~----~---~~~------~~-~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~----~~~~~~   62 (128)
T TIGR01681         1 KVIVFDLDNTLWTGENIVV----G---EDP------II-DLEVTIKEIRDKLQTLKKNGFLLALASYNDD----PHVAYE   62 (128)
T ss_pred             CEEEEeCCCCCCCCCcccc----c---CCc------ch-hhHHHHHHHHHHHHHHHHCCeEEEEEeCCCC----HHHHHH
Confidence            4789999999997631000    0   000      00 00168999999999999999999999999 6    566667


Q ss_pred             HHHhCC-------CCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--Cc--EEEEEcCCcccccc
Q 025360          181 NLHNQG-------FVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--YR--IWGNIGDQWSDLQG  236 (254)
Q Consensus       181 ~L~~~G-------~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y~--i~~~IGDq~sDi~g  236 (254)
                      .|+..|       +..+++.+..+.. .++|     ...+..++..|  ..  .+++|||+..++.+
T Consensus        63 ~l~~~~~~~~i~~l~~~f~~~~~~~~-~pkp-----~~~~~a~~~lg~~~~p~~~l~igDs~~n~~~  123 (128)
T TIGR01681        63 LLKIFEDFGIIFPLAEYFDPLTIGYW-LPKS-----PRLVEIALKLNGVLKPKSILFVDDRPDNNEE  123 (128)
T ss_pred             HHHhccccccchhhHhhhhhhhhcCC-CcHH-----HHHHHHHHHhcCCCCcceEEEECCCHhHHHH
Confidence            777777       5666665555432 2232     33445566666  54  59999999988765

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.20  E-value=2.1e-10  Score=98.36  Aligned_cols=100  Identities=18%  Similarity=0.178  Sum_probs=79.3

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .++.|++.+.|+.|+++ ++++++||-.    +......|++.|+..+++.++.+.+ ...||++..-   ...++..|.
T Consensus        98 ~~~~~~~~~~L~~l~~~-~~l~ilTNg~----~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f---~~~~~~~g~  169 (229)
T COG1011          98 LPDYPEALEALKELGKK-YKLGILTNGA----RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIF---EYALEKLGV  169 (229)
T ss_pred             CccChhHHHHHHHHHhh-ccEEEEeCCC----hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHH---HHHHHHcCC
Confidence            68999999999999999 9999999987    6788899999999888777766655 5567765222   235666775


Q ss_pred             c--EEEEEcCCc-ccccccc-cCCcEEEeCCCC
Q 025360          222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp~  250 (254)
                      .  .+++|||+. +|+.||. +|++++-+..+.
T Consensus       170 ~p~~~l~VgD~~~~di~gA~~~G~~~vwi~~~~  202 (229)
T COG1011         170 PPEEALFVGDSLENDILGARALGMKTVWINRGG  202 (229)
T ss_pred             CcceEEEECCChhhhhHHHHhcCcEEEEECCCC
Confidence            4  699999988 5768887 899988776544

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=99.20  E-value=1.9e-11  Score=100.16  Aligned_cols=117  Identities=21%  Similarity=0.259  Sum_probs=77.1

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+|||||||+++..++...  +.  + ..         .--..++.  .+++|+++|++++++||++    +..+..
T Consensus         1 ~~~~~~D~Dgtl~~~~~~~~~~--~~--~-~~---------~~~~~~~~--~i~~Lk~~G~~i~IvTn~~----~~~~~~   60 (154)
T TIGR01670         1 IRLLILDVDGVLTDGKIYYTNN--GE--E-IK---------AFNVRDGY--GIRCALKSGIEVAIITGRK----AKLVED   60 (154)
T ss_pred             CeEEEEeCceeEEcCeEEECCC--Cc--E-EE---------EEechhHH--HHHHHHHCCCEEEEEECCC----CHHHHH
Confidence            3689999999999976543321  00  0 00         00011222  7999999999999999999    677788


Q ss_pred             HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .|+++|+..++.    .  ..+|     .....+.+...|.  +.+++|||+.+|+.++. +|. .|.+.|.
T Consensus        61 ~l~~~gi~~~~~----~--~~~k-----~~~~~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~-~~~v~~~  120 (154)
T TIGR01670        61 RCKTLGITHLYQ----G--QSNK-----LIAFSDILEKLALAPENVAYIGDDLIDWPVMEKVGL-SVAVADA  120 (154)
T ss_pred             HHHHcCCCEEEe----c--ccch-----HHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCC-eEecCCc
Confidence            999999985432    1  1222     2334444555554  35999999999999987 454 4666543

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=99.18  E-value=1.6e-10  Score=99.51  Aligned_cols=138  Identities=14%  Similarity=0.087  Sum_probs=84.1

Q ss_pred             CceEEEecCCccccchhhhh-hhccCC-------------C-C-----------CCh---HHHHHHHHhCCCCCchHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYK-GKRYGC-------------D-P-----------YDP---AGFRAWALKGGCPAIPGVLV  151 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~-~~~~g~-------------~-~-----------~~~---~~~~~~~~~~~~~~~pg~~e  151 (254)
                      +.+|+||+||||++...... ...++.             + .           +..   +...+.+. ...++.||+.+
T Consensus         3 ~~~vifDfDgTi~~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~l~pG~~e   81 (219)
T PRK09552          3 SIQIFCDFDGTITNNDNIIAIMKKFAPPEWEELKDDILSQELSIQEGVGQMFQLLPSNLKEEIIQFLL-ETAEIREGFHE   81 (219)
T ss_pred             CcEEEEcCCCCCCcchhhHHHHHHhCHHHHHHHHHHHHhCCcCHHHHHHHHHHhCCCCchHHHHHHHH-hCCCcCcCHHH
Confidence            45899999999998765442 112221             0 0           011   11222222 34789999999


Q ss_pred             HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC--CC--cEEEecCC-CCCCCCcc----------cHHHHHHHH
Q 025360          152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG--YE--RLIMRTAA-DKGKNAVT----------YKSEIRKQL  216 (254)
Q Consensus       152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~--~~--~lilr~~~-~~~kp~~~----------yK~~~r~~l  216 (254)
                      +++.|+++|++++++||..    +..+...|+++ +..  +.  ...+.++. ...||.+.          -|....+.+
T Consensus        82 ~l~~l~~~g~~~~IvS~~~----~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~~l~~~  156 (219)
T PRK09552         82 FVQFVKENNIPFYVVSGGM----DFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPSLIRKL  156 (219)
T ss_pred             HHHHHHHcCCeEEEECCCc----HHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHHHHHHh
Confidence            9999999999999999999    77788888887 653  11  22233322 12233322          133333333


Q ss_pred             HHcCCcEEEEEcCCcccccccccCCcEEE
Q 025360          217 LEEGYRIWGNIGDQWSDLQGECTGNRTFK  245 (254)
Q Consensus       217 ~~~Gy~i~~~IGDq~sDi~ga~~g~r~fk  245 (254)
                      .. ....+++|||+.+|+.+++.+..+|.
T Consensus       157 ~~-~~~~~i~iGDs~~Di~aa~~Ag~~~a  184 (219)
T PRK09552        157 SD-TNDFHIVIGDSITDLEAAKQADKVFA  184 (219)
T ss_pred             cc-CCCCEEEEeCCHHHHHHHHHCCccee
Confidence            22 22358999999999999984333443

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=99.17  E-value=3e-10  Score=104.88  Aligned_cols=127  Identities=20%  Similarity=0.229  Sum_probs=88.2

Q ss_pred             CceEEEecCCccccchh--hhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc-------
Q 025360          101 MDAWILDVDDTCISNVY--YYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE-------  171 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~-------  171 (254)
                      ++.++||-||||.....  |+..               +  .....++||+.++|++|+++|++++++||.++       
T Consensus         2 ~k~l~lDrDgtl~~~~~~~y~~~---------------~--~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~   64 (354)
T PRK05446          2 QKILFIDRDGTLIEEPPTDFQVD---------------S--LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFP   64 (354)
T ss_pred             CcEEEEeCCCCccCCCCcccccc---------------C--cccceECcCHHHHHHHHHhCCCeEEEEECCccccCcccc
Confidence            67899999999997531  1111               0  12478999999999999999999999999621       


Q ss_pred             c----ccHHHHHHHHHhCCCCCCCcEEEecC----C-CCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc-c
Q 025360          172 E----TFGQVTRDNLHNQGFVGYERLIMRTA----A-DKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC-T  239 (254)
Q Consensus       172 e----~~r~~T~~~L~~~G~~~~~~lilr~~----~-~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~  239 (254)
                      +    ..+..+...|...|+. ++.++++..    + ..+||.+   ..+...+...+.  ..+++|||+.+|+.+|. +
T Consensus        65 ~~~l~~~~~~i~~iL~~~gl~-fd~i~i~~~~~sd~~~~rKP~p---~~l~~a~~~l~v~~~~svmIGDs~sDi~aAk~a  140 (354)
T PRK05446         65 QEDFDPPHNLMMQIFESQGIK-FDEVLICPHFPEDNCSCRKPKT---GLVEEYLAEGAIDLANSYVIGDRETDVQLAENM  140 (354)
T ss_pred             HHHHhhHHHHHHHHHHHcCCc-eeeEEEeCCcCcccCCCCCCCH---HHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHC
Confidence            1    1144566788899996 555666531    2 2445533   233334444444  45999999999999997 8


Q ss_pred             CCcEEEeCCC
Q 025360          240 GNRTFKLPNP  249 (254)
Q Consensus       240 g~r~fklPNp  249 (254)
                      |.+++.+ ||
T Consensus       141 Gi~~I~v-~~  149 (354)
T PRK05446        141 GIKGIRY-AR  149 (354)
T ss_pred             CCeEEEE-EC
Confidence            8888866 44

>KOG2914 consensus Predicted haloacid-halidohydrolase and related hydrolases [General function prediction only]

Probab=99.17  E-value=1.5e-10  Score=100.30  Aligned_cols=142  Identities=18%  Similarity=0.244  Sum_probs=96.0

Q ss_pred             CCCceEEEecCCccccchhhhhhhc------cCC------------C-----------C-CChHHHHHHHHh--------
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKR------YGC------------D-----------P-YDPAGFRAWALK--------  140 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~------~g~------------~-----------~-~~~~~~~~~~~~--------  140 (254)
                      .+..+++||+||||++|...|.+..      +|.            .           . .++-+|.++..+        
T Consensus         8 ~~~~~~lfD~dG~lvdte~~y~~~~~~~~~~ygk~~~~~~~~~~mG~~~~eaa~~~~~~~~dp~s~ee~~~e~~~~~~~~   87 (222)
T KOG2914|consen    8 LKVSACLFDMDGTLVDTEDLYTEAWQELLDRYGKPYPWDVKVKSMGKRTSEAARLFVKKLPDPVSREEFNKEEEEILDRL   87 (222)
T ss_pred             cceeeEEEecCCcEEecHHHHHHHHHHHHHHcCCCChHHHHHHHcCCCHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence            3467899999999999998776632      221            0           0 122233333321        


Q ss_pred             -CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCC-CCC-CCcEEEecCC---CCCCCCc-ccHHHHH
Q 025360          141 -GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQG-FVG-YERLIMRTAA---DKGKNAV-TYKSEIR  213 (254)
Q Consensus       141 -~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G-~~~-~~~lilr~~~---~~~kp~~-~yK~~~r  213 (254)
                       .....+||+.+|++.|+.+|+++.++|+++ ....+   ..+..++ +-. +.+.++ +++   ..+||++ +|..   
T Consensus        88 ~~~~~~~PGa~kLv~~L~~~gip~alat~s~-~~~~~---~k~~~~~~~~~~f~~~v~-~d~~~v~~gKP~Pdi~l~---  159 (222)
T KOG2914|consen   88 FMNSILMPGAEKLVNHLKNNGIPVALATSST-SASFE---LKISRHEDIFKNFSHVVL-GDDPEVKNGKPDPDIYLK---  159 (222)
T ss_pred             ccccccCCcHHHHHHHHHhCCCCeeEEecCC-cccHH---HHHHHhhHHHHhcCCCee-cCCccccCCCCCchHHHH---
Confidence             467899999999999999999999999998 44443   3334333 322 233344 333   4567766 4443   


Q ss_pred             HHHHHcCC---cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          214 KQLLEEGY---RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       214 ~~l~~~Gy---~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                       +....|.   .-|++++|+..++++++ +|+.++.+|++
T Consensus       160 -A~~~l~~~~~~k~lVfeds~~Gv~aa~aagm~vi~v~~~  198 (222)
T KOG2914|consen  160 -AAKRLGVPPPSKCLVFEDSPVGVQAAKAAGMQVVGVATP  198 (222)
T ss_pred             -HHHhcCCCCccceEEECCCHHHHHHHHhcCCeEEEecCC
Confidence             3343443   45999999999999998 79999999983

>PLN02811 hydrolase

Probab=99.16  E-value=2.3e-10  Score=98.62  Aligned_cols=101  Identities=15%  Similarity=0.171  Sum_probs=74.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH-HHHHHHHhCCCCCCCcEEEecC--C-CCCCCCcccHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ-VTRDNLHNQGFVGYERLIMRTA--A-DKGKNAVTYKSEIRKQLL  217 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~-~T~~~L~~~G~~~~~~lilr~~--~-~~~kp~~~yK~~~r~~l~  217 (254)
                      ..+++||+.++|+.|+++|++++++||..    +. .....++..|+..|++.++..+  + ..+||.+.   ..+..++
T Consensus        76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~----~~~~~~~~~~~~~l~~~f~~i~~~~~~~~~~~KP~p~---~~~~a~~  148 (220)
T PLN02811         76 TSDLMPGAERLVRHLHAKGIPIAIATGSH----KRHFDLKTQRHGELFSLMHHVVTGDDPEVKQGKPAPD---IFLAAAR  148 (220)
T ss_pred             hCCCCccHHHHHHHHHHCCCcEEEEeCCc----hhhHHHHHcccHHHHhhCCEEEECChhhccCCCCCcH---HHHHHHH
Confidence            46789999999999999999999999988    43 3333344447766777777776  4 34576552   2233445


Q ss_pred             HcC---C--cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          218 EEG---Y--RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       218 ~~G---y--~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      +.|   .  ..|++|||+.+|+++|+ +|.+++.++++
T Consensus       149 ~~~~~~~~~~~~v~IgDs~~di~aA~~aG~~~i~v~~~  186 (220)
T PLN02811        149 RFEDGPVDPGKVLVFEDAPSGVEAAKNAGMSVVMVPDP  186 (220)
T ss_pred             HhCCCCCCccceEEEeccHhhHHHHHHCCCeEEEEeCC
Confidence            443   3  45999999999999997 79999999754

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.16  E-value=4.2e-11  Score=97.41  Aligned_cols=123  Identities=12%  Similarity=-0.015  Sum_probs=82.0

Q ss_pred             CceEEEecCCccccchhhh----hhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360          101 MDAWILDVDDTCISNVYYY----KGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      +..+|+|+||||+.+..--    ....+... +.   ...-.......+.||+.++|+.|+ +|++++++|+..    +.
T Consensus         2 k~~lvldld~tl~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~----~~   72 (148)
T smart00577        2 KKTLVLDLDETLVHSTHRSFKEWTNRDFIVP-VL---IDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGL----RM   72 (148)
T ss_pred             CcEEEEeCCCCeECCCCCcCCCCCccceEEE-EE---eCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCc----HH
Confidence            6789999999999874200    00000000 00   000000113467999999999998 679999999999    77


Q ss_pred             HHHHHHHhCCCCC-CCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc
Q 025360          177 VTRDNLHNQGFVG-YERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       177 ~T~~~L~~~G~~~-~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~  238 (254)
                      .++..|+..|+.. +++.++..++ ..+||.  |..    .++..|.  +.|++|||+..|+.+++
T Consensus        73 ~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~--~~k----~l~~l~~~p~~~i~i~Ds~~~~~aa~  132 (148)
T smart00577       73 YADPVLDLLDPKKYFGYRRLFRDECVFVKGK--YVK----DLSLLGRDLSNVIIIDDSPDSWPFHP  132 (148)
T ss_pred             HHHHHHHHhCcCCCEeeeEEECccccccCCe--Eee----cHHHcCCChhcEEEEECCHHHhhcCc
Confidence            7888899888854 4466666555 556664  332    3555554  46999999999999987

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=99.13  E-value=5.4e-10  Score=92.67  Aligned_cols=144  Identities=18%  Similarity=0.143  Sum_probs=95.9

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCC---------ChHHHHHHHHhC--CCCCchHHHHHHHHHHHCCCeEEE
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPY---------DPAGFRAWALKG--GCPAIPGVLVLFNKLIESGLKVIL  165 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~---------~~~~~~~~~~~~--~~~~~pg~~ell~~L~~~G~~i~~  165 (254)
                      .+..+-+|-||||+|+|-++|++-   +|.+.|         ++.-|++-....  -.-|.+-+.+|++.-+.+|-+|+|
T Consensus        59 eG~~Pi~VsFDIDDTvLFsSp~F~---~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~F  135 (237)
T COG3700          59 EGRPPIAVSFDIDDTVLFSSPGFW---RGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYF  135 (237)
T ss_pred             cCCCCeeEeeccCCeeEecccccc---cCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEE
Confidence            456688999999999999888763   333222         233344322221  245777889999999999999999


Q ss_pred             EeCCCccccHHHHHHHHHh-CCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cC---
Q 025360          166 VTGRDEETFGQVTRDNLHN-QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TG---  240 (254)
Q Consensus       166 vTgR~~e~~r~~T~~~L~~-~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g---  240 (254)
                      +|||+ ...-+.+.+.|.+ +.+.....+++.++  +.||...-|.   ..|++.+  +-+..||+.+|+.+|+ +|   
T Consensus       136 vTGRt-~gk~d~vsk~Lak~F~i~~m~pv~f~Gd--k~k~~qy~Kt---~~i~~~~--~~IhYGDSD~Di~AAkeaG~Rg  207 (237)
T COG3700         136 VTGRT-PGKTDTVSKTLAKNFHITNMNPVIFAGD--KPKPGQYTKT---QWIQDKN--IRIHYGDSDNDITAAKEAGARG  207 (237)
T ss_pred             EecCC-CCcccccchhHHhhcccCCCcceeeccC--CCCccccccc---HHHHhcC--ceEEecCCchhhhHHHhcCccc
Confidence            99999 5544555556654 46655555666654  3344333343   3566554  5567999999999998 44   


Q ss_pred             CcEEEeCCCCC
Q 025360          241 NRTFKLPNPMY  251 (254)
Q Consensus       241 ~r~fklPNp~y  251 (254)
                      .|...-||..|
T Consensus       208 IRilRAaNSTy  218 (237)
T COG3700         208 IRILRAANSTY  218 (237)
T ss_pred             eeEEecCCccC
Confidence            45555588877

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=99.13  E-value=9.8e-11  Score=96.77  Aligned_cols=82  Identities=13%  Similarity=0.085  Sum_probs=64.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCc-ccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAV-TYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~-~yK~~~r~~l~~~  219 (254)
                      ..+++||+.++|+       +++++||.+    +......|+++|+..+++.+++.++ ...||++ .|.    ..++..
T Consensus        88 ~~~~~~g~~~~L~-------~~~i~Tn~~----~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~----~~~~~~  152 (175)
T TIGR01493        88 NLPPWPDSAAALA-------RVAILSNAS----HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYE----LVFDTV  152 (175)
T ss_pred             cCCCCCchHHHHH-------HHhhhhCCC----HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHH----HHHHHH
Confidence            4578999999998       388999999    7777888999999888777777665 4567765 333    345555


Q ss_pred             CCc--EEEEEcCCcccccccc
Q 025360          220 GYR--IWGNIGDQWSDLQGEC  238 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~  238 (254)
                      |..  .|++|||+..|+.||+
T Consensus       153 ~~~p~~~l~vgD~~~Di~~A~  173 (175)
T TIGR01493       153 GLPPDRVLMVAAHQWDLIGAR  173 (175)
T ss_pred             CCCHHHeEeEecChhhHHHHh
Confidence            654  5999999999999986

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=99.11  E-value=7.2e-10  Score=92.23  Aligned_cols=110  Identities=21%  Similarity=0.254  Sum_probs=80.9

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      .+.+++++|+|||++...                         ...++|++.++++.|+++|++++++||.+ .  +..+
T Consensus        23 ~~v~~vv~D~Dgtl~~~~-------------------------~~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~-~--~~~~   74 (170)
T TIGR01668        23 VGIKGVVLDKDNTLVYPD-------------------------HNEAYPALRDWIEELKAAGRKLLIVSNNA-G--EQRA   74 (170)
T ss_pred             CCCCEEEEecCCccccCC-------------------------CCCcChhHHHHHHHHHHcCCEEEEEeCCc-h--HHHH
Confidence            568899999999998642                         34689999999999999999999999988 3  2344


Q ss_pred             HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360          179 RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQW-SDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       179 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~-sDi~ga~-~g~r~fklP  247 (254)
                      ...++..|+..+.        ...||.+   ......+++.|.+  .+++|||+. +|+.+|+ +|..++.+.
T Consensus        75 ~~~~~~~gl~~~~--------~~~KP~p---~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA~~aGi~~i~v~  136 (170)
T TIGR01668        75 KAVEKALGIPVLP--------HAVKPPG---CAFRRAHPEMGLTSEQVAVVGDRLFTDVMGGNRNGSYTILVE  136 (170)
T ss_pred             HHHHHHcCCEEEc--------CCCCCCh---HHHHHHHHHcCCCHHHEEEECCcchHHHHHHHHcCCeEEEEc
Confidence            4556677775221        1235433   3334455666653  499999998 7999997 788888773

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=99.10  E-value=1.5e-10  Score=96.47  Aligned_cols=117  Identities=17%  Similarity=0.139  Sum_probs=81.7

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+++|||+|||+.|..-++...+..-..|+              ...  -.-++.|+++|++++++||++    ...+..
T Consensus         7 i~~~v~d~dGv~tdg~~~~~~~g~~~~~~~--------------~~D--~~~~~~L~~~Gi~laIiT~k~----~~~~~~   66 (169)
T TIGR02726         7 IKLVILDVDGVMTDGRIVINDEGIESRNFD--------------IKD--GMGVIVLQLCGIDVAIITSKK----SGAVRH   66 (169)
T ss_pred             CeEEEEeCceeeECCeEEEcCCCcEEEEEe--------------cch--HHHHHHHHHCCCEEEEEECCC----cHHHHH
Confidence            789999999999998766654331111121              111  123677889999999999999    788889


Q ss_pred             HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360          181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      .|+++|+..|++.+      ++||     ..++..+...|..  .+++|||+.+|+.++......|..+|
T Consensus        67 ~l~~lgi~~~f~~~------kpkp-----~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~n  125 (169)
T TIGR02726        67 RAEELKIKRFHEGI------KKKT-----EPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVGD  125 (169)
T ss_pred             HHHHCCCcEEEecC------CCCH-----HHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECcC
Confidence            99999998655421      2222     3445556666654  59999999999999984446666665

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=99.07  E-value=1.4e-10  Score=97.70  Aligned_cols=112  Identities=19%  Similarity=0.222  Sum_probs=75.5

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.+.|+||+||||+++.-++....-....++     .         ..  ...++.|+++|++++++|||+    ...+.
T Consensus        20 ~ikli~~D~Dgtl~~~~i~~~~~~~~~~~~~-----~---------~d--~~~i~~L~~~Gi~v~I~T~~~----~~~v~   79 (183)
T PRK09484         20 NIRLLICDVDGVFSDGLIYMGNNGEELKAFN-----V---------RD--GYGIRCLLTSGIEVAIITGRK----SKLVE   79 (183)
T ss_pred             CceEEEEcCCeeeecCEEEEcCCCCEEEEEe-----c---------cc--hHHHHHHHHCCCEEEEEeCCC----cHHHH
Confidence            5889999999999987422221100000010     0         00  135677888999999999999    67788


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCc
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNR  242 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r  242 (254)
                      ..++++|+..++.    +  ...|     ...+++.+++.|..  .+++|||+.+|+.++. +|..
T Consensus        80 ~~l~~lgl~~~f~----g--~~~k-----~~~l~~~~~~~gl~~~ev~~VGDs~~D~~~a~~aG~~  134 (183)
T PRK09484         80 DRMTTLGITHLYQ----G--QSNK-----LIAFSDLLEKLAIAPEQVAYIGDDLIDWPVMEKVGLS  134 (183)
T ss_pred             HHHHHcCCceeec----C--CCcH-----HHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCe
Confidence            8999999975432    2  1122     24555666777754  6999999999999997 6765

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=99.06  E-value=2.4e-09  Score=91.75  Aligned_cols=100  Identities=13%  Similarity=0.063  Sum_probs=70.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCC-CCCC--CCcccHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAA-DKGK--NAVTYKSEIRKQL  216 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~-~~~k--p~~~yK~~~r~~l  216 (254)
                      ..++.||+.++++.+++.| +++++||..    +..+...++++|++.++.  +.+.+.+ ..+.  ....-|....+++
T Consensus        66 ~i~l~pga~ell~~lk~~~-~~~IVS~~~----~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l  140 (203)
T TIGR02137        66 TLKPLEGAVEFVDWLRERF-QVVILSDTF----YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAF  140 (203)
T ss_pred             hCCCCccHHHHHHHHHhCC-eEEEEeCCh----HHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHH
Confidence            4579999999999999985 999999999    788888999999986543  4443211 1111  1123466666667


Q ss_pred             HHcCCcEEEEEcCCcccccccc-cCCcEEEeC
Q 025360          217 LEEGYRIWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       217 ~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      .+.|. .+++|||+.+|+.... +|..+..-|
T Consensus       141 ~~~~~-~~v~vGDs~nDl~ml~~Ag~~ia~~a  171 (203)
T TIGR02137       141 KSLYY-RVIAAGDSYNDTTMLSEAHAGILFHA  171 (203)
T ss_pred             HhhCC-CEEEEeCCHHHHHHHHhCCCCEEecC
Confidence            66664 5889999999998877 454444333

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=99.03  E-value=2.5e-09  Score=90.35  Aligned_cols=103  Identities=18%  Similarity=0.066  Sum_probs=72.2

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCC-CCCCCC-----cccHH-HHH
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAA-DKGKNA-----VTYKS-EIR  213 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~-~~~kp~-----~~yK~-~~r  213 (254)
                      ....|++.++++.++++|++++++|+.+    +......++.+|++.+..  +....++ ..++..     ..-|. .++
T Consensus        86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~----~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~K~~~l~  161 (202)
T TIGR01490        86 SILYPEARDLIRWHKAEGHTIVLVSASL----TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEGKVHALA  161 (202)
T ss_pred             HhccHHHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChHHHHHHH
Confidence            4689999999999999999999999999    667777888899976432  2221221 122211     11232 233


Q ss_pred             HHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          214 KQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       214 ~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      +.+.+.|..  .++++||+.+|+..+. +|..++.-|+|
T Consensus       162 ~~~~~~~~~~~~~~~~gDs~~D~~~~~~a~~~~~v~~~~  200 (202)
T TIGR01490       162 ELLAEEQIDLKDSYAYGDSISDLPLLSLVGHPYVVNPDK  200 (202)
T ss_pred             HHHHHcCCCHHHcEeeeCCcccHHHHHhCCCcEEeCCCC
Confidence            344555654  6899999999999887 67777777876

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=99.00  E-value=2.9e-09  Score=81.40  Aligned_cols=58  Identities=21%  Similarity=0.355  Sum_probs=50.1

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      ++||+||||...                           ..++||+.++++.|+++|.+++|+||++ ...++...+.|+
T Consensus         1 ~l~D~dGvl~~g---------------------------~~~ipga~e~l~~L~~~g~~~~~lTNns-~~s~~~~~~~L~   52 (101)
T PF13344_consen    1 FLFDLDGVLYNG---------------------------NEPIPGAVEALDALRERGKPVVFLTNNS-SRSREEYAKKLK   52 (101)
T ss_dssp             EEEESTTTSEET---------------------------TEE-TTHHHHHHHHHHTTSEEEEEES-S-SS-HHHHHHHHH
T ss_pred             CEEeCccEeEeC---------------------------CCcCcCHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHHHHHH
Confidence            689999999864                           4589999999999999999999999999 888899999999


Q ss_pred             hCCCCC
Q 025360          184 NQGFVG  189 (254)
Q Consensus       184 ~~G~~~  189 (254)
                      +.|++.
T Consensus        53 ~~Gi~~   58 (101)
T PF13344_consen   53 KLGIPV   58 (101)
T ss_dssp             HTTTT-
T ss_pred             hcCcCC
Confidence            999984

...

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=99.00  E-value=6.6e-09  Score=89.22  Aligned_cols=99  Identities=13%  Similarity=0.049  Sum_probs=65.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC---cEEEecCC-CCCCCCc-c---------
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE---RLIMRTAA-DKGKNAV-T---------  207 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~---~lilr~~~-~~~kp~~-~---------  207 (254)
                      ..++.||+.++++.|+++|++++++|+..    +.....+|+.++.....   ++.+.+.. ...+|.+ .         
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~----~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~~~cg~  143 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGM----DFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQNQCGC  143 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCc----HHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccccCCCC
Confidence            57899999999999999999999999999    67777778776443221   23333322 1223322 1         


Q ss_pred             cHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEE
Q 025360          208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFK  245 (254)
Q Consensus       208 yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fk  245 (254)
                      -|..+.+.+.. ....+++|||+.+|+.++..+..+|.
T Consensus       144 ~K~~~l~~~~~-~~~~~i~iGDg~~D~~~a~~Ad~~~a  180 (214)
T TIGR03333       144 CKPSLIRKLSE-PNDYHIVIGDSVTDVEAAKQSDLCFA  180 (214)
T ss_pred             CHHHHHHHHhh-cCCcEEEEeCCHHHHHHHHhCCeeEe
Confidence            24444444443 23457899999999999985544443

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=98.99  E-value=5e-09  Score=86.36  Aligned_cols=94  Identities=19%  Similarity=0.152  Sum_probs=64.4

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEec--CC-CCC------CCCcccHHH
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRT--AA-DKG------KNAVTYKSE  211 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~--~~-~~~------kp~~~yK~~  211 (254)
                      ...++.||+.++++.++++|++++++|+..    +..++..++++|+..+....+..  ++ ..+      .+...-|..
T Consensus        70 ~~~~~~~g~~~~l~~l~~~g~~~~ivS~~~----~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~K~~  145 (177)
T TIGR01488        70 RQVALRPGARELISWLKERGIDTVIVSGGF----DFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGECKGK  145 (177)
T ss_pred             hcCCcCcCHHHHHHHHHHCCCEEEEECCCc----HHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcchHHH
Confidence            346678999999999999999999999999    78888999999997643222221  11 011      111233544


Q ss_pred             HHHHH-HHcC--CcEEEEEcCCcccccccc
Q 025360          212 IRKQL-LEEG--YRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       212 ~r~~l-~~~G--y~i~~~IGDq~sDi~ga~  238 (254)
                      ..+++ ...|  +..+++|||+.+|+..+.
T Consensus       146 ~l~~~~~~~~~~~~~~~~iGDs~~D~~~~~  175 (177)
T TIGR01488       146 VLKELLEESKITLKKIIAVGDSVNDLPMLK  175 (177)
T ss_pred             HHHHHHHHhCCCHHHEEEEeCCHHHHHHHh
Confidence            44443 3334  345899999999997754

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=98.96  E-value=2.8e-09  Score=93.26  Aligned_cols=102  Identities=19%  Similarity=0.218  Sum_probs=73.4

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      +..++++||+|||+.+.                           ..++||+.++++.|+++|++++|+||++ .. +...
T Consensus         6 ~~~~~~~~D~dG~l~~~---------------------------~~~~pga~e~L~~L~~~G~~~~ivTN~~-~~-~~~~   56 (242)
T TIGR01459         6 NDYDVFLLDLWGVIIDG---------------------------NHTYPGAVQNLNKIIAQGKPVYFVSNSP-RN-IFSL   56 (242)
T ss_pred             hcCCEEEEecccccccC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCC-CC-hHHH
Confidence            34779999999999874                           4579999999999999999999999977 32 2233


Q ss_pred             HHHHHhCCCCC-CCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccc
Q 025360          179 RDNLHNQGFVG-YERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQG  236 (254)
Q Consensus       179 ~~~L~~~G~~~-~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~g  236 (254)
                      .+.|+++|++. +++.++.+....       ...++..+.+.|.  +.+.+|||+..|+..
T Consensus        57 ~~~L~~~gl~~~~~~~Ii~s~~~~-------~~~l~~~~~~~~~~~~~~~~vGd~~~d~~~  110 (242)
T TIGR01459        57 HKTLKSLGINADLPEMIISSGEIA-------VQMILESKKRFDIRNGIIYLLGHLENDIIN  110 (242)
T ss_pred             HHHHHHCCCCccccceEEccHHHH-------HHHHHhhhhhccCCCceEEEeCCcccchhh
Confidence            37899999986 677777754311       1223333334343  358889998777643

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR01684 viral_ppase viral phosphatase

Probab=98.92  E-value=6.4e-09  Score=93.19  Aligned_cols=73  Identities=15%  Similarity=0.205  Sum_probs=61.9

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCC-chHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPA-IPGVLVLFNKLIESGLKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~  177 (254)
                      .-++.|+||+||||++..                        ..... -||+.++|++|+++|++++++||+.    |..
T Consensus       124 ~~~kvIvFDLDgTLi~~~------------------------~~v~irdPgV~EaL~~LkekGikLaIaTS~~----Re~  175 (301)
T TIGR01684       124 EPPHVVVFDLDSTLITDE------------------------EPVRIRDPRIYDSLTELKKRGCILVLWSYGD----RDH  175 (301)
T ss_pred             ccceEEEEecCCCCcCCC------------------------CccccCCHHHHHHHHHHHHCCCEEEEEECCC----HHH
Confidence            457899999999999863                        12323 4999999999999999999999999    788


Q ss_pred             HHHHHHhCCCCCCCcEEEecCC
Q 025360          178 TRDNLHNQGFVGYERLIMRTAA  199 (254)
Q Consensus       178 T~~~L~~~G~~~~~~lilr~~~  199 (254)
                      ..+.|++.|+..|++.++++.+
T Consensus       176 v~~~L~~lGLd~YFdvIIs~Gd  197 (301)
T TIGR01684       176 VVESMRKVKLDRYFDIIISGGH  197 (301)
T ss_pred             HHHHHHHcCCCcccCEEEECCc
Confidence            8899999999998888877765

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=98.91  E-value=5.3e-09  Score=101.14  Aligned_cols=118  Identities=14%  Similarity=0.086  Sum_probs=81.3

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCC--ChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcc----
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPY--DPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEE----  172 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~--~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e----  172 (254)
                      +..+++.||+||||+.+..        +..|  ++..|        ..++||+.+.|+.|+++|++|+++||.. .    
T Consensus       166 ~~~Kia~fD~DGTLi~t~s--------g~~~~~~~~d~--------~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~-gI~~G  228 (526)
T TIGR01663       166 GQEKIAGFDLDGTIIKTKS--------GKVFPKGPDDW--------QIIFPEIPEKLKELEADGFKICIFTNQG-GIARG  228 (526)
T ss_pred             ccCcEEEEECCCCccccCC--------CccCCCCHHHe--------eecccCHHHHHHHHHHCCCEEEEEECCc-ccccC
Confidence            4468999999999997631        1112  33333        1267999999999999999999999987 3    


Q ss_pred             -----ccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC------CcEEEEEcCCcccccccc
Q 025360          173 -----TFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG------YRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       173 -----~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G------y~i~~~IGDq~sDi~ga~  238 (254)
                           .....+...|+++|++  ++++..... ..+||.+   .++...+...+      ...+++|||...|+.++.
T Consensus       229 ~~~~~~~~~ki~~iL~~lgip--fdviia~~~~~~RKP~p---Gm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~  301 (526)
T TIGR01663       229 KINADDFKAKIEAIVAKLGVP--FQVFIAIGAGFYRKPLT---GMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGK  301 (526)
T ss_pred             cccHHHHHHHHHHHHHHcCCc--eEEEEeCCCCCCCCCCH---HHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHH
Confidence                 2224567889999997  446666554 4567644   23333344332      234999999999997654

Note that the EC number for the kinase function is: 2.7.1.78

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=98.89  E-value=2.5e-08  Score=91.24  Aligned_cols=103  Identities=18%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEE-----ecCCCCCCCCcccHHHH-H
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIM-----RTAADKGKNAVTYKSEI-R  213 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lil-----r~~~~~~kp~~~yK~~~-r  213 (254)
                      ..++.||+.++++.|++.|++++++||..    ...+...++++|+.....  +-+     ++...........|... +
T Consensus       179 ~l~l~pGa~elL~~Lk~~G~~~aIvSgg~----~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K~~~L~  254 (322)
T PRK11133        179 NLPLMPGLTELVLKLQALGWKVAIASGGF----TYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYKADTLT  254 (322)
T ss_pred             hCCCChhHHHHHHHHHHcCCEEEEEECCc----chhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccHHHHHH
Confidence            47899999999999999999999999998    455666777888864211  111     11100000001224333 3


Q ss_pred             HHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCCC
Q 025360          214 KQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       214 ~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPNp  249 (254)
                      +.++..|.  ..+++|||+.+|+..+.+....+.+ |+
T Consensus       255 ~la~~lgi~~~qtIaVGDg~NDl~m~~~AGlgiA~-nA  291 (322)
T PRK11133        255 RLAQEYEIPLAQTVAIGDGANDLPMIKAAGLGIAY-HA  291 (322)
T ss_pred             HHHHHcCCChhhEEEEECCHHHHHHHHHCCCeEEe-CC
Confidence            33455665  4699999999999988733345554 54

>PLN02645 phosphoglycolate phosphatase

Probab=98.88  E-value=9.1e-09  Score=93.55  Aligned_cols=70  Identities=20%  Similarity=0.258  Sum_probs=59.5

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++++||+||||++.                           ..++||+.++++.|+++|++++|+|||+ ...+....
T Consensus        27 ~~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~lr~~g~~~~~~TN~~-~~~~~~~~   78 (311)
T PLN02645         27 SVETFIFDCDGVIWKG---------------------------DKLIEGVPETLDMLRSMGKKLVFVTNNS-TKSRAQYG   78 (311)
T ss_pred             hCCEEEEeCcCCeEeC---------------------------CccCcCHHHHHHHHHHCCCEEEEEeCCC-CCCHHHHH
Confidence            4789999999999975                           2378999999999999999999999999 88888888


Q ss_pred             HHHHhCCCCCCCcEEEec
Q 025360          180 DNLHNQGFVGYERLIMRT  197 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~  197 (254)
                      +.|+++|++...+-++.+
T Consensus        79 ~~l~~lGi~~~~~~I~ts   96 (311)
T PLN02645         79 KKFESLGLNVTEEEIFSS   96 (311)
T ss_pred             HHHHHCCCCCChhhEeeh
Confidence            899999998544445544

>TIGR01686 FkbH FkbH-like domain

Probab=98.83  E-value=1.4e-08  Score=92.69  Aligned_cols=113  Identities=15%  Similarity=0.064  Sum_probs=81.6

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCC-CChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDP-YDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      .+++||+|+|+||-...       .|... ..         -.-..+++++.++++.|+++|++++++|+++    +..+
T Consensus         2 ~~k~~v~DlDnTlw~gv-------~~e~g~~~---------i~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~----~~~a   61 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGV-------LGEDGIDN---------LNLSPLHKTLQEKIKTLKKQGFLLALASKND----EDDA   61 (320)
T ss_pred             CeEEEEEcCCCCCCCCE-------EccCCccc---------cccCccHHHHHHHHHHHHhCCCEEEEEcCCC----HHHH
Confidence            37899999999998652       11000 00         0013468999999999999999999999999    7788


Q ss_pred             HHHHHh----CCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--CcEEEEEcCCccccccccc
Q 025360          179 RDNLHN----QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--YRIWGNIGDQWSDLQGECT  239 (254)
Q Consensus       179 ~~~L~~----~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y~i~~~IGDq~sDi~ga~~  239 (254)
                      ...|++    .|+..++..+....  ++|     ...++..+++.|  ...+++|||+..|+.++++
T Consensus        62 ~~~l~~~~~~~~~~~~f~~~~~~~--~pk-----~~~i~~~~~~l~i~~~~~vfidD~~~d~~~~~~  121 (320)
T TIGR01686        62 KKVFERRKDFILQAEDFDARSINW--GPK-----SESLRKIAKKLNLGTDSFLFIDDNPAERANVKI  121 (320)
T ss_pred             HHHHHhCccccCcHHHeeEEEEec--Cch-----HHHHHHHHHHhCCCcCcEEEECCCHHHHHHHHH
Confidence            888998    88877766654432  222     234445555554  4679999999999999884

The C-terminal portion of this domain is unique to this family (by BLAST).

>PRK11590 hypothetical protein; Provisional

Probab=98.79  E-value=1.1e-07  Score=81.59  Aligned_cols=103  Identities=19%  Similarity=0.146  Sum_probs=67.9

Q ss_pred             CCCchHHHHHH-HHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--CCCC--CCcccHHHHHHHHH
Q 025360          143 CPAIPGVLVLF-NKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--DKGK--NAVTYKSEIRKQLL  217 (254)
Q Consensus       143 ~~~~pg~~ell-~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~k--p~~~yK~~~r~~l~  217 (254)
                      ..++||+.+++ +.++++|++++++||++    +..++..+..+|+-.-++++-+.-+  ..++  ....+.++....+.
T Consensus        94 ~~~~pga~e~L~~~l~~~G~~l~IvSas~----~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~K~~~l~  169 (211)
T PRK11590         94 VTAFPVVQERLTTYLLSSDADVWLITGSP----QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHEKVAQLE  169 (211)
T ss_pred             CcCCccHHHHHHHHHHhCCCEEEEEeCCc----HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChHHHHHHH
Confidence            56799999999 57888999999999999    7788888898885222334332211  1122  11244455455554


Q ss_pred             Hc---CCcEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          218 EE---GYRIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       218 ~~---Gy~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      +.   ....+...||+.+|+.=-. ++..+..=|+|
T Consensus       170 ~~~~~~~~~~~aY~Ds~~D~pmL~~a~~~~~vnp~~  205 (211)
T PRK11590        170 RKIGTPLRLYSGYSDSKQDNPLLYFCQHRWRVTPRG  205 (211)
T ss_pred             HHhCCCcceEEEecCCcccHHHHHhCCCCEEECccH
Confidence            32   4456778999999996544 45555555765

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=98.78  E-value=1.1e-07  Score=79.05  Aligned_cols=120  Identities=22%  Similarity=0.202  Sum_probs=80.3

Q ss_pred             hcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCe--EEEEeCCCccc
Q 025360           96 LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLK--VILVTGRDEET  173 (254)
Q Consensus        96 ~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~--i~~vTgR~~e~  173 (254)
                      ++..|.+++|||.|+||....                         .....|...+.++++++.+..  |.++||..+..
T Consensus        36 Lk~~Gik~li~DkDNTL~~~~-------------------------~~~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~   90 (168)
T PF09419_consen   36 LKKKGIKALIFDKDNTLTPPY-------------------------EDEIPPEYAEWLNELKKQFGKDRVLIVSNSAGSS   90 (168)
T ss_pred             hhhcCceEEEEcCCCCCCCCC-------------------------cCcCCHHHHHHHHHHHHHCCCCeEEEEECCCCcc
Confidence            345789999999999998642                         356778899999999999875  99999985211


Q ss_pred             ---cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHc----CCcEEEEEcCCc-ccccccc-cCCcEE
Q 025360          174 ---FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEE----GYRIWGNIGDQW-SDLQGEC-TGNRTF  244 (254)
Q Consensus       174 ---~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~----Gy~i~~~IGDq~-sDi~ga~-~g~r~f  244 (254)
                         .....+..-+.+|++     +++-.  ..||. . ...+.+.+...    ....+++||||. +|+.+|. .|..++
T Consensus        91 ~d~~~~~a~~~~~~lgIp-----vl~h~--~kKP~-~-~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~~G~~ti  161 (168)
T PF09419_consen   91 DDPDGERAEALEKALGIP-----VLRHR--AKKPG-C-FREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNRMGSYTI  161 (168)
T ss_pred             cCccHHHHHHHHHhhCCc-----EEEeC--CCCCc-c-HHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhccCceEE
Confidence               122333333567887     22221  33441 1 22333334332    245699999999 7999998 788888


Q ss_pred             EeCCC
Q 025360          245 KLPNP  249 (254)
Q Consensus       245 klPNp  249 (254)
                      .+-++
T Consensus       162 lv~~g  166 (168)
T PF09419_consen  162 LVTDG  166 (168)
T ss_pred             EEecC
Confidence            87665

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PRK08238 hypothetical protein; Validated

Probab=98.77  E-value=6.6e-08  Score=92.85  Aligned_cols=136  Identities=18%  Similarity=0.167  Sum_probs=83.2

Q ss_pred             CCCceEEEecCCccccchhhhhhhc--cCCCCC-----------ChHHHHHHHH------hCCCCCchHHHHHHHHHHHC
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKR--YGCDPY-----------DPAGFRAWAL------KGGCPAIPGVLVLFNKLIES  159 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~--~g~~~~-----------~~~~~~~~~~------~~~~~~~pg~~ell~~L~~~  159 (254)
                      ......+||+||||+.+.-...-..  ....|+           ......+.+.      ....+..|++.++++.++++
T Consensus         8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp~~pga~e~L~~lk~~   87 (479)
T PRK08238          8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLPYNEEVLDYLRAERAA   87 (479)
T ss_pred             CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCCCChhHHHHHHHHHHC
Confidence            3456799999999998753332211  111111           0111111111      12345679999999999999


Q ss_pred             CCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          160 GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       160 G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      |++++++|+++    +..++..++++|+  + +.++..++ ...|+..  |.....  +..|-+-+.++||+.+|+....
T Consensus        88 G~~v~LaTas~----~~~a~~i~~~lGl--F-d~Vigsd~~~~~kg~~--K~~~l~--~~l~~~~~~yvGDS~~Dlp~~~  156 (479)
T PRK08238         88 GRKLVLATASD----ERLAQAVAAHLGL--F-DGVFASDGTTNLKGAA--KAAALV--EAFGERGFDYAGNSAADLPVWA  156 (479)
T ss_pred             CCEEEEEeCCC----HHHHHHHHHHcCC--C-CEEEeCCCccccCCch--HHHHHH--HHhCccCeeEecCCHHHHHHHH
Confidence            99999999999    7777888888897  3 44555554 3333321  322111  2223333678999999999887


Q ss_pred             cCCcEEE
Q 025360          239 TGNRTFK  245 (254)
Q Consensus       239 ~g~r~fk  245 (254)
                      ...+.+.
T Consensus       157 ~A~~av~  163 (479)
T PRK08238        157 AARRAIV  163 (479)
T ss_pred             hCCCeEE
Confidence            4334443

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=98.74  E-value=3.6e-08  Score=83.29  Aligned_cols=126  Identities=21%  Similarity=0.324  Sum_probs=77.9

Q ss_pred             eEEEecCCccccchhhhhh---hccCCC------C---C-ChHHH--------HH---HHHh----CCCCCchHHHHHHH
Q 025360          103 AWILDVDDTCISNVYYYKG---KRYGCD------P---Y-DPAGF--------RA---WALK----GGCPAIPGVLVLFN  154 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~---~~~g~~------~---~-~~~~~--------~~---~~~~----~~~~~~pg~~ell~  154 (254)
                      .|.+||||||+|....+.+   ..|+..      .   | ....|        .+   ....    ...+|+||+.|.++
T Consensus         4 ~I~iDiDgVLad~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~g~~~~e~~~~~~~~~~~~~~f~~l~p~~gA~e~l~   83 (191)
T PF06941_consen    4 RIAIDIDGVLADFNSAFIEWFNEEFGKNPELTPEDITGYWDWEKWGITEPEFYEKLWRFYEEPGFFSNLPPIPGAVEALK   83 (191)
T ss_dssp             EEEEESBTTTB-HHHHHHHHHHHHTTTS----GGGGTSSSHHHHHHHHSTTHHHHHHHHHTSTTTTTT--B-TTHHHHHH
T ss_pred             EEEEECCCCCcccHHHHHHHHHHHcCCCCCCCHHHhhhhhHHHHhCCCCHHHHHHHHHHHhChhhhcCCCccHHHHHHHH
Confidence            3899999999998754433   234432      0   1 11112        11   1111    35789999999999


Q ss_pred             HHHHCCCeEEEEeCCCccc----cHHHHHHHHHhC--CCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEc
Q 025360          155 KLIESGLKVILVTGRDEET----FGQVTRDNLHNQ--GFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIG  228 (254)
Q Consensus       155 ~L~~~G~~i~~vTgR~~e~----~r~~T~~~L~~~--G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IG  228 (254)
                      .|.++|+.+++||+|+ ..    ..+.|.+||+++  +++ ++.+++.++    |      ..    +   +.+  +.|+
T Consensus        84 ~L~~~g~~~~~Itar~-~~~~~~~~~~k~~Wl~~hf~~i~-~~~~~~~~~----K------~~----v---~~D--vlID  142 (191)
T PF06941_consen   84 KLRDKGHEIVIITARP-PEFPDHSAEEKREWLERHFPFIP-YDNLIFTGD----K------TL----V---GGD--VLID  142 (191)
T ss_dssp             HHHTSTTEEEEEEE-S-SSSGCCCHHHHHHHHHHHHTHHH-HCCEEEESS----G------GG----C-----S--EEEE
T ss_pred             HHHHcCCcEEEEEecC-ccccchHHHHHHHHHHHHcCCCc-hheEEEecC----C------Ce----E---ecc--EEec
Confidence            9999999999999998 54    578999999998  444 677887743    1      10    1   123  5699


Q ss_pred             CCccccccc-ccCCcEEEeCCC
Q 025360          229 DQWSDLQGE-CTGNRTFKLPNP  249 (254)
Q Consensus       229 Dq~sDi~ga-~~g~r~fklPNp  249 (254)
                      |+..-+... ..|..++.+..|
T Consensus       143 D~~~n~~~~~~~g~~~iLfd~p  164 (191)
T PF06941_consen  143 DRPHNLEQFANAGIPVILFDQP  164 (191)
T ss_dssp             SSSHHHSS-SSESSEEEEE--G
T ss_pred             CChHHHHhccCCCceEEEEcCC
Confidence            998765543 357778877665

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=98.73  E-value=5.8e-08  Score=87.16  Aligned_cols=73  Identities=19%  Similarity=0.224  Sum_probs=61.1

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCC-chHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPA-IPGVLVLFNKLIESGLKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~  177 (254)
                      .-++.|+||+||||+...                        ..... -|++.++|.+|+++|++++++||++    +..
T Consensus       126 ~~~~~i~~D~D~TL~~~~------------------------~~v~irdp~V~EtL~eLkekGikLaIvTNg~----Re~  177 (303)
T PHA03398        126 EIPHVIVFDLDSTLITDE------------------------EPVRIRDPFVYDSLDELKERGCVLVLWSYGN----REH  177 (303)
T ss_pred             eeccEEEEecCCCccCCC------------------------CccccCChhHHHHHHHHHHCCCEEEEEcCCC----hHH
Confidence            457889999999999863                        12223 4999999999999999999999998    778


Q ss_pred             HHHHHHhCCCCCCCcEEEecCC
Q 025360          178 TRDNLHNQGFVGYERLIMRTAA  199 (254)
Q Consensus       178 T~~~L~~~G~~~~~~lilr~~~  199 (254)
                      ....|+++|+..+++.++++.+
T Consensus       178 v~~~Le~lgL~~yFDvII~~g~  199 (303)
T PHA03398        178 VVHSLKETKLEGYFDIIICGGR  199 (303)
T ss_pred             HHHHHHHcCCCccccEEEECCC
Confidence            8899999999998887777654

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=98.73  E-value=1.8e-07  Score=78.65  Aligned_cols=127  Identities=22%  Similarity=0.223  Sum_probs=86.7

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc--------c
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE--------E  172 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~--------e  172 (254)
                      .+++++|-||||..-.+-|.           .++++      -...||+.+.+..|++.|++++++||-++        +
T Consensus         5 ~k~lflDRDGtin~d~~~yv-----------~~~~~------~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~   67 (181)
T COG0241           5 QKALFLDRDGTINIDKGDYV-----------DSLDD------FQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEA   67 (181)
T ss_pred             CcEEEEcCCCceecCCCccc-----------CcHHH------hccCccHHHHHHHHHhCCCeEEEEECCCCccccCccHH
Confidence            68999999999986542111           11223      34889999999999999999999999754        1


Q ss_pred             ---ccHHHHHHHHHhCCCCCCCcEEEecCCC-----CCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCC
Q 025360          173 ---TFGQVTRDNLHNQGFVGYERLIMRTAAD-----KGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGN  241 (254)
Q Consensus       173 ---~~r~~T~~~L~~~G~~~~~~lilr~~~~-----~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~  241 (254)
                         ...+.....|++.|.. .+.++.++...     -+||.   .-.+...+.+.+.+  ...+|||..+|+++|. +|.
T Consensus        68 ~f~~~~~~m~~~l~~~gv~-id~i~~Cph~p~~~c~cRKP~---~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~gi  143 (181)
T COG0241          68 DFDKLHNKMLKILASQGVK-IDGILYCPHHPEDNCDCRKPK---PGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAGI  143 (181)
T ss_pred             HHHHHHHHHHHHHHHcCCc-cceEEECCCCCCCCCcccCCC---hHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCCC
Confidence               1223345677888885 67777776542     24542   23344455554443  5889999999999998 676


Q ss_pred             cEEEeCC
Q 025360          242 RTFKLPN  248 (254)
Q Consensus       242 r~fklPN  248 (254)
                      +.+.+=+
T Consensus       144 ~~~~~~~  150 (181)
T COG0241         144 KGVLVLT  150 (181)
T ss_pred             CceEEEc
Confidence            6665533

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=98.69  E-value=3e-07  Score=79.38  Aligned_cols=102  Identities=19%  Similarity=0.089  Sum_probs=69.2

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC-C-CCCC---C--CcccHHHHH-H
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA-A-DKGK---N--AVTYKSEIR-K  214 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~-~-~~~k---p--~~~yK~~~r-~  214 (254)
                      .+..||+.++++.++++|++++++||..    ...+....+.+|++.+....+... + ..++   +  ....|.... +
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~----~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~K~~~l~~  151 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGF----TFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEGKAKALRE  151 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCCh----HHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcchHHHHHHH
Confidence            7889999999999999999999999999    677778888999986543322222 1 1221   0  123454444 3


Q ss_pred             HHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          215 QLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       215 ~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      -+.+.|.+  .+..+||+.+|+.--. +|..+..=|.
T Consensus       152 ~~~~~g~~~~~~~a~gDs~nDlpml~~ag~~ia~n~~  188 (212)
T COG0560         152 LAAELGIPLEETVAYGDSANDLPMLEAAGLPIAVNPK  188 (212)
T ss_pred             HHHHcCCCHHHeEEEcCchhhHHHHHhCCCCeEeCcC
Confidence            34556776  6999999999985443 3444444343

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=98.69  E-value=1e-07  Score=84.34  Aligned_cols=64  Identities=22%  Similarity=0.227  Sum_probs=54.2

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.++||+||||++..                       .....++|++.+.++.|+++|++++|+|||+ ...++...+.
T Consensus         2 k~i~~D~DGtl~~~~-----------------------~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~-~~~~~~~~~~   57 (257)
T TIGR01458         2 KGVLLDISGVLYISD-----------------------AKSGVAVPGSQEAVKRLRGASVKVRFVTNTT-KESKQDLLER   57 (257)
T ss_pred             CEEEEeCCCeEEeCC-----------------------CcccCcCCCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHH
Confidence            589999999999752                       0012389999999999999999999999999 7777888899


Q ss_pred             HHhCCCCC
Q 025360          182 LHNQGFVG  189 (254)
Q Consensus       182 L~~~G~~~  189 (254)
                      |+++|++.
T Consensus        58 l~~~g~~~   65 (257)
T TIGR01458        58 LQRLGFDI   65 (257)
T ss_pred             HHHcCCCC
Confidence            99999973

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=98.68  E-value=1.3e-07  Score=84.65  Aligned_cols=61  Identities=21%  Similarity=0.341  Sum_probs=54.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+|||||||++.                           ..++||+.++++.|+++|++++++|||+ ...+.....
T Consensus         2 ~~~~~~D~DGtl~~~---------------------------~~~~~ga~e~l~~L~~~g~~~~~~Tnns-~~~~~~~~~   53 (279)
T TIGR01452         2 AQGFIFDCDGVLWLG---------------------------ERVVPGAPELLDRLARAGKAALFVTNNS-TKSRAEYAL   53 (279)
T ss_pred             ccEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHH
Confidence            468999999999874                           3488999999999999999999999998 777888888


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .|+++|++.
T Consensus        54 ~l~~~G~~~   62 (279)
T TIGR01452        54 KFARLGFNG   62 (279)
T ss_pred             HHHHcCCCC
Confidence            999999974

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>PRK10444 UMP phosphatase; Provisional

Probab=98.67  E-value=1.5e-07  Score=83.09  Aligned_cols=93  Identities=18%  Similarity=0.380  Sum_probs=67.7

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.++||+||||++.                           ..++|++.++++.|+++|.+++|+|||+ ...+....+.
T Consensus         2 ~~v~~DlDGtL~~~---------------------------~~~~p~a~~~l~~L~~~g~~~~~~Tn~~-~~~~~~~~~~   53 (248)
T PRK10444          2 KNVICDIDGVLMHD---------------------------NVAVPGAAEFLHRILDKGLPLVLLTNYP-SQTGQDLANR   53 (248)
T ss_pred             cEEEEeCCCceEeC---------------------------CeeCccHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHHH
Confidence            58999999999975                           2579999999999999999999999999 8778888999


Q ss_pred             HHhCCCCCCCcEEEecCCC------CCCCCcccH---HHHHHHHHHcCCc
Q 025360          182 LHNQGFVGYERLIMRTAAD------KGKNAVTYK---SEIRKQLLEEGYR  222 (254)
Q Consensus       182 L~~~G~~~~~~lilr~~~~------~~kp~~~yK---~~~r~~l~~~Gy~  222 (254)
                      |++.|++.-.+.++++...      +......|.   ..+.+.+.+.|++
T Consensus        54 l~~~G~~~~~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~~l~~~g~~  103 (248)
T PRK10444         54 FATAGVDVPDSVFYTSAMATADFLRRQEGKKAYVIGEGALIHELYKAGFT  103 (248)
T ss_pred             HHHcCCCCCHhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHHHHHHCcCE
Confidence            9999996323334443210      000111222   4566677776765

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=98.65  E-value=7.6e-08  Score=85.75  Aligned_cols=98  Identities=21%  Similarity=0.338  Sum_probs=71.7

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      +..++++||+||||.+.                           ..++||+.++++.|+++|.+++|+||++ ...++..
T Consensus         6 ~~y~~~l~DlDGvl~~G---------------------------~~~ipga~e~l~~L~~~g~~~iflTNn~-~~s~~~~   57 (269)
T COG0647           6 DKYDGFLFDLDGVLYRG---------------------------NEAIPGAAEALKRLKAAGKPVIFLTNNS-TRSREVV   57 (269)
T ss_pred             hhcCEEEEcCcCceEeC---------------------------CccCchHHHHHHHHHHcCCeEEEEeCCC-CCCHHHH
Confidence            45789999999999863                           5699999999999999999999999999 8889988


Q ss_pred             HHHHHh-CCCCCCCcEEEecCC-C-----C-CCCCcccH---HHHHHHHHHcCCcEE
Q 025360          179 RDNLHN-QGFVGYERLIMRTAA-D-----K-GKNAVTYK---SEIRKQLLEEGYRIW  224 (254)
Q Consensus       179 ~~~L~~-~G~~~~~~lilr~~~-~-----~-~kp~~~yK---~~~r~~l~~~Gy~i~  224 (254)
                      .+.|.. .|.+...+-++++.. .     + .++..+|.   ..++..++..|+.++
T Consensus        58 ~~~L~~~~~~~~~~~~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~  114 (269)
T COG0647          58 AARLSSLGGVDVTPDDIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELV  114 (269)
T ss_pred             HHHHHhhcCCCCCHHHeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEe
Confidence            888988 555443333444321 1     1 11123333   567778888887553

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=98.64  E-value=5.2e-07  Score=78.96  Aligned_cols=132  Identities=20%  Similarity=0.267  Sum_probs=86.8

Q ss_pred             eEEEecCCccccch-hhhhhhccCCCC--------CChHHHHHHHHh-------------------CCCCCchHHHHHHH
Q 025360          103 AWILDVDDTCISNV-YYYKGKRYGCDP--------YDPAGFRAWALK-------------------GGCPAIPGVLVLFN  154 (254)
Q Consensus       103 avIfDIDgTll~~~-~~~~~~~~g~~~--------~~~~~~~~~~~~-------------------~~~~~~pg~~ell~  154 (254)
                      -++||.|+||++-. ..+.-..++.+.        +....|.+++..                   ...|..||+.++++
T Consensus         2 LvvfDFD~TIvd~dsd~~v~~~l~~~~~~~~l~~~~~~~~wt~~m~~vl~~L~~~gvt~~~I~~~l~~ip~~pgm~~~l~   81 (234)
T PF06888_consen    2 LVVFDFDHTIVDQDSDDWVIELLPPEELPEELRESYPKGGWTEYMDRVLQLLHEQGVTPEDIRDALRSIPIDPGMKELLR   81 (234)
T ss_pred             EEEEeCCCCccCCccHHHHHHhcCCcccHHHHHHhccccchHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCccHHHHHH
Confidence            48999999999732 222222233221        122234444331                   36789999999999


Q ss_pred             HH--HHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--------------CC---CCCCcccHHHHHHH
Q 025360          155 KL--IESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--------------DK---GKNAVTYKSEIRKQ  215 (254)
Q Consensus       155 ~L--~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--------------~~---~kp~~~yK~~~r~~  215 (254)
                      .+  ++.|+.++++|.-.    .-..+.+|+++|+...+.-+.+...              .+   ..|.-.-|..+.+.
T Consensus        82 ~l~~~~~~~~~~IiSDaN----s~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~h~C~~C~~NmCK~~il~~  157 (234)
T PF06888_consen   82 FLAKNQRGFDLIIISDAN----SFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHSHGCSLCPPNMCKGKILER  157 (234)
T ss_pred             HHHhcCCCceEEEEeCCc----HhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccCCCCCcCCCccchHHHHHH
Confidence            99  45899999999988    6788899999999865433333321              11   12222456666666


Q ss_pred             HHHc----C--CcEEEEEcCCcccccccc
Q 025360          216 LLEE----G--YRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       216 l~~~----G--y~i~~~IGDq~sDi~ga~  238 (254)
                      +.+.    |  |+.++||||.-+|+=.+.
T Consensus       158 ~~~~~~~~g~~~~rviYiGDG~nD~Cp~~  186 (234)
T PF06888_consen  158 LLQEQAQRGVPYDRVIYIGDGRNDFCPAL  186 (234)
T ss_pred             HHHHHhhcCCCcceEEEECCCCCCcCccc
Confidence            6543    4  788999999999996654

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=98.64  E-value=4.7e-07  Score=76.29  Aligned_cols=139  Identities=20%  Similarity=0.240  Sum_probs=89.9

Q ss_pred             CceEEEecCCccccchh--hhhhh-c------------cCC-CCC-------------ChHHHHHHHHhCCCCCchHHHH
Q 025360          101 MDAWILDVDDTCISNVY--YYKGK-R------------YGC-DPY-------------DPAGFRAWALKGGCPAIPGVLV  151 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~--~~~~~-~------------~g~-~~~-------------~~~~~~~~~~~~~~~~~pg~~e  151 (254)
                      .++|+||+|-|++.-+-  ..+.. +            -|+ .+|             .......++...+....||+.+
T Consensus        16 ~~aVcFDvDSTvi~eEgIdelA~~~G~~~~Va~~T~rAMng~~~F~eaL~~Rl~llqp~~~qv~~~v~~~k~~lT~Gi~e   95 (227)
T KOG1615|consen   16 ADAVCFDVDSTVIQEEGIDELAAYCGVGEAVAEVTRRAMNGEADFQEALAARLSLLQPLQVQVEQFVIKQKPTLTPGIRE   95 (227)
T ss_pred             cCeEEEecCcchhHHhhHHHHHHHhCchHHHHHHHHHHhCCCCcHHHHHHHHHHHhcccHHHHHHHHhcCCCccCCCHHH
Confidence            67999999999997541  11110 0            122 233             2344556666677889999999


Q ss_pred             HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC---CC-cEEEecCC-------CCCCCCcccHHHHHHHHHH-c
Q 025360          152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG---YE-RLIMRTAA-------DKGKNAVTYKSEIRKQLLE-E  219 (254)
Q Consensus       152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~---~~-~lilr~~~-------~~~kp~~~yK~~~r~~l~~-~  219 (254)
                      |.+.|+++|.+++++||--    |....-.-.++|++.   |. .+.+..++       ..+..+.--|.+....+.+ .
T Consensus        96 Lv~~L~~~~~~v~liSGGF----~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsdsggKa~~i~~lrk~~  171 (227)
T KOG1615|consen   96 LVSRLHARGTQVYLISGGF----RQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSDSGGKAEVIALLRKNY  171 (227)
T ss_pred             HHHHHHHcCCeEEEEcCCh----HHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCccccCCccHHHHHHHHhCC
Confidence            9999999999999999998    666666667789983   22 22222221       1111122445555555554 3


Q ss_pred             CCcEEEEEcCCcccccccccCCcE
Q 025360          220 GYRIWGNIGDQWSDLQGECTGNRT  243 (254)
Q Consensus       220 Gy~i~~~IGDq~sDi~ga~~g~r~  243 (254)
                      .|..+.+|||..+|+.+-.-|.-.
T Consensus       172 ~~~~~~mvGDGatDlea~~pa~af  195 (227)
T KOG1615|consen  172 NYKTIVMVGDGATDLEAMPPADAF  195 (227)
T ss_pred             ChheeEEecCCccccccCCchhhh
Confidence            345689999999999987744333

>KOG3085 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=98.64  E-value=9.4e-08  Score=83.48  Aligned_cols=100  Identities=19%  Similarity=0.237  Sum_probs=76.3

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcE-EEecCCCCCCCCc-ccHHHHHHHHHHcC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERL-IMRTAADKGKNAV-TYKSEIRKQLLEEG  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~l-ilr~~~~~~kp~~-~yK~~~r~~l~~~G  220 (254)
                      -...+++.++++.|+++|..+.++||-+ ...+    ..|...|+..|++. +.+....-.||++ +|..    +++..|
T Consensus       112 ~~~~~~~~~~lq~lR~~g~~l~iisN~d-~r~~----~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~----al~~l~  182 (237)
T KOG3085|consen  112 WKYLDGMQELLQKLRKKGTILGIISNFD-DRLR----LLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQL----ALERLG  182 (237)
T ss_pred             ceeccHHHHHHHHHHhCCeEEEEecCCc-HHHH----HHhhccCHHHhhhhhhhhhhhccCCCChHHHHH----HHHHhC
Confidence            3567899999999999999999999998 5433    56777888766554 4444445667876 5554    355555


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEeCCCCC
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPNPMY  251 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp~y  251 (254)
                      ..  .|+.|||.. +|++||+ +|.+++.+=|.++
T Consensus       183 v~Pee~vhIgD~l~nD~~gA~~~G~~ailv~~~~~  217 (237)
T KOG3085|consen  183 VKPEECVHIGDLLENDYEGARNLGWHAILVDNSIT  217 (237)
T ss_pred             CChHHeEEecCccccccHhHHHcCCEEEEEccccc
Confidence            44  599999988 6999998 8999999988765

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=98.61  E-value=3.5e-07  Score=79.42  Aligned_cols=106  Identities=15%  Similarity=0.073  Sum_probs=74.3

Q ss_pred             HHHHHHhC--CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC---CCCCCCcEEEecCCCCCCCCccc
Q 025360          134 FRAWALKG--GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ---GFVGYERLIMRTAADKGKNAVTY  208 (254)
Q Consensus       134 ~~~~~~~~--~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~---G~~~~~~lilr~~~~~~kp~~~y  208 (254)
                      |.+....+  ..+++||+.++|+.|+++|++++++||.+    +..+...+...   ++..|++.++.. ...+||.+  
T Consensus        83 w~~~Y~~~~~~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s----~~~~~~~~~~~~~~~L~~~f~~~fd~-~~g~KP~p--  155 (220)
T TIGR01691        83 WRQGYESGELTSHLYPDVPPALEAWLQLGLRLAVYSSGS----VPAQKLLFGHSDAGNLTPYFSGYFDT-TVGLKTEA--  155 (220)
T ss_pred             HHHHHhcCCcccCcCcCHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHhhccccchhhhcceEEEe-CcccCCCH--
Confidence            44444433  45799999999999999999999999999    66666666654   454444444432 22345544  


Q ss_pred             HHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          209 KSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       209 K~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                       ...+..+++.|..  .+++|||+..|+.+|+ +|++++.+-
T Consensus       156 -~~y~~i~~~lgv~p~e~lfVgDs~~Di~AA~~AG~~ti~v~  196 (220)
T TIGR01691       156 -QSYVKIAGQLGSPPREILFLSDIINELDAARKAGLHTGQLV  196 (220)
T ss_pred             -HHHHHHHHHhCcChhHEEEEeCCHHHHHHHHHcCCEEEEEE
Confidence             2333345555654  4999999999999998 899988773

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=98.57  E-value=1.1e-07  Score=77.46  Aligned_cols=105  Identities=25%  Similarity=0.345  Sum_probs=71.1

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+-+|||+||||.|..-||..++---..|+              ...|.  -++.|.+.|++++++|||.    -...+.
T Consensus         8 IkLli~DVDGvLTDG~ly~~~~Gee~KaFn--------------v~DG~--Gik~l~~~Gi~vAIITGr~----s~ive~   67 (170)
T COG1778           8 IKLLILDVDGVLTDGKLYYDENGEEIKAFN--------------VRDGH--GIKLLLKSGIKVAIITGRD----SPIVEK   67 (170)
T ss_pred             ceEEEEeccceeecCeEEEcCCCceeeeee--------------ccCcH--HHHHHHHcCCeEEEEeCCC----CHHHHH
Confidence            567999999999998877765432112232              12221  3677889999999999999    677888


Q ss_pred             HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHH-HH--cCCcEEEEEcCCccccccc
Q 025360          181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQL-LE--EGYRIWGNIGDQWSDLQGE  237 (254)
Q Consensus       181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l-~~--~Gy~i~~~IGDq~sDi~ga  237 (254)
                      ..+++|+..   ++.... +        |....++| .+  .++..+++|||.++|+-.-
T Consensus        68 Ra~~LGI~~---~~qG~~-d--------K~~a~~~L~~~~~l~~e~~ayiGDD~~Dlpvm  115 (170)
T COG1778          68 RAKDLGIKH---LYQGIS-D--------KLAAFEELLKKLNLDPEEVAYVGDDLVDLPVM  115 (170)
T ss_pred             HHHHcCCce---eeechH-h--------HHHHHHHHHHHhCCCHHHhhhhcCccccHHHH
Confidence            999999973   343322 1        22222233 22  4456799999999998543

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=98.50  E-value=3.1e-07  Score=80.94  Aligned_cols=61  Identities=15%  Similarity=0.243  Sum_probs=52.0

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.++||+||||++.                           ..++|++.++++.|+++|.+++|+||++ .+.++...+.
T Consensus         2 ~~~~~D~DGtl~~~---------------------------~~~i~~a~~~l~~l~~~g~~~~~~Tnn~-~r~~~~~~~~   53 (249)
T TIGR01457         2 KGYLIDLDGTMYKG---------------------------KERIPEAETFVHELQKRDIPYLFVTNNS-TRTPESVAEM   53 (249)
T ss_pred             CEEEEeCCCceEcC---------------------------CeeCcCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHHH
Confidence            57999999999975                           2367899999999999999999999855 5557888889


Q ss_pred             HHhCCCCCC
Q 025360          182 LHNQGFVGY  190 (254)
Q Consensus       182 L~~~G~~~~  190 (254)
                      |++.|++.-
T Consensus        54 l~~~g~~~~   62 (249)
T TIGR01457        54 LASFDIPAT   62 (249)
T ss_pred             HHHcCCCCC
Confidence            999999753

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=98.48  E-value=4.5e-07  Score=78.02  Aligned_cols=59  Identities=24%  Similarity=0.204  Sum_probs=47.6

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.++||+||||++..                          ...-|.+.+.+++|+++|++++++|||+    ......
T Consensus         3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~~   52 (230)
T PRK01158          3 IKAIAIDIDGTITDKD--------------------------RRLSLKAVEAIRKAEKLGIPVILATGNV----LCFARA   52 (230)
T ss_pred             eeEEEEecCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCc----hHHHHH
Confidence            4689999999999752                          2355788899999999999999999999    555556


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .+..+|++.
T Consensus        53 ~~~~l~~~~   61 (230)
T PRK01158         53 AAKLIGTSG   61 (230)
T ss_pred             HHHHhCCCC
Confidence            667777764

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=98.47  E-value=4.7e-07  Score=79.75  Aligned_cols=59  Identities=25%  Similarity=0.314  Sum_probs=49.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+|||||||+++.                          ....|...+.+++|+++|++++++|||+    ...+..
T Consensus         3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~~~~~G~~~~iaTGR~----~~~~~~   52 (272)
T PRK10530          3 YRVIALDLDGTLLTPK--------------------------KTILPESLEALARAREAGYKVIIVTGRH----HVAIHP   52 (272)
T ss_pred             ccEEEEeCCCceECCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCC----hHHHHH
Confidence            5789999999999762                          2356678899999999999999999999    566677


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++++|+..
T Consensus        53 ~~~~l~~~~   61 (272)
T PRK10530         53 FYQALALDT   61 (272)
T ss_pred             HHHhcCCCC
Confidence            788888864

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=98.47  E-value=7e-07  Score=78.85  Aligned_cols=59  Identities=20%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|++||||||++..                          ...-+...+.+++|+++|++++++|||+    ...+..
T Consensus         3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~----~~~~~~   52 (270)
T PRK10513          3 IKLIAIDMDGTLLLPD--------------------------HTISPAVKQAIAAARAKGVNVVLTTGRP----YAGVHR   52 (270)
T ss_pred             eEEEEEecCCcCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEecCCC----hHHHHH
Confidence            5789999999999752                          2355778999999999999999999999    666677


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++++|+..
T Consensus        53 ~~~~l~~~~   61 (270)
T PRK10513         53 YLKELHMEQ   61 (270)
T ss_pred             HHHHhCCCC
Confidence            788888753

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=98.46  E-value=5.2e-07  Score=79.96  Aligned_cols=60  Identities=18%  Similarity=0.153  Sum_probs=50.4

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.++|||||||++..                          ...-+...+.+++|+++|++++++|||+    ......
T Consensus         2 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~ai~~l~~~G~~~~iaTGR~----~~~~~~   51 (272)
T PRK15126          2 ARLAAFDMDGTLLMPD--------------------------HHLGEKTLSTLARLRERDITLTFATGRH----VLEMQH   51 (272)
T ss_pred             ccEEEEeCCCcCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCC----HHHHHH
Confidence            4689999999999752                          2466778999999999999999999999    667777


Q ss_pred             HHHhCCCCCC
Q 025360          181 NLHNQGFVGY  190 (254)
Q Consensus       181 ~L~~~G~~~~  190 (254)
                      .++++|+..+
T Consensus        52 ~~~~l~~~~~   61 (272)
T PRK15126         52 ILGALSLDAY   61 (272)
T ss_pred             HHHHcCCCCc
Confidence            8888888743

>PRK10976 putative hydrolase; Provisional

Probab=98.45  E-value=5.4e-07  Score=79.44  Aligned_cols=59  Identities=19%  Similarity=0.155  Sum_probs=48.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      ++.|++||||||++..                          ...-+...+.+++|+++|++++++|||+    ......
T Consensus         2 ikli~~DlDGTLl~~~--------------------------~~is~~~~~ai~~l~~~G~~~~iaTGR~----~~~~~~   51 (266)
T PRK10976          2 YQVVASDLDGTLLSPD--------------------------HTLSPYAKETLKLLTARGIHFVFATGRH----HVDVGQ   51 (266)
T ss_pred             ceEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC----hHHHHH
Confidence            4689999999999762                          2355778999999999999999999999    566667


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++.+|++.
T Consensus        52 ~~~~l~~~~   60 (266)
T PRK10976         52 IRDNLEIKS   60 (266)
T ss_pred             HHHhcCCCC
Confidence            778888864

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=98.45  E-value=6e-07  Score=74.64  Aligned_cols=85  Identities=25%  Similarity=0.321  Sum_probs=57.7

Q ss_pred             hHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCC------CCC-ccc--HHHHHHHH-
Q 025360          147 PGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKG------KNA-VTY--KSEIRKQL-  216 (254)
Q Consensus       147 pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~------kp~-~~y--K~~~r~~l-  216 (254)
                      |++.++++.+++.|++++++|+.+    +..++..++..|++.. .++.....+..      +-. ...  |....+.+ 
T Consensus        92 ~~~~e~i~~~~~~~~~v~IvS~~~----~~~i~~~~~~~~i~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~  166 (192)
T PF12710_consen   92 PDAMELIRELKDNGIKVVIVSGSP----DEIIEPIAERLGIDDD-NVIGNELFDNGGGIFTGRITGSNCGGKAEALKELY  166 (192)
T ss_dssp             TTHHHHHHHHHHTTSEEEEEEEEE----HHHHHHHHHHTTSSEG-GEEEEEEECTTCCEEEEEEEEEEESHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHCCCEEEEECCCc----HHHHHHHHHHcCCCce-EEEEEeeeecccceeeeeECCCCCCcHHHHHHHHH
Confidence            555599999999999999999999    7888888889999852 22222211110      000 012  55555555 


Q ss_pred             --H--HcCCcEEEEEcCCcccccc
Q 025360          217 --L--EEGYRIWGNIGDQWSDLQG  236 (254)
Q Consensus       217 --~--~~Gy~i~~~IGDq~sDi~g  236 (254)
                        .  ..+...+++|||+.+|+..
T Consensus       167 ~~~~~~~~~~~~~~iGDs~~D~~~  190 (192)
T PF12710_consen  167 IRDEEDIDPDRVIAIGDSINDLPM  190 (192)
T ss_dssp             HHHHHTHTCCEEEEEESSGGGHHH
T ss_pred             HHhhcCCCCCeEEEEECCHHHHHH
Confidence              1  2457789999999999864

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=98.44  E-value=4.8e-06  Score=74.54  Aligned_cols=103  Identities=17%  Similarity=0.134  Sum_probs=70.3

Q ss_pred             HHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEE------EecCC-CCCCC
Q 025360          132 AGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLI------MRTAA-DKGKN  204 (254)
Q Consensus       132 ~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~li------lr~~~-~~~kp  204 (254)
                      +...+.+.....++.||+.+|++.|+++|++++++|+..    +...+..|+++|+...+..+      +..++ ..+++
T Consensus       109 e~i~~~v~~~~l~l~pG~~efl~~L~~~GIpv~IvS~G~----~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~  184 (277)
T TIGR01544       109 AKIKEIVAESDVMLKDGYENFFDKLQQHSIPVFIFSAGI----GNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFK  184 (277)
T ss_pred             HHHHHHHhhcCCccCcCHHHHHHHHHHCCCcEEEEeCCc----HHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCC
Confidence            333444444578999999999999999999999999999    78888899999985333222      33333 33444


Q ss_pred             Cc----ccHHH-HHH-HHHH----cCCcEEEEEcCCcccccccc
Q 025360          205 AV----TYKSE-IRK-QLLE----EGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       205 ~~----~yK~~-~r~-~l~~----~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+    ..|.. .+. ..+.    ....-+++|||+.+|+..+.
T Consensus       185 ~P~i~~~~K~~~v~~~~~~~~~~~~~~~~vI~vGDs~~Dl~ma~  228 (277)
T TIGR01544       185 GPLIHTFNKNHDVALRNTEYFNQLKDRSNIILLGDSQGDLRMAD  228 (277)
T ss_pred             CCcccccccHHHHHHHHHHHhCccCCcceEEEECcChhhhhHhc
Confidence            33    22322 221 1222    23456999999999999987

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.44  E-value=6.3e-07  Score=79.75  Aligned_cols=60  Identities=17%  Similarity=0.096  Sum_probs=50.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|++||||||++..                          ....+++.+.++.|+++|++++++|||+    ......
T Consensus         4 ~kli~~DlDGTLl~~~--------------------------~~~~~~~~~ai~~l~~~Gi~~~iaTgR~----~~~~~~   53 (273)
T PRK00192          4 KLLVFTDLDGTLLDHH--------------------------TYSYEPAKPALKALKEKGIPVIPCTSKT----AAEVEV   53 (273)
T ss_pred             ceEEEEcCcccCcCCC--------------------------CcCcHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHH
Confidence            5689999999999752                          2355789999999999999999999999    677778


Q ss_pred             HHHhCCCCCC
Q 025360          181 NLHNQGFVGY  190 (254)
Q Consensus       181 ~L~~~G~~~~  190 (254)
                      .++++|+..+
T Consensus        54 ~~~~l~l~~~   63 (273)
T PRK00192         54 LRKELGLEDP   63 (273)
T ss_pred             HHHHcCCCCC
Confidence            8888998754

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=98.41  E-value=8.2e-07  Score=76.02  Aligned_cols=57  Identities=21%  Similarity=0.136  Sum_probs=45.6

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.|++||||||+++.                          ...-|.+.+.+++|+++|++++++|||+    .......
T Consensus         2 k~v~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~g~~~~~~TGR~----~~~~~~~   51 (215)
T TIGR01487         2 KLVAIDIDGTLTEPN--------------------------RMISERAIEAIRKAEKKGIPVSLVTGNT----VPFARAL   51 (215)
T ss_pred             cEEEEecCCCcCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCc----chhHHHH
Confidence            579999999999752                          3356788999999999999999999999    4445555


Q ss_pred             HHhCCCC
Q 025360          182 LHNQGFV  188 (254)
Q Consensus       182 L~~~G~~  188 (254)
                      ++.+++.
T Consensus        52 ~~~l~~~   58 (215)
T TIGR01487        52 AVLIGTS   58 (215)
T ss_pred             HHHhCCC
Confidence            5666665

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=98.38  E-value=1.1e-06  Score=76.47  Aligned_cols=55  Identities=13%  Similarity=0.122  Sum_probs=46.7

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      |+|||||||++..                           ...+++.+.+++|+++|++++++|||+    +......++
T Consensus         2 i~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~G~~~vi~TgR~----~~~~~~~~~   50 (225)
T TIGR02461         2 IFTDLDGTLLPPG---------------------------YEPGPAREALEELKDLGFPIVFVSSKT----RAEQEYYRE   50 (225)
T ss_pred             EEEeCCCCCcCCC---------------------------CCchHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHH
Confidence            7899999999841                           135678999999999999999999999    677777888


Q ss_pred             hCCCCC
Q 025360          184 NQGFVG  189 (254)
Q Consensus       184 ~~G~~~  189 (254)
                      ++|+..
T Consensus        51 ~lg~~~   56 (225)
T TIGR02461        51 ELGVEP   56 (225)
T ss_pred             HcCCCC
Confidence            999854

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=98.38  E-value=1.1e-06  Score=75.42  Aligned_cols=55  Identities=20%  Similarity=0.225  Sum_probs=46.4

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      |++|||||||++.                          ....+.+.+.++.|+++|++++++|||+    ...+...++
T Consensus         2 i~~DlDGTLL~~~--------------------------~~~~~~~~~~l~~l~~~gi~~~i~TgR~----~~~~~~~~~   51 (221)
T TIGR02463         2 VFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLQEAGIPVILCTSKT----AAEVEYLQK   51 (221)
T ss_pred             EEEeCCCCCcCCC--------------------------CCCcHHHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHH
Confidence            7899999999752                          2245558899999999999999999999    777788888


Q ss_pred             hCCCC
Q 025360          184 NQGFV  188 (254)
Q Consensus       184 ~~G~~  188 (254)
                      .+|+.
T Consensus        52 ~l~~~   56 (221)
T TIGR02463        52 ALGLT   56 (221)
T ss_pred             HcCCC
Confidence            88876

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=98.38  E-value=6.3e-06  Score=70.94  Aligned_cols=103  Identities=17%  Similarity=0.122  Sum_probs=65.1

Q ss_pred             CCCchHHHHHHH-HHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--CCCC--CCcccHHHHHHHHH
Q 025360          143 CPAIPGVLVLFN-KLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--DKGK--NAVTYKSEIRKQLL  217 (254)
Q Consensus       143 ~~~~pg~~ell~-~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--~~~k--p~~~yK~~~r~~l~  217 (254)
                      ..++|++.++++ .++++|++++++||++    +..++...+..|+-+-++++-+.-.  +.++  ....+.++....++
T Consensus        93 ~~l~pga~e~L~~~l~~~G~~v~IvSas~----~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~Kv~rl~  168 (210)
T TIGR01545        93 VTAFPLVAERLRQYLESSDADIWLITGSP----QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHEKVAQLE  168 (210)
T ss_pred             CCCCccHHHHHHHHHHhCCCEEEEEcCCc----HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChHHHHHHH
Confidence            367999999996 7888999999999999    6667777777555322344432211  1121  11233344444444


Q ss_pred             H---cCCcEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          218 E---EGYRIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       218 ~---~Gy~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      +   ..+..+...||+.+|+.=-. ++..+..=|++
T Consensus       169 ~~~~~~~~~~~aYsDS~~D~pmL~~a~~~~~Vnp~~  204 (210)
T TIGR01545       169 QKIGSPLKLYSGYSDSKQDNPLLAFCEHRWRVSKRG  204 (210)
T ss_pred             HHhCCChhheEEecCCcccHHHHHhCCCcEEECcch
Confidence            2   25567778999999996543 56556555665

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=98.37  E-value=8.4e-07  Score=75.99  Aligned_cols=55  Identities=25%  Similarity=0.196  Sum_probs=43.5

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      |+|||||||+++.                          ...-+.+.+.+++|+++|++++++|||+    .......++
T Consensus         1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~~aTGR~----~~~~~~~~~   50 (225)
T TIGR01482         1 IASDIDGTLTDPN--------------------------RAINESALEAIRKAESVGIPVVLVTGNS----VQFARALAK   50 (225)
T ss_pred             CeEeccCccCCCC--------------------------cccCHHHHHHHHHHHHCCCEEEEEcCCc----hHHHHHHHH
Confidence            5899999999863                          2345677889999999999999999999    555555666


Q ss_pred             hCCCC
Q 025360          184 NQGFV  188 (254)
Q Consensus       184 ~~G~~  188 (254)
                      .+|++
T Consensus        51 ~l~~~   55 (225)
T TIGR01482        51 LIGTP   55 (225)
T ss_pred             HhCCC
Confidence            67754

catalyze the same reaction as SPP.

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=98.36  E-value=1.4e-06  Score=71.95  Aligned_cols=124  Identities=13%  Similarity=0.061  Sum_probs=74.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCC-hHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYD-PAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ++.+|+|+||||+.+...-...  . ..|. .-..+.-...--...-||+.++|+.|.+. ++|++.|+.+    +....
T Consensus         1 k~~lvlDLDeTLi~~~~~~~~~--~-~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~----~~yA~   72 (162)
T TIGR02251         1 KKTLVLDLDETLVHSTFKMPKV--D-ADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASL----EEYAD   72 (162)
T ss_pred             CcEEEEcCCCCcCCCCCCCCCC--C-CceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCc----HHHHH
Confidence            4689999999999764221110  0 0000 00000000000235779999999999988 9999999999    56666


Q ss_pred             HHHHhCCCCC-CCc-EEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc
Q 025360          180 DNLHNQGFVG-YER-LIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC  238 (254)
Q Consensus       180 ~~L~~~G~~~-~~~-lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~  238 (254)
                      ..|..++... +++ .+.|......++.  |.    +.|...|..  -+++|||+..|+.++.
T Consensus        73 ~il~~ldp~~~~f~~~l~r~~~~~~~~~--~~----K~L~~l~~~~~~vIiVDD~~~~~~~~~  129 (162)
T TIGR02251        73 PVLDILDRGGKVISRRLYRESCVFTNGK--YV----KDLSLVGKDLSKVIIIDNSPYSYSLQP  129 (162)
T ss_pred             HHHHHHCcCCCEEeEEEEccccEEeCCC--EE----eEchhcCCChhhEEEEeCChhhhccCc
Confidence            6777777654 443 3444332222221  21    234545543  5999999999999876

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=98.35  E-value=1.2e-06  Score=75.03  Aligned_cols=56  Identities=23%  Similarity=0.356  Sum_probs=48.4

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      |++||||||++..                          ...-|.+.+.++.|+++|++++++|||+    .......+.
T Consensus         1 i~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~g~~~~i~TGR~----~~~~~~~~~   50 (254)
T PF08282_consen    1 IFSDLDGTLLNSD--------------------------GKISPETIEALKELQEKGIKLVIATGRS----YSSIKRLLK   50 (254)
T ss_dssp             EEEECCTTTCSTT--------------------------SSSCHHHHHHHHHHHHTTCEEEEECSST----HHHHHHHHH
T ss_pred             cEEEECCceecCC--------------------------CeeCHHHHHHHHhhcccceEEEEEccCc----ccccccccc
Confidence            6899999999852                          2266899999999999999999999999    777888888


Q ss_pred             hCCCCC
Q 025360          184 NQGFVG  189 (254)
Q Consensus       184 ~~G~~~  189 (254)
                      ..++..
T Consensus        51 ~~~~~~   56 (254)
T PF08282_consen   51 ELGIDD   56 (254)
T ss_dssp             HTTHCS
T ss_pred             cccchh
Confidence            888873

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=98.35  E-value=1.3e-06  Score=76.98  Aligned_cols=59  Identities=27%  Similarity=0.351  Sum_probs=51.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+|||||||++..                          ...-+.+.+.+++++++|++++++|||+    ......
T Consensus         3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~~~~~g~~v~iaTGR~----~~~~~~   52 (264)
T COG0561           3 IKLLAFDLDGTLLDSN--------------------------KTISPETKEALARLREKGVKVVLATGRP----LPDVLS   52 (264)
T ss_pred             eeEEEEcCCCCccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC----hHHHHH
Confidence            5789999999999863                          3377888999999999999999999999    677778


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++.+|+..
T Consensus        53 ~~~~l~~~~   61 (264)
T COG0561          53 ILEELGLDG   61 (264)
T ss_pred             HHHHcCCCc
Confidence            888888875

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.34  E-value=1.5e-06  Score=77.23  Aligned_cols=59  Identities=15%  Similarity=0.110  Sum_probs=48.8

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      .++.|++||||||++..                          ....+.+.+.+++|+++|++++++|||+    .....
T Consensus         6 ~~~lI~~DlDGTLL~~~--------------------------~~i~~~~~~ai~~l~~~Gi~~viaTGR~----~~~i~   55 (271)
T PRK03669          6 DPLLIFTDLDGTLLDSH--------------------------TYDWQPAAPWLTRLREAQVPVILCSSKT----AAEML   55 (271)
T ss_pred             CCeEEEEeCccCCcCCC--------------------------CcCcHHHHHHHHHHHHcCCeEEEEcCCC----HHHHH
Confidence            47889999999999752                          2244668899999999999999999999    66677


Q ss_pred             HHHHhCCCC
Q 025360          180 DNLHNQGFV  188 (254)
Q Consensus       180 ~~L~~~G~~  188 (254)
                      ..++++|++
T Consensus        56 ~~~~~l~~~   64 (271)
T PRK03669         56 PLQQTLGLQ   64 (271)
T ss_pred             HHHHHhCCC
Confidence            778888885

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=98.32  E-value=1.7e-06  Score=77.80  Aligned_cols=59  Identities=8%  Similarity=0.024  Sum_probs=49.1

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      ++.|++|||||||+..                          ....+.+.+.+++|+++|+.|+++|||+    ......
T Consensus         1 ~KLIftDLDGTLLd~~--------------------------~~~~~~a~~aL~~Lk~~GI~vVlaTGRt----~~ev~~   50 (302)
T PRK12702          1 MRLVLSSLDGSLLDLE--------------------------FNSYGAARQALAALERRSIPLVLYSLRT----RAQLEH   50 (302)
T ss_pred             CcEEEEeCCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHH
Confidence            4678999999999863                          2234567899999999999999999999    777777


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++++|+..
T Consensus        51 l~~~Lgl~~   59 (302)
T PRK12702         51 LCRQLRLEH   59 (302)
T ss_pred             HHHHhCCCC
Confidence            888888874

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=98.32  E-value=1.9e-06  Score=75.58  Aligned_cols=56  Identities=29%  Similarity=0.412  Sum_probs=47.0

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      ++|||||||++..                          ...-+.+.+.+++|+++|++++++|||+    .......++
T Consensus         2 i~~DlDGTLl~~~--------------------------~~i~~~~~~~i~~l~~~G~~~~iaTGR~----~~~~~~~~~   51 (256)
T TIGR00099         2 IFIDLDGTLLNDD--------------------------HTISPSTKEALAKLREKGIKVVLATGRP----YKEVKNILK   51 (256)
T ss_pred             EEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHH
Confidence            7899999999852                          2355778999999999999999999999    666777888


Q ss_pred             hCCCCC
Q 025360          184 NQGFVG  189 (254)
Q Consensus       184 ~~G~~~  189 (254)
                      ++|+..
T Consensus        52 ~~~~~~   57 (256)
T TIGR00099        52 ELGLDT   57 (256)
T ss_pred             HcCCCC
Confidence            888863

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=98.30  E-value=1.9e-06  Score=75.76  Aligned_cols=56  Identities=18%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      |++||||||++..                          ...++.+.+.++.|+++|++++++|||+    .......++
T Consensus         2 i~~DlDGTll~~~--------------------------~~~~~~~~~~i~~l~~~g~~~~~~TgR~----~~~~~~~~~   51 (256)
T TIGR01486         2 IFTDLDGTLLDPH--------------------------GYDWGPAKEVLERLQELGIPVIPCTSKT----AAEVEYLRK   51 (256)
T ss_pred             EEEcCCCCCcCCC--------------------------CcCchHHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHH
Confidence            7899999999763                          1134568999999999999999999999    777788899


Q ss_pred             hCCCCC
Q 025360          184 NQGFVG  189 (254)
Q Consensus       184 ~~G~~~  189 (254)
                      ++|++.
T Consensus        52 ~~~~~~   57 (256)
T TIGR01486        52 ELGLED   57 (256)
T ss_pred             HcCCCC
Confidence            999864

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=98.26  E-value=1e-06  Score=72.69  Aligned_cols=111  Identities=18%  Similarity=0.212  Sum_probs=63.7

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCc-hHHHHHHHHHHHCCCeEEEEeCCCcc--------
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAI-PGVLVLFNKLIESGLKVILVTGRDEE--------  172 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-pg~~ell~~L~~~G~~i~~vTgR~~e--------  172 (254)
                      +...||+||||+.+..        +..|. ..+++|      ..+ |++.+.|++|.++|++|+++||-.+-        
T Consensus         1 Kia~fD~DgTLi~~~s--------~~~f~-~~~~D~------~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~   65 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKS--------GKKFP-KDPDDW------KFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKD   65 (159)
T ss_dssp             SEEEE-SCTTTEE-ST--------STTS--SSTCGG------EEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCH
T ss_pred             CEEEEeCCCCccCCCC--------CCcCc-CCHHHh------hhcchhHHHHHHHHHhcCCeEEEEeCccccccccccch
Confidence            3578999999998742        11121 011111      233 57999999999999999999997531        


Q ss_pred             --ccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHH-Hc------CCcEEEEEcCCccc
Q 025360          173 --TFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLL-EE------GYRIWGNIGDQWSD  233 (254)
Q Consensus       173 --~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~-~~------Gy~i~~~IGDq~sD  233 (254)
                        ..+......|+.+|++.  .++..... .-+||..    ++...+. ..      ......+|||...+
T Consensus        66 ~~~~~~ki~~il~~l~ip~--~~~~a~~~d~~RKP~~----GM~~~~~~~~~~~~~id~~~Sf~VGDaagr  130 (159)
T PF08645_consen   66 LENFHEKIENILKELGIPI--QVYAAPHKDPCRKPNP----GMWEFALKDYNDGVEIDLANSFYVGDAAGR  130 (159)
T ss_dssp             HHHHHHHHHHHHHHCTS-E--EEEECGCSSTTSTTSS----HHHHHHCCCTSTT--S-CCC-EEEESSCHC
T ss_pred             HHHHHHHHHHHHHHcCCce--EEEecCCCCCCCCCch----hHHHHHHHhccccccccccceEEEeccCCC
Confidence              22345567788899982  44544433 4567643    2222222 21      22358999997443

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>PTZ00174 phosphomannomutase; Provisional

Probab=98.24  E-value=4.3e-06  Score=73.44  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=43.6

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..+.|+||||||||++.                          ...-|...+.+++++++|++++++|||+    .....
T Consensus         4 ~~klia~DlDGTLL~~~--------------------------~~is~~~~~ai~~l~~~Gi~~viaTGR~----~~~i~   53 (247)
T PTZ00174          4 KKTILLFDVDGTLTKPR--------------------------NPITQEMKDTLAKLKSKGFKIGVVGGSD----YPKIK   53 (247)
T ss_pred             CCeEEEEECcCCCcCCC--------------------------CCCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHH
Confidence            46789999999999763                          3355678899999999999999999999    44555


Q ss_pred             HHHH
Q 025360          180 DNLH  183 (254)
Q Consensus       180 ~~L~  183 (254)
                      +.|.
T Consensus        54 ~~l~   57 (247)
T PTZ00174         54 EQLG   57 (247)
T ss_pred             HHHh
Confidence            5554

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=98.22  E-value=2.7e-06  Score=74.35  Aligned_cols=58  Identities=21%  Similarity=0.325  Sum_probs=50.8

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      ++||+||||+++                           ..++|++.+.++.++++|+++.|+||.. .+.+....+.|.
T Consensus         1 ~lfD~DGvL~~~---------------------------~~~~~~a~e~i~~l~~~g~~~~~~tN~~-~~~~~~~~~~l~   52 (236)
T TIGR01460         1 FLFDIDGVLWLG---------------------------HKPIPGAAEALNRLRAKGKPVVFLTNNS-SRSEEDYAEKLS   52 (236)
T ss_pred             CEEeCcCccCcC---------------------------CccCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHHHHH
Confidence            589999999986                           3368899999999999999999999877 666888889999


Q ss_pred             h-CCCCC
Q 025360          184 N-QGFVG  189 (254)
Q Consensus       184 ~-~G~~~  189 (254)
                      + .|++.
T Consensus        53 ~~~g~~~   59 (236)
T TIGR01460        53 SLLGVDV   59 (236)
T ss_pred             HhcCCCC
Confidence            8 78864

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>PTZ00445 p36-lilke protein; Provisional

Probab=98.20  E-value=2e-05  Score=67.67  Aligned_cols=167  Identities=15%  Similarity=0.114  Sum_probs=104.0

Q ss_pred             HHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHH---HhC
Q 025360           65 RYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWA---LKG  141 (254)
Q Consensus        65 ~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~---~~~  141 (254)
                      +.++.|..++++.  ...-.+.|..+++.++.  .|.++|++|+|-||+...      - ||       |.+..   ..-
T Consensus        11 ~~~~~~~~~~~~~--~~~~~~~~~~~v~~L~~--~GIk~Va~D~DnTlI~~H------s-gG-------~~~~~~~~~~~   72 (219)
T PTZ00445         11 DAFKEYIESGLFD--HLNPHESADKFVDLLNE--CGIKVIASDFDLTMITKH------S-GG-------YIDPDNDDIRV   72 (219)
T ss_pred             HHHHHHHHhcccc--cCCHHHHHHHHHHHHHH--cCCeEEEecchhhhhhhh------c-cc-------ccCCCcchhhh
Confidence            4567788888773  45556677777766553  579999999999999731      0 11       11110   001


Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc------------HHHHHHHHHhCCCCC-CCcE-------EEecCC--
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------------GQVTRDNLHNQGFVG-YERL-------IMRTAA--  199 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------------r~~T~~~L~~~G~~~-~~~l-------ilr~~~--  199 (254)
                      ...+-|....++..|++.|++|++||=.+ +..            .+....-|++-+... -..+       .-.+.+  
T Consensus        73 ~~~~tpefk~~~~~l~~~~I~v~VVTfSd-~~~~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~  151 (219)
T PTZ00445         73 LTSVTPDFKILGKRLKNSNIKISVVTFSD-KELIPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYR  151 (219)
T ss_pred             hccCCHHHHHHHHHHHHCCCeEEEEEccc-hhhccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhh
Confidence            23477889999999999999999999887 322            123444555433321 0011       101111  


Q ss_pred             --CCCCCCcccHHH-HHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          200 --DKGKNAVTYKSE-IRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       200 --~~~kp~~~yK~~-~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                        .-.||.+..|+- +...+++.|..  .++.|+|...-+.+|. .|..++-++++.
T Consensus       152 ~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFIDD~~~NVeaA~~lGi~ai~f~~~e  208 (219)
T PTZ00445        152 PLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFIDDDMNNCKNALKEGYIALHVTGNE  208 (219)
T ss_pred             hhcccCCCccchHHHHHHHHHHcCCCHHHeEeecCCHHHHHHHHHCCCEEEEcCChH
Confidence              123566655432 12344555654  5999999999999987 799999988763

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=98.20  E-value=9.9e-06  Score=74.66  Aligned_cols=100  Identities=25%  Similarity=0.289  Sum_probs=71.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC-C-------CCCCCcEEEecCCCC-------------
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ-G-------FVGYERLIMRTAADK-------------  201 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~-G-------~~~~~~lilr~~~~~-------------  201 (254)
                      ..+.||+.++|+.|+++|++++++||.+    +..|...|+.+ |       +..|++.++.+..-+             
T Consensus       183 v~~~pgl~elL~~Lr~~G~klfLvTNS~----~~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~FF~~~~pf~~v~  258 (343)
T TIGR02244       183 VLRDPKLPLFLSKLKEHGKKLFLLTNSD----YDYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPGFFTEGRPFRQVD  258 (343)
T ss_pred             hccchhHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCcccCCCCceEEEe
Confidence            4568999999999999999999999999    88888889886 7       777777777654210             


Q ss_pred             ---C--C--------CCcccHHH---HHHHHHHcCCcEEEEEcCCc-ccccccc--cCCcEEEe
Q 025360          202 ---G--K--------NAVTYKSE---IRKQLLEEGYRIWGNIGDQW-SDLQGEC--TGNRTFKL  246 (254)
Q Consensus       202 ---~--k--------p~~~yK~~---~r~~l~~~Gy~i~~~IGDq~-sDi~ga~--~g~r~fkl  246 (254)
                         +  +        +..+|.-+   ...++....-..+++|||+. +|+.+++  +|.+++.+
T Consensus       259 ~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l~~~~~~vlYvGD~i~~Di~~~kk~~Gw~TvlI  322 (343)
T TIGR02244       259 VETGSLKWGEVDGLEPGKVYSGGSLKQFHELLKWRGKEVLYFGDHIYGDLLRSKKKRGWRTAAI  322 (343)
T ss_pred             CCCCcccCCccccccCCCeEeCCCHHHHHHHHCCCCCcEEEECCcchHHHHhhHHhcCcEEEEE
Confidence               0  0        11133211   11112122235699999999 6999997  89999865

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.18  E-value=2.6e-05  Score=64.16  Aligned_cols=142  Identities=13%  Similarity=0.044  Sum_probs=79.8

Q ss_pred             CCCceEEEecCCccccchhhhhhh-c--cCCCCCChHH---HHHHH---HhCCCCCchHHHHHHHHHHHCCCeEEEEeCC
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGK-R--YGCDPYDPAG---FRAWA---LKGGCPAIPGVLVLFNKLIESGLKVILVTGR  169 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~-~--~g~~~~~~~~---~~~~~---~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR  169 (254)
                      .++..+|+|+|+||+.+..-.... .  +.....+.+.   ...+.   ........||+.++|+.|.+. ++++++|+.
T Consensus         4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~~   82 (156)
T TIGR02250         4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTMG   82 (156)
T ss_pred             CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeCC
Confidence            578999999999999875321000 0  0000000000   00000   001245789999999999955 999999999


Q ss_pred             CccccHHHHHHHHHhCCCCC-CC-cEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEEeC
Q 025360          170 DEETFGQVTRDNLHNQGFVG-YE-RLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLP  247 (254)
Q Consensus       170 ~~e~~r~~T~~~L~~~G~~~-~~-~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fklP  247 (254)
                      +    +..+...|+.++... ++ +.++..++..+   ...|. + ..+-....+.++.|+|+..=.....  .-.+.++
T Consensus        83 ~----~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~---~~~Kd-L-~~i~~~d~~~vvivDd~~~~~~~~~--~N~i~i~  151 (156)
T TIGR02250        83 T----RAYAQAIAKLIDPDGKYFGDRIISRDESGS---PHTKS-L-LRLFPADESMVVIIDDREDVWPWHK--RNLIQIE  151 (156)
T ss_pred             c----HHHHHHHHHHhCcCCCeeccEEEEeccCCC---Ccccc-H-HHHcCCCcccEEEEeCCHHHhhcCc--cCEEEeC
Confidence            9    677777888888773 54 44444333222   12232 1 1122223456888999985444433  2355555


Q ss_pred             CCCCC
Q 025360          248 NPMYF  252 (254)
Q Consensus       248 Np~y~  252 (254)
                      -..||
T Consensus       152 ~~~~f  156 (156)
T TIGR02250       152 PYNYF  156 (156)
T ss_pred             CcccC
Confidence            54443

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>PLN02887 hydrolase family protein

Probab=98.16  E-value=6.8e-06  Score=80.68  Aligned_cols=59  Identities=17%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..+.|+|||||||+++.                          ...-+...+.+++|+++|++++++|||+    .....
T Consensus       307 ~iKLIa~DLDGTLLn~d--------------------------~~Is~~t~eAI~kl~ekGi~~vIATGR~----~~~i~  356 (580)
T PLN02887        307 KFSYIFCDMDGTLLNSK--------------------------SQISETNAKALKEALSRGVKVVIATGKA----RPAVI  356 (580)
T ss_pred             CccEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCeEEEEcCCC----HHHHH
Confidence            46789999999999762                          2356778899999999999999999999    66667


Q ss_pred             HHHHhCCCC
Q 025360          180 DNLHNQGFV  188 (254)
Q Consensus       180 ~~L~~~G~~  188 (254)
                      ..++++|+.
T Consensus       357 ~~l~~L~l~  365 (580)
T PLN02887        357 DILKMVDLA  365 (580)
T ss_pred             HHHHHhCcc
Confidence            777777765

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=98.15  E-value=1.9e-05  Score=67.89  Aligned_cols=134  Identities=19%  Similarity=0.253  Sum_probs=85.8

Q ss_pred             CCCCceEEEecCCccccchh-hhhhhccCCC--------CCChHHHHHHHHh-------------------CCCCCchHH
Q 025360           98 GDGMDAWILDVDDTCISNVY-YYKGKRYGCD--------PYDPAGFRAWALK-------------------GGCPAIPGV  149 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~-~~~~~~~g~~--------~~~~~~~~~~~~~-------------------~~~~~~pg~  149 (254)
                      +..+-.++||.|.|++|-.. -..-.-.+..        .|...-|++++..                   ...|..||+
T Consensus        10 ~~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~Pgm   89 (256)
T KOG3120|consen   10 SSPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIVPGM   89 (256)
T ss_pred             cCCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCCccH
Confidence            34567799999999997431 1111111211        1222347777652                   367899999


Q ss_pred             HHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHhCCCCCCC--------------cEEEecCCC----CCCCCcccHH
Q 025360          150 LVLFNKLIESGL-KVILVTGRDEETFGQVTRDNLHNQGFVGYE--------------RLIMRTAAD----KGKNAVTYKS  210 (254)
Q Consensus       150 ~ell~~L~~~G~-~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~--------------~lilr~~~~----~~kp~~~yK~  210 (254)
                      +++++.+++.|. .+++||.-.    .-..+.||+.+|+...|              .|.+++-..    ...|.-.-|-
T Consensus        90 v~lik~~ak~g~~eliIVSDaN----sfFIe~~Lea~~~~d~F~~IfTNPa~~da~G~L~v~pyH~~hsC~~CPsNmCKg  165 (256)
T KOG3120|consen   90 VRLIKSAAKLGCFELIIVSDAN----SFFIEEILEAAGIHDLFSEIFTNPACVDASGRLLVRPYHTQHSCNLCPSNMCKG  165 (256)
T ss_pred             HHHHHHHHhCCCceEEEEecCc----hhHHHHHHHHccHHHHHHHHhcCCcccCCCCcEEeecCCCCCccCcCchhhhhh
Confidence            999999999995 999999988    67788999999997533              244444322    1223323333


Q ss_pred             HHHHHH----HHcC--CcEEEEEcCCccccc
Q 025360          211 EIRKQL----LEEG--YRIWGNIGDQWSDLQ  235 (254)
Q Consensus       211 ~~r~~l----~~~G--y~i~~~IGDq~sDi~  235 (254)
                      .+..++    .+.|  |+..+||||.-+|+=
T Consensus       166 ~Vl~~~~~s~~~~gv~yer~iYvGDG~nD~C  196 (256)
T KOG3120|consen  166 LVLDELVASQLKDGVRYERLIYVGDGANDFC  196 (256)
T ss_pred             HHHHHHHHHHhhcCCceeeEEEEcCCCCCcC
Confidence            333333    3344  447999999999983

>COG4850 Uncharacterized conserved protein [Function unknown]

Probab=98.15  E-value=1.4e-05  Score=72.19  Aligned_cols=125  Identities=21%  Similarity=0.187  Sum_probs=88.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhC-CCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKG-GCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQVT  178 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~T  178 (254)
                      .-.+|-|||+|+..+.--         .-....|..|..+. ...++||+..+|+.|.+.| ..++++||.+ ...-...
T Consensus       161 ~igiISDiDDTV~~T~V~---------~~~r~~~~s~~l~~~tr~~ipGV~~~yr~l~~~~~apvfYvSnSP-w~~f~~L  230 (373)
T COG4850         161 GIGIISDIDDTVKVTGVT---------EGPRKAGRSLLLHALTRQVIPGVSAWYRALTNLGDAPVFYVSNSP-WQLFPTL  230 (373)
T ss_pred             ceeeeeccccceEecccc---------cchHHHHHHhhhcccccCCCCCHHHHHHHHHhcCCCCeEEecCCh-hHhHHHH
Confidence            345899999999987410         01135677887765 4689999999999999999 8999999999 8877777


Q ss_pred             HHHHHhCCCCCCCcEEEecCCC---C-CCCCccc-HHHHHHHHHHcCCcEEEEEcCCc-ccccc
Q 025360          179 RDNLHNQGFVGYERLIMRTAAD---K-GKNAVTY-KSEIRKQLLEEGYRIWGNIGDQW-SDLQG  236 (254)
Q Consensus       179 ~~~L~~~G~~~~~~lilr~~~~---~-~kp~~~y-K~~~r~~l~~~Gy~i~~~IGDq~-sDi~g  236 (254)
                      .+.+.+.+|| +..++++..+.   . ..+...- +..+|..+...+-.-++.|||+= .|.+.
T Consensus       231 ~efi~~~~~P-~GPl~L~~~g~~~~~i~~sga~rK~~~l~nil~~~p~~kfvLVGDsGE~DpeI  293 (373)
T COG4850         231 QEFITNRNFP-YGPLLLRRWGGVLDNIIESGAARKGQSLRNILRRYPDRKFVLVGDSGEHDPEI  293 (373)
T ss_pred             HHHHhcCCCC-CCchhHhhcCCcccccccchhhhcccHHHHHHHhCCCceEEEecCCCCcCHHH
Confidence            8888888998 66777775431   0 0111112 34556567776667778899974 57654

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=98.11  E-value=2.9e-06  Score=71.46  Aligned_cols=86  Identities=21%  Similarity=0.263  Sum_probs=62.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.++++.|+++|+++.++||..    +..+....+.+|+..  ..+.....  +||.+  | ...+.++..+.
T Consensus       125 ~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~----~~~a~~~~~~lgi~~--~~v~a~~~--~kP~~--k-~~~~~i~~l~~  193 (215)
T PF00702_consen  125 RDPLRPGAKEALQELKEAGIKVAILTGDN----ESTASAIAKQLGIFD--SIVFARVI--GKPEP--K-IFLRIIKELQV  193 (215)
T ss_dssp             EEEBHTTHHHHHHHHHHTTEEEEEEESSE----HHHHHHHHHHTTSCS--EEEEESHE--TTTHH--H-HHHHHHHHHTC
T ss_pred             cCcchhhhhhhhhhhhccCcceeeeeccc----ccccccccccccccc--cccccccc--ccccc--h-hHHHHHHHHhc
Confidence            46889999999999999999999999988    778888889999953  22222211  34422  2 12233333332


Q ss_pred             --cEEEEEcCCcccccccc
Q 025360          222 --RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 --~i~~~IGDq~sDi~ga~  238 (254)
                        ..|++|||+.+|+.+++
T Consensus       194 ~~~~v~~vGDg~nD~~al~  212 (215)
T PF00702_consen  194 KPGEVAMVGDGVNDAPALK  212 (215)
T ss_dssp             TGGGEEEEESSGGHHHHHH
T ss_pred             CCCEEEEEccCHHHHHHHH
Confidence              37999999999998876

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=98.06  E-value=3e-05  Score=68.72  Aligned_cols=135  Identities=19%  Similarity=0.184  Sum_probs=84.5

Q ss_pred             CCceEEEecCCccccchhhhhh-----hccC------CCCC--ChHHHHHHH----HhCCCC-CchHHHHHHHHHHHCCC
Q 025360          100 GMDAWILDVDDTCISNVYYYKG-----KRYG------CDPY--DPAGFRAWA----LKGGCP-AIPGVLVLFNKLIESGL  161 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~-----~~~g------~~~~--~~~~~~~~~----~~~~~~-~~pg~~ell~~L~~~G~  161 (254)
                      ...-||||||+||+-...+...     ..++      ....  -...+.+|+    ...... .=+.+.++++.|+++|+
T Consensus        19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~   98 (252)
T PF11019_consen   19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI   98 (252)
T ss_pred             CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence            4556999999999965422111     0011      1111  134566776    344443 44788999999999999


Q ss_pred             eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC--------CCCCCCccc-----------H-HHHHHHHHHcCC
Q 025360          162 KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA--------DKGKNAVTY-----------K-SEIRKQLLEEGY  221 (254)
Q Consensus       162 ~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~--------~~~kp~~~y-----------K-~~~r~~l~~~Gy  221 (254)
                      +++-+|.|. +..+..|.+.|+++|+. +..--++.++        ......+.|           | ..+..-|...|+
T Consensus        99 ~v~alT~~~-~~~~~~t~~~Lk~~gi~-fs~~~~~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~  176 (252)
T PF11019_consen   99 PVIALTARG-PNMEDWTLRELKSLGID-FSSSSFPEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQ  176 (252)
T ss_pred             cEEEEcCCC-hhhHHHHHHHHHHCCCC-ccccccccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCC
Confidence            999999999 99999999999999997 4322111111        001111222           2 334444566675


Q ss_pred             cE--EEEEcCCcccccc
Q 025360          222 RI--WGNIGDQWSDLQG  236 (254)
Q Consensus       222 ~i--~~~IGDq~sDi~g  236 (254)
                      .+  +++|+|+...+..
T Consensus       177 ~pk~IIfIDD~~~nl~s  193 (252)
T PF11019_consen  177 SPKKIIFIDDNKENLKS  193 (252)
T ss_pred             CCCeEEEEeCCHHHHHH
Confidence            54  9999999876543

The function is not known.

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=98.03  E-value=1.1e-05  Score=73.66  Aligned_cols=58  Identities=14%  Similarity=0.210  Sum_probs=48.4

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC----CCeEEEEeCCCccccHHHH
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES----GLKVILVTGRDEETFGQVT  178 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~----G~~i~~vTgR~~e~~r~~T  178 (254)
                      +++||+||||.++                           ..++|++.++++.|+++    |+++.|+||.. ...+...
T Consensus         2 ~~ifD~DGvL~~g---------------------------~~~i~ga~eal~~L~~~~~~~g~~~~flTNn~-g~s~~~~   53 (321)
T TIGR01456         2 GFAFDIDGVLFRG---------------------------KKPIAGASDALRRLNRNQGQLKIPYIFLTNGG-GFSERAR   53 (321)
T ss_pred             EEEEeCcCceECC---------------------------ccccHHHHHHHHHHhccccccCCCEEEEecCC-CCCHHHH
Confidence            6999999999986                           34599999999999998    99999999998 5555555


Q ss_pred             HHHH-HhCCCC
Q 025360          179 RDNL-HNQGFV  188 (254)
Q Consensus       179 ~~~L-~~~G~~  188 (254)
                      .+.| +++|++
T Consensus        54 ~~~l~~~lG~~   64 (321)
T TIGR01456        54 AEEISSLLGVD   64 (321)
T ss_pred             HHHHHHHcCCC
Confidence            5555 888986

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=98.02  E-value=1.8e-05  Score=66.96  Aligned_cols=52  Identities=29%  Similarity=0.445  Sum_probs=42.5

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      ++||+||||+++.                         ..++-+.+.+.+++|+++|.+++++|||+    .......+.
T Consensus         2 i~~D~DgTL~~~~-------------------------~~~~~~~~~~~l~~l~~~g~~~~i~TGR~----~~~~~~~~~   52 (204)
T TIGR01484         2 LFFDLDGTLLDPN-------------------------AHELSPETIEALERLREAGVKVVLVTGRS----LAEIKELLK   52 (204)
T ss_pred             EEEeCcCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCC----HHHHHHHHH
Confidence            7899999999752                         13466889999999999999999999999    555556665


Q ss_pred             h
Q 025360          184 N  184 (254)
Q Consensus       184 ~  184 (254)
                      .
T Consensus        53 ~   53 (204)
T TIGR01484        53 Q   53 (204)
T ss_pred             h
Confidence            5

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=98.01  E-value=2.5e-05  Score=76.46  Aligned_cols=103  Identities=19%  Similarity=0.231  Sum_probs=77.1

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~  177 (254)
                      .+...+.+..||+.+-..                       .-.+++.||+.+++++|+++| ++++++||.+    +..
T Consensus       362 ~g~~~~~v~~~~~~~g~i-----------------------~~~d~~~~g~~e~l~~L~~~g~i~v~ivTgd~----~~~  414 (556)
T TIGR01525       362 QGKTVVFVAVDGELLGVI-----------------------ALRDQLRPEAKEAIAALKRAGGIKLVMLTGDN----RSA  414 (556)
T ss_pred             CCcEEEEEEECCEEEEEE-----------------------EecccchHhHHHHHHHHHHcCCCeEEEEeCCC----HHH
Confidence            456678888888666442                       114789999999999999999 9999999999    788


Q ss_pred             HHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCccccccccc
Q 025360          178 TRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECT  239 (254)
Q Consensus       178 T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~  239 (254)
                      +...++++|++.++.-+    .      +.-|....+.+...| ..+++|||+.+|+.+++.
T Consensus       415 a~~i~~~lgi~~~f~~~----~------p~~K~~~v~~l~~~~-~~v~~vGDg~nD~~al~~  465 (556)
T TIGR01525       415 AEAVAAELGIDEVHAEL----L------PEDKLAIVKELQEEG-GVVAMVGDGINDAPALAA  465 (556)
T ss_pred             HHHHHHHhCCCeeeccC----C------HHHHHHHHHHHHHcC-CEEEEEECChhHHHHHhh
Confidence            88899999997543311    0      112344455555545 489999999999999874

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=97.93  E-value=8.9e-05  Score=63.79  Aligned_cols=113  Identities=14%  Similarity=0.052  Sum_probs=77.7

Q ss_pred             CCChHHHHHHHHh----CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCC-
Q 025360          128 PYDPAGFRAWALK----GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKG-  202 (254)
Q Consensus       128 ~~~~~~~~~~~~~----~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~-  202 (254)
                      .++..++++++..    ...+|-+-..++|-.|+.++  ..+.||-+    +...++.|+++|+.+.|+-+..-+...+ 
T Consensus        80 ~~d~deY~~~V~~~LPlq~LkPD~~LRnlLL~l~~r~--k~~FTNa~----k~HA~r~Lk~LGieDcFegii~~e~~np~  153 (244)
T KOG3109|consen   80 IFDADEYHRFVHGRLPLQDLKPDPVLRNLLLSLKKRR--KWIFTNAY----KVHAIRILKKLGIEDCFEGIICFETLNPI  153 (244)
T ss_pred             cCCHHHHHHHhhccCcHhhcCCCHHHHHHHHhCcccc--EEEecCCc----HHHHHHHHHHhChHHhccceeEeeccCCC
Confidence            4567778888764    34677778888988888877  67789999    8899999999999886554443322221 


Q ss_pred             -CCC--cccHHHHHHHHHHcCC---cEEEEEcCCcccccccc-cCCcEEEe
Q 025360          203 -KNA--VTYKSEIRKQLLEEGY---RIWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       203 -kp~--~~yK~~~r~~l~~~Gy---~i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                       ++.  .+-.++.-.++...|.   +-+..++|+.+-|++|+ .|.+++.+
T Consensus       154 ~~~~vcKP~~~afE~a~k~agi~~p~~t~FfDDS~~NI~~ak~vGl~tvlv  204 (244)
T KOG3109|consen  154 EKTVVCKPSEEAFEKAMKVAGIDSPRNTYFFDDSERNIQTAKEVGLKTVLV  204 (244)
T ss_pred             CCceeecCCHHHHHHHHHHhCCCCcCceEEEcCchhhHHHHHhccceeEEE
Confidence             111  1122333344555554   46999999999999998 67777654

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=97.92  E-value=2.2e-05  Score=76.56  Aligned_cols=83  Identities=22%  Similarity=0.218  Sum_probs=66.0

Q ss_pred             CCCCchHHHHHHHHHHHCCC-eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGL-KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~-~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      .+++.||+.+.++.|+++|+ +++++||++    +..++..++++|++.++.-..        |  .-|....+++...+
T Consensus       360 ~d~l~~~~~e~i~~L~~~Gi~~v~vvTgd~----~~~a~~i~~~lgi~~~f~~~~--------p--~~K~~~i~~l~~~~  425 (536)
T TIGR01512       360 SDEPRPDAAEAIAELKALGIEKVVMLTGDR----RAVAERVARELGIDEVHAELL--------P--EDKLEIVKELREKY  425 (536)
T ss_pred             eccchHHHHHHHHHHHHcCCCcEEEEcCCC----HHHHHHHHHHcCChhhhhccC--------c--HHHHHHHHHHHhcC
Confidence            57899999999999999999 999999999    788889999999976543111        1  12444555566555


Q ss_pred             CcEEEEEcCCccccccccc
Q 025360          221 YRIWGNIGDQWSDLQGECT  239 (254)
Q Consensus       221 y~i~~~IGDq~sDi~ga~~  239 (254)
                       +.+++|||+.+|+.+++.
T Consensus       426 -~~v~~vGDg~nD~~al~~  443 (536)
T TIGR01512       426 -GPVAMVGDGINDAPALAA  443 (536)
T ss_pred             -CEEEEEeCCHHHHHHHHh
Confidence             689999999999998873

.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=97.92  E-value=3.2e-05  Score=76.62  Aligned_cols=61  Identities=11%  Similarity=0.077  Sum_probs=48.7

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      -.++.|++||||||+++.                          ....+.+.+.++.|+++|++++++|||+    ....
T Consensus       414 ~~~KLIfsDLDGTLLd~d--------------------------~~i~~~t~eAL~~L~ekGI~~VIATGRs----~~~i  463 (694)
T PRK14502        414 QFKKIVYTDLDGTLLNPL--------------------------TYSYSTALDALRLLKDKELPLVFCSAKT----MGEQ  463 (694)
T ss_pred             ceeeEEEEECcCCCcCCC--------------------------CccCHHHHHHHHHHHHcCCeEEEEeCCC----HHHH
Confidence            456889999999999863                          1233467889999999999999999999    6666


Q ss_pred             HHHHHhCCCCC
Q 025360          179 RDNLHNQGFVG  189 (254)
Q Consensus       179 ~~~L~~~G~~~  189 (254)
                      ...++.+|+..
T Consensus       464 ~~l~~~Lgl~~  474 (694)
T PRK14502        464 DLYRNELGIKD  474 (694)
T ss_pred             HHHHHHcCCCC
Confidence            67778888753

>KOG2116 consensus Protein involved in plasmid maintenance/nuclear protein involved in lipid metabolism [Cell motility; Lipid transport and metabolism]

Probab=97.89  E-value=9.7e-05  Score=72.06  Aligned_cols=120  Identities=20%  Similarity=0.201  Sum_probs=81.7

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHH-hCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWAL-KGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~-~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      -+.||-|||||+.-+.-      .|          ..+. -|++=.--|+.+|+...+++||+++|+|+|. -.|...|.
T Consensus       530 ~kIVISDIDGTITKSDv------LG----------h~lp~iGkDWTh~GVAkLyt~Ik~NGYk~lyLSARa-IgQA~~TR  592 (738)
T KOG2116|consen  530 DKIVISDIDGTITKSDV------LG----------HVLPMIGKDWTHTGVAKLYTKIKENGYKILYLSARA-IGQADSTR  592 (738)
T ss_pred             CcEEEecCCCceEhhhh------hh----------hhhhhhcCcchhhhHHHHHHHHHhCCeeEEEEehhh-hhhhHHHH
Confidence            35688899999997531      11          1111 1344456799999999999999999999999 88888887


Q ss_pred             HHHHhC---CCCCC-CcEEEecCCC---------CCCCCcccHHHHHHHHHHc---CCc-EEEEEcCCcccccccc
Q 025360          180 DNLHNQ---GFVGY-ERLIMRTAAD---------KGKNAVTYKSEIRKQLLEE---GYR-IWGNIGDQWSDLQGEC  238 (254)
Q Consensus       180 ~~L~~~---G~~~~-~~lilr~~~~---------~~kp~~~yK~~~r~~l~~~---Gy~-i~~~IGDq~sDi~ga~  238 (254)
                      ..|+..   |..-. ..++++++..         .+|| ..||-+....|..+   .++ -.+-+|.+.+|.....
T Consensus       593 ~yL~nv~QdG~~LPdGPViLSPd~lf~Al~REVI~RkP-e~FKIAcL~DIk~LF~p~~nPFYAgFGNR~TDviSY~  667 (738)
T KOG2116|consen  593 QYLKNVEQDGKKLPDGPVILSPDSLFAALHREVIERKP-EVFKIACLTDIKNLFPPSGNPFYAGFGNRITDVISYR  667 (738)
T ss_pred             HHHHHHhhcCccCCCCCEEeCCCcchHHHHHHHHHcCc-hhhhHHHHHHHHHhcCCCCCceeeecCCCcccceeee
Confidence            666544   54321 3578887652         1343 46776655555542   233 3677999999998776

>KOG2882 consensus p-Nitrophenyl phosphatase [Inorganic ion transport and metabolism]

Probab=97.89  E-value=2.7e-05  Score=69.81  Aligned_cols=97  Identities=29%  Similarity=0.404  Sum_probs=71.5

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      ++-+.+|||.||.|..                           ...++||+.+.++.|+++|.+++|+||.+ .+.|+..
T Consensus        20 ~~~DtfifDcDGVlW~---------------------------g~~~ipGs~e~l~~L~~~gK~i~fvTNNS-tksr~~y   71 (306)
T KOG2882|consen   20 DSFDTFIFDCDGVLWL---------------------------GEKPIPGSPEALNLLKSLGKQIIFVTNNS-TKSREQY   71 (306)
T ss_pred             hhcCEEEEcCCcceee---------------------------cCCCCCChHHHHHHHHHcCCcEEEEeCCC-cchHHHH
Confidence            5578999999995543                           26699999999999999999999999999 8889999


Q ss_pred             HHHHHhCCCCCC-CcEEEecCCC------CCCC--Cccc---HHHHHHHHHHcCCcE
Q 025360          179 RDNLHNQGFVGY-ERLIMRTAAD------KGKN--AVTY---KSEIRKQLLEEGYRI  223 (254)
Q Consensus       179 ~~~L~~~G~~~~-~~lilr~~~~------~~kp--~~~y---K~~~r~~l~~~Gy~i  223 (254)
                      .+.++++|+... .+-++.+...      +.+|  ..+|   -+.+++.|++.|++.
T Consensus        72 ~kK~~~lG~~~v~e~~i~ssa~~~a~ylk~~~~~~k~Vyvig~~gi~~eL~~aG~~~  128 (306)
T KOG2882|consen   72 MKKFAKLGFNSVKEENIFSSAYAIADYLKKRKPFGKKVYVIGEEGIREELDEAGFEY  128 (306)
T ss_pred             HHHHHHhCccccCcccccChHHHHHHHHHHhCcCCCeEEEecchhhhHHHHHcCcee
Confidence            999999999742 1222222110      1111  1233   377889999999654

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=97.84  E-value=0.00015  Score=60.53  Aligned_cols=133  Identities=17%  Similarity=0.165  Sum_probs=68.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHH-HHHH-h-CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFR-AWAL-K-GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQV  177 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~-~~~~-~-~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~  177 (254)
                      ++.||||+|.||-.-.-+..    ...||....=. .-++ . .....+|++.++|+.|+++|++|+++|... +  -+.
T Consensus         3 PklvvFDLD~TlW~~~~~~~----~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~-~--P~~   75 (169)
T PF12689_consen    3 PKLVVFDLDYTLWPPWMDTH----VGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRTD-E--PDW   75 (169)
T ss_dssp             -SEEEE-STTTSSSS-TTTS----S-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE--S----HHH
T ss_pred             CcEEEEcCcCCCCchhHhhc----cCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCC-C--hHH
Confidence            68999999999987542221    11122100000 0000 1 235789999999999999999999999655 2  367


Q ss_pred             HHHHHHhCCCC----------CCCcEEEecCCCCCCCCcccHHHHHHHHH-HcC--CcEEEEEcCCcccccccc-cCCcE
Q 025360          178 TRDNLHNQGFV----------GYERLIMRTAADKGKNAVTYKSEIRKQLL-EEG--YRIWGNIGDQWSDLQGEC-TGNRT  243 (254)
Q Consensus       178 T~~~L~~~G~~----------~~~~lilr~~~~~~kp~~~yK~~~r~~l~-~~G--y~i~~~IGDq~sDi~ga~-~g~r~  243 (254)
                      +.+.|+.++++          .+++..-=   ..+     -|..-+++|. +.|  |...+.++|...-+.... .|..+
T Consensus        76 A~~~L~~l~i~~~~~~~~~~~~~F~~~eI---~~g-----sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~~~v~~lGV~~  147 (169)
T PF12689_consen   76 ARELLKLLEIDDADGDGVPLIEYFDYLEI---YPG-----SKTTHFRRIHRKTGIPYEEMLFFDDESRNIEVVSKLGVTC  147 (169)
T ss_dssp             HHHHHHHTT-C----------CCECEEEE---SSS------HHHHHHHHHHHH---GGGEEEEES-HHHHHHHHTTT-EE
T ss_pred             HHHHHHhcCCCccccccccchhhcchhhe---ecC-----chHHHHHHHHHhcCCChhHEEEecCchhcceeeEecCcEE
Confidence            77889999998          33322110   111     1222222222 333  567999999876554444 79888


Q ss_pred             EEeCC
Q 025360          244 FKLPN  248 (254)
Q Consensus       244 fklPN  248 (254)
                      +.+||
T Consensus       148 v~v~~  152 (169)
T PF12689_consen  148 VLVPD  152 (169)
T ss_dssp             EE-SS
T ss_pred             EEeCC
Confidence            88888

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=97.84  E-value=4.5e-05  Score=67.94  Aligned_cols=62  Identities=18%  Similarity=0.145  Sum_probs=47.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHH-CCCeEEEEeCCCccccHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIE-SGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~-~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ...|+||+||||++..+            +         ......-|.+.+.|+.|.+ .|+.++++|||+    .....
T Consensus        14 ~~li~~D~DGTLl~~~~------------~---------p~~~~i~~~~~~~L~~L~~~~g~~v~i~SGR~----~~~~~   68 (266)
T PRK10187         14 NYAWFFDLDGTLAEIKP------------H---------PDQVVVPDNILQGLQLLATANDGALALISGRS----MVELD   68 (266)
T ss_pred             CEEEEEecCCCCCCCCC------------C---------cccccCCHHHHHHHHHHHhCCCCcEEEEeCCC----HHHHH
Confidence            56899999999997421            0         0124567899999999998 799999999999    66666


Q ss_pred             HHHHhCCC
Q 025360          180 DNLHNQGF  187 (254)
Q Consensus       180 ~~L~~~G~  187 (254)
                      +++...++
T Consensus        69 ~~~~~~~~   76 (266)
T PRK10187         69 ALAKPYRF   76 (266)
T ss_pred             HhcCcccc
Confidence            67765553

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=97.82  E-value=4.5e-05  Score=66.86  Aligned_cols=61  Identities=15%  Similarity=0.211  Sum_probs=47.5

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      ..|+.|+|||||+..                       .+..+..|...++++.++++|+.++++|||+    .......
T Consensus         2 ~li~tDlDGTLl~~~-----------------------~~~~~~~~~~~~~i~~~~~~gi~fv~aTGR~----~~~~~~~   54 (249)
T TIGR01485         2 LLLVSDLDNTLVDHT-----------------------DGDNQALLRLNALLEDHRGEDSLLVYSTGRS----PHSYKEL   54 (249)
T ss_pred             eEEEEcCCCcCcCCC-----------------------CCChHHHHHHHHHHHHhhccCceEEEEcCCC----HHHHHHH
Confidence            368889999999731                       0124466888999999999999999999999    6666666


Q ss_pred             HHhCCCCC
Q 025360          182 LHNQGFVG  189 (254)
Q Consensus       182 L~~~G~~~  189 (254)
                      +++++++.
T Consensus        55 ~~~~~~~~   62 (249)
T TIGR01485        55 QKQKPLLT   62 (249)
T ss_pred             HhcCCCCC
Confidence            67677753

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=97.81  E-value=0.00016  Score=71.02  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=62.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.++++.|+++|++++++||..    +..++..++++|++ +    ....    +|  .-|....+.+...+ 
T Consensus       403 ~d~l~~~a~e~i~~Lk~~Gi~v~ilSgd~----~~~a~~ia~~lgi~-~----~~~~----~p--~~K~~~v~~l~~~~-  466 (562)
T TIGR01511       403 EDQLRPEAKEVIQALKRRGIEPVMLTGDN----RKTAKAVAKELGIN-V----RAEV----LP--DDKAALIKELQEKG-  466 (562)
T ss_pred             cccccHHHHHHHHHHHHcCCeEEEEcCCC----HHHHHHHHHHcCCc-E----EccC----Ch--HHHHHHHHHHHHcC-
Confidence            47799999999999999999999999999    77888888999996 2    1111    11  22444445555544 


Q ss_pred             cEEEEEcCCccccccccc
Q 025360          222 RIWGNIGDQWSDLQGECT  239 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~~  239 (254)
                      +.+++|||+.+|+.+.+.
T Consensus       467 ~~v~~VGDg~nD~~al~~  484 (562)
T TIGR01511       467 RVVAMVGDGINDAPALAQ  484 (562)
T ss_pred             CEEEEEeCCCccHHHHhh
Confidence            679999999999988873

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>PLN02423 phosphomannomutase

Probab=97.72  E-value=8.2e-05  Score=65.45  Aligned_cols=44  Identities=27%  Similarity=0.305  Sum_probs=36.3

Q ss_pred             CCceEE-EecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          100 GMDAWI-LDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       100 ~~~avI-fDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      ++++++ |||||||++..                          ...-|...+.+++|+++ +.++++|||.
T Consensus         5 ~~~~i~~~D~DGTLl~~~--------------------------~~i~~~~~~ai~~l~~~-i~fviaTGR~   49 (245)
T PLN02423          5 KPGVIALFDVDGTLTAPR--------------------------KEATPEMLEFMKELRKV-VTVGVVGGSD   49 (245)
T ss_pred             ccceEEEEeccCCCcCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEECCcC
Confidence            466666 99999999753                          23457889999999977 9999999998

>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]

Probab=97.68  E-value=0.00027  Score=60.50  Aligned_cols=100  Identities=23%  Similarity=0.290  Sum_probs=78.3

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.+.+++||-|||-..                           ..++||+.|.++.|+..+.+|=|+||-+ .+.+....
T Consensus         6 ~v~gvLlDlSGtLh~e---------------------------~~avpga~eAl~rLr~~~~kVkFvTNtt-k~Sk~~l~   57 (262)
T KOG3040|consen    6 AVKGVLLDLSGTLHIE---------------------------DAAVPGAVEALKRLRDQHVKVKFVTNTT-KESKRNLH   57 (262)
T ss_pred             ccceEEEeccceEecc---------------------------cccCCCHHHHHHHHHhcCceEEEEecCc-chhHHHHH
Confidence            4678999999998764                           3399999999999999999999999999 77788888


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCc-ccccccc
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQW-SDLQGEC  238 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~-sDi~ga~  238 (254)
                      +.|.++||..-.+-+.++           ....+.-+++.++|+-+.|.|.. .|+.|-.
T Consensus        58 ~rL~rlgf~v~eeei~ts-----------l~aa~~~~~~~~lrP~l~v~d~a~~dF~gid  106 (262)
T KOG3040|consen   58 ERLQRLGFDVSEEEIFTS-----------LPAARQYLEENQLRPYLIVDDDALEDFDGID  106 (262)
T ss_pred             HHHHHhCCCccHHHhcCc-----------cHHHHHHHHhcCCCceEEEcccchhhCCCcc
Confidence            899999997422222222           23456677888999888887765 6777655

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=97.65  E-value=0.00027  Score=63.12  Aligned_cols=73  Identities=21%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      ..+..|+||+|+||+...                       .....+-|.+.+-++.|++.|.-+++=|...    ++..
T Consensus       120 ~~phVIVfDlD~TLItd~-----------------------~~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~----~eHV  172 (297)
T PF05152_consen  120 EPPHVIVFDLDSTLITDE-----------------------GDVRIRDPAVYDSLRELKEQGCVLVLWSYGN----REHV  172 (297)
T ss_pred             CCCcEEEEECCCcccccC-----------------------CccccCChHHHHHHHHHHHcCCEEEEecCCC----HHHH
Confidence            457799999999999653                       0123466889999999999999999999988    8888


Q ss_pred             HHHHHhCCCCCCCcEEEecC
Q 025360          179 RDNLHNQGFVGYERLIMRTA  198 (254)
Q Consensus       179 ~~~L~~~G~~~~~~lilr~~  198 (254)
                      ...|++.|++++|++++++.
T Consensus       173 ~~sl~~~~L~~~Fd~ii~~G  192 (297)
T PF05152_consen  173 RHSLKELKLEGYFDIIICGG  192 (297)
T ss_pred             HHHHHHhCCccccEEEEeCC
Confidence            89999999999999988764

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=97.64  E-value=1.4e-05  Score=69.81  Aligned_cols=94  Identities=19%  Similarity=0.224  Sum_probs=61.4

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEE--EecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLI--MRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~li--lr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      -++++.++++.|+++|.++ ++||++ ....   ...+...|...++..+  ...+. ..+||.+.   .....++..|.
T Consensus       139 ~~~~~~~~l~~l~~~g~~~-i~tN~d-~~~~---~~~~~~~~~g~~~~~i~~~g~~~~~~gKP~~~---~~~~~~~~~~~  210 (242)
T TIGR01459       139 DLDEFDELFAPIVARKIPN-ICANPD-RGIN---QHGIYRYGAGYYAELIKQLGGKVIYSGKPYPA---IFHKALKECSN  210 (242)
T ss_pred             CHHHHHHHHHHHHhCCCcE-EEECCC-Eecc---CCCceEecccHHHHHHHHhCCcEecCCCCCHH---HHHHHHHHcCC
Confidence            4789999999999999997 889998 4332   2345555554444332  23322 35676543   33334445442


Q ss_pred             ---cEEEEEcCC-cccccccc-cCCcEEEe
Q 025360          222 ---RIWGNIGDQ-WSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       222 ---~i~~~IGDq-~sDi~ga~-~g~r~fkl  246 (254)
                         ..+++|||+ .+|+.+|+ +|.+++.+
T Consensus       211 ~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v  240 (242)
T TIGR01459       211 IPKNRMLMVGDSFYTDILGANRLGIDTALV  240 (242)
T ss_pred             CCcccEEEECCCcHHHHHHHHHCCCeEEEE
Confidence               359999999 59999998 68877654

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial

Probab=97.63  E-value=9.2e-05  Score=64.24  Aligned_cols=53  Identities=15%  Similarity=0.184  Sum_probs=40.4

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH  183 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~  183 (254)
                      |++|+||||+++.+.                           ++...++++ ++++|+.++++|||+    .......+.
T Consensus         2 i~~DlDgTLl~~~~~---------------------------~~~~~~~~~-~~~~gi~~viaTGR~----~~~v~~~~~   49 (236)
T TIGR02471         2 IITDLDNTLLGDDEG---------------------------LASFVELLR-GSGDAVGFGIATGRS----VESAKSRYA   49 (236)
T ss_pred             eEEeccccccCCHHH---------------------------HHHHHHHHH-hcCCCceEEEEeCCC----HHHHHHHHH
Confidence            789999999975311                           111225666 689999999999999    777888888


Q ss_pred             hCCCC
Q 025360          184 NQGFV  188 (254)
Q Consensus       184 ~~G~~  188 (254)
                      .+++.
T Consensus        50 ~l~l~   54 (236)
T TIGR02471        50 KLNLP   54 (236)
T ss_pred             hCCCC
Confidence            88875

Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.

>TIGR01522 ATPase-IIA2_Ca golgi membrane calcium-translocating P-type ATPase

Probab=97.61  E-value=0.0002  Score=73.88  Aligned_cols=93  Identities=22%  Similarity=0.273  Sum_probs=70.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCC----------------CC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKG----------------KN  204 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~----------------kp  204 (254)
                      .+++.|++.+.++.|+++|+++.++||..    ...+....++.|+...+...+.+.+ +..                ..
T Consensus       526 ~Dp~r~~~~~~i~~l~~~Gi~v~miTGD~----~~tA~~ia~~~Gi~~~~~~~v~g~~l~~~~~~~l~~~~~~~~Vfar~  601 (884)
T TIGR01522       526 NDPPRPGVKEAVTTLITGGVRIIMITGDS----QETAVSIARRLGMPSKTSQSVSGEKLDAMDDQQLSQIVPKVAVFARA  601 (884)
T ss_pred             cCcchhHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCCCCCceeEhHHhHhCCHHHHHHHhhcCeEEEEC
Confidence            46899999999999999999999999999    7777778889999754433333322 110                12


Q ss_pred             CcccHHHHHHHHHHcCCcEEEEEcCCccccccccc
Q 025360          205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECT  239 (254)
Q Consensus       205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~  239 (254)
                      .+..|..+-+.+++.| ..++++||..+|..+.+.
T Consensus       602 ~P~~K~~iv~~lq~~g-~~v~mvGDGvND~pAl~~  635 (884)
T TIGR01522       602 SPEHKMKIVKALQKRG-DVVAMTGDGVNDAPALKL  635 (884)
T ss_pred             CHHHHHHHHHHHHHCC-CEEEEECCCcccHHHHHh
Confidence            2456777777888877 578999999999988773

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1 the former of which is modelled by TIGR01116.

>COG5083 SMP2 Uncharacterized protein involved in plasmid maintenance [General function prediction only]

Probab=97.50  E-value=0.00046  Score=64.77  Aligned_cols=123  Identities=17%  Similarity=0.207  Sum_probs=85.3

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..+.||+|||||+.-+...  .|.+             -..++.=---|+..|+.....+||+|.++|+|+ -.+...|.
T Consensus       374 n~kiVVsDiDGTITkSD~~--Ghv~-------------~miGkdwth~gVAkLYtdI~rNGYkI~YltsR~-~Gqa~sTr  437 (580)
T COG5083         374 NKKIVVSDIDGTITKSDAL--GHVK-------------QMIGKDWTHNGVAKLYTDIDRNGYKIKYLTSRS-YGQADSTR  437 (580)
T ss_pred             CCcEEEEecCCcEEehhhH--HHHH-------------HHhccchhhcchhhhhhhhccCceEEEEEeccc-ccchhhhh
Confidence            4677999999999976421  0000             012334345678889999999999999999999 88888887


Q ss_pred             HHHH---hCCCCCCC-cEEEecCCCC--------CCCCcccHHHHHHHHHHcCCcE---EEEEcCCcccccccc
Q 025360          180 DNLH---NQGFVGYE-RLIMRTAADK--------GKNAVTYKSEIRKQLLEEGYRI---WGNIGDQWSDLQGEC  238 (254)
Q Consensus       180 ~~L~---~~G~~~~~-~lilr~~~~~--------~kp~~~yK~~~r~~l~~~Gy~i---~~~IGDq~sDi~ga~  238 (254)
                      .-|+   +.|+.-|+ .++|.++..-        .+....+|.+..+.|...+...   .+=+|...+|+.+..
T Consensus       438 sylrnieQngykLpdgpviLspd~t~aal~relIlrkpE~FKiayLndl~slf~e~~PFyAGFGNriTDvisY~  511 (580)
T COG5083         438 SYLRNIEQNGYKLPDGPVILSPDRTMAALYRELILRKPEVFKIAYLNDLKSLFIEFDPFYAGFGNRITDVISYS  511 (580)
T ss_pred             hHHHhhhhcCccCCCCCEeeccchhhhhhhhhhhhcChHHHHHHHHHHHHHhhCcCChhhccccccchhheeec
Confidence            6554   56776554 5777765411        1123578888888888776543   446899999998876

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=97.48  E-value=0.00015  Score=59.07  Aligned_cols=119  Identities=19%  Similarity=0.173  Sum_probs=61.7

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.+|||+||||+++...-..      +.+...- .-........-||+.+||+.|.+. +.|++.|+.. +.......+.
T Consensus         1 k~LVlDLD~TLv~~~~~~~~------~~~~~~~-~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~-~~ya~~v~~~   71 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPL------PYDFKII-DQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSAS-EEYAEPVLDA   71 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCT------T-SEEEE-TEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS--HHHHHHHHHH
T ss_pred             CEEEEeCCCcEEEEeecCCC------Cccccee-ccccceeEeeCchHHHHHHHHHHh-ceEEEEEeeh-hhhhhHHHHh
Confidence            47999999999987532110      0000000 000001234679999999999555 9999999999 6555555555


Q ss_pred             HHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccc
Q 025360          182 LHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQG  236 (254)
Q Consensus       182 L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~g  236 (254)
                      |...+-. +...+.+......+. ...|     .|...|.  .-++.|+|+..-+..
T Consensus        72 ldp~~~~-~~~~~~r~~~~~~~~-~~~K-----dL~~l~~~~~~vvivDD~~~~~~~  121 (159)
T PF03031_consen   72 LDPNGKL-FSRRLYRDDCTFDKG-SYIK-----DLSKLGRDLDNVVIVDDSPRKWAL  121 (159)
T ss_dssp             HTTTTSS-EEEEEEGGGSEEETT-EEE-------GGGSSS-GGGEEEEES-GGGGTT
T ss_pred             hhhhccc-ccccccccccccccc-cccc-----chHHHhhccccEEEEeCCHHHeec
Confidence            5543221 334444443211111 1122     3555554  558889999875543

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=97.46  E-value=0.0017  Score=54.70  Aligned_cols=96  Identities=15%  Similarity=0.063  Sum_probs=57.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCC----CCC---C-CcEEEecCCCC---CCCC---cc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQG----FVG---Y-ERLIMRTAADK---GKNA---VT  207 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G----~~~---~-~~lilr~~~~~---~kp~---~~  207 (254)
                      +...-||..++++.+++++++++++|+.. +   ......|+..+    +..   + ....+..++..   .+.+   -.
T Consensus        71 ~i~Idp~fKef~e~ike~di~fiVvSsGm-~---~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~ds~fG~  146 (220)
T COG4359          71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGM-D---PFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDDSQFGH  146 (220)
T ss_pred             hcccCccHHHHHHHHHHcCCCEEEEeCCC-c---hHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCccccCC
Confidence            46778999999999999999999999998 3   33333444333    321   1 11122211100   0001   12


Q ss_pred             cHHHHHHHHHHcCCcEEEEEcCCcccccccccCCc
Q 025360          208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNR  242 (254)
Q Consensus       208 yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r  242 (254)
                      -|+..-.++.+ .+.-+.+.||+.+|+.+|.....
T Consensus       147 dK~~vI~~l~e-~~e~~fy~GDsvsDlsaaklsDl  180 (220)
T COG4359         147 DKSSVIHELSE-PNESIFYCGDSVSDLSAAKLSDL  180 (220)
T ss_pred             CcchhHHHhhc-CCceEEEecCCcccccHhhhhhh
Confidence            34444444543 45669999999999999984333

>PLN03017 trehalose-phosphatase

Probab=97.45  E-value=0.00052  Score=63.80  Aligned_cols=69  Identities=19%  Similarity=0.070  Sum_probs=47.0

Q ss_pred             HHHHHHhh-hcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEE
Q 025360           88 LCYVNEVV-LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV  166 (254)
Q Consensus        88 ~~y~~~~~-~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~v  166 (254)
                      ...++++. ....++..+++|+||||+.-..           .          ...+.+-+++.+.|+.|. +|+.++++
T Consensus        97 l~~~~~~~~~~~~k~~llflD~DGTL~Piv~-----------~----------p~~a~i~~~~~~aL~~La-~~~~vaIv  154 (366)
T PLN03017         97 LEMFEQIMEASRGKQIVMFLDYDGTLSPIVD-----------D----------PDKAFMSSKMRRTVKKLA-KCFPTAIV  154 (366)
T ss_pred             HHHHHHHHHHhcCCCeEEEEecCCcCcCCcC-----------C----------cccccCCHHHHHHHHHHh-cCCcEEEE
Confidence            33334443 2345567888899999993210           0          013467899999999999 78999999


Q ss_pred             eCCCccccHHHHHHHH
Q 025360          167 TGRDEETFGQVTRDNL  182 (254)
Q Consensus       167 TgR~~e~~r~~T~~~L  182 (254)
                      |||+    +....+++
T Consensus       155 SGR~----~~~l~~~~  166 (366)
T PLN03017        155 TGRC----IDKVYNFV  166 (366)
T ss_pred             eCCC----HHHHHHhh
Confidence            9999    55555443

>PLN02151 trehalose-phosphatase

Probab=97.37  E-value=0.00064  Score=62.98  Aligned_cols=62  Identities=19%  Similarity=0.078  Sum_probs=46.8

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      ...++.++++|+||||+.-.+            +         ...+.+-|++.+.|+.|. +++.++++|||+    ++
T Consensus        94 ~~~~~~ll~lDyDGTL~PIv~------------~---------P~~A~~~~~~~~aL~~La-~~~~vaIvSGR~----~~  147 (354)
T PLN02151         94 SEGKQIVMFLDYDGTLSPIVD------------D---------PDRAFMSKKMRNTVRKLA-KCFPTAIVSGRC----RE  147 (354)
T ss_pred             hcCCceEEEEecCccCCCCCC------------C---------cccccCCHHHHHHHHHHh-cCCCEEEEECCC----HH
Confidence            345678899999999995321            0         124578899999999999 557999999999    77


Q ss_pred             HHHHHHHh
Q 025360          177 VTRDNLHN  184 (254)
Q Consensus       177 ~T~~~L~~  184 (254)
                      ...+++.-
T Consensus       148 ~l~~~~~~  155 (354)
T PLN02151        148 KVSSFVKL  155 (354)
T ss_pred             HHHHHcCC
Confidence            77766643

>COG4996 Predicted phosphatase [General function prediction only]

Probab=97.28  E-value=0.0013  Score=52.50  Aligned_cols=88  Identities=15%  Similarity=0.087  Sum_probs=61.1

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhC--CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKG--GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      +|+||.|||+-|......   + ..||..-+=+.-.+.+  +...+|.+.++++.++..|+-+..+|=+.    .....+
T Consensus         2 ~i~~d~d~t~wdhh~iSs---l-~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~----~~kA~~   73 (164)
T COG4996           2 AIVFDADKTLWDHHNISS---L-EPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWNF----EDKAIK   73 (164)
T ss_pred             cEEEeCCCcccccccchh---c-CCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCc----hHHHHH
Confidence            799999999998531110   0 0122110001111111  34689999999999999999999999888    677788


Q ss_pred             HHHhCCCCCCCcEEEecC
Q 025360          181 NLHNQGFVGYERLIMRTA  198 (254)
Q Consensus       181 ~L~~~G~~~~~~lilr~~  198 (254)
                      -|+.+|+..|++.++-..
T Consensus        74 aLral~~~~yFhy~VieP   91 (164)
T COG4996          74 ALRALDLLQYFHYIVIEP   91 (164)
T ss_pred             HHHHhchhhhEEEEEecC
Confidence            999999999998777654

>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional

Probab=97.17  E-value=0.00077  Score=68.14  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=49.3

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~  177 (254)
                      ..++.++||+||||++....                     .....+-+.+.+.|+.|.++ |..++++|||+    +..
T Consensus       490 ~~~rLi~~D~DGTL~~~~~~---------------------~~~~~~~~~~~~~L~~L~~d~g~~V~ivSGR~----~~~  544 (726)
T PRK14501        490 ASRRLLLLDYDGTLVPFAPD---------------------PELAVPDKELRDLLRRLAADPNTDVAIISGRD----RDT  544 (726)
T ss_pred             ccceEEEEecCccccCCCCC---------------------cccCCCCHHHHHHHHHHHcCCCCeEEEEeCCC----HHH
Confidence            45789999999999985310                     01245678999999999995 99999999999    666


Q ss_pred             HHHHHHhCCC
Q 025360          178 TRDNLHNQGF  187 (254)
Q Consensus       178 T~~~L~~~G~  187 (254)
                      .++++...++
T Consensus       545 l~~~~~~~~l  554 (726)
T PRK14501        545 LERWFGDLPI  554 (726)
T ss_pred             HHHHhCCCCe
Confidence            6777765543

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.13  E-value=0.0015  Score=66.18  Aligned_cols=81  Identities=14%  Similarity=0.056  Sum_probs=62.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.+.++.|+++|++++++||..    +..+....+++|+..+..      .   .  +.-|...-+++++.  
T Consensus       566 ~d~~r~~a~~~i~~L~~~gi~~~llTGd~----~~~a~~ia~~lgi~~~~~------~---~--p~~K~~~v~~l~~~--  628 (741)
T PRK11033        566 QDTLRADARQAISELKALGIKGVMLTGDN----PRAAAAIAGELGIDFRAG------L---L--PEDKVKAVTELNQH--  628 (741)
T ss_pred             ecCCchhHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCeecC------C---C--HHHHHHHHHHHhcC--
Confidence            46899999999999999999999999999    788888999999963221      0   1  12355555556543  


Q ss_pred             cEEEEEcCCccccccccc
Q 025360          222 RIWGNIGDQWSDLQGECT  239 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~~  239 (254)
                      ..+++|||..+|..+...
T Consensus       629 ~~v~mvGDgiNDapAl~~  646 (741)
T PRK11033        629 APLAMVGDGINDAPAMKA  646 (741)
T ss_pred             CCEEEEECCHHhHHHHHh
Confidence            369999999999887763

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=97.07  E-value=0.00027  Score=62.52  Aligned_cols=97  Identities=15%  Similarity=0.182  Sum_probs=63.2

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-C---CCCCCcccHHHHHHHHHHcC
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-D---KGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~---~~kp~~~yK~~~r~~l~~~G  220 (254)
                      .++++.+.++.|++.|.+++++||++ ..   .....+...|...++..+....+ .   .+||.+   ......++..|
T Consensus       121 ~y~~l~~a~~~L~~~~~~~~iatn~~-~~---~~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p---~~~~~~~~~~~  193 (257)
T TIGR01458       121 SYQILNQAFRLLLDGAKPLLIAIGKG-RY---YKRKDGLALDVGPFVTALEYATDTKATVVGKPSK---TFFLEALRATG  193 (257)
T ss_pred             CHHHHHHHHHHHHcCCCCEEEEeCCC-CC---CcCCCCCCCCchHHHHHHHHHhCCCceeecCCCH---HHHHHHHHHhC
Confidence            46888899999999999999999998 32   22233444455444433322222 1   246644   23333445555


Q ss_pred             C--cEEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          221 Y--RIWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y--~i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      .  +.+++|||+. +|+.+|+ +|.+++.+..
T Consensus       194 ~~~~~~~~vGD~~~~Di~~a~~~G~~~i~v~~  225 (257)
T TIGR01458       194 CEPEEAVMIGDDCRDDVGGAQDCGMRGIQVRT  225 (257)
T ss_pred             CChhhEEEECCCcHHHHHHHHHcCCeEEEECC
Confidence            4  4599999996 9999998 7888887743

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>PLN02382 probable sucrose-phosphatase

Probab=97.06  E-value=0.0019  Score=61.19  Aligned_cols=66  Identities=14%  Similarity=0.161  Sum_probs=45.2

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      .+..+..|+.|||||||++.        +               ......+....+++.+.++|+.++++|||+    ..
T Consensus         5 ~~~~~~lI~sDLDGTLL~~~--------~---------------~~~~s~~~~~~l~~~~~~~gi~fv~aTGR~----~~   57 (413)
T PLN02382          5 SGSPRLMIVSDLDHTMVDHH--------D---------------PENLSLLRFNALWEAEYRHDSLLVFSTGRS----PT   57 (413)
T ss_pred             cCCCCEEEEEcCCCcCcCCC--------C---------------ccchhHHHHHHHHHHhhcCCeeEEEEcCCC----HH
Confidence            34456788889999999762        0               011122334455578899999999999999    66


Q ss_pred             HHHHHHHhCCCCC
Q 025360          177 VTRDNLHNQGFVG  189 (254)
Q Consensus       177 ~T~~~L~~~G~~~  189 (254)
                      .....++..++..
T Consensus        58 ~~~~l~~~~~l~~   70 (413)
T PLN02382         58 LYKELRKEKPLLT   70 (413)
T ss_pred             HHHHHHHhCCCCC
Confidence            6666666676653

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.04  E-value=0.0017  Score=65.32  Aligned_cols=80  Identities=23%  Similarity=0.272  Sum_probs=63.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++-|++.+.++.|+++|++++++||-.    +...+..=+++|++.+..-+ .         +.-|..+-+++++.| 
T Consensus       535 ~D~~R~~a~~aI~~L~~~Gi~~~mLTGDn----~~~A~~iA~~lGId~v~Ael-l---------PedK~~~V~~l~~~g-  599 (713)
T COG2217         535 ADELRPDAKEAIAALKALGIKVVMLTGDN----RRTAEAIAKELGIDEVRAEL-L---------PEDKAEIVRELQAEG-  599 (713)
T ss_pred             eCCCChhHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcChHhheccC-C---------cHHHHHHHHHHHhcC-
Confidence            57899999999999999999999999988    66677777889997542111 1         234677777888766 


Q ss_pred             cEEEEEcCCcccccc
Q 025360          222 RIWGNIGDQWSDLQG  236 (254)
Q Consensus       222 ~i~~~IGDq~sDi~g  236 (254)
                      +.+++|||..||--+
T Consensus       600 ~~VamVGDGINDAPA  614 (713)
T COG2217         600 RKVAMVGDGINDAPA  614 (713)
T ss_pred             CEEEEEeCCchhHHH
Confidence            788999999999744

>COG1877 OtsB Trehalose-6-phosphatase [Carbohydrate transport and metabolism]

Probab=97.01  E-value=0.0019  Score=57.67  Aligned_cols=66  Identities=18%  Similarity=0.115  Sum_probs=51.1

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccH
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFG  175 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r  175 (254)
                      ...++.+++||.||||.+-.++                     ...+++.++++++|+.|.++ ...++++|||+    .
T Consensus        14 ~~a~~~~~~lDyDGTl~~i~~~---------------------p~~a~~~~~l~~lL~~Las~~~~~v~iiSGR~----~   68 (266)
T COG1877          14 LNARKRLLFLDYDGTLTEIVPH---------------------PEAAVPDDRLLSLLQDLASDPRNVVAIISGRS----L   68 (266)
T ss_pred             ccccceEEEEeccccccccccC---------------------ccccCCCHHHHHHHHHHHhcCCCeEEEEeCCC----H
Confidence            3456899999999999986421                     12578999999999999999 45799999999    6


Q ss_pred             HHHHHHHHhCCC
Q 025360          176 QVTRDNLHNQGF  187 (254)
Q Consensus       176 ~~T~~~L~~~G~  187 (254)
                      +....++.-.|+
T Consensus        69 ~~l~~~~~v~~i   80 (266)
T COG1877          69 AELERLFGVPGI   80 (266)
T ss_pred             HHHHHhcCCCCc
Confidence            666666663333

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.01  E-value=0.0019  Score=66.39  Aligned_cols=82  Identities=20%  Similarity=0.272  Sum_probs=62.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.+.++.|++.|++++++||..    +..+...+++.|++.+   + .+..      +..|....+++...| 
T Consensus       648 ~d~~r~~a~~~i~~L~~~gi~v~~~Tgd~----~~~a~~ia~~lgi~~~---~-~~~~------p~~K~~~i~~l~~~~-  712 (834)
T PRK10671        648 RDPLRSDSVAALQRLHKAGYRLVMLTGDN----PTTANAIAKEAGIDEV---I-AGVL------PDGKAEAIKRLQSQG-  712 (834)
T ss_pred             cCcchhhHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcCCCEE---E-eCCC------HHHHHHHHHHHhhcC-
Confidence            46789999999999999999999999999    6777788899999742   2 1111      123555555565544 


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      ..+++|||+.+|+.+..
T Consensus       713 ~~v~~vGDg~nD~~al~  729 (834)
T PRK10671        713 RQVAMVGDGINDAPALA  729 (834)
T ss_pred             CEEEEEeCCHHHHHHHH
Confidence            46999999999998876

>COG5663 Uncharacterized conserved protein [Function unknown]

Probab=96.99  E-value=0.0016  Score=54.00  Aligned_cols=131  Identities=19%  Similarity=0.192  Sum_probs=79.3

Q ss_pred             eEEEecCCccccch-------hhhhhhccCCC--CC--------ChHHHHHHHHhCCC------CCchHHHHHHHHHHHC
Q 025360          103 AWILDVDDTCISNV-------YYYKGKRYGCD--PY--------DPAGFRAWALKGGC------PAIPGVLVLFNKLIES  159 (254)
Q Consensus       103 avIfDIDgTll~~~-------~~~~~~~~g~~--~~--------~~~~~~~~~~~~~~------~~~pg~~ell~~L~~~  159 (254)
                      -+.+|||||+.+..       ++|.+.---..  .|        ..+.+.+|++..+.      ..-.++...+..+++.
T Consensus         8 ~~ciDIDGtit~~~t~~~~~n~~f~kslse~d~t~y~lhkil~i~~ee~~k~~e~~ea~l~ke~l~~q~v~~~L~~~~e~   87 (194)
T COG5663           8 RCCIDIDGTITDDPTFAPYLNPAFEKSLSEADPTDYDLHKILNITTEEFWKWMEQTEAWLYKEALLAQLVKQVLPSLKEE   87 (194)
T ss_pred             heeeccCCceecCcccchhccHHHHhhhhhcccccccHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Confidence            46799999999742       12211100001  12        35678888875433      2334455556666655


Q ss_pred             CCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCc-ccccccc
Q 025360          160 GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQW-SDLQGEC  238 (254)
Q Consensus       160 G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~-sDi~ga~  238 (254)
                       .+++++|+|. ......|-.||....++ |+++.+.+-.  +|     ..++|      .+.+-+.+.|+. +-++.++
T Consensus        88 -~~L~~itar~-~dl~~iT~~~l~~q~ih-~~~l~i~g~h--~K-----V~~vr------th~idlf~ed~~~na~~iAk  151 (194)
T COG5663          88 -HRLIYITARK-ADLTRITYAWLFIQNIH-YDHLEIVGLH--HK-----VEAVR------THNIDLFFEDSHDNAGQIAK  151 (194)
T ss_pred             -ceeeeeehhh-HHHHHHHHHHHHHhccc-hhhhhhhccc--cc-----chhhH------hhccCccccccCchHHHHHH
Confidence             8999999999 88888899999999998 8887766532  22     11111      234555666765 3444444


Q ss_pred             -cCCcEEEeCCC
Q 025360          239 -TGNRTFKLPNP  249 (254)
Q Consensus       239 -~g~r~fklPNp  249 (254)
                       +|.+++.+-.|
T Consensus       152 ~~~~~vilins~  163 (194)
T COG5663         152 NAGIPVILINSP  163 (194)
T ss_pred             hcCCcEEEecCc
Confidence             67666665443

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=96.98  E-value=0.00026  Score=63.26  Aligned_cols=96  Identities=17%  Similarity=0.048  Sum_probs=59.4

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEe---cC-CCCCCCCcccHHHHHHHHHHc
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMR---TA-ADKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr---~~-~~~~kp~~~yK~~~r~~l~~~  219 (254)
                      -.++++.++++.|+++|. ++++||++ ....  ....+...|...++..+..   .. ...+||.+..   ....++..
T Consensus       143 ~~y~~i~~~l~~L~~~g~-~~i~Tn~d-~~~~--~~~~~~~~~~g~~~~~i~~~~g~~~~~~gKP~p~~---~~~~~~~~  215 (279)
T TIGR01452       143 FSYAKLREACAHLREPGC-LFVATNRD-PWHP--LSDGSRTPGTGSLVAAIETASGRQPLVVGKPSPYM---FECITENF  215 (279)
T ss_pred             CCHHHHHHHHHHHhcCCC-EEEEeCCC-CCCC--CcCCCcccChHHHHHHHHHHhCCceeccCCCCHHH---HHHHHHHh
Confidence            358999999999999997 78999988 3221  1111222344333332221   11 1345765432   23344444


Q ss_pred             CC--cEEEEEcCCc-ccccccc-cCCcEEEe
Q 025360          220 GY--RIWGNIGDQW-SDLQGEC-TGNRTFKL  246 (254)
Q Consensus       220 Gy--~i~~~IGDq~-sDi~ga~-~g~r~fkl  246 (254)
                      |.  ..+++|||+. +|+.+|+ +|.+++.+
T Consensus       216 ~~~~~~~lmIGD~~~tDI~~A~~aGi~si~V  246 (279)
T TIGR01452       216 SIDPARTLMVGDRLETDILFGHRCGMTTVLV  246 (279)
T ss_pred             CCChhhEEEECCChHHHHHHHHHcCCcEEEE
Confidence            54  4599999995 9999997 78888766

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR00685 T6PP trehalose-phosphatase

Probab=96.94  E-value=0.0016  Score=56.98  Aligned_cols=50  Identities=22%  Similarity=0.300  Sum_probs=38.8

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCC
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRD  170 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~  170 (254)
                      ++.+++||+||||+...+            +         .....+-|++.++|+.|.+. +..++++|||+
T Consensus         2 ~~~~l~lD~DGTL~~~~~------------~---------p~~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~   52 (244)
T TIGR00685         2 RKRAFFFDYDGTLSEIVP------------D---------PDAAVVSDRLLTILQKLAARPHNAIWIISGRK   52 (244)
T ss_pred             CcEEEEEecCccccCCcC------------C---------CcccCCCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            467899999999997421            0         01356789999999999887 56788999997

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>PLN02580 trehalose-phosphatase

Probab=96.93  E-value=0.0029  Score=59.29  Aligned_cols=62  Identities=15%  Similarity=0.096  Sum_probs=48.3

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      ...++.+++||.||||..-.+            +         -..+.+-|++.+.|+.|.+. ..++|||||+    ++
T Consensus       115 ~~~k~~~LfLDyDGTLaPIv~------------~---------Pd~A~~s~~~~~aL~~La~~-~~VAIVSGR~----~~  168 (384)
T PLN02580        115 AKGKKIALFLDYDGTLSPIVD------------D---------PDRALMSDAMRSAVKNVAKY-FPTAIISGRS----RD  168 (384)
T ss_pred             hhcCCeEEEEecCCccCCCCC------------C---------cccccCCHHHHHHHHHHhhC-CCEEEEeCCC----HH
Confidence            345678899999999985321            0         12467889999999999998 5899999999    78


Q ss_pred             HHHHHHHh
Q 025360          177 VTRDNLHN  184 (254)
Q Consensus       177 ~T~~~L~~  184 (254)
                      ...+++.-
T Consensus       169 ~L~~~l~~  176 (384)
T PLN02580        169 KVYELVGL  176 (384)
T ss_pred             HHHHHhCC
Confidence            77777754

>TIGR01517 ATPase-IIB_Ca plasma-membrane calcium-translocating P-type ATPase

Probab=96.88  E-value=0.0035  Score=65.28  Aligned_cols=92  Identities=21%  Similarity=0.225  Sum_probs=66.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCC-----------------CCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADK-----------------GKN  204 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~-----------------~kp  204 (254)
                      .+++-|++.+.++.|++.|+++.++||..    .......-++.|+..-...++.+.+..                 ..-
T Consensus       577 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~----~~tA~~iA~~~GI~~~~~~vi~G~~~~~l~~~el~~~i~~~~Vfar~  652 (941)
T TIGR01517       577 KDPLRPGVREAVQECQRAGITVRMVTGDN----IDTAKAIARNCGILTFGGLAMEGKEFRRLVYEEMDPILPKLRVLARS  652 (941)
T ss_pred             cCCCchhHHHHHHHHHHCCCEEEEECCCC----hHHHHHHHHHcCCCCCCceEeeHHHhhhCCHHHHHHHhccCeEEEEC
Confidence            57899999999999999999999999988    455555556789963223344332210                 011


Q ss_pred             CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+..|..+-+.+++.|+ +++++||..||.-+-+
T Consensus       653 sPe~K~~iV~~lq~~g~-vVam~GDGvNDapALk  685 (941)
T TIGR01517       653 SPLDKQLLVLMLKDMGE-VVAVTGDGTNDAPALK  685 (941)
T ss_pred             CHHHHHHHHHHHHHCCC-EEEEECCCCchHHHHH
Confidence            24567778888888886 7899999999985544

The calcium P-type ATPases have been characterized as Type IIB based on a phylogenetic analysis which distinguishes this group from the Type IIA SERCA calcium pump. A separate analysis divides Type IIA into sub-types (SERCA and PMR1), which are modelled by the corresponding TIGR01116 and TIGR01522. This model is well separated from the two others.

>PLN02205 alpha,alpha-trehalose-phosphate synthase [UDP-forming]

Probab=96.83  E-value=0.0025  Score=65.57  Aligned_cols=59  Identities=19%  Similarity=0.194  Sum_probs=47.1

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHH-HHCCCeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKL-IESGLKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L-~~~G~~i~~vTgR~~e~~r~~  177 (254)
                      ..+.++++|+||||+...+                       ....+-|++.++|+.| .+.|..++++|||.    ++.
T Consensus       594 ~~~rlI~LDyDGTLlp~~~-----------------------~~~~p~~~~~~~L~~L~~d~g~~VaIvSGR~----~~~  646 (854)
T PLN02205        594 TTTRAILLDYDGTLMPQAS-----------------------IDKSPSSKSIDILNTLCRDKNNMVFIVSARS----RKT  646 (854)
T ss_pred             hcCeEEEEecCCcccCCcc-----------------------ccCCCCHHHHHHHHHHHhcCCCEEEEEeCCC----HHH
Confidence            4578999999999996531                       0235668999999998 67899999999999    777


Q ss_pred             HHHHHHh
Q 025360          178 TRDNLHN  184 (254)
Q Consensus       178 T~~~L~~  184 (254)
                      ..+|+..
T Consensus       647 L~~~f~~  653 (854)
T PLN02205        647 LADWFSP  653 (854)
T ss_pred             HHHHhCC
Confidence            7777754

>TIGR01106 ATPase-IIC_X-K sodium or proton efflux -- potassium uptake antiporter, P-type ATPase, alpha subunit

Probab=96.78  E-value=0.005  Score=64.49  Aligned_cols=92  Identities=21%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC------------------------cEEEec
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE------------------------RLIMRT  197 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~------------------------~lilr~  197 (254)
                      .+|+-|++.+.++.|+++|+++.++|||.    ........++.|+-.-.                        .+++.+
T Consensus       566 ~Dplr~~v~~aI~~l~~~Gi~v~~~TGd~----~~ta~~ia~~~gi~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~vi~G  641 (997)
T TIGR01106       566 IDPPRAAVPDAVGKCRSAGIKVIMVTGDH----PITAKAIAKGVGIISEGNETVEDIAARLNIPVSQVNPRDAKACVVHG  641 (997)
T ss_pred             cCCChHHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCCCCccchhhhhhhccccccccccccccceEEEh
Confidence            57999999999999999999999999999    56666677778883110                        134443


Q ss_pred             CCCC-------------------CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          198 AADK-------------------GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       198 ~~~~-------------------~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+-.                   ..-.+.-|..+-+.+++.|+ +++++||..+|..+-+
T Consensus       642 ~~l~~l~~~el~~~~~~~~~~VfaR~sPeqK~~IV~~lq~~g~-vv~~~GDG~ND~paLk  700 (997)
T TIGR01106       642 SDLKDMTSEQLDEILKYHTEIVFARTSPQQKLIIVEGCQRQGA-IVAVTGDGVNDSPALK  700 (997)
T ss_pred             HHhhhCCHHHHHHHHHhcCCEEEEECCHHHHHHHHHHHHHCCC-EEEEECCCcccHHHHh
Confidence            3210                   01123567777788888886 8899999999975544

Sequences from Blastocladiella emersonii (GP|6636502, GP|6636502 and PIR|T43025), C. elegans (GP|2315419, GP|6671808 and PIR|T31763) and Drosophila melanogaster (GP|7291424) score below trusted cutoff, apparently due to long branch length (excessive divergence from the last common ancestor) as evidenced by a phylogenetic tree. Experimental evidence is needed to determine whether these sequences represent ATPases with conserved function. Aside from fragments, other sequences between trusted and noise appear to be bacterial ATPases of unclear lineage, but most likely calcium pumps.

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=96.77  E-value=0.0037  Score=54.16  Aligned_cols=58  Identities=19%  Similarity=0.236  Sum_probs=42.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      +..|..||||||+...            |+            .   ..+...+.+|++.|++|+++|+++    +...+.
T Consensus         7 ~~lIFtDlD~TLl~~~------------ye------------~---~pA~pv~~el~d~G~~Vi~~SSKT----~aE~~~   55 (274)
T COG3769           7 PLLIFTDLDGTLLPHS------------YE------------W---QPAAPVLLELKDAGVPVILCSSKT----RAEMLY   55 (274)
T ss_pred             ceEEEEcccCcccCCC------------CC------------C---CccchHHHHHHHcCCeEEEeccch----HHHHHH
Confidence            4567789999999842            21            0   123456788999999999999999    666666


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .-+++|+++
T Consensus        56 l~~~l~v~~   64 (274)
T COG3769          56 LQKSLGVQG   64 (274)
T ss_pred             HHHhcCCCC
Confidence            666777763

>PRK14010 potassium-transporting ATPase subunit B; Provisional

Probab=96.77  E-value=0.0062  Score=61.09  Aligned_cols=82  Identities=17%  Similarity=0.229  Sum_probs=63.2

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++-|++.+.+++|++.|++++.+||-.    .......=++.|+..+   +-+-       .+.-|..+-+++++.| 
T Consensus       439 ~Dp~R~~a~e~I~~Lr~~GI~vvMiTGDn----~~TA~aIA~elGI~~v---~A~~-------~PedK~~iV~~lQ~~G-  503 (673)
T PRK14010        439 KDVIKDGLVERFRELREMGIETVMCTGDN----ELTAATIAKEAGVDRF---VAEC-------KPEDKINVIREEQAKG-  503 (673)
T ss_pred             ecCCcHHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCceE---EcCC-------CHHHHHHHHHHHHhCC-
Confidence            57999999999999999999999999988    5555556678899742   2111       2355777777888777 


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      ++++++||..||--+-.
T Consensus       504 ~~VaMtGDGvNDAPALa  520 (673)
T PRK14010        504 HIVAMTGDGTNDAPALA  520 (673)
T ss_pred             CEEEEECCChhhHHHHH
Confidence            57899999999975433

>TIGR01497 kdpB K+-transporting ATPase, B subunit

Probab=96.76  E-value=0.0059  Score=61.21  Aligned_cols=82  Identities=21%  Similarity=0.250  Sum_probs=63.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++-|++.+.++.|++.|+++.++||..    .......-+++|+..+   +-+-       .+.-|..+-+++++.| 
T Consensus       444 ~D~~Rp~a~eaI~~l~~~Gi~v~miTGD~----~~ta~~iA~~lGI~~v---~a~~-------~PedK~~~v~~lq~~g-  508 (675)
T TIGR01497       444 KDIVKGGIKERFAQLRKMGIKTIMITGDN----RLTAAAIAAEAGVDDF---IAEA-------TPEDKIALIRQEQAEG-  508 (675)
T ss_pred             cccchhHHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCEE---EcCC-------CHHHHHHHHHHHHHcC-
Confidence            57899999999999999999999999988    6666777788999642   2111       1244666677777766 


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      ..++++||..||..+-.
T Consensus       509 ~~VamvGDG~NDapAL~  525 (675)
T TIGR01497       509 KLVAMTGDGTNDAPALA  525 (675)
T ss_pred             CeEEEECCCcchHHHHH
Confidence            47999999999986654

One sequence is apparently mis-annotated in the primary literature, but properly annotated by TIGR.

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=96.62  E-value=0.0072  Score=48.24  Aligned_cols=82  Identities=16%  Similarity=0.153  Sum_probs=59.7

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR  222 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~  222 (254)
                      ...++.+.+.++.|++. +.|++.||-.    .....+.++-.|++. .. ++.+.+      +.-|..+.++|.+ .|.
T Consensus        29 Gklf~ev~e~iqeL~d~-V~i~IASgDr----~gsl~~lae~~gi~~-~r-v~a~a~------~e~K~~ii~eLkk-~~~   94 (152)
T COG4087          29 GKLFSEVSETIQELHDM-VDIYIASGDR----KGSLVQLAEFVGIPV-ER-VFAGAD------PEMKAKIIRELKK-RYE   94 (152)
T ss_pred             cEEcHhhHHHHHHHHHh-heEEEecCCc----chHHHHHHHHcCCce-ee-eecccC------HHHHHHHHHHhcC-CCc
Confidence            56888999999999999 9999999976    455556666789883 23 333322      2446666666665 456


Q ss_pred             EEEEEcCCcccccccc
Q 025360          223 IWGNIGDQWSDLQGEC  238 (254)
Q Consensus       223 i~~~IGDq~sDi~ga~  238 (254)
                      .+++|||..+|+.+-+
T Consensus        95 k~vmVGnGaND~laLr  110 (152)
T COG4087          95 KVVMVGNGANDILALR  110 (152)
T ss_pred             EEEEecCCcchHHHhh
Confidence            7889999999987655

>TIGR01647 ATPase-IIIA_H plasma-membrane proton-efflux P-type ATPase

Probab=96.56  E-value=0.0042  Score=63.16  Aligned_cols=92  Identities=17%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC--C-cEEEecCC-----------------CC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY--E-RLIMRTAA-----------------DK  201 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~--~-~lilr~~~-----------------~~  201 (254)
                      .+|+-|++.+.++.|++.|+++.++||..    ...+...-++.|+..-  . +.+..+.+                 .-
T Consensus       440 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~----~~tA~~IA~~lGI~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~vf  515 (755)
T TIGR01647       440 FDPPRHDTKETIERARHLGVEVKMVTGDH----LAIAKETARRLGLGTNIYTADVLLKGDNRDDLPSGELGEMVEDADGF  515 (755)
T ss_pred             cCCChhhHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCCCCcCHHHhcCCcchhhCCHHHHHHHHHhCCEE
Confidence            46899999999999999999999999998    5666666678899631  0 00000000                 00


Q ss_pred             CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          202 GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       202 ~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ..-.+.-|..+-+++++.| .+++++||..||..+-+
T Consensus       516 Ar~~Pe~K~~iV~~lq~~G-~~VamvGDGvNDapAL~  551 (755)
T TIGR01647       516 AEVFPEHKYEIVEILQKRG-HLVGMTGDGVNDAPALK  551 (755)
T ss_pred             EecCHHHHHHHHHHHHhcC-CEEEEEcCCcccHHHHH
Confidence            0112355777777888888 47999999999975544

This model describes the plasma membrane proton efflux P-type ATPase found in plants, fungi, protozoa, slime molds and archaea. The best studied representative is from yeast.

>PRK01122 potassium-transporting ATPase subunit B; Provisional

Probab=96.56  E-value=0.011  Score=59.39  Aligned_cols=82  Identities=21%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.+.+++|++.|+++..+||-.    .......=++.|++.+   +-+.       .+.-|..+-+++++.| 
T Consensus       443 ~D~~R~~~~eai~~Lr~~GI~vvMiTGDn----~~TA~aIA~elGId~v---~A~~-------~PedK~~iV~~lQ~~G-  507 (679)
T PRK01122        443 KDIVKPGIKERFAELRKMGIKTVMITGDN----PLTAAAIAAEAGVDDF---LAEA-------TPEDKLALIRQEQAEG-  507 (679)
T ss_pred             eccCchhHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCcEE---EccC-------CHHHHHHHHHHHHHcC-
Confidence            57889999999999999999999999988    5555566678899642   2111       1345777777788777 


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      ++++++||..||--+-.
T Consensus       508 ~~VaMtGDGvNDAPALa  524 (679)
T PRK01122        508 RLVAMTGDGTNDAPALA  524 (679)
T ss_pred             CeEEEECCCcchHHHHH
Confidence            57999999999965433

>TIGR01116 ATPase-IIA1_Ca sarco/endoplasmic reticulum calcium-translocating P-type ATPase

Probab=96.54  E-value=0.012  Score=61.21  Aligned_cols=92  Identities=23%  Similarity=0.276  Sum_probs=65.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc----EEEecCC-CC---------------
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER----LIMRTAA-DK---------------  201 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~----lilr~~~-~~---------------  201 (254)
                      .+|+.|++.+.++.|++.|+++.++||..    ...+....++.|+..-..    ..+.+.. +.               
T Consensus       535 ~Dplr~~v~e~I~~l~~aGI~v~miTGD~----~~tA~~ia~~~gi~~~~~~v~~~~~~g~~l~~~~~~~~~~~~~~~~v  610 (917)
T TIGR01116       535 LDPPRPEVADAIEKCRTAGIRVIMITGDN----KETAEAICRRIGIFSPDEDVTFKSFTGREFDEMGPAKQRAACRSAVL  610 (917)
T ss_pred             eCCCchhHHHHHHHHHHCCCEEEEecCCC----HHHHHHHHHHcCCCCCCccccceeeeHHHHhhCCHHHHHHhhhcCeE
Confidence            57999999999999999999999999998    667777778889853111    1222211 00               


Q ss_pred             -CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          202 -GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       202 -~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                       ....+..|..+-+.+++.| .+++++||..+|..+-+
T Consensus       611 ~ar~~P~~K~~iV~~lq~~g-~~va~iGDG~ND~~alk  647 (917)
T TIGR01116       611 FSRVEPSHKSELVELLQEQG-EIVAMTGDGVNDAPALK  647 (917)
T ss_pred             EEecCHHHHHHHHHHHHhcC-CeEEEecCCcchHHHHH
Confidence             0011344666666777666 47889999999997766

The calcium P-type ATPases have been characterized as Type IIA based on a phylogenetic analysis which distinguishes this group from the Type IIB PMCA calcium pump modelled by TIGR01517. A separate analysis divides Type IIA into sub-types, SERCA and PMR1, the latter of which is modelled by TIGR01522.

>PF05116 S6PP: Sucrose-6F-phosphate phosphohydrolase; InterPro: IPR006380 This family of sequences represent sucrose phosphate phosphohydrolase (SPP) from plants and cyanobacteria []

Probab=96.45  E-value=0.0043  Score=54.63  Aligned_cols=59  Identities=19%  Similarity=0.152  Sum_probs=39.4

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      +..++.|+|||+++..                          ...+....++++...+.++.++++|||+    .+...+
T Consensus         2 ~~ll~sDlD~Tl~~~~--------------------------~~~~~~l~~~l~~~~~~~~~~v~~TGRs----~~~~~~   51 (247)
T PF05116_consen    2 PRLLASDLDGTLIDGD--------------------------DEALARLEELLEQQARPEILFVYVTGRS----LESVLR   51 (247)
T ss_dssp             SEEEEEETBTTTBHCH--------------------------HHHHHHHHHHHHHHHCCGEEEEEE-SS-----HHHHHH
T ss_pred             CEEEEEECCCCCcCCC--------------------------HHHHHHHHHHHHHhhCCCceEEEECCCC----HHHHHH
Confidence            4678999999999321                          1122233344444457789999999999    788888


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .+++.+++.
T Consensus        52 ~~~~~~l~~   60 (247)
T PF05116_consen   52 LLREYNLPQ   60 (247)
T ss_dssp             HHHHCT-EE
T ss_pred             HHHhCCCCC
Confidence            899999874

SPP is a member of the Class IIB subfamily of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. SPP catalyzes the final step in the biosynthesis of sucrose, a critically important molecule for plants. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.; PDB: 1TJ5_A 2B1Q_A 1TJ4_A 1S2O_A 1U2T_A 2D2V_A 1TJ3_A 1U2S_A 2B1R_A 3GYG_B ....

>TIGR01523 ATPase-IID_K-Na potassium and/or sodium efflux P-type ATPase, fungal-type

Probab=96.38  E-value=0.011  Score=62.39  Aligned_cols=92  Identities=15%  Similarity=0.130  Sum_probs=66.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC----------CcEEEecCCCC----------
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY----------ERLIMRTAADK----------  201 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~----------~~lilr~~~~~----------  201 (254)
                      .+++-|++.+.++.|++.|+++.++||..    ...+...-++.|+..-          ...++.+....          
T Consensus       644 ~Dp~r~~v~~aI~~l~~aGIkv~MiTGD~----~~tA~~iA~~~Gi~~~~~~~~~~~~~~~~vitG~~l~~l~~~~l~~~  719 (1053)
T TIGR01523       644 YDPPRNESAGAVEKCHQAGINVHMLTGDF----PETAKAIAQEVGIIPPNFIHDRDEIMDSMVMTGSQFDALSDEEVDDL  719 (1053)
T ss_pred             ecCCchhHHHHHHHHHHCCCEEEEECCCC----HHHHHHHHHHcCCCCccccccccccccceeeehHHhhhcCHHHHHHH
Confidence            57999999999999999999999999998    5666666678898421          12344443210          


Q ss_pred             -------CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          202 -------GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       202 -------~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                             ..-.+.-|..+-+.+++.|+ +++++||..||..+-+
T Consensus       720 ~~~~~V~ar~sP~~K~~iV~~lq~~g~-~Vam~GDGvNDapaLk  762 (1053)
T TIGR01523       720 KALCLVIARCAPQTKVKMIEALHRRKA-FCAMTGDGVNDSPSLK  762 (1053)
T ss_pred             hhcCeEEEecCHHHHHHHHHHHHhcCC-eeEEeCCCcchHHHHH
Confidence                   01123557777778887775 6789999999975543

The Leishmania sequence (GP|3192903), which falls between trusted and noise in this model, may very well turn out to be an active potassium pump.

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=96.36  E-value=0.01  Score=50.62  Aligned_cols=70  Identities=13%  Similarity=0.142  Sum_probs=50.5

Q ss_pred             hhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc
Q 025360           95 VLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF  174 (254)
Q Consensus        95 ~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~  174 (254)
                      .+...+++.+|+||||||++....-           +        ....-.-|++.+||+.+.+ .|.|++-|+..    
T Consensus        15 ~~~~~~kklLVLDLDeTLvh~~~~~-----------~--------~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~----   70 (195)
T TIGR02245        15 NPPREGKKLLVLDIDYTLFDHRSPA-----------E--------TGEELMRPYLHEFLTSAYE-DYDIVIWSATS----   70 (195)
T ss_pred             CCCCCCCcEEEEeCCCceEcccccC-----------C--------CceEEeCCCHHHHHHHHHh-CCEEEEEecCC----
Confidence            3445678999999999999752100           0        1123467999999999998 59999999998    


Q ss_pred             HHHHHHHHHhCCCC
Q 025360          175 GQVTRDNLHNQGFV  188 (254)
Q Consensus       175 r~~T~~~L~~~G~~  188 (254)
                      ..-.+..|..+|+.
T Consensus        71 ~~ya~~~l~~l~~~   84 (195)
T TIGR02245        71 MKWIEIKMTELGVL   84 (195)
T ss_pred             HHHHHHHHHHhccc
Confidence            45555666666653

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>KOG1618 consensus Predicted phosphatase [General function prediction only]

Probab=96.32  E-value=0.016  Score=52.81  Aligned_cols=64  Identities=14%  Similarity=0.225  Sum_probs=48.5

Q ss_pred             CCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC----CCeEEEEeCCCccc
Q 025360           98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES----GLKVILVTGRDEET  173 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~----G~~i~~vTgR~~e~  173 (254)
                      ....-++.|||||.|+-.                           ..++|++.+.++.|..+    .++.+|+||-.+-.
T Consensus        32 s~~~fgfafDIDGVL~RG---------------------------~~~i~~~~~Alr~L~~~~g~lkIP~vfLTNGGg~~   84 (389)
T KOG1618|consen   32 SPPTFGFAFDIDGVLFRG---------------------------HRPIPGALKALRRLVDNQGQLKIPFVFLTNGGGIL   84 (389)
T ss_pred             CCCceeEEEecccEEEec---------------------------CCCCcchHHHHHHHHhcCCCeeccEEEEeCCCCcc
Confidence            345678999999988863                           56999999999999988    89999999986323


Q ss_pred             cHHHHHHHHHhCCCC
Q 025360          174 FGQVTRDNLHNQGFV  188 (254)
Q Consensus       174 ~r~~T~~~L~~~G~~  188 (254)
                      .+..+.+.=+.+|+.
T Consensus        85 E~~rA~~lS~~Lgv~   99 (389)
T KOG1618|consen   85 ESSRAQELSALLGVE   99 (389)
T ss_pred             hhhHHHHHHHhhCCc
Confidence            344444444566775

>TIGR01524 ATPase-IIIB_Mg magnesium-translocating P-type ATPase

Probab=96.29  E-value=0.016  Score=59.86  Aligned_cols=90  Identities=21%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CC----------------CCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DK----------------GKN  204 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~----------------~kp  204 (254)
                      .+++-|++.+.++.|++.|+++.++||-.    ...+...-++.|+.. .+ ++.+.+ +.                ..-
T Consensus       513 ~Dp~R~~~~~aI~~l~~aGI~vvmiTGD~----~~tA~aIA~~lGI~~-~~-v~~g~~l~~~~~~el~~~~~~~~vfAr~  586 (867)
T TIGR01524       513 LDPPKESTKEAIAALFKNGINVKVLTGDN----EIVTARICQEVGIDA-ND-FLLGADIEELSDEELARELRKYHIFARL  586 (867)
T ss_pred             eCCCchhHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCC-CC-eeecHhhhhCCHHHHHHHhhhCeEEEEC
Confidence            57899999999999999999999999987    455555667889962 22 222211 00                001


Q ss_pred             CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+.-|..+-+.+++.|+ +++++||..||.-+-+
T Consensus       587 ~Pe~K~~iV~~lq~~G~-vVam~GDGvNDapALk  619 (867)
T TIGR01524       587 TPMQKSRIIGLLKKAGH-TVGFLGDGINDAPALR  619 (867)
T ss_pred             CHHHHHHHHHHHHhCCC-EEEEECCCcccHHHHH
Confidence            23567777788888874 7889999999976554

The magnesium ATPases have been classified as type IIIB by a phylogenetic analysis.

>PRK10517 magnesium-transporting ATPase MgtA; Provisional

Probab=96.27  E-value=0.012  Score=61.04  Aligned_cols=90  Identities=21%  Similarity=0.246  Sum_probs=65.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CC----------------CCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DK----------------GKN  204 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~----------------~kp  204 (254)
                      .+|+-|++.+.++.|++.|+++.++||-.    ...+...-++.|+.. ++ ++.+.+ +.                ..-
T Consensus       548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~----~~tA~~IA~~lGI~~-~~-v~~G~el~~l~~~el~~~~~~~~VfAr~  621 (902)
T PRK10517        548 LDPPKETTAPALKALKASGVTVKILTGDS----ELVAAKVCHEVGLDA-GE-VLIGSDIETLSDDELANLAERTTLFARL  621 (902)
T ss_pred             hCcchhhHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHHcCCCc-cC-ceeHHHHHhCCHHHHHHHHhhCcEEEEc
Confidence            57899999999999999999999999988    555566667889962 22 222221 10                011


Q ss_pred             CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+.-|..+-+++++.| .+++++||..||.-+-+
T Consensus       622 sPe~K~~IV~~Lq~~G-~vVam~GDGvNDaPALk  654 (902)
T PRK10517        622 TPMHKERIVTLLKREG-HVVGFMGDGINDAPALR  654 (902)
T ss_pred             CHHHHHHHHHHHHHCC-CEEEEECCCcchHHHHH
Confidence            2456777788888877 57899999999976544

>PRK15122 magnesium-transporting ATPase; Provisional

Probab=96.18  E-value=0.027  Score=58.53  Aligned_cols=90  Identities=22%  Similarity=0.205  Sum_probs=64.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CC----------------CCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DK----------------GKN  204 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~----------------~kp  204 (254)
                      .+|+-|++.+.++.|++.|+++.++||-.    ...+...-++.|+.. .+ ++.+.+ +.                ..-
T Consensus       548 ~Dp~R~~a~~aI~~l~~aGI~v~miTGD~----~~tA~aIA~~lGI~~-~~-vi~G~el~~~~~~el~~~v~~~~VfAr~  621 (903)
T PRK15122        548 LDPPKESAAPAIAALRENGVAVKVLTGDN----PIVTAKICREVGLEP-GE-PLLGTEIEAMDDAALAREVEERTVFAKL  621 (903)
T ss_pred             cCccHHHHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCCC-CC-ccchHhhhhCCHHHHHHHhhhCCEEEEe
Confidence            57899999999999999999999999988    555556667789962 22 222221 10                001


Q ss_pred             CcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          205 AVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       205 ~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+.-|..+-+.+++.| .+++++||..||.-+-+
T Consensus       622 sPe~K~~iV~~Lq~~G-~vVamtGDGvNDaPALk  654 (903)
T PRK15122        622 TPLQKSRVLKALQANG-HTVGFLGDGINDAPALR  654 (903)
T ss_pred             CHHHHHHHHHHHHhCC-CEEEEECCCchhHHHHH
Confidence            2456777788888877 57899999999975544

>KOG0202 consensus Ca2+ transporting ATPase [Inorganic ion transport and metabolism]

Probab=96.09  E-value=0.029  Score=56.81  Aligned_cols=92  Identities=18%  Similarity=0.258  Sum_probs=70.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc----EEEecCC-CC----------C----
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER----LIMRTAA-DK----------G----  202 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~----lilr~~~-~~----------~----  202 (254)
                      .+||-|++.+.++.+++.|+.|..+||-.    .+..+..-++.|+...++    ..+++.. +.          +    
T Consensus       582 ~DPPR~ev~~ai~~c~~aGIrV~mITGD~----~~TA~AI~r~iGi~~~~ed~~~~~~TG~efD~ls~~~~~~~~~~~~v  657 (972)
T KOG0202|consen  582 LDPPRPEVADAIELCRQAGIRVIMITGDN----KETAEAIAREIGIFSEDEDVSSMALTGSEFDDLSDEELDDAVRRVLV  657 (972)
T ss_pred             cCCCchhHHHHHHHHHHcCCEEEEEcCCC----HHHHHHHHHHhCCCcCCccccccccchhhhhcCCHHHHHHHhhcceE
Confidence            58999999999999999999999999988    666667778889976544    3444432 11          0    


Q ss_pred             --CCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          203 --KNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       203 --kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                        .-.+..|..+-+.|++.| .++++-||..||--+-+
T Consensus       658 FaR~~P~HK~kIVeaLq~~g-eivAMTGDGVNDApALK  694 (972)
T KOG0202|consen  658 FARAEPQHKLKIVEALQSRG-EVVAMTGDGVNDAPALK  694 (972)
T ss_pred             EEecCchhHHHHHHHHHhcC-CEEEecCCCccchhhhh
Confidence              112567888888998877 79999999999976554

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=95.86  E-value=0.061  Score=54.93  Aligned_cols=100  Identities=18%  Similarity=0.243  Sum_probs=74.3

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      .|.-++.+=+||++.--.        +               -.+++.|++...+..|++.|++++++||-.    +...
T Consensus       701 ~g~tvv~v~vn~~l~gv~--------~---------------l~D~vr~~a~~av~~Lk~~Gi~v~mLTGDn----~~aA  753 (951)
T KOG0207|consen  701 KGQTVVYVAVNGQLVGVF--------A---------------LEDQVRPDAALAVAELKSMGIKVVMLTGDN----DAAA  753 (951)
T ss_pred             cCceEEEEEECCEEEEEE--------E---------------eccccchhHHHHHHHHHhcCceEEEEcCCC----HHHH
Confidence            567889999999887542        1               147899999999999999999999999988    5555


Q ss_pred             HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccc
Q 025360          179 RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQG  236 (254)
Q Consensus       179 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~g  236 (254)
                      ...-++.|++.   ++ ...    +  +.-|.+.-++|++.| ..+++|||..||--+
T Consensus       754 ~svA~~VGi~~---V~-aev----~--P~~K~~~Ik~lq~~~-~~VaMVGDGINDaPA  800 (951)
T KOG0207|consen  754 RSVAQQVGIDN---VY-AEV----L--PEQKAEKIKEIQKNG-GPVAMVGDGINDAPA  800 (951)
T ss_pred             HHHHHhhCcce---EE-ecc----C--chhhHHHHHHHHhcC-CcEEEEeCCCCccHH
Confidence            55556778642   22 211    1  234677777888776 678999999998533

>PF02358 Trehalose_PPase: Trehalose-phosphatase; InterPro: IPR003337 Trehalose-phosphatases 3

Probab=95.84  E-value=0.013  Score=50.87  Aligned_cols=48  Identities=25%  Similarity=0.215  Sum_probs=29.0

Q ss_pred             EEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHH
Q 025360          105 ILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQV  177 (254)
Q Consensus       105 IfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~  177 (254)
                      +||.||||..-.+.                     ...+.+.+++.++|+.|.+.. ..++++|||+    ++.
T Consensus         1 ~lDyDGTL~p~~~~---------------------p~~~~~~~~~~~~L~~La~~~~~~v~IvSGR~----~~~   49 (235)
T PF02358_consen    1 FLDYDGTLAPIVDD---------------------PDAAVPPPELRELLRALAADPNNTVAIVSGRS----LDD   49 (235)
T ss_dssp             EEE-TTTSS---S----------------------GGG----HHHHHHHHHHHHHSE--EEEE-SS-----HHH
T ss_pred             CcccCCccCCCCCC---------------------ccccCCCHHHHHHHHHHhccCCCEEEEEEeCC----HHH
Confidence            58999999975310                     124678999999999999884 4899999999    555

1.3.12 from EC catalyse the de-phosphorylation of trehalose-6-phosphate to trehalose and orthophosphate. Trehalose is a common disaccharide of bacteria, fungi and invertebrates that appears to play a major role in desiccation tolerance. A pathway for trehalose biosynthesis may also exist in plants []. The trehalose-phosphatase signature is found in the C terminus of trehalose-6-phosphate synthase 2.4.1.15 from EC adjacent to the trehalose-6-phosphate synthase domain (see IPR001830 from INTERPRO). It would appear that the two equivalent genes in the Escherichia coli otsBA operon: otsA, the trehalose-6-phosphate synthase and otsB, trehalose-phosphatase (this family) have undergone gene fusion in most eukaryotes [].; GO: 0003824 catalytic activity, 0005992 trehalose biosynthetic process; PDB: 1U02_A.

>PLN03063 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=95.81  E-value=0.023  Score=58.17  Aligned_cols=67  Identities=10%  Similarity=0.060  Sum_probs=49.9

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~  177 (254)
                      .++.+++||.||||..-.+.         +-+         .....+-|++.++|+.|.+. +..|++||||+    ++.
T Consensus       505 a~~rll~LDyDGTL~~~~~~---------~~~---------p~~a~p~~~l~~~L~~L~~d~~~~V~IvSGR~----~~~  562 (797)
T PLN03063        505 SNNRLLILGFYGTLTEPRNS---------QIK---------EMDLGLHPELKETLKALCSDPKTTVVVLSRSG----KDI  562 (797)
T ss_pred             ccCeEEEEecCccccCCCCC---------ccc---------cccCCCCHHHHHHHHHHHcCCCCEEEEEeCCC----HHH
Confidence            45688999999999953210         000         01356789999999999876 78999999999    888


Q ss_pred             HHHHHHhCCC
Q 025360          178 TRDNLHNQGF  187 (254)
Q Consensus       178 T~~~L~~~G~  187 (254)
                      .++||...++
T Consensus       563 L~~~~~~~~l  572 (797)
T PLN03063        563 LDKNFGEYNI  572 (797)
T ss_pred             HHHHhCCCCC
Confidence            8888875443

>PLN03064 alpha,alpha-trehalose-phosphate synthase (UDP-forming); Provisional

Probab=95.61  E-value=0.022  Score=59.00  Aligned_cols=73  Identities=14%  Similarity=0.086  Sum_probs=51.2

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~  177 (254)
                      .++..++||.||||..-.+.-            .....-+....+.+-|+++++|+.|.+. +..|++||||+    ++.
T Consensus       589 a~~RLlfLDyDGTLap~~~~P------------~~~~~~~~~~~a~p~p~l~~~L~~L~~dp~n~VaIVSGR~----~~~  652 (934)
T PLN03064        589 SNNRLLILGFNATLTEPVDTP------------GRRGDQIKEMELRLHPELKEPLRALCSDPKTTIVVLSGSD----RSV  652 (934)
T ss_pred             ccceEEEEecCceeccCCCCc------------ccccccccccccCCCHHHHHHHHHHHhCCCCeEEEEeCCC----HHH
Confidence            456889999999999742110            0000001111356779999999999876 78999999999    888


Q ss_pred             HHHHHHhCCC
Q 025360          178 TRDNLHNQGF  187 (254)
Q Consensus       178 T~~~L~~~G~  187 (254)
                      .++||...++
T Consensus       653 Le~~fg~~~L  662 (934)
T PLN03064        653 LDENFGEFDM  662 (934)
T ss_pred             HHHHhCCCCc
Confidence            8888876544

>PF06189 5-nucleotidase: 5'-nucleotidase; InterPro: IPR010394 This family consists of both eukaryotic and prokaryotic 5'-nucleotidase sequences (3

Probab=95.38  E-value=0.037  Score=49.06  Aligned_cols=127  Identities=19%  Similarity=0.169  Sum_probs=80.6

Q ss_pred             CCCceEEEecCCccccch--hhhhhhccCCCCCChHHHHHHHHhCCC-----CCchHHHHHHHHHHHC------CCeEEE
Q 025360           99 DGMDAWILDVDDTCISNV--YYYKGKRYGCDPYDPAGFRAWALKGGC-----PAIPGVLVLFNKLIES------GLKVIL  165 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~--~~~~~~~~g~~~~~~~~~~~~~~~~~~-----~~~pg~~ell~~L~~~------G~~i~~  165 (254)
                      +..--|.||-|++|.+-+  ..|.+.  |     -+.|.+.......     =|+..-++-|.+|+++      =+++++
T Consensus       119 ~~qlRIAFDgDaVLfsDesE~vy~~~--G-----L~~F~~~E~~~a~~Pl~~GP~~~fl~~L~~lQ~~~~~~~~piRtal  191 (264)
T PF06189_consen  119 DDQLRIAFDGDAVLFSDESERVYQEQ--G-----LEAFHEHEKENADKPLPEGPFKDFLKKLSKLQKKFPPENSPIRTAL  191 (264)
T ss_pred             CCceEEEEcCCeEeecCcchHhHHhc--c-----HHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence            345679999999999754  233332  2     1223333222222     2445556666677755      368999


Q ss_pred             EeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEE
Q 025360          166 VTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFK  245 (254)
Q Consensus       166 vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fk  245 (254)
                      ||.|. .-..+-.++.|+.-|+..-+.++|.+-+         |..+.+++     +.-+.++||..=+.++..+.-+..
T Consensus       192 VTAR~-apah~RvI~TLr~Wgv~vDEafFLgG~~---------K~~vL~~~-----~phIFFDDQ~~H~~~a~~~vps~h  256 (264)
T PF06189_consen  192 VTARS-APAHERVIRTLRSWGVRVDEAFFLGGLP---------KGPVLKAF-----RPHIFFDDQDGHLESASKVVPSGH  256 (264)
T ss_pred             EEcCC-CchhHHHHHHHHHcCCcHhHHHHhCCCc---------hhHHHHhh-----CCCEeecCchhhhhHhhcCCCEEe
Confidence            99999 5445778889999999843345555532         34433333     346789999999988886666666


Q ss_pred             eC
Q 025360          246 LP  247 (254)
Q Consensus       246 lP  247 (254)
                      +|
T Consensus       257 VP  258 (264)
T PF06189_consen  257 VP  258 (264)
T ss_pred             cc
Confidence            66

1.3.5 from EC).; GO: 0000166 nucleotide binding, 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0009117 nucleotide metabolic process, 0005737 cytoplasm

>COG0474 MgtA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=95.36  E-value=0.056  Score=56.27  Aligned_cols=92  Identities=21%  Similarity=0.225  Sum_probs=68.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC--cEEEecCCCCC-----------------
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE--RLIMRTAADKG-----------------  202 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~--~lilr~~~~~~-----------------  202 (254)
                      .+||-+++.+.++.|++.|+++..+||-.    .......=++.|+..-.  .+++.+.+-..                 
T Consensus       545 ~Dppr~~v~~aI~~l~~AGI~v~MiTGD~----~~TA~aIa~~~Gi~~~~~~~~vi~G~el~~l~~~el~~~~~~~~VfA  620 (917)
T COG0474         545 EDPPREDVKEAIEELREAGIKVWMITGDH----VETAIAIAKECGIEAEAESALVIDGAELDALSDEELAELVEELSVFA  620 (917)
T ss_pred             cCCCCccHHHHHHHHHHCCCcEEEECCCC----HHHHHHHHHHcCCCCCCCceeEeehHHhhhcCHHHHHHHhhhCcEEE
Confidence            58999999999999999999999999987    45555555678986432  33655543110                 


Q ss_pred             CCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          203 KNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       203 kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .-.+..|..+-+.+++.| .++++.||..||.-+-+
T Consensus       621 RvsP~qK~~IV~~lq~~g-~vVamtGDGvNDapALk  655 (917)
T COG0474         621 RVSPEQKARIVEALQKSG-HVVAMTGDGVNDAPALK  655 (917)
T ss_pred             EcCHHHHHHHHHHHHhCC-CEEEEeCCCchhHHHHH
Confidence            112466788888888887 58899999999985544

>TIGR01494 ATPase_P-type ATPase, P-type (transporting), HAD superfamily, subfamily IC

Probab=95.21  E-value=0.085  Score=50.97  Aligned_cols=79  Identities=22%  Similarity=0.302  Sum_probs=58.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.+.++.|++.|+++.++||..    +..+...=++.|+  +.+           -.+..|..+-+.+++.| 
T Consensus       345 ~d~lr~~~~~~i~~l~~~gi~~~~ltGD~----~~~a~~ia~~lgi--~~~-----------~~p~~K~~~v~~l~~~g-  406 (499)
T TIGR01494       345 EDPLRDDAKETISELREAGIRVIMLTGDN----VLTAKAIAKELGI--FAR-----------VTPEEKAALVEALQKKG-  406 (499)
T ss_pred             cCCCchhHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcCc--eec-----------cCHHHHHHHHHHHHHCC-
Confidence            46899999999999999999999999998    4444444455676  100           12356766667777777 


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      ..++++||..+|..+-.
T Consensus       407 ~~v~~vGDg~nD~~al~  423 (499)
T TIGR01494       407 RVVAMTGDGVNDAPALK  423 (499)
T ss_pred             CEEEEECCChhhHHHHH
Confidence            56889999999985544

The crystal structure of one calcium-pumping ATPase and an analysis of the fold of the catalytic domain of the P-type ATPases have been published. These reveal that the catalytic core of these enzymes is a haloacid dehalogenase(HAD)-type aspartate-nucleophile hydrolase. The location of the ATP-binding loop in between the first and second HAD conserved catalytic motifs defines these enzymes as members of subfamily I of the HAD superfamily (see also TIGR01493, TIGR01509, TIGR01549, TIGR01544 and TIGR01545). Based on these classifications, the P-type ATPase _superfamily_ corresponds to the IC subfamily of the HAD superfamily.

>KOG2134 consensus Polynucleotide kinase 3' phosphatase [Replication, recombination and repair]

Probab=94.97  E-value=0.064  Score=50.02  Aligned_cols=117  Identities=21%  Similarity=0.254  Sum_probs=67.7

Q ss_pred             CCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc------
Q 025360           98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE------  171 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~------  171 (254)
                      ..+.+.+.||+||||++|.+-..   |   +-++..|        ....|.+..=++.|.+.|++++|-|+..+      
T Consensus        72 ~~~~K~i~FD~dgtlI~t~sg~v---f---~~~~~dw--------~~l~~~vp~Klktl~~~g~~l~iftnq~~i~r~~~  137 (422)
T KOG2134|consen   72 NGGSKIIMFDYDGTLIDTKSGKV---F---PKGSMDW--------RILFPEVPSKLKTLYQDGIKLFIFTNQNGIARGKL  137 (422)
T ss_pred             CCCcceEEEecCCceeecCCcce---e---eccCccc--------eeeccccchhhhhhccCCeEEEEEecccccccCcc
Confidence            35678899999999999863110   0   1112222        34667777778999999999999999863      


Q ss_pred             --cccHHHHHHHHHhCCCCCCCcEEEecC-CCCCCCCcccHHHHHHHHHHcCCcE----EEEEcCCc
Q 025360          172 --ETFGQVTRDNLHNQGFVGYERLIMRTA-ADKGKNAVTYKSEIRKQLLEEGYRI----WGNIGDQW  231 (254)
Q Consensus       172 --e~~r~~T~~~L~~~G~~~~~~lilr~~-~~~~kp~~~yK~~~r~~l~~~Gy~i----~~~IGDq~  231 (254)
                        +..+.-....+.++|+|  ..++...- +.-+||..-- -.....+...+++|    ..++||-.
T Consensus       138 ~~~~f~~Ki~~i~anl~vP--i~~~~A~~~~~yRKP~tGM-we~~~~~~nd~~~Isek~s~fvgdaa  201 (422)
T KOG2134|consen  138 ELEEFKKKIKAIVANLGVP--IQLLAAIIKGKYRKPSTGM-WEFLKRLENDSVEISEKASIFVGDAA  201 (422)
T ss_pred             hHHHHHHHHHHHHHhcCCc--eEEeeeccCCcccCcchhH-HHHHHHHhhccceeeechhhhhhhhc
Confidence              12233345566778888  23332221 2334553211 11223344556654    44667654

>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3

Probab=94.87  E-value=0.044  Score=52.54  Aligned_cols=101  Identities=19%  Similarity=0.241  Sum_probs=55.8

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC------CCCCCCcEEEecCC----------------CCC
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ------GFVGYERLIMRTAA----------------DKG  202 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~------G~~~~~~lilr~~~----------------~~~  202 (254)
                      .-|....+|+.|++.|.++|++||.+ -..-+.....|--.      .+..+|++++.+..                ..+
T Consensus       184 k~~~l~~~L~~lr~~GKklFLiTNS~-~~yt~~~M~yl~g~~~~~~~dW~dlFDvVIv~A~KP~FF~~~~pfr~vd~~~g  262 (448)
T PF05761_consen  184 KDPKLPPWLERLRSAGKKLFLITNSP-FDYTNAVMSYLLGPFLGEDPDWRDLFDVVIVDARKPGFFTEGRPFREVDTETG  262 (448)
T ss_dssp             --CHHHHHHHHHHCCT-EEEEE-SS--HHHHHHHHHHHCGCCSSTTT-GGGCECEEEES--CCHHHCT---EEEEETTTS
T ss_pred             CCchHHHHHHHHHhcCceEEEecCCC-CchhhhhhhhccCCCCCCCCChhhheeEEEEcCCCCcccCCCCceEEEECCCC
Confidence            35788899999999999999999999 55445555555433      34456777775432                001


Q ss_pred             -----------CCCcccHHHHHHHHH-HcCC--cEEEEEcCCc-ccccccc--cCCcEEEe
Q 025360          203 -----------KNAVTYKSEIRKQLL-EEGY--RIWGNIGDQW-SDLQGEC--TGNRTFKL  246 (254)
Q Consensus       203 -----------kp~~~yK~~~r~~l~-~~Gy--~i~~~IGDq~-sDi~ga~--~g~r~fkl  246 (254)
                                 ++..+|..+--..+. -.|.  ..|++|||+. +|+...+  .|-||+.+
T Consensus       263 ~l~~~~~~~~l~~g~vY~gGn~~~l~~ll~~~g~~VLY~GDhi~~Di~~~k~~~gWrT~~I  323 (448)
T PF05761_consen  263 KLKWGKYVGPLEKGKVYSGGNWDQLHKLLGWRGKEVLYFGDHIYGDILKSKKRHGWRTAAI  323 (448)
T ss_dssp             SEECS---SS--TC-EEEE--HHHHHHHCT--GGGEEEEESSTTTTHHHHHHHH-SEEEEE
T ss_pred             ccccccccccccCCCEeecCCHHHHHHHHccCCCeEEEECCchhhhhhhhccccceEEEEE
Confidence                       111233311111121 1222  3589999998 6998876  57777765

1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....

>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B

Probab=94.77  E-value=0.041  Score=39.05  Aligned_cols=44  Identities=20%  Similarity=0.238  Sum_probs=31.3

Q ss_pred             CCCCcccHHHHHHHHHHcCC--cEEEEEcCC-cccccccc-cCCcEEEeCC
Q 025360          202 GKNAVTYKSEIRKQLLEEGY--RIWGNIGDQ-WSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       202 ~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq-~sDi~ga~-~g~r~fklPN  248 (254)
                      +||.+   ..+...+...+.  ..+++|||+ .+|+.+|+ +|.+++.+..
T Consensus         3 gKP~p---~~~~~a~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~ilV~t   50 (75)
T PF13242_consen    3 GKPSP---GMLEQALKRLGVDPSRCVMVGDSLETDIEAAKAAGIDTILVLT   50 (75)
T ss_dssp             STTSH---HHHHHHHHHHTSGGGGEEEEESSTTTHHHHHHHTTSEEEEESS
T ss_pred             CCCcH---HHHHHHHHHcCCCHHHEEEEcCCcHhHHHHHHHcCCcEEEECC
Confidence            45544   333445555554  359999999 99999998 7888887754

...

>TIGR01657 P-ATPase-V P-type ATPase of unknown pump specificity (type V)

Probab=94.56  E-value=0.1  Score=55.18  Aligned_cols=43  Identities=16%  Similarity=0.327  Sum_probs=36.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV  188 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~  188 (254)
                      .+++.|++.+.++.|++.|+++.++||..    .......-++.|+-
T Consensus       654 ~d~lr~~~~~~I~~l~~agi~v~miTGD~----~~TA~~iA~~~gii  696 (1054)
T TIGR01657       654 ENPLKPDTKEVIKELKRASIRTVMITGDN----PLTAVHVARECGIV  696 (1054)
T ss_pred             ecCCCccHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCC
Confidence            57899999999999999999999999998    44445555677883

These P-type ATPases form a distinct clade but the substrate of their pumping activity has yet to be determined. This clade has been designated type V in.

>COG4229 Predicted enolase-phosphatase [Energy production and conversion]

Probab=94.47  E-value=0.14  Score=43.30  Aligned_cols=93  Identities=14%  Similarity=0.162  Sum_probs=56.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC---C----CCCCCcEEEecCCCCCCCCcccHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ---G----FVGYERLIMRTAADKGKNAVTYKSEIRK  214 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~---G----~~~~~~lilr~~~~~~kp~~~yK~~~r~  214 (254)
                      +++.+|.+.+.+++.+++|+++++-|+-+ -   .+..-.+...   .    |++|++.-.   +.++- ...|-.    
T Consensus       101 kahlypDav~~ik~wk~~g~~vyiYSSGS-V---~AQkL~Fghs~agdL~~lfsGyfDtti---G~KrE-~~SY~k----  168 (229)
T COG4229         101 KAHLYPDAVQAIKRWKALGMRVYIYSSGS-V---KAQKLFFGHSDAGDLNSLFSGYFDTTI---GKKRE-SQSYAK----  168 (229)
T ss_pred             ccccCHhHHHHHHHHHHcCCcEEEEcCCC-c---hhHHHhhcccccccHHhhhcceeeccc---ccccc-chhHHH----
Confidence            67899999999999999999999999887 2   2211111110   1    223333211   11110 112222    


Q ss_pred             HHHHcCC--cEEEEEcCCcccccccc-cCCcEEEe
Q 025360          215 QLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       215 ~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      -...-|.  ..++.+.|...-+.+|. +|+++..+
T Consensus       169 Ia~~iGl~p~eilFLSDn~~EL~AA~~vGl~t~l~  203 (229)
T COG4229         169 IAGDIGLPPAEILFLSDNPEELKAAAGVGLATGLA  203 (229)
T ss_pred             HHHhcCCCchheEEecCCHHHHHHHHhcchheeee
Confidence            2233443  45899999999998887 78888776

>PLN02645 phosphoglycolate phosphatase

Probab=93.96  E-value=0.024  Score=51.59  Aligned_cols=89  Identities=17%  Similarity=0.070  Sum_probs=49.9

Q ss_pred             HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCC----CCCCCcccHHHHHHHHHHcCCc--EEE
Q 025360          152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAAD----KGKNAVTYKSEIRKQLLEEGYR--IWG  225 (254)
Q Consensus       152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~----~~kp~~~yK~~~r~~l~~~Gy~--i~~  225 (254)
                      ..+.|+.++-.++++||++ ....  ....+...|...++..+....+.    -+||.+   ......++..|.+  .++
T Consensus       178 a~~~l~~~~g~~~i~tn~d-~~~~--~~~~~~~~g~g~~~~~i~~~~~~~~~~~gKP~p---~~~~~a~~~~~~~~~~~~  251 (311)
T PLN02645        178 ATLCIRENPGCLFIATNRD-AVTH--LTDAQEWAGAGSMVGAIKGSTEREPLVVGKPST---FMMDYLANKFGIEKSQIC  251 (311)
T ss_pred             HHHHHhcCCCCEEEEeCCC-CCCC--CCCCCCccchHHHHHHHHHHhCCCcccCCCChH---HHHHHHHHHcCCCcccEE
Confidence            3445554444688999998 3220  11122333443333333222221    136544   3333345555544  599


Q ss_pred             EEcCCc-ccccccc-cCCcEEEe
Q 025360          226 NIGDQW-SDLQGEC-TGNRTFKL  246 (254)
Q Consensus       226 ~IGDq~-sDi~ga~-~g~r~fkl  246 (254)
                      +|||+. +|+.+|+ +|.+++.+
T Consensus       252 ~VGD~~~~Di~~A~~aG~~~ilV  274 (311)
T PLN02645        252 MVGDRLDTDILFGQNGGCKTLLV  274 (311)
T ss_pred             EEcCCcHHHHHHHHHcCCCEEEE
Confidence            999998 9999998 78888776

>KOG2470 consensus Similar to IMP-GMP specific 5'-nucleotidase [Nucleotide transport and metabolism]

Probab=93.88  E-value=0.12  Score=47.71  Aligned_cols=27  Identities=30%  Similarity=0.496  Sum_probs=24.4

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      .-.|..+.++++|+++|.+++++||.+
T Consensus       240 ~r~~ql~~fl~kL~~~GKklFLiTNSP  266 (510)
T KOG2470|consen  240 ERNPQLLAFLRKLKDHGKKLFLITNSP  266 (510)
T ss_pred             hccHHHHHHHHHHHHhcCcEEEEeCCc
Confidence            345788999999999999999999999

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=93.49  E-value=1.1  Score=43.31  Aligned_cols=118  Identities=17%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      .+..+++.|+|+|+||--..  ..+.+..+-...        ..+..+++..-.+++..|+++|+-++++|-.. +   .
T Consensus       218 ~g~~kK~LVLDLDNTLWGGV--IGedGv~GI~Ls--------~~~~G~~fk~fQ~~Ik~l~kqGVlLav~SKN~-~---~  283 (574)
T COG3882         218 SGKSKKALVLDLDNTLWGGV--IGEDGVDGIRLS--------NSAEGEAFKTFQNFIKGLKKQGVLLAVCSKNT-E---K  283 (574)
T ss_pred             hCcccceEEEecCCcccccc--cccccccceeec--------CCCCchhHHHHHHHHHHHHhccEEEEEecCCc-h---h
Confidence            46678999999999997542  111111110010        11345778888899999999999999999888 3   4


Q ss_pred             HHHHHHHhCCCCCCCcEEEecCCC-CCCCCcccH-HHHHHHHHH--cCCcEEEEEcCCccc
Q 025360          177 VTRDNLHNQGFVGYERLIMRTAAD-KGKNAVTYK-SEIRKQLLE--EGYRIWGNIGDQWSD  233 (254)
Q Consensus       177 ~T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~yK-~~~r~~l~~--~Gy~i~~~IGDq~sD  233 (254)
                      ...+-++++     .+.+++.++. ..+-.-.-| +.+|+-..+  .|.+-.++++|++.-
T Consensus       284 da~evF~kh-----p~MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~E  339 (574)
T COG3882         284 DAKEVFRKH-----PDMILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAE  339 (574)
T ss_pred             hHHHHHhhC-----CCeEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHH
Confidence            444444443     2456665541 111000112 334444444  556678899999853

>PF10307 DUF2410: Hypothetical protein (DUF2410); InterPro: IPR018812 This entry represents a family of proteins conserved in fungi whose function is not known

Probab=93.06  E-value=0.76  Score=39.27  Aligned_cols=91  Identities=15%  Similarity=0.249  Sum_probs=67.3

Q ss_pred             CchHHHHHHHHH-HHCCCeEEEEeCCCcc-ccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH--cC
Q 025360          145 AIPGVLVLFNKL-IESGLKVILVTGRDEE-TFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE--EG  220 (254)
Q Consensus       145 ~~pg~~ell~~L-~~~G~~i~~vTgR~~e-~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~--~G  220 (254)
                      ....++++.+.- ++..--.+++|||. | ...+...+.|...|+. ++.++|++.+....+...||......+..  ..
T Consensus        55 WNe~Iv~la~~S~~~~dtltVLLTGR~-e~~F~~lI~~ml~s~~L~-Fd~v~LKp~~~~~~sTm~fK~~~l~~ll~~Y~~  132 (197)
T PF10307_consen   55 WNENIVELARLSMQDPDTLTVLLTGRR-ESKFSSLIERMLASKGLE-FDAVCLKPENQRFSSTMDFKQAFLEDLLHTYKN  132 (197)
T ss_pred             hhHHHHHHHHHhhcCCCeeEEEEeCCC-chhHHHHHHHHHhcCCCC-ccEEEeCcccccCccccHHHHHHHHHHHHhcCC
Confidence            456778887744 45567778999999 7 6677778888999998 88899998744444567899888888875  23


Q ss_pred             CcEEEEEcCCccccccc
Q 025360          221 YRIWGNIGDQWSDLQGE  237 (254)
Q Consensus       221 y~i~~~IGDq~sDi~ga  237 (254)
                      .+.+-+.+|+..=+.+-
T Consensus       133 ~~eI~IYeDR~~hvk~F  149 (197)
T PF10307_consen  133 AEEIRIYEDRPKHVKGF  149 (197)
T ss_pred             CCEEEEEcCCHHHHHHH
Confidence            35688899998755443

There are two characteristic sequence motifs, GGWW and TGR.

>PLN02177 glycerol-3-phosphate acyltransferase

Probab=93.05  E-value=0.88  Score=44.29  Aligned_cols=83  Identities=16%  Similarity=0.120  Sum_probs=44.7

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCCC--CcEEEecCC-CCCC---CCcccHHHHHHHHH
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVGY--ERLIMRTAA-DKGK---NAVTYKSEIRKQLL  217 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~~--~~lilr~~~-~~~k---p~~~yK~~~r~~l~  217 (254)
                      ..|.+.+   .++++|.. +++|+.+    +...+.++++ +|++.-  .++-...++ ..++   ++..+-++...+++
T Consensus       111 l~~~a~~---~~~~~g~~-vvVSASp----~~~Vepfa~~~LGid~VIgTeLev~~~G~~TG~i~g~~~c~Ge~Kv~rl~  182 (497)
T PLN02177        111 VHPETWR---VFNSFGKR-YIITASP----RIMVEPFVKTFLGADKVLGTELEVSKSGRATGFMKKPGVLVGDHKRDAVL  182 (497)
T ss_pred             cCHHHHH---HHHhCCCE-EEEECCc----HHHHHHHHHHcCCCCEEEecccEECcCCEEeeeecCCCCCccHHHHHHHH
Confidence            4455444   44567854 9999999    7778888876 788731  111111111 1111   11234333344443


Q ss_pred             H-cCCc-EEEEEcCCccccc
Q 025360          218 E-EGYR-IWGNIGDQWSDLQ  235 (254)
Q Consensus       218 ~-~Gy~-i~~~IGDq~sDi~  235 (254)
                      + .|.+ .....||+.+|..
T Consensus       183 ~~~g~~~~~~aYgDS~sD~p  202 (497)
T PLN02177        183 KEFGDALPDLGLGDRETDHD  202 (497)
T ss_pred             HHhCCCCceEEEECCccHHH
Confidence            2 3321 2367999999974

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=91.68  E-value=0.73  Score=40.23  Aligned_cols=99  Identities=11%  Similarity=0.166  Sum_probs=54.6

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCc-cccHHHHHHHHHhCCCCC---C-CcEEEecCCCCCCCCcccHHHHHHHHHH
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDE-ETFGQVTRDNLHNQGFVG---Y-ERLIMRTAADKGKNAVTYKSEIRKQLLE  218 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~-e~~r~~T~~~L~~~G~~~---~-~~lilr~~~~~~kp~~~yK~~~r~~l~~  218 (254)
                      +.++++.+++..++..+..+.++|+.+. +..+......++..|+..   + ..+-+.+.+ ..|     ..++++-++.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ei~~~~-~~K-----~~~l~~l~~~  210 (272)
T PRK10530        137 PTFTQVDSLAQAARQVNAIWKFALTHEDLPQLQHFAKHVEHELGLECEWSWHDQVDIARKG-NSK-----GKRLTQWVEA  210 (272)
T ss_pred             cceEEcccHHHHHhhcCCcEEEEEecCCHHHHHHHHHHHhhhcCceEEEecCceEEEecCC-CCh-----HHHHHHHHHH
Confidence            3456777888877777766666666541 122333444445555431   1 111111111 111     1455556666


Q ss_pred             cCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360          219 EGYR--IWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       219 ~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      .|..  .+++|||+.+|+.........+..-|
T Consensus       211 ~gi~~~e~i~~GD~~NDi~m~~~ag~~vamgn  242 (272)
T PRK10530        211 QGWSMKNVVAFGDNFNDISMLEAAGLGVAMGN  242 (272)
T ss_pred             cCCCHHHeEEeCCChhhHHHHHhcCceEEecC
Confidence            6754  59999999999988873324554444

>PLN02499 glycerol-3-phosphate acyltransferase

Probab=91.54  E-value=0.29  Score=47.36  Aligned_cols=33  Identities=9%  Similarity=-0.012  Sum_probs=27.6

Q ss_pred             HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCC
Q 025360          152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVG  189 (254)
Q Consensus       152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~  189 (254)
                      .++..++.| +++++|..+    |-..+.++++ +|.+.
T Consensus       101 ~~~~~~~~g-~~vVVTAsP----rvmVEpFake~LG~D~  134 (498)
T PLN02499        101 AWKVFSSCD-KRVVVTRMP----RVMVERFAKEHLRADE  134 (498)
T ss_pred             HHHHHHcCC-eEEEEeCCH----HHHHHHHHHHhcCCce
Confidence            456667788 999999999    8889999998 88863

>PF09949 DUF2183: Uncharacterized conserved protein (DUF2183); InterPro: IPR019236 This domain, found in various bacterial and fungal proteins, has no known function

Probab=90.72  E-value=1.3  Score=33.73  Aligned_cols=73  Identities=22%  Similarity=0.226  Sum_probs=49.8

Q ss_pred             eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCC--C--CCCc-ccHHHHHHHH-HHcCCcEEEEEcCCc-ccc
Q 025360          162 KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADK--G--KNAV-TYKSEIRKQL-LEEGYRIWGNIGDQW-SDL  234 (254)
Q Consensus       162 ~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~--~--kp~~-~yK~~~r~~l-~~~Gy~i~~~IGDq~-sDi  234 (254)
                      ++++||+.+ .+......+-|+..|+|. ..+++++-+..  +  +... .+|....+++ ........+.|||+- .|.
T Consensus         1 pf~YvS~SP-wnly~~l~~Fl~~~~~P~-G~~~Lr~~~~~~~~~~~~~~~~~K~~~i~~i~~~fP~~kfiLIGDsgq~Dp   78 (100)
T PF09949_consen    1 PFFYVSNSP-WNLYPFLRDFLRRNGFPA-GPLLLRDYGPSLSGLFKSGAEEHKRDNIERILRDFPERKFILIGDSGQHDP   78 (100)
T ss_pred             CEEEEcCCH-HHHHHHHHHHHHhcCCCC-CceEcccCCccccccccCCchhHHHHHHHHHHHHCCCCcEEEEeeCCCcCH
Confidence            478999999 998899999999999994 66888876321  1  1223 3675544444 444445688899975 465


Q ss_pred             cc
Q 025360          235 QG  236 (254)
Q Consensus       235 ~g  236 (254)
                      ..
T Consensus        79 ei   80 (100)
T PF09949_consen   79 EI   80 (100)
T ss_pred             HH
Confidence            43

>KOG2961 consensus Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=90.71  E-value=4.2  Score=33.58  Aligned_cols=111  Identities=17%  Similarity=0.209  Sum_probs=61.0

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHC-C-CeEEEEeCCCcc---cc
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIES-G-LKVILVTGRDEE---TF  174 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~-G-~~i~~vTgR~~e---~~  174 (254)
                      +.+|+|||=|.++.-.             ++            ...-|.-+.-++.+++. | ..++++||..+.   ..
T Consensus        42 ~ikavVlDKDNcit~P-------------~~------------~~Iwp~~l~~ie~~~~vygek~i~v~SNsaG~~~~D~   96 (190)
T KOG2961|consen   42 GIKAVVLDKDNCITAP-------------YS------------LAIWPPLLPSIERCKAVYGEKDIAVFSNSAGLTEYDH   96 (190)
T ss_pred             CceEEEEcCCCeeeCC-------------cc------------cccCchhHHHHHHHHHHhCcccEEEEecCcCccccCC
Confidence            6899999999998753             22            22334444555566654 4 678899987631   11


Q ss_pred             HHHHHHHHH-hCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH----cCCcEEEEEcCCc-ccccccc-cCCcEE
Q 025360          175 GQVTRDNLH-NQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE----EGYRIWGNIGDQW-SDLQGEC-TGNRTF  244 (254)
Q Consensus       175 r~~T~~~L~-~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~----~Gy~i~~~IGDq~-sDi~ga~-~g~r~f  244 (254)
                      -....+.|+ +-|+|     ++|-.  ..||..  -.++..-+-.    -.-..+++|||+. +||.-|. .|.-.+
T Consensus        97 d~s~Ak~le~k~gIp-----VlRHs--~kKP~c--t~E~~~y~~~Nshv~~~se~~~vGDRlfTDI~~aN~mGs~gV  164 (190)
T KOG2961|consen   97 DDSKAKALEAKIGIP-----VLRHS--VKKPAC--TAEEVEYHFGNSHVCTSSELIMVGDRLFTDIVYANRMGSLGV  164 (190)
T ss_pred             chHHHHHHHHhhCCc-----eEeec--ccCCCc--cHHHHHHHhCCcccCChhHeEEEccchhhhHhhhhhccceeE
Confidence            122234444 45887     45543  233322  1221111111    0113589999998 7998776 443333

>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]

Probab=89.97  E-value=5.2  Score=39.20  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=55.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH-HhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL-HNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L-~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ++...||+.|=+.+|++-|++-+.+||-.     ..|.... .++|.++|-    .    ..+|  +-|-..-++-++.|
T Consensus       445 kDivK~Gi~ERf~elR~MgIkTvM~TGDN-----~~TAa~IA~EAGVDdfi----A----eatP--EdK~~~I~~eQ~~g  509 (681)
T COG2216         445 KDIVKPGIKERFAELRKMGIKTVMITGDN-----PLTAAAIAAEAGVDDFI----A----EATP--EDKLALIRQEQAEG  509 (681)
T ss_pred             hhhcchhHHHHHHHHHhcCCeEEEEeCCC-----HHHHHHHHHHhCchhhh----h----cCCh--HHHHHHHHHHHhcC
Confidence            46788999999999999999999999988     3454444 568998642    1    1122  33444333444444


Q ss_pred             CcEEEEEcCCccccc
Q 025360          221 YRIWGNIGDQWSDLQ  235 (254)
Q Consensus       221 y~i~~~IGDq~sDi~  235 (254)
                       +.+.+.||.-||--
T Consensus       510 -rlVAMtGDGTNDAP  523 (681)
T COG2216         510 -RLVAMTGDGTNDAP  523 (681)
T ss_pred             -cEEEEcCCCCCcch
Confidence             78999999999863

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=89.74  E-value=0.21  Score=43.91  Aligned_cols=45  Identities=20%  Similarity=0.246  Sum_probs=30.5

Q ss_pred             CCCCCcccHHHHHHHHHHcCC--cEEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          201 KGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       201 ~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      .+||.+   ...+..++..|.  ..+++|||+. +|+.+|+ +|.+++.+..
T Consensus       176 ~gKP~~---~~~~~~~~~~~~~~~~~~~VGD~~~~Di~~a~~~G~~~v~v~~  224 (249)
T TIGR01457       176 IGKPNA---IIMEKAVEHLGTEREETLMVGDNYLTDIRAGIDAGIDTLLVHT  224 (249)
T ss_pred             cCCChH---HHHHHHHHHcCCCcccEEEECCCchhhHHHHHHcCCcEEEEcC
Confidence            456644   223334444454  4599999996 8999997 7888887753

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>KOG3189 consensus Phosphomannomutase [Lipid transport and metabolism]

Probab=88.69  E-value=0.85  Score=39.17  Aligned_cols=45  Identities=27%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      +..--++||+||||.-.                          .....|.+.++|..|+.+ +.|.+|-|.+
T Consensus         9 ~~~~l~lfdvdgtLt~~--------------------------r~~~~~e~~~~l~~lr~~-v~ig~VggsD   53 (252)
T KOG3189|consen    9 DEETLCLFDVDGTLTPP--------------------------RQKVTPEMLEFLQKLRKK-VTIGFVGGSD   53 (252)
T ss_pred             CCceEEEEecCCccccc--------------------------cccCCHHHHHHHHHHhhh-eEEEEeecHH
Confidence            33456889999999864                          255677888888887766 7788887766

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=88.13  E-value=1.1  Score=38.00  Aligned_cols=76  Identities=18%  Similarity=0.175  Sum_probs=45.1

Q ss_pred             EEEEeCCCccccHHHHHHHHHhCCCCCCC---cEEEecCCCCCCCCcccH-HHHHHHHHHcCCc--EEEEEcCCcccccc
Q 025360          163 VILVTGRDEETFGQVTRDNLHNQGFVGYE---RLIMRTAADKGKNAVTYK-SEIRKQLLEEGYR--IWGNIGDQWSDLQG  236 (254)
Q Consensus       163 i~~vTgR~~e~~r~~T~~~L~~~G~~~~~---~lilr~~~~~~kp~~~yK-~~~r~~l~~~Gy~--i~~~IGDq~sDi~g  236 (254)
                      ++++++..    .+...++|++.|+..+.   .+-+.+.+       .-| ..++.-++..|.+  .+++|||+.+|+..
T Consensus       110 ~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~ei~~~~-------~~K~~~i~~l~~~~~i~~~~~i~iGDs~ND~~m  178 (215)
T TIGR01487       110 VIMREGKD----VDEVREIIKERGLNLVDSGFAIHIMKKG-------VDKGVGVEKLKELLGIKPEEVAAIGDSENDIDL  178 (215)
T ss_pred             EEecCCcc----HHHHHHHHHhCCeEEEecCceEEEecCC-------CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHH
Confidence            33445444    56667788877765321   11111111       223 3455555666765  48999999999998


Q ss_pred             cccCCcEEEeCCC
Q 025360          237 ECTGNRTFKLPNP  249 (254)
Q Consensus       237 a~~g~r~fklPNp  249 (254)
                      .......|...|.
T Consensus       179 l~~ag~~vam~na  191 (215)
T TIGR01487       179 FRVVGFKVAVANA  191 (215)
T ss_pred             HHhCCCeEEcCCc
Confidence            8855567776663

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>TIGR01652 ATPase-Plipid phospholipid-translocating P-type ATPase, flippase

Probab=86.90  E-value=2.6  Score=44.80  Aligned_cols=29  Identities=24%  Similarity=0.315  Sum_probs=27.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      ++++-|++.+.++.|++.|+++.++||-.
T Consensus       629 eD~lq~~v~etI~~L~~AGIkv~mlTGD~  657 (1057)
T TIGR01652       629 EDKLQEGVPETIELLRQAGIKIWVLTGDK  657 (1057)
T ss_pred             hhhhhhccHHHHHHHHHCCCeEEEEcCCc
Confidence            67899999999999999999999999976

This model describes the P-type ATPase responsible for transporting phospholipids from one leaflet of bilayer membranes to the other. These ATPases are found only in eukaryotes.

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=86.43  E-value=2.9  Score=35.42  Aligned_cols=37  Identities=11%  Similarity=-0.124  Sum_probs=25.6

Q ss_pred             HHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeC
Q 025360          211 EIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLP  247 (254)
Q Consensus       211 ~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklP  247 (254)
                      +++.-++..|..  .+++|||+.+|+.--......|.||
T Consensus       183 al~~l~~~lgi~~~~vi~~GD~~NDi~ml~~ag~~va~~  221 (221)
T TIGR02463       183 AANWLKATYNQPDVKTLGLGDGPNDLPLLEVADYAVVIK  221 (221)
T ss_pred             HHHHHHHHhCCCCCcEEEECCCHHHHHHHHhCCceEEeC
Confidence            445555666643  5999999999998776433666654

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=85.92  E-value=2.5  Score=37.27  Aligned_cols=85  Identities=15%  Similarity=0.063  Sum_probs=46.1

Q ss_pred             HHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC----CCCcEEEecCCCCCCCCcccHHHHHHHHHHcC--C-cEEEEE
Q 025360          155 KLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV----GYERLIMRTAADKGKNAVTYKSEIRKQLLEEG--Y-RIWGNI  227 (254)
Q Consensus       155 ~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~----~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G--y-~i~~~I  227 (254)
                      .++..++..+++-..+ ....+...+.|+..|+.    .+.--++... .++       .+++.-++..|  . ..+++|
T Consensus       143 ~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~ei~~~~-~Kg-------~al~~l~~~~~i~~~~~v~~~  213 (273)
T PRK00192        143 LAKDREFSEPFLWNGS-EAAKERFEEALKRLGLKVTRGGRFLHLLGGG-DKG-------KAVRWLKELYRRQDGVETIAL  213 (273)
T ss_pred             HHHhcccCCceeecCc-hHHHHHHHHHHHHcCCEEEECCeEEEEeCCC-CHH-------HHHHHHHHHHhccCCceEEEE
Confidence            3455566655552223 23356667777777764    2211122221 211       23333334444  3 679999


Q ss_pred             cCCcccccccccCCcEEEeCC
Q 025360          228 GDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       228 GDq~sDi~ga~~g~r~fklPN  248 (254)
                      ||+.+|+.........+...|
T Consensus       214 GDs~NDi~m~~~ag~~vam~N  234 (273)
T PRK00192        214 GDSPNDLPMLEAADIAVVVPG  234 (273)
T ss_pred             cCChhhHHHHHhCCeeEEeCC
Confidence            999999988874445665555

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=85.88  E-value=0.51  Score=41.02  Aligned_cols=33  Identities=24%  Similarity=0.172  Sum_probs=24.0

Q ss_pred             HHHHHcCC---cEEEEEcCCc-ccccccc-cCCcEEEe
Q 025360          214 KQLLEEGY---RIWGNIGDQW-SDLQGEC-TGNRTFKL  246 (254)
Q Consensus       214 ~~l~~~Gy---~i~~~IGDq~-sDi~ga~-~g~r~fkl  246 (254)
                      ..++..|.   +.+++|||+. +|+.+|+ +|.+++.+
T Consensus       196 ~~~~~~~~~~~~~~~~IGD~~~~Di~~A~~~G~~~i~v  233 (236)
T TIGR01460       196 AALNLLQARPERRDVMVGDNLRTDILGAKNAGFDTLLV  233 (236)
T ss_pred             HHHHHhCCCCccceEEECCCcHHHHHHHHHCCCcEEEE
Confidence            34444443   2359999998 8999997 78888765

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=84.67  E-value=0.58  Score=38.88  Aligned_cols=18  Identities=22%  Similarity=0.102  Sum_probs=15.9

Q ss_pred             ceEEEecCCccccchhhh
Q 025360          102 DAWILDVDDTCISNVYYY  119 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~  119 (254)
                      ++|+||.||||+++.+.+
T Consensus         2 ~~i~fDktGTLt~~~~~v   19 (215)
T PF00702_consen    2 DAICFDKTGTLTQGKMSV   19 (215)
T ss_dssp             SEEEEECCTTTBESHHEE
T ss_pred             eEEEEecCCCcccCeEEE
Confidence            689999999999987655

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=84.02  E-value=1.2  Score=40.57  Aligned_cols=25  Identities=24%  Similarity=0.179  Sum_probs=20.7

Q ss_pred             cEEEEEcCCc-ccccccc-cCCcEEEe
Q 025360          222 RIWGNIGDQW-SDLQGEC-TGNRTFKL  246 (254)
Q Consensus       222 ~i~~~IGDq~-sDi~ga~-~g~r~fkl  246 (254)
                      +.+++|||++ +||.+|. +|..++.+
T Consensus       264 ~~~~mIGD~~~tDI~ga~~~G~~silV  290 (321)
T TIGR01456       264 HALYMVGDNPASDIIGAQNYGWFSCLV  290 (321)
T ss_pred             heEEEEcCChhhhhhhHHhCCceEEEe
Confidence            4699999998 8999997 67777655

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>KOG0204 consensus Calcium transporting ATPase [Inorganic ion transport and metabolism]

Probab=82.45  E-value=8.9  Score=39.69  Aligned_cols=92  Identities=20%  Similarity=0.232  Sum_probs=61.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCCCC-----------------C
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAADK-----------------G  202 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~~~-----------------~  202 (254)
                      ++|.-||+.+.++.++..|++|-.|||-.    -....+.-.+-|+-.-+.  +.+-+.+.+                 .
T Consensus       645 kDPvRPgV~~AV~~Cq~AGItVRMVTGDN----I~TAkAIA~eCGILt~~~d~~~lEG~eFr~~s~ee~~~i~pkl~VlA  720 (1034)
T KOG0204|consen  645 KDPVRPGVPEAVQLCQRAGITVRMVTGDN----INTAKAIARECGILTPGGDFLALEGKEFRELSQEERDKIWPKLRVLA  720 (1034)
T ss_pred             cCCCCCCcHHHHHHHHHcCcEEEEEeCCc----HHHHHHHHHHcccccCCCccceecchhhhhcCHHHHHhhhhhheeee
Confidence            78999999999999999999999999988    333334445557743222  333332211                 0


Q ss_pred             CCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          203 KNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       203 kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ...+.-|.-+-+.|++.| .++++-||.-+|--+-+
T Consensus       721 RSSP~DK~lLVk~L~~~g-~VVAVTGDGTNDaPALk  755 (1034)
T KOG0204|consen  721 RSSPNDKHLLVKGLIKQG-EVVAVTGDGTNDAPALK  755 (1034)
T ss_pred             cCCCchHHHHHHHHHhcC-cEEEEecCCCCCchhhh
Confidence            112344555556677655 68999999999976655

>PLN03190 aminophospholipid translocase; Provisional

Probab=81.91  E-value=9.1  Score=41.27  Aligned_cols=29  Identities=28%  Similarity=0.328  Sum_probs=27.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      .+++-+++.+.++.|+++|+++.++||..
T Consensus       724 ~D~lr~~v~~~I~~l~~agi~v~mlTGD~  752 (1178)
T PLN03190        724 EDKLQQGVPEAIESLRTAGIKVWVLTGDK  752 (1178)
T ss_pred             ecCCchhHHHHHHHHHHCCCEEEEECCCC
Confidence            56899999999999999999999999976

>COG5610 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=81.80  E-value=6.6  Score=37.90  Aligned_cols=91  Identities=19%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCCCCCC-CCcccHHHHHHHHHHcCC
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAADKGK-NAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~~~~k-p~~~yK~~~r~~l~~~Gy  221 (254)
                      -|.....+|++.+.+.|.+|+++|.=. -- -+..+..|.+.|+..+. .++++++.--.| +...+|.-  ..++.-.-
T Consensus        99 ypn~~~~eL~e~ai~n~krVIlISDMY-lp-s~Il~~~L~s~g~d~~nipiY~S~e~rl~KnSg~LFk~V--lk~EnVd~  174 (635)
T COG5610          99 YPNKKNIELVEEAIKNEKRVILISDMY-LP-SSILRTFLNSFGPDFNNIPIYMSSEFRLKKNSGNLFKAV--LKLENVDP  174 (635)
T ss_pred             eccccchHHHHHHHhCCCeEEEEeccc-Cc-HHHHHHHHHhcCCCccCceeeecceeehhcccchHHHHH--HhhcCCCh
Confidence            455567899999999999999999874 11 46677889999998654 367776542122 22244432  12222223


Q ss_pred             cEEEEEcCCcc-cccccc
Q 025360          222 RIWGNIGDQWS-DLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~s-Di~ga~  238 (254)
                      ..|+.+||+|. |..-++
T Consensus       175 ~~w~H~GDN~~aD~l~pk  192 (635)
T COG5610         175 KKWIHCGDNWVADYLKPK  192 (635)
T ss_pred             hheEEecCchhhhhcCcc
Confidence            45999999984 766554

>PRK10444 UMP phosphatase; Provisional

Probab=81.41  E-value=1.2  Score=39.31  Aligned_cols=44  Identities=23%  Similarity=0.153  Sum_probs=30.1

Q ss_pred             CCCCCcccHHHHHHHHHHcCC--cEEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360          201 KGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQW-SDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       201 ~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~-sDi~ga~-~g~r~fklP  247 (254)
                      .+||.+   ......++..|.  ..+++|||+. +|+.+|+ +|.+++.+.
T Consensus       172 ~gKP~~---~~~~~~~~~~~~~~~~~v~IGD~~~tDi~~A~~~G~~~vlV~  219 (248)
T PRK10444        172 VGKPSP---WIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVL  219 (248)
T ss_pred             cCCCCH---HHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHcCCCEEEEC
Confidence            356543   333334444453  4599999997 8999998 788888774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
3ocy_A	262	Structure Of Recombinant Haemophilus Influenzae E(P		1e-05
3pct_A	260	Structure Of The Class C Acid Phosphatase From Past		3e-05
3sf0_A	262	Structure Of Recombinant Haemophilus Influenzae E(P		4e-05
3ocu_A	262	Structure Of Recombinant Haemophilus Influenzae E(P		4e-05
3et4_A	255	Structure Of Recombinant Haemophilus Influenzae E(P		5e-05

>pdb|3OCY|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid Phosphatase Complexed With Inorganic Phosphate Length = 262

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
           D+D+T + N  Y   +     P+D   +  W       A+PG +   N +     KV  V
Sbjct: 64  DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
           T R + T    T D++   GF G E        DK   A  + +EI KQ    GY I   
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 178
Query: 227 IGDQWSDL 234
           +GD   D 
Sbjct: 179 VGDNLDDF 186

>pdb|3PCT|A Chain A, Structure Of The Class C Acid Phosphatase From Pasteurella Multocida Length = 260

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 36/143 (25%), Positives = 59/143 (41%), Gaps = 10/143 (6%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
           D+D+T I N  Y   +      + P  +  W       AIPG +   N +  +G  +  V
Sbjct: 64  DLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
           + R ++     T D++   GF G     +    DK   +V +     KQ+ + GY I   
Sbjct: 124 SNRRDDVEKAGTVDDMKRLGFTGVNDKTLLLKKDKSNKSVRF-----KQVEDMGYDIVLF 178
Query: 227 IGDQWSDLQGECTGNRTFKLPNP 249
           +GD  +D      G+ T+K  N 
Sbjct: 179 VGDNLNDF-----GDATYKKSNA 196

>pdb|3SF0|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid Phosphatase Mutant D64n Complexed With 5'amp Length = 262

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
           ++D+T + N  Y   +     P+D   +  W       A+PG +   N +     KV  V
Sbjct: 64  NLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
           T R + T    T D++   GF G E        DK   A  + +EI KQ    GY I   
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 178
Query: 227 IGDQWSDL 234
           +GD   D 
Sbjct: 179 VGDNLDDF 186

>pdb|3OCU|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid Phosphatase Mutant D66n Complexed With Nmn Length = 262

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
           D+++T + N  Y   +     P+D   +  W       A+PG +   N +     KV  V
Sbjct: 64  DLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYV 123
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
           T R + T    T D++   GF G E        DK   A  + +EI KQ    GY I   
Sbjct: 124 TNRKDSTEKSGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 178
Query: 227 IGDQWSDL 234
           +GD   D 
Sbjct: 179 VGDNLDDF 186

>pdb|3ET4|A Chain A, Structure Of Recombinant Haemophilus Influenzae E(P4) Acid Phosphatase Length = 255

Iteration: 1
 Score = 44.7 bits (104), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 5/128 (3%)
Query: 107 DVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILV 166
           D+D+T + N  Y   +     P+D   +  W       A+PG +   N +     KV  V
Sbjct: 65  DLDETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHKGKVFYV 124
Query: 167 TGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGN 226
           T R + +    T D++   GF G E        DK   A  + +EI KQ    GY I   
Sbjct: 125 TNRKDSSEKAGTIDDMKRLGFNGVEESAFYLKKDKSAKAARF-AEIEKQ----GYEIVLY 179
Query: 227 IGDQWSDL 234
           +GD   D 
Sbjct: 180 VGDNLDDF 187

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	1e-39
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	6e-39
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	9e-31
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	2e-10
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida} Length = 260

 Score =  137 bits (345), Expect = 1e-39
 Identities = 42/213 (19%), Positives = 68/213 (31%), Gaps = 23/213 (10%)

Query: 57  RTVPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNV 116
             +  Q    +      G+Y               +          A ++D+D+T I N 
Sbjct: 14  AKLQQQVAMGLIWTQQSGEYAALAHQAFNSAKMAFDHAKAKKGKKKAVVVDLDETMIDNS 73

Query: 117 YYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ 176
            Y   +      + P  +  W       AIPG +   N +  +G  +  V+ R ++    
Sbjct: 74  AYAGWQVQSGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDDVEKA 133

Query: 177 VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQG 236
            T D++   GF G     +    DK       KS   KQ+ + GY I   +GD  +D   
Sbjct: 134 GTVDDMKRLGFTGVNDKTLLLKKDKS-----NKSVRFKQVEDMGYDIVLFVGDNLNDFGD 188

Query: 237 ECT------------------GNRTFKLPNPMY 251
                                G +   LPN  Y
Sbjct: 189 ATYKKSNAERRDFVAKNSKAFGKKFIVLPNTQY 221

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A Length = 262

 Score =  135 bits (340), Expect = 6e-39
 Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 24/201 (11%)

Query: 70  YMIG-GQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDP 128
           +M   G+Y               +   ++     A + D+++T + N  Y   +     P
Sbjct: 26  WMQDSGEYKALAYQAYNAAKVAFDHAKVAKGKKKAVVADLNETMLDNSPYAGWQVQNNKP 85

Query: 129 YDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188
           +D   +  W       A+PG +   N +     KV  VT R + T    T D++   GF 
Sbjct: 86  FDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDSTEKSGTIDDMKRLGFN 145

Query: 189 GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECT--------- 239
           G E           K   + K+    ++ ++GY I   +GD   D               
Sbjct: 146 GVEESAFY-----LKKDKSAKAARFAEIEKQGYEIVLYVGDNLDDFGNTVYGKLNADRRA 200

Query: 240 ---------GNRTFKLPNPMY 251
                    G     LPN  Y
Sbjct: 201 FVDQNQGKFGKTFIMLPNANY 221

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A Length = 258

 Score =  113 bits (284), Expect = 9e-31
 Identities = 36/200 (18%), Positives = 63/200 (31%), Gaps = 25/200 (12%)

Query: 70  YMIGGQYDRDVELVVEQILCYVNE-VVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDP 128
           Y   G+               ++  +    +   A +LD+D+T + N  +          
Sbjct: 27  YQTAGEMKALYYQGYNTGQLKLDAALAKGTEKKPAIVLDLDETVLDNSPHQAMSVKTGKG 86

Query: 129 YDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV 188
           Y P  +  W  K    A+PG +         G+ +  ++ R        T  NL   G  
Sbjct: 87  Y-PYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTN-QLDATIKNLERVGAP 144

Query: 189 GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQG------------ 236
              +  +       ++      E R++L+ + + I    GD  SD  G            
Sbjct: 145 QATKEHILL-----QDPKEKGKEKRRELVSQTHDIVLFFGDNLSDFTGFDGKSVKDRNQA 199

Query: 237 -----ECTGNRTFKLPNPMY 251
                   G +    PNPMY
Sbjct: 200 VTDSKAQFGEKFIIFPNPMY 219

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A Length = 211

 Score = 57.9 bits (139), Expect = 2e-10
 Identities = 33/170 (19%), Positives = 56/170 (32%), Gaps = 19/170 (11%)

Query: 96  LSGDGMDAWILDVDDTCISNV-YYYKGKRYGC-----DPYDPAGFRAWALKGGCPAIP-- 147
           L+G    A   D+DDT + +   +++GK+           +P  +          +IP  
Sbjct: 32  LAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKE 91

Query: 148 GVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVT 207
               L +  +  G  +  VTGR       V++    N          +  A DK      
Sbjct: 92  VARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKP----- 146

Query: 208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGE----CTGNRTFKLPNPMYFV 253
                + Q L++   I    GD  +D+         G R  +  N  Y  
Sbjct: 147 -GQNTKSQWLQD-KNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKP 194

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 43.9 bits (103), Expect = 2e-05
 Identities = 16/87 (18%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 144 PAIPGVLVLFNKLIESGLKVILVTGRDEET------FGQVTRDNLHNQGFVGYERLIMRT 197
              P V+ L       G ++++V+GR+  T      + ++TR  + +   V       R 
Sbjct: 188 VINPMVVELSKMYALMGYQIVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQRE 247

Query: 198 AADKGKNAVTYKSEIRKQLLEEGYRIW 224
             D  +     K EI  + +   + + 
Sbjct: 248 QGDT-RKDDVVKEEIFWKHIAPHFDVK 273

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 38/238 (15%), Positives = 61/238 (25%), Gaps = 83/238 (34%)

Query: 31  YSMPGDGASYCLSWRLAVEANNVRAWRTVPTQCLRYVESYMIG-GQYDRDVELVVEQI-- 87
             + G G +    W +A++        +   QC    + + +     +   E V+E +  
Sbjct: 156 DGVLGSGKT----W-VALDV-----CLSYKVQCKMDFKIFWLNLKNCNSP-ETVLEMLQK 204

Query: 88  LCYVNEVVLS--GDGMDAWILDVDDTCISNVYYYKGKRYG-C-----DPYDPAGFRAW-A 138
           L Y  +   +   D      L +           K K Y  C     +  +    +AW A
Sbjct: 205 LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA---KAWNA 261

Query: 139 LKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA 198
               C                    IL+T R +    QVT D L                
Sbjct: 262 FNLSCK-------------------ILLTTRFK----QVT-DFL---------------- 281

Query: 199 ADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKLP------NPM 250
                       +     L           D+   L  +    R   LP      NP 
Sbjct: 282 --SAATTTHISLDHHSMTLTP---------DEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	100.0
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	100.0
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.98
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.7
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	99.65
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.64
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	99.62
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	99.61
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	99.59
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.58
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.58
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.57
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	99.57
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	99.57
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	99.57
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	99.57
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.56
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	99.56
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	99.56
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	99.55
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.55
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.54
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	99.54
2hsz_A	243	Novel predicted phosphatase; structural genomics,	99.53
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	99.53
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	99.53
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	99.53
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	99.53
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	99.53
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	99.53
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	99.52
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	99.51
2zg6_A	220	Putative uncharacterized protein ST2620, probable	99.51
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.5
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	99.5
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	99.49
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.49
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	99.49
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.49
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	99.49
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	99.49
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	99.49
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	99.48
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	99.48
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	99.47
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	99.47
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	99.47
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	99.47
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	99.46
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	99.46
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	99.46
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	99.46
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	99.45
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	99.45
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	99.44
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	99.44
2o2x_A	218	Hypothetical protein; structural genomics, joint c	99.43
3fvv_A	232	Uncharacterized protein; unknown function, structu	99.43
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	99.42
1te2_A	226	Putative phosphatase; structural genomics, phospha	99.42
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	99.42
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	99.41
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	99.41
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	99.4
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	99.39
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	99.39
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	99.39
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	99.38
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	99.38
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	99.38
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	99.36
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	99.36
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	99.35
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	99.34
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.33
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.33
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	99.33
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	99.33
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	99.32
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	99.3
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.3
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	99.29
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.28
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.27
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	99.27
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	99.26
3mmz_A	176	Putative HAD family hydrolase; structural genomics	99.26
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	99.26
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.24
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	99.24
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.24
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	99.21
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	99.21
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.2
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	99.2
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	99.18
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.14
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.13
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.08
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	98.99
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	98.98
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	98.97
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	98.91
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	98.9
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	98.9
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	98.88
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	98.87
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	98.85
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	98.83
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	98.83
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	98.78
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	98.76
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	98.74
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	98.73
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	98.63
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	98.06
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	98.62
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	98.61
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	98.55
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	98.53
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	98.53
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	98.52
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	98.47
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	98.46
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	98.45
4gxt_A	385	A conserved functionally unknown protein; structur	98.44
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	98.42
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	98.4
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	98.38
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	98.37
3dao_A	283	Putative phosphatse; structural genomics, joint ce	98.37
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	98.33
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	98.26
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	98.25
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	98.25
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	98.25
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	98.24
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	98.23
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	98.2
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	98.15
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	98.15
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	98.1
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	98.01
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	98.01
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	98.0
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	97.99
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	97.91
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	97.79
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	97.75
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	97.68
1y8a_A	332	Hypothetical protein AF1437; structural genomics,	97.51
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	97.47
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	97.43
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	97.24
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	97.16
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	97.15
3ar4_A	995	Sarcoplasmic/endoplasmic reticulum calcium ATPase;	96.94
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	96.9
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	96.82
2zxe_A	1028	Na, K-ATPase alpha subunit; membrane protein, ION	96.66
3ixz_A	1034	Potassium-transporting ATPase alpha; ION pump, H+,	96.58
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	96.56
1mhs_A	920	Proton pump, plasma membrane ATPase; ION transport	96.32
3b8c_A	885	ATPase 2, plasma membrane-type; P-type ATPase, pro	95.48
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	95.37
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	95.13
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	94.7
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	94.63
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	93.22
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	93.22
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	92.8
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	89.12
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	88.83
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	86.03
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	85.53
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	85.11
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	83.81
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	82.24
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	80.49

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=100.00  E-value=2.9e-40  Score=291.08  Aligned_cols=180  Identities=21%  Similarity=0.280  Sum_probs=167.2

Q ss_pred             HHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCC
Q 025360           65 RYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCP  144 (254)
Q Consensus        65 ~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  144 (254)
                      --+..|++|++|++++.++++.|+.|+++....++++++|||||||||+||.+|+..+.+++.+|+++.|++|+..+.++
T Consensus        22 ~a~~w~q~S~Ey~al~~q~yn~A~~~ld~~~~~~~~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~~~~~  101 (262)
T 3ocu_A           22 LGLNWMQDSGEYKALAYQAYNAAKVAFDHAKVAKGKKKAVVADLNETMLDNSPYAGWQVQNNKPFDGKDWTRWVDARQSR  101 (262)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCTTCEEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEECCCcCCCCchhhhhhccccccCCHHHHHHHHHcCCCC
Confidence            34678899999999999999999999988766678899999999999999999999988888899999999999999999


Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccc-cHHHHHHHHHhCCCCCCC--cEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEET-FGQVTRDNLHNQGFVGYE--RLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~-~r~~T~~~L~~~G~~~~~--~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ++||++++++.|+++|++|+|||||+ +. +|+.|+.||+++||+.|+  +++|++..       .+|+.+|++|++.||
T Consensus       102 ~~pG~~ell~~L~~~G~ki~ivTgR~-~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~~-------~~K~~~r~~l~~~Gy  173 (262)
T 3ocu_A          102 AVPGAVEFNNYVNSHNGKVFYVTNRK-DSTEKSGTIDDMKRLGFNGVEESAFYLKKDK-------SAKAARFAEIEKQGY  173 (262)
T ss_dssp             ECTTHHHHHHHHHHTTEEEEEEEEEE-TTTTHHHHHHHHHHHTCSCCSGGGEEEESSC-------SCCHHHHHHHHHTTE
T ss_pred             CCccHHHHHHHHHHCCCeEEEEeCCC-ccchHHHHHHHHHHcCcCcccccceeccCCC-------CChHHHHHHHHhcCC
Confidence            99999999999999999999999999 87 899999999999999888  89998642       468899999999999


Q ss_pred             cEEEEEcCCcccccccc------------------cCCcEEEeCCCCCC
Q 025360          222 RIWGNIGDQWSDLQGEC------------------TGNRTFKLPNPMYF  252 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~------------------~g~r~fklPNp~y~  252 (254)
                      +|+++|||+++||.++.                  +|.++|+||||||+
T Consensus       174 ~iv~~vGD~~~Dl~~~~~~~~~~~r~a~v~~~~~~fG~~~ivlPNp~YG  222 (262)
T 3ocu_A          174 EIVLYVGDNLDDFGNTVYGKLNADRRAFVDQNQGKFGKTFIMLPNANYG  222 (262)
T ss_dssp             EEEEEEESSGGGGCSTTTTCCHHHHHHHHHHTGGGBTTTEEECCCSSCS
T ss_pred             CEEEEECCChHHhccccccCCHHHHHHHHHHHHHHhCCCEEEeCCCCcc
Confidence            99999999999999955                  79999999999997

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=100.00  E-value=6.1e-40  Score=288.71  Aligned_cols=180  Identities=22%  Similarity=0.295  Sum_probs=161.9

Q ss_pred             HHHHhhhcCCcchHHHHHHHHHHHHHHHHhhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCC
Q 025360           65 RYVESYMIGGQYDRDVELVVEQILCYVNEVVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCP  144 (254)
Q Consensus        65 ~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  144 (254)
                      .-+..|++||+|++|+.++++.|+.|+++.....+.+++|||||||||+||.+|+..+.+++.+|+++.|++|+..+.++
T Consensus        22 ~a~~w~q~S~ey~a~~~q~~~~A~~~l~~~~~~~g~~~avVfDIDgTlldn~~y~~~~~~~~~~f~~~~w~~wv~~g~~~  101 (260)
T 3pct_A           22 MGLIWTQQSGEYAALAHQAFNSAKMAFDHAKAKKGKKKAVVVDLDETMIDNSAYAGWQVQSGQGFSPKTWTKWVDARQSA  101 (260)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC-----CEEEEECCBTTTEECHHHHHHHHHHTCCCCHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCEEEEECCccCcCChhHHHhhcccCCCCCHHHHHHHHHcCCCC
Confidence            35678899999999999999999999987543344557999999999999999999888888899999999999999999


Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccc-cHHHHHHHHHhCCCCCCC--cEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEET-FGQVTRDNLHNQGFVGYE--RLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~-~r~~T~~~L~~~G~~~~~--~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ++||++++++.|+++|++|+|||||+ +. +|+.|+.+|+++||+.|+  .++|++.       ..+|+.+|++|++.||
T Consensus       102 ~~pg~~ell~~L~~~G~~i~ivTgR~-~~~~r~~T~~~L~~lGi~~~~~~~Lilr~~-------~~~K~~~r~~L~~~gy  173 (260)
T 3pct_A          102 AIPGAVEFSNYVNANGGTMFFVSNRR-DDVEKAGTVDDMKRLGFTGVNDKTLLLKKD-------KSNKSVRFKQVEDMGY  173 (260)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEE-TTTSHHHHHHHHHHHTCCCCSTTTEEEESS-------CSSSHHHHHHHHTTTC
T ss_pred             CCccHHHHHHHHHHCCCeEEEEeCCC-ccccHHHHHHHHHHcCcCccccceeEecCC-------CCChHHHHHHHHhcCC
Confidence            99999999999999999999999999 87 899999999999999877  6999873       2478999999999899


Q ss_pred             cEEEEEcCCcccccccc------------------cCCcEEEeCCCCCC
Q 025360          222 RIWGNIGDQWSDLQGEC------------------TGNRTFKLPNPMYF  252 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~------------------~g~r~fklPNp~y~  252 (254)
                      +|+++|||+++||.++.                  +|.++|+||||||+
T Consensus       174 ~iv~~iGD~~~Dl~~~~~~~~~~~r~a~v~~~~~~fG~~~ivlPNp~YG  222 (260)
T 3pct_A          174 DIVLFVGDNLNDFGDATYKKSNAERRDFVAKNSKAFGKKFIVLPNTQYG  222 (260)
T ss_dssp             EEEEEEESSGGGGCGGGTTCCHHHHHHHHHHTGGGBTTTEEECCCCSCS
T ss_pred             CEEEEECCChHHcCcccccCCHHHHHHHHHHHHHHhCCCEEEeCCCCcc
Confidence            99999999999999854                  79999999999997

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.98  E-value=1.5e-32  Score=241.81  Aligned_cols=181  Identities=21%  Similarity=0.255  Sum_probs=157.6

Q ss_pred             hHHHHHhhhcCCcchHHHHHHHHHHHHHHHHh-hhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhC
Q 025360           63 CLRYVESYMIGGQYDRDVELVVEQILCYVNEV-VLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKG  141 (254)
Q Consensus        63 c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~-~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~  141 (254)
                      -..-+..|++||+|++|+.++++.|+.++++. ...++++++|||||||||+++.+++..+..++..| .+.|++|+...
T Consensus        20 ~~~~~~~~~~s~ey~a~~~q~y~~a~~~~~~~~~~~~~~~kavifDlDGTLld~~~~~~~~~~~~~~~-~~~~~~~~~~~   98 (258)
T 2i33_A           20 QLMADLWYQTAGEMKALYYQGYNTGQLKLDAALAKGTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGY-PYKWDDWINKA   98 (258)
T ss_dssp             GHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEEEECSBTTTEECHHHHHHHHHHSCCT-TTTHHHHHHHC
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCEEEEeCcccCcCCHHHHHHHHhcccch-HHHHHHHHHcC
Confidence            34456778899999999999999999998764 45578899999999999999999998877777778 78899999999


Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCC--CCCcEEEecCCCCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFV--GYERLIMRTAADKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~--~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ..+++||+.++|+.|+++|++++++|||+ +..+..+..+|+.+|++  .++++++++++. .|      ...+..+.+.
T Consensus        99 ~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~-~~~~~~~~~~L~~~Gl~~v~~~~vi~~~~~~-~K------~~~~~~~~~~  170 (258)
T 2i33_A           99 EAEALPGSIDFLKYTESKGVDIYYISNRK-TNQLDATIKNLERVGAPQATKEHILLQDPKE-KG------KEKRRELVSQ  170 (258)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEE-GGGHHHHHHHHHHHTCSSCSTTTEEEECTTC-CS------SHHHHHHHHH
T ss_pred             CCCcCccHHHHHHHHHHCCCEEEEEcCCc-hhHHHHHHHHHHHcCCCcCCCceEEECCCCC-CC------cHHHHHHHHh
Confidence            99999999999999999999999999999 88899999999999998  788999887642 22      2234446667


Q ss_pred             CCcEEEEEcCCcccccccc-----------------cCCcEEEeCCCCCC
Q 025360          220 GYRIWGNIGDQWSDLQGEC-----------------TGNRTFKLPNPMYF  252 (254)
Q Consensus       220 Gy~i~~~IGDq~sDi~ga~-----------------~g~r~fklPNp~y~  252 (254)
                      |++++++|||+++|+.++.                 +|+++|+||||||+
T Consensus       171 ~~~~~l~VGDs~~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i~lpn~~y~  220 (258)
T 2i33_A          171 THDIVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFGEKFIIFPNPMYG  220 (258)
T ss_dssp             HEEEEEEEESSGGGSTTCSSCCHHHHHHHHHHTGGGBTTTEEECCCCSSS
T ss_pred             CCCceEEeCCCHHHhcccccCCHHHHHHHHHHHHHHhcCceEECCCCCcc
Confidence            8899999999999999994                 79999999999997

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=99.70  E-value=1.7e-16  Score=132.38  Aligned_cols=101  Identities=14%  Similarity=0.062  Sum_probs=82.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||.+    +..+...|+..|+..|++.++.+++ ..+||++   ...+..++..|
T Consensus        82 ~~~~~pg~~~~l~~L~~~g~~~~i~tn~~----~~~~~~~l~~~~l~~~fd~~~~~~~~~~~KP~p---~~~~~a~~~lg  154 (216)
T 3kbb_A           82 LLKENPGVREALEFVKSKRIKLALATSTP----QREALERLRRLDLEKYFDVMVFGDQVKNGKPDP---EIYLLVLERLN  154 (216)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHTTCGGGCSEEECGGGSSSCTTST---HHHHHHHHHHT
T ss_pred             hcccCccHHHHHHHHHHcCCCcccccCCc----HHHHHHHHHhcCCCccccccccccccCCCcccH---HHHHHHHHhhC
Confidence            46789999999999999999999999999    7888899999999998888887765 5567765   33344566667


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEE-EeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTF-KLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~f-klPNp  249 (254)
                      ..  .+++|||+.+|+.+|+ +|++++ .+++.
T Consensus       155 ~~p~e~l~VgDs~~Di~aA~~aG~~~i~~v~~g  187 (216)
T 3kbb_A          155 VVPEKVVVFEDSKSGVEAAKSAGIERIYGVVHS  187 (216)
T ss_dssp             CCGGGEEEEECSHHHHHHHHHTTCCCEEEECCS
T ss_pred             CCccceEEEecCHHHHHHHHHcCCcEEEEecCC
Confidence            64  5999999999999998 899886 45543

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=99.65  E-value=5.5e-16  Score=133.54  Aligned_cols=100  Identities=12%  Similarity=0.068  Sum_probs=80.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++|++. .     +...|+++|+..|++.++.+++ ..+||++   ...+..+++.|
T Consensus       114 ~~~~~p~~~~ll~~Lk~~g~~i~i~~~~~-~-----~~~~L~~~gl~~~Fd~i~~~~~~~~~KP~p---~~~~~a~~~lg  184 (250)
T 4gib_A          114 SNDILPGIESLLIDVKSNNIKIGLSSASK-N-----AINVLNHLGISDKFDFIADAGKCKNNKPHP---EIFLMSAKGLN  184 (250)
T ss_dssp             GGGSCTTHHHHHHHHHHTTCEEEECCSCT-T-----HHHHHHHHTCGGGCSEECCGGGCCSCTTSS---HHHHHHHHHHT
T ss_pred             ccccchhHHHHHHHHHhcccccccccccc-h-----hhhHhhhcccccccceeecccccCCCCCcH---HHHHHHHHHhC
Confidence            34689999999999999999999988876 2     3457899999999888888766 5567765   23334566666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                      ..  .|++|||+.+|+++|+ +|++++.++|+-
T Consensus       185 ~~p~e~l~VGDs~~Di~aA~~aG~~~i~v~~~~  217 (250)
T 4gib_A          185 VNPQNCIGIEDASAGIDAINSANMFSVGVGNYE  217 (250)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEESCTT
T ss_pred             CChHHeEEECCCHHHHHHHHHcCCEEEEECChh
Confidence            64  5999999999999998 899999998763

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.64  E-value=1.6e-15  Score=125.69  Aligned_cols=134  Identities=17%  Similarity=0.138  Sum_probs=101.1

Q ss_pred             CceEEEecCCccccchh-hhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          101 MDAWILDVDDTCISNVY-YYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      .++|+||+||||++... .|.+..       ...      ....+++||+.++|+.|+++|++++++||++ ...+....
T Consensus         3 ik~vifD~DgtL~~~~~~~y~~~~-------~~~------~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~-~~~~~~~~   68 (189)
T 3ib6_A            3 LTHVIWDMGETLNTVPNTRYDHHP-------LDT------YPEVVLRKNAKETLEKVKQLGFKQAILSNTA-TSDTEVIK   68 (189)
T ss_dssp             CCEEEECTBTTTBCCCTTSSCSSC-------GGG------CTTCCBCTTHHHHHHHHHHTTCEEEEEECCS-SCCHHHHH
T ss_pred             ceEEEEcCCCceeeccchhhhhHH-------Hhc------cCCceeCcCHHHHHHHHHHCCCEEEEEECCC-ccchHHHH
Confidence            67999999999988432 111110       000      1247899999999999999999999999999 66668889


Q ss_pred             HHHHhCCCCCCCcEEEecCC-----CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCC-cccccccc-cCCcEEEeCCCC
Q 025360          180 DNLHNQGFVGYERLIMRTAA-----DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQ-WSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~-----~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq-~sDi~ga~-~g~r~fklPNp~  250 (254)
                      ..|+++|+..+++.++.+.+     ..+||.+   ...+..++..|..  .+++|||+ .+|+.+|. +|.+++.+.++-
T Consensus        69 ~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p---~~~~~~~~~~~~~~~~~l~VGD~~~~Di~~A~~aG~~~i~v~~~~  145 (189)
T 3ib6_A           69 RVLTNFGIIDYFDFIYASNSELQPGKMEKPDK---TIFDFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPE  145 (189)
T ss_dssp             HHHHHTTCGGGEEEEEECCTTSSTTCCCTTSH---HHHHHHHHHHTCCGGGEEEEESBTTTTHHHHHHTTCEEEEECCTT
T ss_pred             HHHHhcCchhheEEEEEccccccccCCCCcCH---HHHHHHHHHcCCCcccEEEECCCcHHHHHHHHHCCCeEEEECCcc
Confidence            99999999888887777654     2446543   3444456666653  59999999 59999998 899999997764


Q ss_pred             C
Q 025360          251 Y  251 (254)
Q Consensus       251 y  251 (254)
                      .
T Consensus       146 ~  146 (189)
T 3ib6_A          146 V  146 (189)
T ss_dssp             T
T ss_pred             c
Confidence            3

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=99.62  E-value=1.7e-15  Score=130.13  Aligned_cols=98  Identities=13%  Similarity=0.095  Sum_probs=80.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.++++.|+++|++++++|++.    +.  ...|+.+|+..+++.++.+++ ..+||++   ...+..++..|.
T Consensus        94 ~~~~pg~~~ll~~L~~~g~~i~i~t~~~----~~--~~~l~~~gl~~~fd~i~~~~~~~~~KP~p---~~~~~a~~~lg~  164 (243)
T 4g9b_A           94 NAVLPGIRSLLADLRAQQISVGLASVSL----NA--PTILAALELREFFTFCADASQLKNSKPDP---EIFLAACAGLGV  164 (243)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCCT----TH--HHHHHHTTCGGGCSEECCGGGCSSCTTST---HHHHHHHHHHTS
T ss_pred             ccccccHHHHHHhhhcccccceeccccc----ch--hhhhhhhhhccccccccccccccCCCCcH---HHHHHHHHHcCC
Confidence            4689999999999999999999999987    32  346899999998888888776 5678765   333345666676


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .  .|++|||+.+|+.+|+ +|++++.+++.
T Consensus       165 ~p~e~l~VgDs~~di~aA~~aG~~~I~V~~g  195 (243)
T 4g9b_A          165 PPQACIGIEDAQAGIDAINASGMRSVGIGAG  195 (243)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEESTT
T ss_pred             ChHHEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence            4  5999999999999998 89999999865

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.61  E-value=1.9e-15  Score=126.39  Aligned_cols=97  Identities=18%  Similarity=0.204  Sum_probs=80.1

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR  222 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~  222 (254)
                      .+++||+.++++.|++ |++++++||.+    +..+...|+++|+..|++.++..+ ..+||.+   ...+..++..|..
T Consensus        83 ~~~~~g~~~~l~~L~~-~~~l~i~T~~~----~~~~~~~l~~~gl~~~f~~i~~~~-~~~Kp~p---~~~~~~~~~lg~~  153 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSS-SYPLYITTTKD----TSTAQDMAKNLEIHHFFDGIYGSS-PEAPHKA---DVIHQALQTHQLA  153 (210)
T ss_dssp             CEECTTHHHHHHHHHT-TSCEEEEEEEE----HHHHHHHHHHTTCGGGCSEEEEEC-SSCCSHH---HHHHHHHHHTTCC
T ss_pred             CCCCCCHHHHHHHHHc-CCeEEEEeCCC----HHHHHHHHHhcCchhheeeeecCC-CCCCCCh---HHHHHHHHHcCCC
Confidence            5688999999999999 99999999998    677788899999998888777765 5556543   4455567777765


Q ss_pred             --EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          223 --IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       223 --i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                        .|++|||+.+|+.+++ +|.+++.++.
T Consensus       154 p~~~~~vgDs~~Di~~a~~aG~~~i~v~~  182 (210)
T 2ah5_A          154 PEQAIIIGDTKFDMLGARETGIQKLAITW  182 (210)
T ss_dssp             GGGEEEEESSHHHHHHHHHHTCEEEEESS
T ss_pred             cccEEEECCCHHHHHHHHHCCCcEEEEcC
Confidence              4999999999999997 7999988864

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=99.59  E-value=5.7e-15  Score=122.31  Aligned_cols=142  Identities=20%  Similarity=0.261  Sum_probs=103.1

Q ss_pred             CceEEEecCCccccchhhhhh--hccCCCCC----------C---hHHHHHHHHh------CCCCCchHHHHHHHHHHHC
Q 025360          101 MDAWILDVDDTCISNVYYYKG--KRYGCDPY----------D---PAGFRAWALK------GGCPAIPGVLVLFNKLIES  159 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~--~~~g~~~~----------~---~~~~~~~~~~------~~~~~~pg~~ell~~L~~~  159 (254)
                      .++|+||+||||+++.+.+.+  ..+|....          .   .....+|...      ....++|++.++++.|+++
T Consensus         6 ~k~iifDlDGTL~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~   85 (205)
T 3m9l_A            6 IKHWVFDMDGTLTIAVHDFAAIREALSIPAEDDILTHLAALPADESAAKHAWLLEHERDLAQGSRPAPGAVELVRELAGR   85 (205)
T ss_dssp             CCEEEECTBTTTEEEEECHHHHHHHTTCCTTSCHHHHHHHSCHHHHHHHHHHHHHTHHHHEEEEEECTTHHHHHHHHHHT
T ss_pred             CCEEEEeCCCcCcccHHHHHHHHHHhCCCchHHHHHHHhcCChHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHhc
Confidence            679999999999987543322  11332111          1   1112222221      2457899999999999999


Q ss_pred             CCeEEEEeCCCccccHHHHHHHHHhCCCCCCC--cEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCccccc
Q 025360          160 GLKVILVTGRDEETFGQVTRDNLHNQGFVGYE--RLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQ  235 (254)
Q Consensus       160 G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~--~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~  235 (254)
                      |++++++||..    +..+...|+.+|+..++  ..++..+...+||.+   ...+..++..|..  .+++|||+.+|+.
T Consensus        86 g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~i~~~~~~~~kp~~---~~~~~~~~~~g~~~~~~i~iGD~~~Di~  158 (205)
T 3m9l_A           86 GYRLGILTRNA----RELAHVTLEAIGLADCFAEADVLGRDEAPPKPHP---GGLLKLAEAWDVSPSRMVMVGDYRFDLD  158 (205)
T ss_dssp             TCEEEEECSSC----HHHHHHHHHHTTCGGGSCGGGEECTTTSCCTTSS---HHHHHHHHHTTCCGGGEEEEESSHHHHH
T ss_pred             CCeEEEEeCCc----hHHHHHHHHHcCchhhcCcceEEeCCCCCCCCCH---HHHHHHHHHcCCCHHHEEEECCCHHHHH
Confidence            99999999999    77888899999998877  667766555566543   3445566777764  5999999999999


Q ss_pred             ccc-cCCcEEEeCCC
Q 025360          236 GEC-TGNRTFKLPNP  249 (254)
Q Consensus       236 ga~-~g~r~fklPNp  249 (254)
                      ++. +|.+++.+.|.
T Consensus       159 ~a~~aG~~~i~v~~~  173 (205)
T 3m9l_A          159 CGRAAGTRTVLVNLP  173 (205)
T ss_dssp             HHHHHTCEEEECSSS
T ss_pred             HHHHcCCEEEEEeCC
Confidence            988 78889988774

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.58  E-value=1.9e-14  Score=121.79  Aligned_cols=101  Identities=14%  Similarity=0.077  Sum_probs=80.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||++    +..+...|+.+|+..+++.++..++ ..+||.+   ...+..++..|
T Consensus       103 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  175 (240)
T 2no4_A          103 ELSAYPDAAETLEKLKSAGYIVAILSNGN----DEMLQAALKASKLDRVLDSCLSADDLKIYKPDP---RIYQFACDRLG  175 (240)
T ss_dssp             TCCBCTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEEGGGTTCCTTSH---HHHHHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHHCCCEEEEEcCCC----HHHHHHHHHhcCcHHHcCEEEEccccCCCCCCH---HHHHHHHHHcC
Confidence            45788999999999999999999999999    7778889999999887777776654 4556643   33444556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.++. +|.+++.++..
T Consensus       176 ~~~~~~~~iGD~~~Di~~a~~aG~~~~~v~~~  207 (240)
T 2no4_A          176 VNPNEVCFVSSNAWDLGGAGKFGFNTVRINRQ  207 (240)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCEEEEECTT
T ss_pred             CCcccEEEEeCCHHHHHHHHHCCCEEEEECCC
Confidence            54  5899999999999987 79888887543

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.57  E-value=5e-15  Score=120.80  Aligned_cols=126  Identities=20%  Similarity=0.209  Sum_probs=88.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc-------
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEET-------  173 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~-------  173 (254)
                      +++++||+||||+++...|..+                 .....++||+.++++.|+++|++++++||++ ..       
T Consensus         1 ~k~v~~D~DGtL~~~~~~~~~~-----------------~~~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~-~~~~~~~~~   62 (179)
T 3l8h_A            1 MKLIILDRDGVVNQDSDAFVKS-----------------PDEWIALPGSLQAIARLTQADWTVVLATNQS-GLARGLFDT   62 (179)
T ss_dssp             CCEEEECSBTTTBCCCTTCCCS-----------------GGGCCBCTTHHHHHHHHHHTTCEEEEEEECT-TTTTTSSCH
T ss_pred             CCEEEEcCCCccccCCCccCCC-----------------HHHceECcCHHHHHHHHHHCCCEEEEEECCC-ccccCcCCH
Confidence            4789999999999875322211                 1246789999999999999999999999998 41       


Q ss_pred             -----cHHHHHHHHHhCCCCCCCcEEEe----cCC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cC
Q 025360          174 -----FGQVTRDNLHNQGFVGYERLIMR----TAA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TG  240 (254)
Q Consensus       174 -----~r~~T~~~L~~~G~~~~~~lilr----~~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g  240 (254)
                           ..+.....|+++|.. ++.++..    .++ ..+||.+   ...+..++..|..  .+++|||+.+|+.+++ +|
T Consensus        63 ~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~KP~~---~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~aG  138 (179)
T 3l8h_A           63 ATLNAIHDKMHRALAQMGGV-VDAIFMCPHGPDDGCACRKPLP---GMYRDIARRYDVDLAGVPAVGDSLRDLQAAAQAG  138 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC-CCEEEEECCCTTSCCSSSTTSS---HHHHHHHHHHTCCCTTCEEEESSHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhCCCc-eeEEEEcCCCCCCCCCCCCCCH---HHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCC
Confidence                 014556778888921 2333322    222 3456654   3344456666664  5999999999999998 79


Q ss_pred             CcEEEeCC
Q 025360          241 NRTFKLPN  248 (254)
Q Consensus       241 ~r~fklPN  248 (254)
                      .+++.+..
T Consensus       139 ~~~i~v~~  146 (179)
T 3l8h_A          139 CAPWLVQT  146 (179)
T ss_dssp             CEEEEEST
T ss_pred             CcEEEECC
Confidence            99888864

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=99.57  E-value=9.4e-15  Score=124.41  Aligned_cols=99  Identities=16%  Similarity=0.119  Sum_probs=79.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||.+    +..+...|+++|+. +++.++.+++ ..+||.+   ...+..++..|
T Consensus       108 ~~~~~~g~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~~l~-~f~~~~~~~~~~~~Kp~p---~~~~~~~~~l~  179 (240)
T 2hi0_A          108 KTGPFPGILDLMKNLRQKGVKLAVVSNKP----NEAVQVLVEELFPG-SFDFALGEKSGIRRKPAP---DMTSECVKVLG  179 (240)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHHSTT-TCSEEEEECTTSCCTTSS---HHHHHHHHHHT
T ss_pred             cCCcCCCHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHcCCc-ceeEEEecCCCCCCCCCH---HHHHHHHHHcC
Confidence            45688999999999999999999999998    67778889999988 7777777654 5566654   33344556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .|++|||+.+|+.++. +|.+++.+++
T Consensus       180 ~~~~~~~~vGDs~~Di~~a~~aG~~~v~v~~  210 (240)
T 2hi0_A          180 VPRDKCVYIGDSEIDIQTARNSEMDEIAVNW  210 (240)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEESS
T ss_pred             CCHHHeEEEcCCHHHHHHHHHCCCeEEEECC
Confidence            54  5999999999999998 7898888764

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=99.57  E-value=3.6e-14  Score=119.65  Aligned_cols=100  Identities=22%  Similarity=0.274  Sum_probs=78.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC--cEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE--RLIMRTAA-DKGKNAVTYKSEIRKQLLE  218 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~--~lilr~~~-~~~kp~~~yK~~~r~~l~~  218 (254)
                      ...++||+.++++.|+++|++++++||.+    +......|+. |+..++  +.++.+++ ..+||.+   ...+..++.
T Consensus       106 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~-~l~~~f~~~~~~~~~~~~~~kp~~---~~~~~~~~~  177 (247)
T 3dv9_A          106 KAERMPGALEVLTKIKSEGLTPMVVTGSG----QTSLLDRLNH-NFPGIFQANLMVTAFDVKYGKPNP---EPYLMALKK  177 (247)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEECSCC-------CHHHHHH-HSTTTCCGGGEECGGGCSSCTTSS---HHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEEcCCc----hHHHHHHHHh-hHHHhcCCCeEEecccCCCCCCCC---HHHHHHHHH
Confidence            46889999999999999999999999998    5566677888 998887  77777665 4566544   344455666


Q ss_pred             cCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          219 EGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       219 ~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .|..  .+++|||+.+|+.++. +|.+++.+.+.
T Consensus       178 lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~  211 (247)
T 3dv9_A          178 GGFKPNEALVIENAPLGVQAGVAAGIFTIAVNTG  211 (247)
T ss_dssp             HTCCGGGEEEEECSHHHHHHHHHTTSEEEEECCS
T ss_pred             cCCChhheEEEeCCHHHHHHHHHCCCeEEEEcCC
Confidence            6764  5999999999999998 79999988764

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=99.57  E-value=1.7e-14  Score=121.13  Aligned_cols=101  Identities=13%  Similarity=0.031  Sum_probs=80.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++|++++++||++    +..+...|+.+|+..+++.++..++ ..+||.+   ...+..++..|
T Consensus        93 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  165 (232)
T 1zrn_A           93 RLAPFSEVPDSLRELKRRGLKLAILSNGS----PQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDN---RVYELAEQALG  165 (232)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEESGGGTCCTTSH---HHHHHHHHHHT
T ss_pred             cCCCCccHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHhcChHhhhheEEEecccCCCCCCH---HHHHHHHHHcC
Confidence            34688999999999999999999999999    6778889999999887777776654 4566643   33344556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.++. +|.+++.++..
T Consensus       166 ~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~  197 (232)
T 1zrn_A          166 LDRSAILFVASNAWDATGARYFGFPTCWINRT  197 (232)
T ss_dssp             SCGGGEEEEESCHHHHHHHHHHTCCEEEECTT
T ss_pred             CCcccEEEEeCCHHHHHHHHHcCCEEEEEcCC
Confidence            54  5899999999999997 79999887553

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=99.57  E-value=1.5e-14  Score=118.61  Aligned_cols=100  Identities=13%  Similarity=0.136  Sum_probs=81.7

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR  222 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~  222 (254)
                      .++|++.++++.|+++|++++++||..    +..+...|+.+|+..+++.++..+. ..+||.+   ...+..++..|..
T Consensus        89 ~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~~~~  161 (214)
T 3e58_A           89 LIFPDVLKVLNEVKSQGLEIGLASSSV----KADIFRALEENRLQGFFDIVLSGEEFKESKPNP---EIYLTALKQLNVQ  161 (214)
T ss_dssp             HBCTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEEGGGCSSCTTSS---HHHHHHHHHHTCC
T ss_pred             CcCchHHHHHHHHHHCCCCEEEEeCCc----HHHHHHHHHHcCcHhheeeEeecccccCCCCCh---HHHHHHHHHcCCC
Confidence            689999999999999999999999999    7788889999999887777776655 4556544   3344456666654


Q ss_pred             --EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          223 --IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       223 --i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                        .+++|||+.+|+.++. +|.+++.+.++.
T Consensus       162 ~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~~  192 (214)
T 3e58_A          162 ASRALIIEDSEKGIAAGVAADVEVWAIRDNE  192 (214)
T ss_dssp             GGGEEEEECSHHHHHHHHHTTCEEEEECCSS
T ss_pred             hHHeEEEeccHhhHHHHHHCCCEEEEECCCC
Confidence              4999999999999998 899999988753

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.56  E-value=1.6e-14  Score=127.81  Aligned_cols=169  Identities=15%  Similarity=0.097  Sum_probs=114.2

Q ss_pred             cccchHHHHHhhhcCCcchHHHHHHHHHHHHHHHHhh-----hcCCCCceEEEecCCccccchhhhhhhccCCCCCChHH
Q 025360           59 VPTQCLRYVESYMIGGQYDRDVELVVEQILCYVNEVV-----LSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAG  133 (254)
Q Consensus        59 ~p~~c~~~v~~y~~~~~Y~~d~~~v~~~a~~y~~~~~-----~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~  133 (254)
                      -+..|.+.+...   +.-..+.+.+..+...|-....     .....+..+++|+|||+.+....        .+|+   
T Consensus       115 ~~e~~~~R~~~R---~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~iD~dgtl~~~~~~--------~~~~---  180 (301)
T 1ltq_A          115 PWTELVKRNSKR---GTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAKMNGR--------GPYD---  180 (301)
T ss_dssp             CHHHHHHHHHHC---GGGCCCHHHHHHHHHHHHHHHTCCCCCCCTTSCEEEEEETBTTTBCCSSC--------CTTC---
T ss_pred             CHHHHHHHHHhc---cCCCCCHHHHHHHHHHHhcccCCcceeccccccceEEEeCCCCcccccCC--------Cchh---
Confidence            455666554431   2111234556666666643221     12233578999999999876421        1232   


Q ss_pred             HHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh--------CCCCCCCcEEEecCCCCCCCC
Q 025360          134 FRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN--------QGFVGYERLIMRTAADKGKNA  205 (254)
Q Consensus       134 ~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~--------~G~~~~~~lilr~~~~~~kp~  205 (254)
                      |.   .....+++||+.++|+.|+++|++++++|||+ +..+..+..+|++        +|++ ++.++.+++. .+||+
T Consensus       181 ~~---~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~-~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-~~kp~  254 (301)
T 1ltq_A          181 LE---KCDTDVINPMVVELSKMYALMGYQIVVVSGRE-SGTKEDPTKYYRMTRKWVEDIAGVP-LVMQCQREQG-DTRKD  254 (301)
T ss_dssp             GG---GGGGCCBCHHHHHHHHHHHHTTCEEEEEECSC-CCCSSSTTHHHHHHHHHHHHTTCCC-CSEEEECCTT-CCSCH
T ss_pred             hh---hccccCCChHHHHHHHHHHHCCCeEEEEeCCC-cccchhHHHHHHhcccccccccCCC-chheeeccCC-CCcHH
Confidence            22   33457899999999999999999999999999 7777777888888        8994 6555555543 45776


Q ss_pred             cccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEEEeC
Q 025360          206 VTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       206 ~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      +..+....+.+....++.+++|||+..|+++++ +|.+++.+.
T Consensus       255 p~~~~~~~~~~~~~~~~~~~~vgD~~~di~~a~~aG~~~~~v~  297 (301)
T 1ltq_A          255 DVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQVA  297 (301)
T ss_dssp             HHHHHHHHHHHTTTTCEEEEEEECCHHHHHHHHHTTCCEEECS
T ss_pred             HHHHHHHHHHHhccccceEEEeCCcHHHHHHHHHcCCeEEEec
Confidence            655555444453334566889999999999997 799988764

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=99.56  E-value=2.8e-14  Score=120.95  Aligned_cols=100  Identities=20%  Similarity=0.231  Sum_probs=81.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC--cEEEecCC-CCCCCCcccHHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE--RLIMRTAA-DKGKNAVTYKSEIRKQLLE  218 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~--~lilr~~~-~~~kp~~~yK~~~r~~l~~  218 (254)
                      ...++|++.++++.|+++|++++++||.+    +......|+. |+..++  +.++..++ ..+||.+   ...+..++.
T Consensus       107 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~-~l~~~f~~d~i~~~~~~~~~kp~~---~~~~~~~~~  178 (243)
T 3qxg_A          107 EAERMPGAWELLQKVKSEGLTPMVVTGSG----QLSLLERLEH-NFPGMFHKELMVTAFDVKYGKPNP---EPYLMALKK  178 (243)
T ss_dssp             CCCBCTTHHHHHHHHHHTTCEEEEECCCC----CHHHHTTHHH-HSTTTCCGGGEECTTTCSSCTTSS---HHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHcCCcEEEEeCCc----HHHHHHHHHH-hHHHhcCcceEEeHHhCCCCCCCh---HHHHHHHHH
Confidence            46799999999999999999999999998    5667778888 998888  77777765 4556543   444556677


Q ss_pred             cCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          219 EGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       219 ~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .|..  .+++|||+.+|+.++. +|.+++.+.+.
T Consensus       179 lg~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~~~  212 (243)
T 3qxg_A          179 GGLKADEAVVIENAPLGVEAGHKAGIFTIAVNTG  212 (243)
T ss_dssp             TTCCGGGEEEEECSHHHHHHHHHTTCEEEEECCS
T ss_pred             cCCCHHHeEEEeCCHHHHHHHHHCCCEEEEEeCC
Confidence            7764  4999999999999998 89999988764

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=99.56  E-value=4.8e-14  Score=117.57  Aligned_cols=102  Identities=12%  Similarity=0.017  Sum_probs=81.6

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ....++|++.++++.|+++|++++++||.+    +......|+.+|+..+++.++..+. ..+||.+   ...+..++..
T Consensus        93 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~  165 (230)
T 3um9_A           93 LSLTPFADVPQALQQLRAAGLKTAILSNGS----RHSIRQVVGNSGLTNSFDHLISVDEVRLFKPHQ---KVYELAMDTL  165 (230)
T ss_dssp             TSCCBCTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTCH---HHHHHHHHHH
T ss_pred             hcCCCCCCHHHHHHHHHhCCCeEEEEeCCC----HHHHHHHHHHCCChhhcceeEehhhcccCCCCh---HHHHHHHHHh
Confidence            356789999999999999999999999999    7778888999999887777777655 4556543   4444456666


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      |..  .+++|||+.+|+.++. +|.+++.+..+
T Consensus       166 ~~~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~  198 (230)
T 3um9_A          166 HLGESEILFVSCNSWDATGAKYFGYPVCWINRS  198 (230)
T ss_dssp             TCCGGGEEEEESCHHHHHHHHHHTCCEEEECTT
T ss_pred             CCCcccEEEEeCCHHHHHHHHHCCCEEEEEeCC
Confidence            654  5999999999999987 79999887644

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=99.55  E-value=3.2e-14  Score=119.63  Aligned_cols=100  Identities=19%  Similarity=0.199  Sum_probs=81.4

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ....++||+.++++.|+++|++++++||..    +..+...|+.+|+..+++.++..+. ..+||.+   ...+..++..
T Consensus       101 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~l  173 (237)
T 4ex6_A          101 GPRLLYPGVLEGLDRLSAAGFRLAMATSKV----EKAARAIAELTGLDTRLTVIAGDDSVERGKPHP---DMALHVARGL  173 (237)
T ss_dssp             GGGGBCTTHHHHHHHHHHTTEEEEEECSSC----HHHHHHHHHHHTGGGTCSEEECTTTSSSCTTSS---HHHHHHHHHH
T ss_pred             cCCccCCCHHHHHHHHHhCCCcEEEEcCCC----hHHHHHHHHHcCchhheeeEEeCCCCCCCCCCH---HHHHHHHHHc
Confidence            446789999999999999999999999999    7778889999999888888887765 4456543   3444456666


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      |..  .+++|||+.+|+.++. +|.+++.+.
T Consensus       174 g~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~  204 (237)
T 4ex6_A          174 GIPPERCVVIGDGVPDAEMGRAAGMTVIGVS  204 (237)
T ss_dssp             TCCGGGEEEEESSHHHHHHHHHTTCEEEEES
T ss_pred             CCCHHHeEEEcCCHHHHHHHHHCCCeEEEEe
Confidence            765  5999999999999987 899888875

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.55  E-value=3.2e-15  Score=115.72  Aligned_cols=115  Identities=10%  Similarity=0.057  Sum_probs=86.9

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.++++||+||||.++                           .+++|++.++++.|+++|++++++||++ .   ..+.
T Consensus         1 ~~k~i~~D~DgtL~~~---------------------------~~~~~~~~~~l~~L~~~G~~~~i~S~~~-~---~~~~   49 (137)
T 2pr7_A            1 GMRGLIVDYAGVLDGT---------------------------DEDQRRWRNLLAAAKKNGVGTVILSNDP-G---GLGA   49 (137)
T ss_dssp             CCCEEEECSTTTTSSC---------------------------HHHHHHHHHHHHHHHHTTCEEEEEECSC-C---GGGG
T ss_pred             CCcEEEEeccceecCC---------------------------CccCccHHHHHHHHHHCCCEEEEEeCCC-H---HHHH
Confidence            3679999999999432                           3478999999999999999999999998 3   3345


Q ss_pred             HHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          180 DNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..|+.+|+..+++.++.+.+ ..+||.+   ...+..+++.|..  .+++|||+.+|+.+++ +|.+++.+..
T Consensus        50 ~~l~~~~l~~~f~~i~~~~~~~~~Kp~~---~~~~~~~~~~~~~~~~~~~vgD~~~di~~a~~~G~~~i~~~~  119 (137)
T 2pr7_A           50 APIRELETNGVVDKVLLSGELGVEKPEE---AAFQAAADAIDLPMRDCVLVDDSILNVRGAVEAGLVGVYYQQ  119 (137)
T ss_dssp             HHHHHHHHTTSSSEEEEHHHHSCCTTSH---HHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTCEEEECSC
T ss_pred             HHHHHCChHhhccEEEEeccCCCCCCCH---HHHHHHHHHcCCCcccEEEEcCCHHHHHHHHHCCCEEEEeCC
Confidence            66777788777766666544 4566643   3344456666654  5899999999999988 7888876643

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.54  E-value=5.5e-15  Score=124.00  Aligned_cols=125  Identities=10%  Similarity=0.015  Sum_probs=86.4

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++|+||+||||++.. +..    ....+.        ......++||+.++|+.|+++|++++++||++    +..+.
T Consensus         5 ~~kav~fDlDGTL~d~~-~~~----~~~~~~--------~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~----~~~~~   67 (196)
T 2oda_A            5 TFPALLFGLSGCLVDFG-AQA----ATSDTP--------DDEHAQLTPGAQNALKALRDQGMPCAWIDELP----EALST   67 (196)
T ss_dssp             CCSCEEEETBTTTBCTT-STT----TSCSSC--------CGGGGSBCTTHHHHHHHHHHHTCCEEEECCSC----HHHHH
T ss_pred             cCCEEEEcCCCceEecc-ccc----cchhhc--------ccccCCcCcCHHHHHHHHHHCCCEEEEEcCCh----HHHHH
Confidence            47899999999999821 000    000000        01235789999999999999999999999999    45444


Q ss_pred             HHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC---cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          180 DNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY---RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy---~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      +.+.   +  +++.++.+++ ..+||.+   ......++..|.   ..+++|||+.+|+++|+ +|++++.+...
T Consensus        68 ~~~~---~--~~d~v~~~~~~~~~KP~p---~~~~~a~~~l~~~~~~~~v~VGDs~~Di~aA~~aG~~~i~v~~g  134 (196)
T 2oda_A           68 PLAA---P--VNDWMIAAPRPTAGWPQP---DACWMALMALNVSQLEGCVLISGDPRLLQSGLNAGLWTIGLASC  134 (196)
T ss_dssp             HHHT---T--TTTTCEECCCCSSCTTST---HHHHHHHHHTTCSCSTTCEEEESCHHHHHHHHHHTCEEEEESSS
T ss_pred             HhcC---c--cCCEEEECCcCCCCCCCh---HHHHHHHHHcCCCCCccEEEEeCCHHHHHHHHHCCCEEEEEccC
Confidence            3332   2  4455555554 4567654   334445666775   34899999999999998 79999988653

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=99.54  E-value=4.5e-14  Score=117.81  Aligned_cols=100  Identities=19%  Similarity=0.090  Sum_probs=81.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...+.|++.++++.|+++|++++++|+..    +..+...|+..|+..+++.++..+. ..+||.+   ...+..++..|
T Consensus        89 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~l~  161 (233)
T 3s6j_A           89 QIIALPGAVELLETLDKENLKWCIATSGG----IDTATINLKALKLDINKINIVTRDDVSYGKPDP---DLFLAAAKKIG  161 (233)
T ss_dssp             GCEECTTHHHHHHHHHHTTCCEEEECSSC----HHHHHHHHHTTTCCTTSSCEECGGGSSCCTTST---HHHHHHHHHTT
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCc----hhhHHHHHHhcchhhhhheeeccccCCCCCCCh---HHHHHHHHHhC
Confidence            36789999999999999999999999999    7778889999999887777777655 4456543   44455667777


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+.+|+.++. +|.+++.+.+
T Consensus       162 ~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~  192 (233)
T 3s6j_A          162 APIDECLVIGDAIWDMLAARRCKATGVGLLS  192 (233)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHTTCEEEEEGG
T ss_pred             CCHHHEEEEeCCHHhHHHHHHCCCEEEEEeC
Confidence            64  5999999999999988 7888888754

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=99.53  E-value=5.7e-14  Score=120.04  Aligned_cols=100  Identities=15%  Similarity=0.059  Sum_probs=79.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||.+    +..+...|+++|+..+++.++.++. ...||.+   ......++..|
T Consensus       112 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  184 (243)
T 2hsz_A          112 ISRLYPNVKETLEALKAQGYILAVVTNKP----TKHVQPILTAFGIDHLFSEMLGGQSLPEIKPHP---APFYYLCGKFG  184 (243)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHTTCGGGCSEEECTTTSSSCTTSS---HHHHHHHHHHT
T ss_pred             cCccCCCHHHHHHHHHHCCCEEEEEECCc----HHHHHHHHHHcCchheEEEEEecccCCCCCcCH---HHHHHHHHHhC
Confidence            45788999999999999999999999999    6778889999999887777777655 4456543   33344555556


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+.+|+.++. +|..++.+.+
T Consensus       185 ~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~  215 (243)
T 2hsz_A          185 LYPKQILFVGDSQNDIFAAHSAGCAVVGLTY  215 (243)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEESS
T ss_pred             cChhhEEEEcCCHHHHHHHHHCCCeEEEEcC
Confidence            54  5999999999999987 7988888865

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=99.53  E-value=7.4e-14  Score=116.33  Aligned_cols=99  Identities=16%  Similarity=0.166  Sum_probs=80.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++|++++++||..    +..+...|+.+|+..+++.++..+. ..+||.+   ...+..++..|
T Consensus        84 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~lg  156 (226)
T 3mc1_A           84 ENKVYDGIEALLSSLKDYGFHLVVATSKP----TVFSKQILEHFKLAFYFDAIVGSSLDGKLSTKE---DVIRYAMESLN  156 (226)
T ss_dssp             SCCBCTTHHHHHHHHHHHTCEEEEEEEEE----HHHHHHHHHHTTCGGGCSEEEEECTTSSSCSHH---HHHHHHHHHHT
T ss_pred             cCccCcCHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHHhCCHhheeeeeccCCCCCCCCCH---HHHHHHHHHhC
Confidence            35799999999999999999999999998    7788899999999887777776655 4455532   44455566667


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      ..  .+++|||+.+|+.++. +|.+++.+.
T Consensus       157 i~~~~~i~iGD~~~Di~~a~~aG~~~i~v~  186 (226)
T 3mc1_A          157 IKSDDAIMIGDREYDVIGALKNNLPSIGVT  186 (226)
T ss_dssp             CCGGGEEEEESSHHHHHHHHTTTCCEEEES
T ss_pred             cCcccEEEECCCHHHHHHHHHCCCCEEEEc
Confidence            65  6999999999999887 788888875

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=99.53  E-value=4.8e-14  Score=118.75  Aligned_cols=100  Identities=19%  Similarity=0.198  Sum_probs=79.2

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+++|++++++||.+    +..+...|+.+|+..+++.++.+++ ..+||.+   ...+..++..|
T Consensus        81 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~---~~~~~~~~~~~  153 (222)
T 2nyv_A           81 YTKPYPEIPYTLEALKSKGFKLAVVSNKL----EELSKKILDILNLSGYFDLIVGGDTFGEKKPSP---TPVLKTLEILG  153 (222)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHTTCGGGCSEEECTTSSCTTCCTT---HHHHHHHHHHT
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEcCCC----HHHHHHHHHHcCCHHHheEEEecCcCCCCCCCh---HHHHHHHHHhC
Confidence            46789999999999999999999999998    7778889999999877777776654 3455543   33334455556


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+.+|+.++. +|.+++.+.+
T Consensus       154 ~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~  184 (222)
T 2nyv_A          154 EEPEKALIVGDTDADIEAGKRAGTKTALALW  184 (222)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEETT
T ss_pred             CCchhEEEECCCHHHHHHHHHCCCeEEEEcC
Confidence            53  5999999999999988 7888887754

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=99.53  E-value=3.8e-14  Score=118.91  Aligned_cols=101  Identities=20%  Similarity=0.268  Sum_probs=80.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...+.|++.++++.|+++|++++++||.+    +..+...|+..|+..+++.++..++ ..+||.+   ...+..++..|
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~----~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~---~~~~~~~~~lg  173 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKN----GERLRSEIHHKNLTHYFDSIIGSGDTGTIKPSP---EPVLAALTNIN  173 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHTTCGGGCSEEEEETSSSCCTTSS---HHHHHHHHHHT
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCC----HHHHHHHHHHCCchhheeeEEcccccCCCCCCh---HHHHHHHHHcC
Confidence            56789999999999999999999999998    7788889999999887777766655 5566644   33344555666


Q ss_pred             C--c-EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 Y--R-IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y--~-i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .  . .+++|||+.+|+.++. +|.+++.+.|.
T Consensus       174 i~~~~~~v~vGD~~~Di~~a~~aG~~~v~~~~~  206 (231)
T 3kzx_A          174 IEPSKEVFFIGDSISDIQSAIEAGCLPIKYGST  206 (231)
T ss_dssp             CCCSTTEEEEESSHHHHHHHHHTTCEEEEECC-
T ss_pred             CCcccCEEEEcCCHHHHHHHHHCCCeEEEECCC
Confidence            5  3 6899999999999998 78888888554

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=99.53  E-value=4.6e-14  Score=118.35  Aligned_cols=96  Identities=15%  Similarity=0.116  Sum_probs=70.9

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc-
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR-  222 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~-  222 (254)
                      ++||+.++++.|+++|++++++||.+    +  +...|+.+|+..+++.++.+++ ..+||.+.   ..+..++..|.. 
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~----~--~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~---~~~~~~~~lgi~~  163 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSR----N--APKILRRLAIIDDFHAIVDPTTLAKGKPDPD---IFLTAAAMLDVSP  163 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCT----T--HHHHHHHTTCTTTCSEECCC---------CC---HHHHHHHHHTSCG
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCch----h--HHHHHHHcCcHhhcCEEeeHhhCCCCCCChH---HHHHHHHHcCCCH
Confidence            79999999999999999999999987    3  5678899999888887776655 45565442   233455666654 


Q ss_pred             -EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          223 -IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       223 -i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                       .+++|||+.+|+.++. +|..++.+.++
T Consensus       164 ~~~i~vGDs~~Di~~a~~aG~~~~~~~~~  192 (233)
T 3nas_A          164 ADCAAIEDAEAGISAIKSAGMFAVGVGQG  192 (233)
T ss_dssp             GGEEEEECSHHHHHHHHHTTCEEEECC--
T ss_pred             HHEEEEeCCHHHHHHHHHcCCEEEEECCc
Confidence             5999999999999998 88888887543

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=99.53  E-value=4.7e-14  Score=118.41  Aligned_cols=143  Identities=16%  Similarity=0.091  Sum_probs=92.7

Q ss_pred             CceEEEecCCccccchhhhhh-hccCCC----C-C-----------------------ChHHHHHHHHhCCCCCchHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKG-KRYGCD----P-Y-----------------------DPAGFRAWALKGGCPAIPGVLV  151 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~-~~~g~~----~-~-----------------------~~~~~~~~~~~~~~~~~pg~~e  151 (254)
                      .++||||+||||+++.....- ..+|..    . +                       ..+.+.++......+++||+.+
T Consensus        14 ~k~viFD~DGTLvd~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   93 (225)
T 1nnl_A           14 ADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRE   93 (225)
T ss_dssp             CSEEEEETBTTTBSSCHHHHHHHHTTCTTTC------------CHHHHHHHHHHHHCCCHHHHHHHHHHSCCCBCTTHHH
T ss_pred             CCEEEEeCcccccccccHHHHHHHhCCcHHHHHHHHHHHcCCccHHHHHHHHHHHhcCCHHHHHHHHHhccCCCCccHHH
Confidence            579999999999998653211 112210    0 0                       0112223333345789999999


Q ss_pred             HHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC--CCcEE---------EecCCCCCCCCcccH-HHHHHHHHHc
Q 025360          152 LFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG--YERLI---------MRTAADKGKNAVTYK-SEIRKQLLEE  219 (254)
Q Consensus       152 ll~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~--~~~li---------lr~~~~~~kp~~~yK-~~~r~~l~~~  219 (254)
                      +++.|+++|++++++||++    +..+...|+++|+..  ++..+         ...+.........-| ...+..++..
T Consensus        94 ~l~~L~~~g~~~~i~T~~~----~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Kp~~~~~~~~~~  169 (225)
T 1nnl_A           94 LVSRLQERNVQVFLISGGF----RSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKF  169 (225)
T ss_dssp             HHHHHHHTTCEEEEEEEEE----HHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCcEEEEeCCh----HHHHHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccCCCchHHHHHHHHHHc
Confidence            9999999999999999999    778889999999973  33322         122211100000012 2344445666


Q ss_pred             CCcEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          220 GYRIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      |...+++|||+.+|+.+++ +|. ++.+.+
T Consensus       170 ~~~~~~~vGDs~~Di~~a~~ag~-~i~~~~  198 (225)
T 1nnl_A          170 HFKKIIMIGDGATDMEACPPADA-FIGFGG  198 (225)
T ss_dssp             CCSCEEEEESSHHHHTTTTTSSE-EEEECS
T ss_pred             CCCcEEEEeCcHHhHHHHHhCCe-EEEecC
Confidence            7777999999999999998 676 776643

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=99.53  E-value=5.7e-14  Score=117.56  Aligned_cols=101  Identities=18%  Similarity=0.132  Sum_probs=80.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++|++++++||.+    +......|+.+|+..+++.++..+. ..+||.+   ...+..++..|
T Consensus        97 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~~  169 (233)
T 3umb_A           97 CLSAFPENVPVLRQLREMGLPLGILSNGN----PQMLEIAVKSAGMSGLFDHVLSVDAVRLYKTAP---AAYALAPRAFG  169 (233)
T ss_dssp             SCEECTTHHHHHHHHHTTTCCEEEEESSC----HHHHHHHHHTTTCTTTCSEEEEGGGTTCCTTSH---HHHTHHHHHHT
T ss_pred             cCCCCCCHHHHHHHHHhCCCcEEEEeCCC----HHHHHHHHHHCCcHhhcCEEEEecccCCCCcCH---HHHHHHHHHhC
Confidence            46789999999999999999999999999    7778888999999888877777655 4556643   33444556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.++. +|.+++.+...
T Consensus       170 ~~~~~~~~vGD~~~Di~~a~~~G~~~~~v~~~  201 (233)
T 3umb_A          170 VPAAQILFVSSNGWDACGATWHGFTTFWINRL  201 (233)
T ss_dssp             SCGGGEEEEESCHHHHHHHHHHTCEEEEECTT
T ss_pred             CCcccEEEEeCCHHHHHHHHHcCCEEEEEcCC
Confidence            54  5999999999999988 79888887543

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=99.52  E-value=7.4e-14  Score=114.74  Aligned_cols=99  Identities=14%  Similarity=0.114  Sum_probs=77.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++| +++++||.+    +......|+.+|+..+++.++.+.. ..+||.+   ...+..++..|
T Consensus        84 ~~~~~~~~~~~l~~l~~~g-~~~i~s~~~----~~~~~~~l~~~~~~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  155 (200)
T 3cnh_A           84 QSQPRPEVLALARDLGQRY-RMYSLNNEG----RDLNEYRIRTFGLGEFLLAFFTSSALGVMKPNP---AMYRLGLTLAQ  155 (200)
T ss_dssp             TCCBCHHHHHHHHHHTTTS-EEEEEECCC----HHHHHHHHHHHTGGGTCSCEEEHHHHSCCTTCH---HHHHHHHHHHT
T ss_pred             cCccCccHHHHHHHHHHcC-CEEEEeCCc----HHHHHHHHHhCCHHHhcceEEeecccCCCCCCH---HHHHHHHHHcC
Confidence            3569999999999999999 999999999    7777888899999877766666544 4566643   33444556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+.+|+.++. +|.+++.+.+
T Consensus       156 ~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~  186 (200)
T 3cnh_A          156 VRPEEAVMVDDRLQNVQAARAVGMHAVQCVD  186 (200)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHTTCEEEECSC
T ss_pred             CCHHHeEEeCCCHHHHHHHHHCCCEEEEECC
Confidence            54  5999999999999997 7988888765

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=99.51  E-value=3.6e-14  Score=117.08  Aligned_cols=98  Identities=14%  Similarity=0.110  Sum_probs=78.9

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.+ ++.|+++ ++++++||++    +..+...|+.+|+..+++.++.+++ ..+||.+   ......++..|.
T Consensus        73 ~~~~~~~~~-l~~l~~~-~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~~  143 (201)
T 2w43_A           73 LKAYEDTKY-LKEISEI-AEVYALSNGS----INEVKQHLERNGLLRYFKGIFSAESVKEYKPSP---KVYKYFLDSIGA  143 (201)
T ss_dssp             CEECGGGGG-HHHHHHH-SEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTCH---HHHHHHHHHHTC
T ss_pred             cccCCChHH-HHHHHhC-CeEEEEeCcC----HHHHHHHHHHCCcHHhCcEEEehhhcCCCCCCH---HHHHHHHHhcCC
Confidence            578999999 9999999 9999999999    7788889999999887777777655 4566643   334445556665


Q ss_pred             cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          222 RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..+++|||+.+|+.++. +|.+++.++..
T Consensus       144 ~~~~~vGD~~~Di~~a~~aG~~~~~~~~~  172 (201)
T 2w43_A          144 KEAFLVSSNAFDVIGAKNAGMRSIFVNRK  172 (201)
T ss_dssp             SCCEEEESCHHHHHHHHHTTCEEEEECSS
T ss_pred             CcEEEEeCCHHHhHHHHHCCCEEEEECCC
Confidence            56999999999999987 79999887653

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=99.51  E-value=4.7e-14  Score=118.51  Aligned_cols=98  Identities=17%  Similarity=0.171  Sum_probs=72.3

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++||+.++++.|+++|++++++||.+    +. +...|+.+|+..+++.++.+++ ..+||.+..   .+..+++.|.
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~Tn~~----~~-~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~---~~~~~~~~~~  165 (220)
T 2zg6_A           94 AFLYDDTLEFLEGLKSNGYKLALVSNAS----PR-VKTLLEKFDLKKYFDALALSYEIKAVKPNPKI---FGFALAKVGY  165 (220)
T ss_dssp             EEECTTHHHHHHHHHTTTCEEEECCSCH----HH-HHHHHHHHTCGGGCSEEC-----------CCH---HHHHHHHHCS
T ss_pred             ceECcCHHHHHHHHHHCCCEEEEEeCCc----HH-HHHHHHhcCcHhHeeEEEeccccCCCCCCHHH---HHHHHHHcCC
Confidence            4688999999999999999999999988    43 6788999999887777766654 456765532   2335666788


Q ss_pred             cEEEEEcCCcc-cccccc-cCCcEEEeCCC
Q 025360          222 RIWGNIGDQWS-DLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       222 ~i~~~IGDq~s-Di~ga~-~g~r~fklPNp  249 (254)
                      .. ++|||+.+ |+.+|+ +|.+++.+...
T Consensus       166 ~~-~~vgD~~~~Di~~a~~aG~~~i~v~~~  194 (220)
T 2zg6_A          166 PA-VHVGDIYELDYIGAKRSYVDPILLDRY  194 (220)
T ss_dssp             SE-EEEESSCCCCCCCSSSCSEEEEEBCTT
T ss_pred             Ce-EEEcCCchHhHHHHHHCCCeEEEECCC
Confidence            88 99999998 999998 79999888653

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.50  E-value=1e-13  Score=116.87  Aligned_cols=126  Identities=17%  Similarity=0.120  Sum_probs=91.5

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc-----
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF-----  174 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~-----  174 (254)
                      ..++++||+||||+....|...                  .....++||+.++|+.|+++|++++++||++ ...     
T Consensus        24 ~~k~v~~D~DGTL~~~~~~~~~------------------~~~~~~~pg~~e~L~~L~~~G~~~~ivTn~~-~~~~~~~~   84 (211)
T 2gmw_A           24 SVPAIFLDRDGTINVDHGYVHE------------------IDNFEFIDGVIDAMRELKKMGFALVVVTNQS-GIARGKFT   84 (211)
T ss_dssp             CBCEEEECSBTTTBCCCSSCCS------------------GGGCCBCTTHHHHHHHHHHTTCEEEEEEECT-HHHHTSSC
T ss_pred             cCCEEEEcCCCCeECCCCcccC------------------cccCcCCcCHHHHHHHHHHCCCeEEEEECcC-CcCCCccC
Confidence            3679999999999976422110                  1236789999999999999999999999998 321     


Q ss_pred             -------HHHHHHHHHhCCCCCCCcEEEecC------------CCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCccc
Q 025360          175 -------GQVTRDNLHNQGFVGYERLIMRTA------------ADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSD  233 (254)
Q Consensus       175 -------r~~T~~~L~~~G~~~~~~lilr~~------------~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sD  233 (254)
                             +..+...|+++|+. ++.++..+.            ...+||.+   ...+..++..|.  ..+++|||+.+|
T Consensus        85 ~~~~~~~~~~~~~~l~~~gl~-f~~~~~~~~~~~~~~~~~~~~~~~~KP~p---~~~~~~~~~lgi~~~~~~~VGD~~~D  160 (211)
T 2gmw_A           85 EAQFETLTEWMDWSLADRDVD-LDGIYYCPHHPQGSVEEFRQVCDCRKPHP---GMLLSARDYLHIDMAASYMVGDKLED  160 (211)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSEEEEECCBTTCSSGGGBSCCSSSTTSC---HHHHHHHHHHTBCGGGCEEEESSHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCc-eEEEEECCcCCCCcccccCccCcCCCCCH---HHHHHHHHHcCCCHHHEEEEcCCHHH
Confidence                   25667889999998 666565532            12356544   233334555554  358999999999


Q ss_pred             ccccc-cCCcE-EEeCC
Q 025360          234 LQGEC-TGNRT-FKLPN  248 (254)
Q Consensus       234 i~ga~-~g~r~-fklPN  248 (254)
                      +.++. +|.++ +.+.+
T Consensus       161 i~~a~~aG~~~~i~v~~  177 (211)
T 2gmw_A          161 MQAAVAANVGTKVLVRT  177 (211)
T ss_dssp             HHHHHHTTCSEEEEESS
T ss_pred             HHHHHHCCCceEEEEec
Confidence            99987 89998 87754

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=99.50  E-value=1.1e-13  Score=117.73  Aligned_cols=101  Identities=14%  Similarity=0.101  Sum_probs=78.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCCCCcEEEecC--C-CCCCCCcccHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVGYERLIMRTA--A-DKGKNAVTYKSEIRKQLL  217 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~~~~lilr~~--~-~~~kp~~~yK~~~r~~l~  217 (254)
                      ...++|++.++++.|+++|++++++||..    +......|.+ .|+..+++.++..+  . ..+||.+   ...+..++
T Consensus       110 ~~~~~~~~~~~l~~l~~~g~~~~i~sn~~----~~~~~~~l~~~~~l~~~f~~~~~~~~~~~~~~Kp~~---~~~~~~~~  182 (250)
T 3l5k_A          110 TAALMPGAEKLIIHLRKHGIPFALATSSR----SASFDMKTSRHKEFFSLFSHIVLGDDPEVQHGKPDP---DIFLACAK  182 (250)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCCEEEECSCC----HHHHHHHTTTCHHHHTTSSCEECTTCTTCCSCTTST---HHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHhCCCcEEEEeCCC----HHHHHHHHHhccCHHhheeeEEecchhhccCCCCCh---HHHHHHHH
Confidence            46799999999999999999999999999    6666666655 37776777677665  3 4456543   44455677


Q ss_pred             HcCC----cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          218 EEGY----RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       218 ~~Gy----~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..|.    ..+++|||+.+|+.++. +|.+++.+.+.
T Consensus       183 ~lgi~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~  219 (250)
T 3l5k_A          183 RFSPPPAMEKCLVFEDAPNGVEAALAAGMQVVMVPDG  219 (250)
T ss_dssp             TSSSCCCGGGEEEEESSHHHHHHHHHTTCEEEECCCT
T ss_pred             HcCCCCCcceEEEEeCCHHHHHHHHHcCCEEEEEcCC
Confidence            7775    56999999999999998 89898887653

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=99.49  E-value=2e-13  Score=118.50  Aligned_cols=99  Identities=20%  Similarity=0.190  Sum_probs=78.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++|+.|++ |++++++||.+    +..+...|+.+|+..|++.++.+++ ..+||.+   ...+..++..|
T Consensus       119 ~~~~~~g~~~~L~~L~~-~~~l~i~Tn~~----~~~~~~~l~~~gl~~~f~~i~~~~~~~~~KP~p---~~~~~~~~~~~  190 (260)
T 2gfh_A          119 HMILADDVKAMLTELRK-EVRLLLLTNGD----RQTQREKIEACACQSYFDAIVIGGEQKEEKPAP---SIFYHCCDLLG  190 (260)
T ss_dssp             TCCCCHHHHHHHHHHHT-TSEEEEEECSC----HHHHHHHHHHHTCGGGCSEEEEGGGSSSCTTCH---HHHHHHHHHHT
T ss_pred             cCCCCcCHHHHHHHHHc-CCcEEEEECcC----hHHHHHHHHhcCHHhhhheEEecCCCCCCCCCH---HHHHHHHHHcC
Confidence            46789999999999998 59999999999    7778889999999888877666654 4567654   33444566666


Q ss_pred             Cc--EEEEEcCC-cccccccc-cCC-cEEEeCC
Q 025360          221 YR--IWGNIGDQ-WSDLQGEC-TGN-RTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq-~sDi~ga~-~g~-r~fklPN  248 (254)
                      ..  .+++|||+ .+|+.+|+ +|. +++.+.+
T Consensus       191 ~~~~~~~~vGDs~~~Di~~A~~aG~~~~i~v~~  223 (260)
T 2gfh_A          191 VQPGDCVMVGDTLETDIQGGLNAGLKATVWINK  223 (260)
T ss_dssp             CCGGGEEEEESCTTTHHHHHHHTTCSEEEEECT
T ss_pred             CChhhEEEECCCchhhHHHHHHCCCceEEEEcC
Confidence            54  59999995 89999998 798 6777754

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.49  E-value=2.6e-14  Score=117.57  Aligned_cols=130  Identities=22%  Similarity=0.258  Sum_probs=90.4

Q ss_pred             cCCCCceEEEecCCccccchh--hhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc-
Q 025360           97 SGDGMDAWILDVDDTCISNVY--YYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEET-  173 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~--~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~-  173 (254)
                      .+++.++++||+||||+.+..  |+..        .         ....+++||+.++|+.|+++|++++++||.. .. 
T Consensus        10 ~~~~~k~~~~D~Dgtl~~~~~~~~~~~--------~---------~~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~-~~~   71 (176)
T 2fpr_A           10 HGSSQKYLFIDRDGTLISEPPSDFQVD--------R---------FDKLAFEPGVIPQLLKLQKAGYKLVMITNQD-GLG   71 (176)
T ss_dssp             ---CCEEEEECSBTTTBCCC--CCCCC--------S---------GGGCCBCTTHHHHHHHHHHTTEEEEEEEECT-TTT
T ss_pred             cCCcCcEEEEeCCCCeEcCCCCCcCcC--------C---------HHHCcCCccHHHHHHHHHHCCCEEEEEECCc-ccc
Confidence            357899999999999998742  1110        0         1146799999999999999999999999983 10 


Q ss_pred             -----------cHHHHHHHHHhCCCCCCCcEEEe-----cCCCCCCCCc-ccHHHHHHHHHHcCC--cEEEEEcCCcccc
Q 025360          174 -----------FGQVTRDNLHNQGFVGYERLIMR-----TAADKGKNAV-TYKSEIRKQLLEEGY--RIWGNIGDQWSDL  234 (254)
Q Consensus       174 -----------~r~~T~~~L~~~G~~~~~~lilr-----~~~~~~kp~~-~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi  234 (254)
                                 .+..+...|+.+|+. ++.++.+     .+...+||.+ .|..    .+++.|.  ..+++|||+.+|+
T Consensus        72 ~~~~~~~~~~~~~~~~~~~l~~~gl~-fd~v~~s~~~~~~~~~~~KP~p~~~~~----~~~~~gi~~~~~l~VGD~~~Di  146 (176)
T 2fpr_A           72 TQSFPQADFDGPHNLMMQIFTSQGVQ-FDEVLICPHLPADECDCRKPKVKLVER----YLAEQAMDRANSYVIGDRATDI  146 (176)
T ss_dssp             BTTBCHHHHHHHHHHHHHHHHHTTCC-EEEEEEECCCGGGCCSSSTTSCGGGGG----GC----CCGGGCEEEESSHHHH
T ss_pred             ccccchHhhhhhHHHHHHHHHHcCCC-eeEEEEcCCCCcccccccCCCHHHHHH----HHHHcCCCHHHEEEEcCCHHHH
Confidence                       266778889999998 5555555     2224567765 3333    2333444  3589999999999


Q ss_pred             cccc-cCCcEEEeCCC
Q 025360          235 QGEC-TGNRTFKLPNP  249 (254)
Q Consensus       235 ~ga~-~g~r~fklPNp  249 (254)
                      .+|. +|.+++.+...
T Consensus       147 ~~A~~aG~~~i~v~~~  162 (176)
T 2fpr_A          147 QLAENMGINGLRYDRE  162 (176)
T ss_dssp             HHHHHHTSEEEECBTT
T ss_pred             HHHHHcCCeEEEEcCC
Confidence            9998 79998877543

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=99.49  E-value=2.7e-13  Score=115.99  Aligned_cols=98  Identities=12%  Similarity=0.029  Sum_probs=78.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+++||+.++++.|+  |++++++||++    +..+...|+.+|+..+++.++..++ ..+||.+   ...+..++..|
T Consensus        91 ~~~~~~~~~~~l~~l~--g~~~~i~t~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  161 (253)
T 1qq5_A           91 RLTPYPDAAQCLAELA--PLKRAILSNGA----PDMLQALVANAGLTDSFDAVISVDAKRVFKPHP---DSYALVEEVLG  161 (253)
T ss_dssp             SCCBCTTHHHHHHHHT--TSEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTSH---HHHHHHHHHHC
T ss_pred             cCCCCccHHHHHHHHc--CCCEEEEeCcC----HHHHHHHHHHCCchhhccEEEEccccCCCCCCH---HHHHHHHHHcC
Confidence            3478899999999999  99999999999    7778889999999887777776655 4566643   33444566666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+.+|+.++. +|.+++.+..
T Consensus       162 ~~~~~~~~vGD~~~Di~~a~~aG~~~~~~~~  192 (253)
T 1qq5_A          162 VTPAEVLFVSSNGFDVGGAKNFGFSVARVAR  192 (253)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCEEEEECC
T ss_pred             CCHHHEEEEeCChhhHHHHHHCCCEEEEECC
Confidence            54  5999999999999997 7999888865

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.49  E-value=7.5e-14  Score=115.23  Aligned_cols=133  Identities=12%  Similarity=0.047  Sum_probs=90.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCCh----HHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDP----AGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~----~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      +++|+||+||||++...   ....+ .++..    ..++.+  ....++.||+.++++.|+++|++++++||++ .  +.
T Consensus        27 ~k~vifDlDGTL~~~~~---~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~-~--~~   97 (187)
T 2wm8_A           27 PKLAVFDLDYTLWPFWV---DTHVD-PPFHKSSDGTVRDRR--GQDVRLYPEVPEVLKRLQSLGVPGAAASRTS-E--IE   97 (187)
T ss_dssp             CSEEEECSBTTTBSSCT---TTSSC-SCCEECTTSCEECTT--CCEECCCTTHHHHHHHHHHHTCCEEEEECCS-C--HH
T ss_pred             cCEEEEcCCCCcchHHH---hhccC-cchhhhcccchhhcc--CcccCcchhHHHHHHHHHHCCceEEEEeCCC-C--hH
Confidence            68999999999985421   11111 11100    000000  1235789999999999999999999999998 3  46


Q ss_pred             HHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          177 VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       177 ~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .+...|+.+|+..+++.+.....  .|     ....+..+++.|..  .+++|||+.+|+.++. +|.+++.+++.
T Consensus        98 ~~~~~l~~~gl~~~f~~~~~~~~--~k-----~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~i~v~~g  166 (187)
T 2wm8_A           98 GANQLLELFDLFRYFVHREIYPG--SK-----ITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTCIHIQNG  166 (187)
T ss_dssp             HHHHHHHHTTCTTTEEEEEESSS--CH-----HHHHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEEEECSSS
T ss_pred             HHHHHHHHcCcHhhcceeEEEeC--ch-----HHHHHHHHHHcCCChHHEEEEeCCccChHHHHHcCCEEEEECCC
Confidence            77888999999887765433221  12     13344455666654  5899999999999887 79999988764

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=99.49  E-value=1.8e-13  Score=115.97  Aligned_cols=99  Identities=16%  Similarity=0.174  Sum_probs=79.2

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.++++.|+++|++++++||..    +..+...|+.+|+..+++.++..+. ..+||.+   ...+..++..|.
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~g~  165 (241)
T 2hoq_A           93 LREVPGARKVLIRLKELGYELGIITDGN----PVKQWEKILRLELDDFFEHVIISDFEGVKKPHP---KIFKKALKAFNV  165 (241)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEECSC----HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTCH---HHHHHHHHHHTC
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEECCC----chhHHHHHHHcCcHhhccEEEEeCCCCCCCCCH---HHHHHHHHHcCC
Confidence            5689999999999999999999999998    6777889999999887777766554 4556543   334445666665


Q ss_pred             c--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      .  .+++|||+. +|+.++. +|.+++.++.
T Consensus       166 ~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~  196 (241)
T 2hoq_A          166 KPEEALMVGDRLYSDIYGAKRVGMKTVWFRY  196 (241)
T ss_dssp             CGGGEEEEESCTTTTHHHHHHTTCEEEEECC
T ss_pred             CcccEEEECCCchHhHHHHHHCCCEEEEECC
Confidence            4  599999998 9999987 8999888854

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=99.49  E-value=2.9e-13  Score=109.97  Aligned_cols=98  Identities=17%  Similarity=0.136  Sum_probs=76.8

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++|++.++++.|+++|++++++||.+ +    .+...|+.+|+..+++.++.+++ ..+||.+   ...+..++..|.
T Consensus        81 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~-~----~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~~~  152 (190)
T 2fi1_A           81 PILFEGVSDLLEDISNQGGRHFLVSHRN-D----QVLEILEKTSIAAYFTEVVTSSSGFKRKPNP---ESMLYLREKYQI  152 (190)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSC-T----HHHHHHHHTTCGGGEEEEECGGGCCCCTTSC---HHHHHHHHHTTC
T ss_pred             CccCcCHHHHHHHHHHCCCcEEEEECCc-H----HHHHHHHHcCCHhheeeeeeccccCCCCCCH---HHHHHHHHHcCC
Confidence            3489999999999999999999999987 3    35678899999887777776654 4455543   344455666676


Q ss_pred             cEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          222 RIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..+++|||+.+|+.++. +|..++.+.+
T Consensus       153 ~~~~~iGD~~~Di~~a~~aG~~~~~~~~  180 (190)
T 2fi1_A          153 SSGLVIGDRPIDIEAGQAAGLDTHLFTS  180 (190)
T ss_dssp             SSEEEEESSHHHHHHHHHTTCEEEECSC
T ss_pred             CeEEEEcCCHHHHHHHHHcCCeEEEECC
Confidence            68999999999999987 7888887754

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=99.49  E-value=6.7e-13  Score=110.96  Aligned_cols=99  Identities=19%  Similarity=0.225  Sum_probs=80.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++ ++++++||.+    +......|+..|+..+++.++..+. ..+||.   ....+..++..|
T Consensus       101 ~~~~~~~~~~~l~~l~~~-~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~---~~~~~~~~~~~g  172 (238)
T 3ed5_A          101 GHQLIDGAFDLISNLQQQ-FDLYIVTNGV----SHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPM---KEYFNYVFERIP  172 (238)
T ss_dssp             CCCBCTTHHHHHHHHHTT-SEEEEEECSC----HHHHHHHHHHTTCGGGCSEEEEGGGTTSCTTC---HHHHHHHHHTST
T ss_pred             cCCCCccHHHHHHHHHhc-CeEEEEeCCC----HHHHHHHHHHcChHhhhheEEEecccCCCCCC---hHHHHHHHHHcC
Confidence            467999999999999999 9999999999    7778889999999888777776655 455653   344555677777


Q ss_pred             -Cc--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          221 -YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 -y~--i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                       ..  .+++|||+. +|+.++. +|.+++.+.+
T Consensus       173 ~~~~~~~i~vGD~~~~Di~~a~~aG~~~i~~~~  205 (238)
T 3ed5_A          173 QFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNP  205 (238)
T ss_dssp             TCCGGGEEEEESCTTTTHHHHHHTTCEEEEECT
T ss_pred             CCChhHeEEECCCcHHHHHHHHHCCCEEEEECC
Confidence             54  599999998 9999988 7888887744

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=99.48  E-value=1.1e-13  Score=118.47  Aligned_cols=101  Identities=16%  Similarity=0.102  Sum_probs=81.3

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcE-EEecCC-C-CCCCCcccHHHHHHHHH
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERL-IMRTAA-D-KGKNAVTYKSEIRKQLL  217 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~l-ilr~~~-~-~~kp~~~yK~~~r~~l~  217 (254)
                      ....++|++.++++.|+++|++++++||..    +..+...|+..|+..+++. ++..++ . .+||.+   ...+..++
T Consensus       107 ~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~i~~~~~~~~~~Kp~~---~~~~~~~~  179 (259)
T 4eek_A          107 TGVTAIEGAAETLRALRAAGVPFAIGSNSE----RGRLHLKLRVAGLTELAGEHIYDPSWVGGRGKPHP---DLYTFAAQ  179 (259)
T ss_dssp             TTCEECTTHHHHHHHHHHHTCCEEEECSSC----HHHHHHHHHHTTCHHHHCSCEECGGGGTTCCTTSS---HHHHHHHH
T ss_pred             ccCCcCccHHHHHHHHHHCCCeEEEEeCCC----HHHHHHHHHhcChHhhccceEEeHhhcCcCCCCCh---HHHHHHHH
Confidence            456889999999999999999999999999    7788889999999877665 666555 4 667644   33445566


Q ss_pred             HcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          218 EEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       218 ~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..|..  .+++|||+.+|+.++. +|.+++.+.+
T Consensus       180 ~lgi~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~  213 (259)
T 4eek_A          180 QLGILPERCVVIEDSVTGGAAGLAAGATLWGLLV  213 (259)
T ss_dssp             HTTCCGGGEEEEESSHHHHHHHHHHTCEEEEECC
T ss_pred             HcCCCHHHEEEEcCCHHHHHHHHHCCCEEEEEcc
Confidence            67764  5999999999999998 7998888853

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=99.48  E-value=2.5e-13  Score=114.66  Aligned_cols=99  Identities=14%  Similarity=0.090  Sum_probs=80.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++|++++++|+..    +..+...|+.+|+..+++.++..+. ..+||.+   ...+..++..|
T Consensus       108 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~g  180 (240)
T 3sd7_A          108 ENKIYENMKEILEMLYKNGKILLVATSKP----TVFAETILRYFDIDRYFKYIAGSNLDGTRVNKN---EVIQYVLDLCN  180 (240)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHTTCGGGCSEEEEECTTSCCCCHH---HHHHHHHHHHT
T ss_pred             ccccCccHHHHHHHHHHCCCeEEEEeCCc----HHHHHHHHHHcCcHhhEEEEEeccccCCCCCCH---HHHHHHHHHcC
Confidence            36799999999999999999999999998    7788889999999887777776654 4556533   34444566667


Q ss_pred             Cc---EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          221 YR---IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       221 y~---i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      ..   .+++|||+.+|+.++. +|.+++.+.
T Consensus       181 ~~~~~~~i~vGD~~~Di~~a~~aG~~~i~v~  211 (240)
T 3sd7_A          181 VKDKDKVIMVGDRKYDIIGAKKIGIDSIGVL  211 (240)
T ss_dssp             CCCGGGEEEEESSHHHHHHHHHHTCEEEEES
T ss_pred             CCCCCcEEEECCCHHHHHHHHHCCCCEEEEe
Confidence            55   6999999999999987 788888775

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=99.47  E-value=1.4e-12  Score=113.31  Aligned_cols=95  Identities=17%  Similarity=0.038  Sum_probs=74.9

Q ss_pred             CCCchHHHHHHHHHHHCCC--eEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-----CCCCCCcccHHHHHHH
Q 025360          143 CPAIPGVLVLFNKLIESGL--KVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-----DKGKNAVTYKSEIRKQ  215 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~--~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-----~~~kp~~~yK~~~r~~  215 (254)
                      ..++||+.++++.|+++|+  +++++||..    +......|+.+|+..+++.++..+.     ..+||.   ....+..
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~----~~~~~~~l~~~gl~~~fd~v~~~~~~~~~~~~~Kp~---~~~~~~~  213 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAY----KNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPH---VKAFEKA  213 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSC----HHHHHHHHHHHTCTTSCSEEECCCCSSCSSCCCTTS---HHHHHHH
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCC----hHHHHHHHHhCCcccccceEEEeccCCCcccCCCcC---HHHHHHH
Confidence            6789999999999999999  999999999    7778888999999888887776543     123443   3445555


Q ss_pred             HHHcCC---cEEEEEcCCcccccccc-cCCcEE
Q 025360          216 LLEEGY---RIWGNIGDQWSDLQGEC-TGNRTF  244 (254)
Q Consensus       216 l~~~Gy---~i~~~IGDq~sDi~ga~-~g~r~f  244 (254)
                      ++..|.   ..+++|||+.+|+.++. +|.+++
T Consensus       214 ~~~lgi~~~~~~i~vGD~~~Di~~a~~aG~~~~  246 (282)
T 3nuq_A          214 MKESGLARYENAYFIDDSGKNIETGIKLGMKTC  246 (282)
T ss_dssp             HHHHTCCCGGGEEEEESCHHHHHHHHHHTCSEE
T ss_pred             HHHcCCCCcccEEEEcCCHHHHHHHHHCCCeEE
Confidence            666675   45999999999999998 787443

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=99.47  E-value=3.3e-13  Score=115.54  Aligned_cols=101  Identities=22%  Similarity=0.177  Sum_probs=79.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC-CcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY-ERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~-~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++||+.++++.|+++|++++++||.+    +......|+.+|+..+ ++.+...+. ..+||.+   ...+..++..
T Consensus       109 ~~~~~~~~~~~l~~l~~~g~~~~i~tn~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~---~~~~~~~~~l  181 (277)
T 3iru_A          109 RSQLIPGWKEVFDKLIAQGIKVGGNTGYG----PGMMAPALIAAKEQGYTPASTVFATDVVRGRPFP---DMALKVALEL  181 (277)
T ss_dssp             TCCBCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHHHHTTCCCSEEECGGGSSSCTTSS---HHHHHHHHHH
T ss_pred             cCccCcCHHHHHHHHHHcCCeEEEEeCCc----hHHHHHHHHhcCcccCCCceEecHHhcCCCCCCH---HHHHHHHHHc
Confidence            46899999999999999999999999999    6677778888787666 677777655 4556544   3344456666


Q ss_pred             CCc---EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          220 GYR---IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy~---i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      |..   .+++|||+.+|+.++. +|.+++.+...
T Consensus       182 gi~~~~~~i~vGD~~~Di~~a~~aG~~~v~v~~g  215 (277)
T 3iru_A          182 EVGHVNGCIKVDDTLPGIEEGLRAGMWTVGVSCS  215 (277)
T ss_dssp             TCSCGGGEEEEESSHHHHHHHHHTTCEEEEECSS
T ss_pred             CCCCCccEEEEcCCHHHHHHHHHCCCeEEEEecC
Confidence            654   4999999999999998 89998888654

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=99.47  E-value=8.3e-14  Score=115.22  Aligned_cols=98  Identities=11%  Similarity=0.061  Sum_probs=76.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh------CCCCCCCcEEEecCC-CCCCCCcccHHHHHHH
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN------QGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQ  215 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~------~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~  215 (254)
                      ..++|++.++++.|++ |++++++||.+    +..+...++.      .|+..+++.++..++ ..+||.+   ...+..
T Consensus        88 ~~~~~~~~~~l~~l~~-g~~~~i~t~~~----~~~~~~~~~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~  159 (211)
T 2i6x_A           88 EEISAEKFDYIDSLRP-DYRLFLLSNTN----PYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNE---DIFLEM  159 (211)
T ss_dssp             EEECHHHHHHHHHHTT-TSEEEEEECCC----HHHHHHHTSTTSSTTCCCGGGGSSEEEEHHHHTCCTTSH---HHHHHH
T ss_pred             cccChHHHHHHHHHHc-CCeEEEEeCCC----HHHHHHHHhhhccccccCHHHHcCeEEeecccCCCCCCH---HHHHHH
Confidence            3678999999999999 99999999999    6677778887      798877776666544 4566643   334445


Q ss_pred             HHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          216 LLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       216 l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ++..|..  .+++|||+.+|+.++. +|.+++.+..
T Consensus       160 ~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~~~~~~  195 (211)
T 2i6x_A          160 IADSGMKPEETLFIDDGPANVATAERLGFHTYCPDN  195 (211)
T ss_dssp             HHHHCCCGGGEEEECSCHHHHHHHHHTTCEEECCCT
T ss_pred             HHHhCCChHHeEEeCCCHHHHHHHHHcCCEEEEECC
Confidence            6666654  5999999999999987 7888877654

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=99.47  E-value=1e-13  Score=116.80  Aligned_cols=99  Identities=15%  Similarity=0.003  Sum_probs=75.3

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH---HHH---HhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHH
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR---DNL---HNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQ  215 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~---~~L---~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~  215 (254)
                      ..+.||+.++++.|+++ ++++++||.+    +....   +.|   +..|+..+++.++...+ ..+||.+   ...+..
T Consensus       111 ~~~~~~~~~~l~~l~~~-~~~~i~Sn~~----~~~~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~~---~~~~~~  182 (229)
T 4dcc_A          111 VDIPTYKLDLLLKLREK-YVVYLLSNTN----DIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEP---EIFKAV  182 (229)
T ss_dssp             CCCCHHHHHHHHHHTTT-SEEEEEECCC----HHHHHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTCH---HHHHHH
T ss_pred             HhccHHHHHHHHHHHhc-CcEEEEECCC----hHHHHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCCH---HHHHHH
Confidence            35779999999999999 9999999999    44444   556   77888776666666554 5567654   334445


Q ss_pred             HHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          216 LLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       216 l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ++..|..  .+++|||+.+|+.++. +|.+++.+.++
T Consensus       183 ~~~~g~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~~  219 (229)
T 4dcc_A          183 TEDAGIDPKETFFIDDSEINCKVAQELGISTYTPKAG  219 (229)
T ss_dssp             HHHHTCCGGGEEEECSCHHHHHHHHHTTCEEECCCTT
T ss_pred             HHHcCCCHHHeEEECCCHHHHHHHHHcCCEEEEECCH
Confidence            6666654  5999999999999998 88898887664

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=99.46  E-value=1.7e-14  Score=122.49  Aligned_cols=141  Identities=18%  Similarity=0.144  Sum_probs=87.6

Q ss_pred             CCCceEEEecCCccccchhhhh--hhccCC--CC--CChHHHHHHHHh--CCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360           99 DGMDAWILDVDDTCISNVYYYK--GKRYGC--DP--YDPAGFRAWALK--GGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~--~~~~g~--~~--~~~~~~~~~~~~--~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      ..+++|+||+||||+++.+.+.  ...+..  ..  .+.+.|.++...  ....+.|++.++++.|+++|++++++||++
T Consensus        35 ~~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~  114 (211)
T 2b82_A           35 RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRS  114 (211)
T ss_dssp             CCCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSC
T ss_pred             CCCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            3478999999999999876442  111110  01  123445544321  123457899999999999999999999998


Q ss_pred             ccccHHHHHHHHHh-CCCCCC--CcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEEEe
Q 025360          171 EETFGQVTRDNLHN-QGFVGY--ERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       171 ~e~~r~~T~~~L~~-~G~~~~--~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                       ........+.|.. ++....  .....    ..+||++....   ..+++.|.  +++|||+.+|+.+|+ +|.+++.+
T Consensus       115 -~~~~~~~l~~l~~~f~~i~~~~~~~~~----~~~KP~p~~~~---~~~~~~g~--~l~VGDs~~Di~aA~~aG~~~i~v  184 (211)
T 2b82_A          115 -PTKTETVSKTLADNFHIPATNMNPVIF----AGDKPGQNTKS---QWLQDKNI--RIFYGDSDNDITAARDVGARGIRI  184 (211)
T ss_dssp             -CCSSCCHHHHHHHHTTCCTTTBCCCEE----CCCCTTCCCSH---HHHHHTTE--EEEEESSHHHHHHHHHTTCEEEEC
T ss_pred             -HHHHHHHHHHHHHhcCccccccchhhh----cCCCCCHHHHH---HHHHHCCC--EEEEECCHHHHHHHHHCCCeEEEE
Confidence             5433333333432 222100  00011    22466553222   24566665  999999999999998 79999988


Q ss_pred             CCC
Q 025360          247 PNP  249 (254)
Q Consensus       247 PNp  249 (254)
                      ...
T Consensus       185 ~~g  187 (211)
T 2b82_A          185 LRA  187 (211)
T ss_dssp             CCC
T ss_pred             ecC
Confidence            653

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=99.46  E-value=2.6e-14  Score=117.68  Aligned_cols=100  Identities=16%  Similarity=0.186  Sum_probs=71.7

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..++|++.++++.|+++|++++++||.+ ...   ....+.. .|+..+++.++.+.+ ..+||.+   ...+..++..|
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~---~~~~~~~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  162 (206)
T 2b0c_A           90 VALRPEVIAIMHKLREQGHRVVVLSNTN-RLH---TTFWPEEYPEIRDAADHIYLSQDLGMRKPEA---RIYQHVLQAEG  162 (206)
T ss_dssp             EEECHHHHHHHHHHHHTTCEEEEEECCC-CCT---TSCCGGGCHHHHHHCSEEEEHHHHTCCTTCH---HHHHHHHHHHT
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEECCC-hHH---HHHHHHhccChhhheeeEEEecccCCCCCCH---HHHHHHHHHcC
Confidence            5688999999999999999999999988 332   2233444 466555555666544 4556643   33444556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.++. +|.+++.+..+
T Consensus       163 ~~~~~~~~vgD~~~Di~~a~~aG~~~~~~~~~  194 (206)
T 2b0c_A          163 FSPSDTVFFDDNADNIEGANQLGITSILVKDK  194 (206)
T ss_dssp             CCGGGEEEEESCHHHHHHHHTTTCEEEECCST
T ss_pred             CCHHHeEEeCCCHHHHHHHHHcCCeEEEecCC
Confidence            54  5999999999999987 78888887654

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=99.46  E-value=2.5e-13  Score=112.56  Aligned_cols=97  Identities=14%  Similarity=-0.041  Sum_probs=72.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC-----------CCCCCCCcccHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA-----------ADKGKNAVTYKS  210 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~-----------~~~~kp~~~yK~  210 (254)
                      ..++.|++.++++.|+++|++++++||..    +..+...|+.+|+..++..++...           ...+||.   ..
T Consensus        73 ~~~~~~~~~~~l~~l~~~g~~~~i~S~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k---~~  145 (217)
T 3m1y_A           73 SLPLFEGALELVSALKEKNYKVVCFSGGF----DLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSK---GE  145 (217)
T ss_dssp             TCCBCBTHHHHHHHHHTTTEEEEEEEEEE----HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHH---HH
T ss_pred             cCcCCCCHHHHHHHHHHCCCEEEEEcCCc----hhHHHHHHHHcCcchhccceeEEeCCEEEeeeccCCCCCCCh---HH
Confidence            36799999999999999999999999998    778888999999987665554221           1223332   24


Q ss_pred             HHHHHHHHcCC--cEEEEEcCCcccccccc-cCCcEEE
Q 025360          211 EIRKQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFK  245 (254)
Q Consensus       211 ~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fk  245 (254)
                      ..+..++..|.  ..+++|||+.+|+.++. +|..+..
T Consensus       146 ~~~~~~~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~~~  183 (217)
T 3m1y_A          146 MLLVLQRLLNISKTNTLVVGDGANDLSMFKHAHIKIAF  183 (217)
T ss_dssp             HHHHHHHHHTCCSTTEEEEECSGGGHHHHTTCSEEEEE
T ss_pred             HHHHHHHHcCCCHhHEEEEeCCHHHHHHHHHCCCeEEE
Confidence            44455566666  45999999999999988 6655544

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.46  E-value=6.7e-13  Score=110.88  Aligned_cols=98  Identities=14%  Similarity=0.166  Sum_probs=78.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+ +|++++++||.+    +......|+..|+..+++.++..+. ..+||.   ....+..++..|
T Consensus       105 ~~~~~~~~~~~l~~l~-~g~~~~i~sn~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~---~~~~~~~~~~lg  176 (240)
T 3qnm_A          105 KSGLMPHAKEVLEYLA-PQYNLYILSNGF----RELQSRKMRSAGVDRYFKKIILSEDLGVLKPR---PEIFHFALSATQ  176 (240)
T ss_dssp             CCCBSTTHHHHHHHHT-TTSEEEEEECSC----HHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTS---HHHHHHHHHHTT
T ss_pred             cCCcCccHHHHHHHHH-cCCeEEEEeCCc----hHHHHHHHHHcChHhhceeEEEeccCCCCCCC---HHHHHHHHHHcC
Confidence            4678999999999999 999999999998    7777888999999887777776654 445553   344555677777


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklP  247 (254)
                      ..  .+++|||+. +|+.++. +|.+++.+.
T Consensus       177 i~~~~~~~iGD~~~~Di~~a~~aG~~~~~~~  207 (240)
T 3qnm_A          177 SELRESLMIGDSWEADITGAHGVGMHQAFYN  207 (240)
T ss_dssp             CCGGGEEEEESCTTTTHHHHHHTTCEEEEEC
T ss_pred             CCcccEEEECCCchHhHHHHHHcCCeEEEEc
Confidence            64  599999996 9999998 788888774

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=5e-13  Score=110.85  Aligned_cols=97  Identities=22%  Similarity=0.250  Sum_probs=77.8

Q ss_pred             CCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++| ++++++|+.+    +......|+.+|+..+++.++...    ||.   ....+..++..|
T Consensus       103 ~~~~~~~~~~~l~~l~~~g~~~~~i~t~~~----~~~~~~~l~~~~~~~~f~~~~~~~----kpk---~~~~~~~~~~lg  171 (234)
T 3ddh_A          103 PIELLPGVKETLKTLKETGKYKLVVATKGD----LLDQENKLERSGLSPYFDHIEVMS----DKT---EKEYLRLLSILQ  171 (234)
T ss_dssp             CCCBCTTHHHHHHHHHHHCCCEEEEEEESC----HHHHHHHHHHHTCGGGCSEEEEES----CCS---HHHHHHHHHHHT
T ss_pred             cCCcCccHHHHHHHHHhCCCeEEEEEeCCc----hHHHHHHHHHhCcHhhhheeeecC----CCC---HHHHHHHHHHhC
Confidence            4688999999999999999 9999999988    677788899999987777666542    221   344555666677


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+. +|+.++. +|.+++.+++.
T Consensus       172 i~~~~~i~iGD~~~~Di~~a~~aG~~~v~v~~~  204 (234)
T 3ddh_A          172 IAPSELLMVGNSFKSDIQPVLSLGGYGVHIPFE  204 (234)
T ss_dssp             CCGGGEEEEESCCCCCCHHHHHHTCEEEECCCC
T ss_pred             CCcceEEEECCCcHHHhHHHHHCCCeEEEecCC
Confidence            64  599999997 9999988 79999998664

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=99.45  E-value=1.9e-13  Score=114.26  Aligned_cols=102  Identities=19%  Similarity=0.166  Sum_probs=78.4

Q ss_pred             CCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcC-
Q 025360          143 CPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEG-  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~G-  220 (254)
                      ..+.||+.++++.|+++ |++++++||..    +..+...|+.+|+..+++.+..+.+...++ .......+..++..| 
T Consensus        92 ~~~~~~~~~~l~~l~~~~g~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~~-k~~~~~~~~~~~~lg~  166 (234)
T 2hcf_A           92 ITLLEGVRELLDALSSRSDVLLGLLTGNF----EASGRHKLKLPGIDHYFPFGAFADDALDRN-ELPHIALERARRMTGA  166 (234)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSC----HHHHHHHHHTTTCSTTCSCEECTTTCSSGG-GHHHHHHHHHHHHHCC
T ss_pred             CCcCCCHHHHHHHHHhCCCceEEEEcCCc----HHHHHHHHHHCCchhhcCcceecCCCcCcc-chHHHHHHHHHHHhCC
Confidence            46789999999999999 99999999999    777888999999988877655554422211 123344455566667 


Q ss_pred             -C--cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 -Y--RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 -y--~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                       .  ..+++|||+.+|+.++. +|.+++.+.+.
T Consensus       167 ~~~~~~~i~iGD~~~Di~~a~~aG~~~i~v~~~  199 (234)
T 2hcf_A          167 NYSPSQIVIIGDTEHDIRCARELDARSIAVATG  199 (234)
T ss_dssp             CCCGGGEEEEESSHHHHHHHHTTTCEEEEECCS
T ss_pred             CCCcccEEEECCCHHHHHHHHHCCCcEEEEcCC
Confidence             4  35999999999999987 79998888764

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=99.44  E-value=1.6e-13  Score=113.54  Aligned_cols=139  Identities=18%  Similarity=0.116  Sum_probs=99.0

Q ss_pred             CceEEEecCCccccchhhhhhh------ccCCC---------------------CCCh----HHHHHHHHh-----CCCC
Q 025360          101 MDAWILDVDDTCISNVYYYKGK------RYGCD---------------------PYDP----AGFRAWALK-----GGCP  144 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~------~~g~~---------------------~~~~----~~~~~~~~~-----~~~~  144 (254)
                      .++|+||+||||+++.+.+...      .+|..                     ..+.    ..+.+|...     ...+
T Consensus         4 ~k~iifDlDGTL~d~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (209)
T 2hdo_A            4 YQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMTELGIAASEFDHFQAQYEDVMASHYDQIE   83 (209)
T ss_dssp             CSEEEECSBTTTEECHHHHHHHHHHHHHTTTCCCCHHHHHHHTTSCHHHHHHHTTCCGGGHHHHHHHHHHHHTTCGGGCE
T ss_pred             ccEEEEcCCCCCcCCHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCcHHHHHHHcCCCHHHHHHHHHHHHHHHhhhcccCC
Confidence            4799999999999987543221      12210                     0111    112333332     3457


Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc-
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR-  222 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~-  222 (254)
                      ++|++.++++.|+++ ++++++||.+    +..+...|+.+|+..+++.++..++ ...||.+   ...+..++..|.. 
T Consensus        84 ~~~~~~~~l~~l~~~-~~~~i~s~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~KP~~---~~~~~~~~~~~~~~  155 (209)
T 2hdo_A           84 LYPGITSLFEQLPSE-LRLGIVTSQR----RNELESGMRSYPFMMRMAVTISADDTPKRKPDP---LPLLTALEKVNVAP  155 (209)
T ss_dssp             ECTTHHHHHHHSCTT-SEEEEECSSC----HHHHHHHHTTSGGGGGEEEEECGGGSSCCTTSS---HHHHHHHHHTTCCG
T ss_pred             cCCCHHHHHHHHHhc-CcEEEEeCCC----HHHHHHHHHHcChHhhccEEEecCcCCCCCCCc---HHHHHHHHHcCCCc
Confidence            899999999999999 9999999999    7788889999999877777776654 4566644   3344456666654 


Q ss_pred             -EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          223 -IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       223 -i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                       .+++|||+.+|+.++. +|..++.+.
T Consensus       156 ~~~i~vGD~~~Di~~a~~aG~~~~~~~  182 (209)
T 2hdo_A          156 QNALFIGDSVSDEQTAQAANVDFGLAV  182 (209)
T ss_dssp             GGEEEEESSHHHHHHHHHHTCEEEEEG
T ss_pred             ccEEEECCChhhHHHHHHcCCeEEEEc
Confidence             5999999999999987 788888764

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=99.44  E-value=4.8e-13  Score=111.58  Aligned_cols=98  Identities=14%  Similarity=0.095  Sum_probs=74.3

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCc-ccHHHHHHHHHHcC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAV-TYKSEIRKQLLEEG  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~-~yK~~~r~~l~~~G  220 (254)
                      ..++|++.++++.|++ |++++++||.+    +......|+.++  .+++.++.+.+ ..+||.+ .|...++. ++..|
T Consensus        98 ~~~~~~~~~~l~~l~~-~~~~~i~tn~~----~~~~~~~l~~l~--~~fd~i~~~~~~~~~KP~~~~~~~~l~~-~~~lg  169 (240)
T 3smv_A           98 WPAFPDTVEALQYLKK-HYKLVILSNID----RNEFKLSNAKLG--VEFDHIITAQDVGSYKPNPNNFTYMIDA-LAKAG  169 (240)
T ss_dssp             CCBCTTHHHHHHHHHH-HSEEEEEESSC----HHHHHHHHTTTC--SCCSEEEEHHHHTSCTTSHHHHHHHHHH-HHHTT
T ss_pred             CCCCCcHHHHHHHHHh-CCeEEEEeCCC----hhHHHHHHHhcC--CccCEEEEccccCCCCCCHHHHHHHHHH-HHhcC
Confidence            4789999999999999 89999999999    666666676644  45666666554 5667765 33333333 77777


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+. +|+.++. +|.+++.+..
T Consensus       170 i~~~~~~~vGD~~~~Di~~a~~aG~~~~~~~~  201 (240)
T 3smv_A          170 IEKKDILHTAESLYHDHIPANDAGLVSAWIYR  201 (240)
T ss_dssp             CCGGGEEEEESCTTTTHHHHHHHTCEEEEECT
T ss_pred             CCchhEEEECCCchhhhHHHHHcCCeEEEEcC
Confidence            65  499999997 9999998 7999888754

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=99.43  E-value=4.6e-13  Score=113.05  Aligned_cols=126  Identities=16%  Similarity=0.150  Sum_probs=90.1

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc----
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF----  174 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~----  174 (254)
                      ...++++||+||||++...|...                  .....++||+.++|+.|+++|++++++||++ ...    
T Consensus        29 ~~~k~i~~D~DGtl~~~~~y~~~------------------~~~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~-~~~~~~~   89 (218)
T 2o2x_A           29 PHLPALFLDRDGTINVDTDYPSD------------------PAEIVLRPQMLPAIATANRAGIPVVVVTNQS-GIARGYF   89 (218)
T ss_dssp             SSCCCEEECSBTTTBCCCSCTTC------------------GGGCCBCGGGHHHHHHHHHHTCCEEEEEECH-HHHTTSC
T ss_pred             hcCCEEEEeCCCCcCCCCcccCC------------------cccCeECcCHHHHHHHHHHCCCEEEEEcCcC-CCCcccc
Confidence            34689999999999986432210                  1236789999999999999999999999998 210    


Q ss_pred             --------HHHHHHHHHhCCCCCCCcEEEec-----------CC-CCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcc
Q 025360          175 --------GQVTRDNLHNQGFVGYERLIMRT-----------AA-DKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWS  232 (254)
Q Consensus       175 --------r~~T~~~L~~~G~~~~~~lilr~-----------~~-~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~s  232 (254)
                              .......|+++|+. ++..+...           +. ..+||.+   ...+..++..|.  ..+++|||+.+
T Consensus        90 ~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~~~~g~~~~~~~~~~~~KP~~---~~~~~~~~~~~i~~~~~~~VGD~~~  165 (218)
T 2o2x_A           90 GWSAFAAVNGRVLELLREEGVF-VDMVLACAYHEAGVGPLAIPDHPMRKPNP---GMLVEAGKRLALDLQRSLIVGDKLA  165 (218)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCC-CSEEEEECCCTTCCSTTCCSSCTTSTTSC---HHHHHHHHHHTCCGGGCEEEESSHH
T ss_pred             cHHHHHHHHHHHHHHHHHcCCc-eeeEEEeecCCCCceeecccCCccCCCCH---HHHHHHHHHcCCCHHHEEEEeCCHH
Confidence                    05777889999986 55544443           22 3456544   233334555565  35899999999


Q ss_pred             cccccc-cCCcE-EEeC
Q 025360          233 DLQGEC-TGNRT-FKLP  247 (254)
Q Consensus       233 Di~ga~-~g~r~-fklP  247 (254)
                      |+.++. +|.++ +.+.
T Consensus       166 Di~~a~~aG~~~~i~v~  182 (218)
T 2o2x_A          166 DMQAGKRAGLAQGWLVD  182 (218)
T ss_dssp             HHHHHHHTTCSEEEEET
T ss_pred             HHHHHHHCCCCEeEEEe
Confidence            999998 78888 7664

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=99.43  E-value=1e-12  Score=110.46  Aligned_cols=102  Identities=15%  Similarity=0.063  Sum_probs=69.8

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEe-cCC-CCCCC--Cccc---H-HHHHHH
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMR-TAA-DKGKN--AVTY---K-SEIRKQ  215 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr-~~~-~~~kp--~~~y---K-~~~r~~  215 (254)
                      .++||+.++++.|+++|++++++||..    +..+...++.+|++.+....+. .++ ..+++  ...+   | ..++..
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~----~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~  167 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATN----SFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQW  167 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHHHHHHHHH
Confidence            569999999999999999999999999    7888899999999753221111 111 11111  1122   2 223344


Q ss_pred             HHHcC-----CcEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          216 LLEEG-----YRIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       216 l~~~G-----y~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      +...|     ...|++|||+.+|+..+. +|..+...|++
T Consensus       168 ~~~~~~~~~~~~~~~~vGDs~~D~~~~~~ag~~~~~~~~~  207 (232)
T 3fvv_A          168 LAGMGLALGDFAESYFYSDSVNDVPLLEAVTRPIAANPSP  207 (232)
T ss_dssp             HHHTTCCGGGSSEEEEEECCGGGHHHHHHSSEEEEESCCH
T ss_pred             HHHcCCCcCchhheEEEeCCHhhHHHHHhCCCeEEECcCH
Confidence            45566     457999999999999988 66666555553

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=99.42  E-value=5.4e-13  Score=115.25  Aligned_cols=99  Identities=17%  Similarity=0.259  Sum_probs=77.8

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.++++.|+++|++++++||.+ ..    ....|+.+|+..+++.++.+.+ ..+||.+   ...+..++..|.
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~-~~----~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~g~  176 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFD-RR----LEGILGGLGLREHFDFVLTSEAAGWPKPDP---RIFQEALRLAHM  176 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCC-TT----HHHHHHHTTCGGGCSCEEEHHHHSSCTTSH---HHHHHHHHHHTC
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCc-HH----HHHHHHhCCcHHhhhEEEeecccCCCCCCH---HHHHHHHHHcCC
Confidence            3689999999999999999999999987 32    4678999999887776666654 5566644   334445666666


Q ss_pred             c--EEEEEcCCc-ccccccc-cCCcEEEeCCC
Q 025360          222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp  249 (254)
                      .  .+++|||+. +|+.++. +|.+++.+...
T Consensus       177 ~~~~~~~vGD~~~~Di~~a~~aG~~~i~~~~~  208 (263)
T 3k1z_A          177 EPVVAAHVGDNYLCDYQGPRAVGMHSFLVVGP  208 (263)
T ss_dssp             CGGGEEEEESCHHHHTHHHHTTTCEEEEECCS
T ss_pred             CHHHEEEECCCcHHHHHHHHHCCCEEEEEcCC
Confidence            4  599999997 9999998 89999888654

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=99.42  E-value=2.4e-12  Score=106.29  Aligned_cols=101  Identities=16%  Similarity=0.098  Sum_probs=78.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...+.|++.++++.|++.|++++++|+..    +......|+.+|+..+++.++..+. ...||.+   ..++..++..|
T Consensus        92 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~kp~~---~~~~~~~~~~~  164 (226)
T 1te2_A           92 TRPLLPGVREAVALCKEQGLLVGLASASP----LHMLEKVLTMFDLRDSFDALASAEKLPYSKPHP---QVYLDCAAKLG  164 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEECTTSSCCTTST---HHHHHHHHHHT
T ss_pred             cCCcCccHHHHHHHHHHCCCcEEEEeCCc----HHHHHHHHHhcCcHhhCcEEEeccccCCCCCCh---HHHHHHHHHcC
Confidence            35788999999999999999999999998    6677788899999877766666554 4455433   44445556666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.++. +|..++.+.+.
T Consensus       165 i~~~~~i~iGD~~nDi~~a~~aG~~~~~~~~~  196 (226)
T 1te2_A          165 VDPLTCVALEDSVNGMIASKAARMRSIVVPAP  196 (226)
T ss_dssp             SCGGGEEEEESSHHHHHHHHHTTCEEEECCCT
T ss_pred             CCHHHeEEEeCCHHHHHHHHHcCCEEEEEcCC
Confidence            54  5999999999999987 78888876544

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=99.42  E-value=1.1e-12  Score=108.43  Aligned_cols=97  Identities=13%  Similarity=0.140  Sum_probs=71.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCCCC--C--CCCcccHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAADK--G--KNAVTYKSEIRKQL  216 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~~~--~--kp~~~yK~~~r~~l  216 (254)
                      ..+++||+.++++.|+++ ++++++||.+    +..+...|+++|+..++ ..+....+..  +  +|.+..+....+.+
T Consensus        67 ~~~~~~g~~~~l~~l~~~-~~~~i~s~~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~p~p~~~~~~l~~l  141 (206)
T 1rku_A           67 TLKPLEGAVEFVDWLRER-FQVVILSDTF----YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAF  141 (206)
T ss_dssp             TCCCCTTHHHHHHHHHTT-SEEEEEEEEE----HHHHHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHHHHH
T ss_pred             hcCCCccHHHHHHHHHhc-CcEEEEECCh----HHHHHHHHHHcCCcceecceeEEcCCceEEeeecCCCchHHHHHHHH
Confidence            568899999999999999 9999999998    77888999999998766 3344332221  1  24444444444444


Q ss_pred             HHcCCcEEEEEcCCcccccccc-cCCcEE
Q 025360          217 LEEGYRIWGNIGDQWSDLQGEC-TGNRTF  244 (254)
Q Consensus       217 ~~~Gy~i~~~IGDq~sDi~ga~-~g~r~f  244 (254)
                      ... ...+++|||+.+|+.++. +|..+.
T Consensus       142 ~~~-~~~~~~iGD~~~Di~~a~~aG~~~~  169 (206)
T 1rku_A          142 KSL-YYRVIAAGDSYNDTTMLSEAHAGIL  169 (206)
T ss_dssp             HHT-TCEEEEEECSSTTHHHHHHSSEEEE
T ss_pred             Hhc-CCEEEEEeCChhhHHHHHhcCccEE
Confidence            332 357999999999999987 676654

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=99.41  E-value=9.9e-13  Score=114.53  Aligned_cols=100  Identities=13%  Similarity=0.031  Sum_probs=78.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh---CCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN---QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLE  218 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~---~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~  218 (254)
                      ..+++||+.++++.|+++|++++++||.+    +......|+.   .|+..|++.++..+.. +||++   ...+..++.
T Consensus       128 ~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~----~~~~~~~l~~~~~~~l~~~fd~i~~~~~~-~KP~p---~~~~~~~~~  199 (261)
T 1yns_A          128 KAEFFADVVPAVRKWREAGMKVYIYSSGS----VEAQKLLFGHSTEGDILELVDGHFDTKIG-HKVES---ESYRKIADS  199 (261)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHTBTTBCCGGGCSEEECGGGC-CTTCH---HHHHHHHHH
T ss_pred             ccccCcCHHHHHHHHHhCCCeEEEEeCCC----HHHHHHHHHhhcccChHhhccEEEecCCC-CCCCH---HHHHHHHHH
Confidence            45789999999999999999999999999    6666667774   4688888877776324 77765   333345556


Q ss_pred             cCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          219 EGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       219 ~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .|..  .|++|||+.+|+.+|+ +|.+++.++.+
T Consensus       200 lg~~p~~~l~VgDs~~di~aA~~aG~~~i~v~~~  233 (261)
T 1yns_A          200 IGCSTNNILFLTDVTREASAAEEADVHVAVVVRP  233 (261)
T ss_dssp             HTSCGGGEEEEESCHHHHHHHHHTTCEEEEECCT
T ss_pred             hCcCcccEEEEcCCHHHHHHHHHCCCEEEEEeCC
Confidence            6654  5999999999999998 89999988653

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.41  E-value=1.2e-12  Score=108.10  Aligned_cols=101  Identities=13%  Similarity=0.051  Sum_probs=78.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...+.|++.++++.|++.|++++++|+..    +......|+.+|+..+++.++..+. ..+||.+   ......++..|
T Consensus        87 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---~~~~~~~~~~~  159 (225)
T 3d6j_A           87 NTILFPDTLPTLTHLKKQGIRIGIISTKY----RFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDP---EGLLLAIDRLK  159 (225)
T ss_dssp             GCEECTTHHHHHHHHHHHTCEEEEECSSC----HHHHHHHHHTSSCTTCCSEEECGGGCSSCTTST---HHHHHHHHHTT
T ss_pred             cCccCcCHHHHHHHHHHCCCeEEEEECCC----HHHHHHHHHHcCchhheeeeeehhhcCCCCCCh---HHHHHHHHHhC
Confidence            35678999999999999999999999998    6777788899999877776666544 3445432   33445566667


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.++. +|..++.+.+.
T Consensus       160 ~~~~~~i~iGD~~nDi~~~~~aG~~~~~~~~~  191 (225)
T 3d6j_A          160 ACPEEVLYIGDSTVDAGTAAAAGVSFTGVTSG  191 (225)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEETTS
T ss_pred             CChHHeEEEcCCHHHHHHHHHCCCeEEEECCC
Confidence            54  5899999999999987 78888887654

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=99.40  E-value=3.2e-12  Score=108.86  Aligned_cols=95  Identities=18%  Similarity=0.174  Sum_probs=74.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ...++|++.++++.|+ +|++++++||..    +..+...|+..|+..+++.++..    +||.   ....+..++..|.
T Consensus       110 ~~~~~~~~~~~l~~l~-~~~~~~i~t~~~----~~~~~~~l~~~~l~~~f~~i~~~----~kp~---~~~~~~~~~~l~~  177 (251)
T 2pke_A          110 PVEVIAGVREAVAAIA-ADYAVVLITKGD----LFHQEQKIEQSGLSDLFPRIEVV----SEKD---PQTYARVLSEFDL  177 (251)
T ss_dssp             CCCBCTTHHHHHHHHH-TTSEEEEEEESC----HHHHHHHHHHHSGGGTCCCEEEE----SCCS---HHHHHHHHHHHTC
T ss_pred             cCCcCccHHHHHHHHH-CCCEEEEEeCCC----HHHHHHHHHHcCcHHhCceeeee----CCCC---HHHHHHHHHHhCc
Confidence            4678999999999999 999999999998    67778889999998776655553    2332   3444555666665


Q ss_pred             c--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      .  .+++|||+. +|+.+++ +|..++.+++
T Consensus       178 ~~~~~i~iGD~~~~Di~~a~~aG~~~~~v~~  208 (251)
T 2pke_A          178 PAERFVMIGNSLRSDVEPVLAIGGWGIYTPY  208 (251)
T ss_dssp             CGGGEEEEESCCCCCCHHHHHTTCEEEECCC
T ss_pred             CchhEEEECCCchhhHHHHHHCCCEEEEECC
Confidence            4  599999999 9999998 7888888854

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.39  E-value=1.5e-12  Score=105.80  Aligned_cols=100  Identities=17%  Similarity=0.138  Sum_probs=76.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...+.|++.++++.|+++|++++++|+..    +.... .++.+|+..+++.++..+. ...||.+   ...+..++..|
T Consensus        83 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~-~~~~~~~~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~~~  154 (207)
T 2go7_A           83 QVVLMPGAREVLAWADESGIQQFIYTHKG----NNAFT-ILKDLGVESYFTEILTSQSGFVRKPSP---EAATYLLDKYQ  154 (207)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEECSSC----THHHH-HHHHHTCGGGEEEEECGGGCCCCTTSS---HHHHHHHHHHT
T ss_pred             cceeCcCHHHHHHHHHHCCCeEEEEeCCc----hHHHH-HHHHcCchhheeeEEecCcCCCCCCCc---HHHHHHHHHhC
Confidence            34678999999999999999999999998    55556 7788898877776666554 4456543   33334455556


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.++. +|..++.+.|.
T Consensus       155 i~~~~~~~iGD~~nDi~~~~~aG~~~i~~~~~  186 (207)
T 2go7_A          155 LNSDNTYYIGDRTLDVEFAQNSGIQSINFLES  186 (207)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEESSCC
T ss_pred             CCcccEEEECCCHHHHHHHHHCCCeEEEEecC
Confidence            54  5999999999999987 78888888764

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=99.39  E-value=2e-12  Score=107.89  Aligned_cols=99  Identities=18%  Similarity=0.112  Sum_probs=78.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.++++.|+++ ++++++||.+    +..+...|+.+|+..+++.++..+. ..+||.+   ...+..++..|
T Consensus        98 ~~~~~~~~~~~l~~l~~~-~~~~i~t~~~----~~~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~~  169 (234)
T 3u26_A           98 YGELYPEVVEVLKSLKGK-YHVGMITDSD----TEQAMAFLDALGIKDLFDSITTSEEAGFFKPHP---RIFELALKKAG  169 (234)
T ss_dssp             HCCBCTTHHHHHHHHTTT-SEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEEHHHHTBCTTSH---HHHHHHHHHHT
T ss_pred             hCCcCcCHHHHHHHHHhC-CcEEEEECCC----HHHHHHHHHHcCcHHHcceeEeccccCCCCcCH---HHHHHHHHHcC
Confidence            457899999999999999 9999999999    7778889999999887777776654 4456543   33444566666


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      ..  .+++|||+. +|+.++. +|.+++.+..
T Consensus       170 ~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~  201 (234)
T 3u26_A          170 VKGEEAVYVGDNPVKDCGGSKNLGMTSILLDR  201 (234)
T ss_dssp             CCGGGEEEEESCTTTTHHHHHTTTCEEEEECS
T ss_pred             CCchhEEEEcCCcHHHHHHHHHcCCEEEEECC
Confidence            54  599999998 9999988 7888888743

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=99.39  E-value=5.7e-12  Score=104.84  Aligned_cols=102  Identities=20%  Similarity=0.121  Sum_probs=78.7

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR  222 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~  222 (254)
                      .+.|++.++++.|+++|++++++||.. -..+..+...|+..|+..+++.++..++ ...||.+   ...+..++..|..
T Consensus        99 ~~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~lgi~  174 (235)
T 2om6_A           99 LVLEGTKEALQFVKERGLKTAVIGNVM-FWPGSYTRLLLERFGLMEFIDKTFFADEVLSYKPRK---EMFEKVLNSFEVK  174 (235)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEEEECCC-SSCHHHHHHHHHHTTCGGGCSEEEEHHHHTCCTTCH---HHHHHHHHHTTCC
T ss_pred             CcCccHHHHHHHHHHCCCEEEEEcCCc-ccchhHHHHHHHhCCcHHHhhhheeccccCCCCCCH---HHHHHHHHHcCCC
Confidence            469999999999999999999999976 3334566788899999887777766554 4556543   4445566777764


Q ss_pred             --EEEEEcCCc-ccccccc-cCCcEEEeCCC
Q 025360          223 --IWGNIGDQW-SDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       223 --i~~~IGDq~-sDi~ga~-~g~r~fklPNp  249 (254)
                        .+++|||+. +|+.++. +|..++.++..
T Consensus       175 ~~~~~~iGD~~~nDi~~a~~aG~~~~~~~~~  205 (235)
T 2om6_A          175 PEESLHIGDTYAEDYQGARKVGMWAVWINQE  205 (235)
T ss_dssp             GGGEEEEESCTTTTHHHHHHTTSEEEEECTT
T ss_pred             ccceEEECCChHHHHHHHHHCCCEEEEECCC
Confidence              599999999 9999987 78888887543

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=99.38  E-value=2.4e-14  Score=118.67  Aligned_cols=126  Identities=10%  Similarity=-0.044  Sum_probs=85.4

Q ss_pred             CceEEEecCCccccchhhhhhhc---c-CCCCCC--------------------hHHHHHHHHh----CCCCCchHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKR---Y-GCDPYD--------------------PAGFRAWALK----GGCPAIPGVLVL  152 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~---~-g~~~~~--------------------~~~~~~~~~~----~~~~~~pg~~el  152 (254)
                      +++||||+||||+|+.+.+....   + |....+                    ...+.+....    ...+++||+.++
T Consensus         2 ~k~viFDlDGTL~Ds~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~e~   81 (193)
T 2i7d_A            2 SVRVLVDMDGVLADFEAGLLRGFRRRFPEEPHVPLEQRRGFLAREQYRALRPDLADKVASVYEAPGFFLDLEPIPGALDA   81 (193)
T ss_dssp             CEEEEECSBTTTBCHHHHHHHHHHHHSTTSCCCCGGGCCSSCHHHHHHHHCTTHHHHHHHHHTSTTTTTTCCBCTTHHHH
T ss_pred             CcEEEEECCCcCccchhHHHHHHHHHhcCCCCCCHHHHHHhhHHHHHHHHhHHHHHHHHHHHHhcCccccCccCcCHHHH
Confidence            67999999999999976554321   1 211111                    0122232222    246789999999


Q ss_pred             HHHHHHC-CCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcC
Q 025360          153 FNKLIES-GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGD  229 (254)
Q Consensus       153 l~~L~~~-G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGD  229 (254)
                      ++.|+++ |++++++||++    +..+...|+++|+  ++ .++.+                ..+++.|.  ..+++|||
T Consensus        82 L~~L~~~~g~~~~ivT~~~----~~~~~~~l~~~gl--f~-~i~~~----------------~~~~~~~~~~~~~~~vgD  138 (193)
T 2i7d_A           82 VREMNDLPDTQVFICTSPL----LKYHHCVGEKYRW--VE-QHLGP----------------QFVERIILTRDKTVVLGD  138 (193)
T ss_dssp             HHHHHTSTTEEEEEEECCC----SSCTTTHHHHHHH--HH-HHHCH----------------HHHTTEEECSCGGGBCCS
T ss_pred             HHHHHhCCCCeEEEEeCCC----hhhHHHHHHHhCc--hh-hhcCH----------------HHHHHcCCCcccEEEECC
Confidence            9999999 99999999998    3344556777776  32 22221                12344443  34889999


Q ss_pred             Cccc----ccccc--cCCcEEEeCCC
Q 025360          230 QWSD----LQGEC--TGNRTFKLPNP  249 (254)
Q Consensus       230 q~sD----i~ga~--~g~r~fklPNp  249 (254)
                      +.+|    +.+|.  +|.+++.+++|
T Consensus       139 s~~dD~~~i~~A~~~aG~~~i~~~~~  164 (193)
T 2i7d_A          139 LLIDDKDTVRGQEETPSWEHILFTCC  164 (193)
T ss_dssp             EEEESSSCCCSSCSSCSSEEEEECCG
T ss_pred             chhhCcHHHhhcccccccceEEEEec
Confidence            9999    99886  79999999875

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=99.38  E-value=1.8e-12  Score=106.05  Aligned_cols=126  Identities=11%  Similarity=0.047  Sum_probs=86.9

Q ss_pred             CceEEEecCCccccchhhhhhh---ccCCC---------C----C--ChHHHHHHHHh----CCCCCchHHHHHHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGK---RYGCD---------P----Y--DPAGFRAWALK----GGCPAIPGVLVLFNKLIE  158 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~---~~g~~---------~----~--~~~~~~~~~~~----~~~~~~pg~~ell~~L~~  158 (254)
                      +++||||+||||+|+.+.+...   .+|..         .    +  ..+.+.++...    ...+++||+.++|+.|++
T Consensus         4 ~~~viFD~DGtL~Ds~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~   83 (180)
T 3bwv_A            4 RQRIAIDMDEVLADTLGAVVKAVNERADLNIKMESLNGKKLKHMIPEHEGLVMDILKEPGFFRNLDVMPHAQEVVKQLNE   83 (180)
T ss_dssp             CCEEEEETBTTTBCHHHHHHHHHHHHSCCCCCGGGCTTCCC--------CHHHHHHHSTTGGGSCCBCTTHHHHHHHHTT
T ss_pred             ccEEEEeCCCcccccHHHHHHHHHHHhCCCCCHHHHcCccHHHHCCchHHHHHHHHhCcchhccCCCCcCHHHHHHHHHh
Confidence            4799999999999998765331   13311         0    1  11234444322    246899999999999998


Q ss_pred             CCCeEEEEeCCCcc--ccHHHHHHHHHh-CCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCccccc
Q 025360          159 SGLKVILVTGRDEE--TFGQVTRDNLHN-QGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQ  235 (254)
Q Consensus       159 ~G~~i~~vTgR~~e--~~r~~T~~~L~~-~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~  235 (254)
                      + ++++++||+. .  .....+..+|.+ .|...+++.++++++.              .+     ..|++|||+.+|+.
T Consensus        84 ~-~~~~i~T~~~-~~~~~~~~~~~~l~~~f~~~~~~~~i~~~~~~--------------~l-----~~~l~ieDs~~~i~  142 (180)
T 3bwv_A           84 H-YDIYIATAAM-DVPTSFHDKYEWLLEYFPFLDPQHFVFCGRKN--------------II-----LADYLIDDNPKQLE  142 (180)
T ss_dssp             T-SEEEEEECC---CCSHHHHHHHHHHHHCTTSCGGGEEECSCGG--------------GB-----CCSEEEESCHHHHH
T ss_pred             c-CCEEEEeCCC-CcchHHHHHHHHHHHHcCCCCcccEEEeCCcC--------------ee-----cccEEecCCcchHH
Confidence            5 9999999994 3  123466778887 5665577788876531              01     44789999999997


Q ss_pred             ccccCCcEEEeCCC
Q 025360          236 GECTGNRTFKLPNP  249 (254)
Q Consensus       236 ga~~g~r~fklPNp  249 (254)
                      .+ +| +++.+|++
T Consensus       143 ~a-aG-~~i~~~~~  154 (180)
T 3bwv_A          143 IF-EG-KSIMFTAS  154 (180)
T ss_dssp             HC-SS-EEEEECCG
T ss_pred             Hh-CC-CeEEeCCC
Confidence            54 69 99999865

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=99.38  E-value=2.5e-12  Score=105.71  Aligned_cols=101  Identities=16%  Similarity=0.057  Sum_probs=69.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC--CCc--EEEecCC-----CCCCCCcccHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG--YER--LIMRTAA-----DKGKNAVTYKSEI  212 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~--~~~--lilr~~~-----~~~kp~~~yK~~~  212 (254)
                      ...+.|++.++++.|+++|++++++||..    +..+...++.+|+..  ++.  ++...++     ...+|.+..+...
T Consensus        80 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (219)
T 3kd3_A           80 PNLLTDGIKELVQDLKNKGFEIWIFSGGL----SESIQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSA  155 (219)
T ss_dssp             TTTBCTTHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHH
T ss_pred             cccCChhHHHHHHHHHHCCCeEEEEcCCc----HHHHHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHH
Confidence            35688999999999999999999999998    777888899999953  221  3332322     1234433333222


Q ss_pred             HHHHHHcCCcEEEEEcCCcccccccccCCcEEEe
Q 025360          213 RKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFKL  246 (254)
Q Consensus       213 r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fkl  246 (254)
                      ..+........+++|||+.+|+.++.+|.+++.+
T Consensus       156 l~~~~~~~~~~~~~vGD~~~Di~~~~~G~~~~~v  189 (219)
T 3kd3_A          156 FDKAKGLIDGEVIAIGDGYTDYQLYEKGYATKFI  189 (219)
T ss_dssp             HHHHGGGCCSEEEEEESSHHHHHHHHHTSCSEEE
T ss_pred             HHHHhCCCCCCEEEEECCHhHHHHHhCCCCcEEE
Confidence            2222122345799999999999998888876555

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=99.36  E-value=1.8e-12  Score=109.18  Aligned_cols=97  Identities=14%  Similarity=0.095  Sum_probs=75.4

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++|++.++++.|+++ ++++++||.+    +......|+.+|+. ++. ++..+. ..+||.   ....+..++..|.
T Consensus       115 ~~~~~~~~~~l~~l~~~-~~~~i~t~~~----~~~~~~~l~~~~~~-f~~-~~~~~~~~~~kp~---~~~~~~~~~~lgi  184 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAE-YIIGPLSNGN----TSLLLDMAKNAGIP-WDV-IIGSDINRKYKPD---PQAYLRTAQVLGL  184 (254)
T ss_dssp             CCBCTTHHHHHHHHHHH-SEEEECSSSC----HHHHHHHHHHHTCC-CSC-CCCHHHHTCCTTS---HHHHHHHHHHTTC
T ss_pred             CcCCcCHHHHHHHHHhC-CeEEEEeCCC----HHHHHHHHHhCCCC-eeE-EEEcCcCCCCCCC---HHHHHHHHHHcCC
Confidence            46789999999999997 9999999999    67777888888986 443 334333 455654   3455556777776


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .  .+++|||+.+|+.++. +|.+++.+.++
T Consensus       185 ~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~~  215 (254)
T 3umg_A          185 HPGEVMLAAAHNGDLEAAHATGLATAFILRP  215 (254)
T ss_dssp             CGGGEEEEESCHHHHHHHHHTTCEEEEECCT
T ss_pred             ChHHEEEEeCChHhHHHHHHCCCEEEEEecC
Confidence            4  5999999999999998 89999998754

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=99.36  E-value=8e-13  Score=118.92  Aligned_cols=139  Identities=15%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             CCCCceEEEecCCccccchhhhhh-hccC--------------CC---------------CCChHHHHHHHHhCCCCCch
Q 025360           98 GDGMDAWILDVDDTCISNVYYYKG-KRYG--------------CD---------------PYDPAGFRAWALKGGCPAIP  147 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~~~~~-~~~g--------------~~---------------~~~~~~~~~~~~~~~~~~~p  147 (254)
                      ...+++|+||+||||+++.....- ..+|              +.               ....+.+.+|..  ..++.|
T Consensus       105 ~~~~kaviFDlDGTLid~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~l~~~~~~l~~~~~~~i~~~~~--~~~l~p  182 (317)
T 4eze_A          105 LPANGIIAFDMDSTFIAEEGVDEIARELGMSTQITAITQQAMEGKLDFNASFTRRIGMLKGTPKAVLNAVCD--RMTLSP  182 (317)
T ss_dssp             CCCSCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTSSCHHHHHHHHHHTTTTCBHHHHHHHHH--TCCBCT
T ss_pred             CCCCCEEEEcCCCCccCCccHHHHHHHhCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCCCHHHHHHHHh--CCEECc
Confidence            356899999999999997632111 0111              00               112333444443  467999


Q ss_pred             HHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-----------CCCCCCcccHHHHHHHH
Q 025360          148 GVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-----------DKGKNAVTYKSEIRKQL  216 (254)
Q Consensus       148 g~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-----------~~~kp~~~yK~~~r~~l  216 (254)
                      |+.++++.|+++|++++++||..    +..+...++++|+..++..++...+           ..+||.   ....+..+
T Consensus       183 g~~e~L~~Lk~~G~~v~IvSn~~----~~~~~~~l~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpk---p~~~~~~~  255 (317)
T 4eze_A          183 GLLTILPVIKAKGFKTAIISGGL----DIFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANK---KQTLVDLA  255 (317)
T ss_dssp             THHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHHTCSEEEEECEEEETTEEEEEECSSCCCHHHH---HHHHHHHH
T ss_pred             CHHHHHHHHHhCCCEEEEEeCcc----HHHHHHHHHHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCC---HHHHHHHH
Confidence            99999999999999999999999    7888899999999876554332111           112221   23344455


Q ss_pred             HHcCC--cEEEEEcCCcccccccc-cCCcEEE
Q 025360          217 LEEGY--RIWGNIGDQWSDLQGEC-TGNRTFK  245 (254)
Q Consensus       217 ~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fk  245 (254)
                      +..|.  ..+++|||+.+|+.++. +|..+..
T Consensus       256 ~~lgv~~~~~i~VGDs~~Di~aa~~AG~~va~  287 (317)
T 4eze_A          256 ARLNIATENIIACGDGANDLPMLEHAGTGIAW  287 (317)
T ss_dssp             HHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE
T ss_pred             HHcCCCcceEEEEeCCHHHHHHHHHCCCeEEe
Confidence            66665  45999999999999998 6654443

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=99.35  E-value=1e-11  Score=103.54  Aligned_cols=96  Identities=16%  Similarity=0.211  Sum_probs=75.1

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ....++|++.++++.|+++ ++++++||.+ ..        |+..|+..+++.++..+. ..+||.+   ...+..++..
T Consensus       102 ~~~~~~~~~~~~l~~l~~~-~~~~i~t~~~-~~--------l~~~~l~~~f~~~~~~~~~~~~kp~~---~~~~~~~~~~  168 (230)
T 3vay_A          102 HQVQIFPEVQPTLEILAKT-FTLGVITNGN-AD--------VRRLGLADYFAFALCAEDLGIGKPDP---APFLEALRRA  168 (230)
T ss_dssp             TCCCBCTTHHHHHHHHHTT-SEEEEEESSC-CC--------GGGSTTGGGCSEEEEHHHHTCCTTSH---HHHHHHHHHH
T ss_pred             ccCccCcCHHHHHHHHHhC-CeEEEEECCc-hh--------hhhcCcHHHeeeeEEccccCCCCcCH---HHHHHHHHHh
Confidence            3467999999999999999 9999999998 43        788899888777777654 5556543   4444556666


Q ss_pred             CCc--EEEEEcCCc-ccccccc-cCCcEEEeCCC
Q 025360          220 GYR--IWGNIGDQW-SDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy~--i~~~IGDq~-sDi~ga~-~g~r~fklPNp  249 (254)
                      |..  .+++|||+. +|+.++. +|.+++.+..+
T Consensus       169 ~~~~~~~~~vGD~~~~Di~~a~~aG~~~~~v~~~  202 (230)
T 3vay_A          169 KVDASAAVHVGDHPSDDIAGAQQAGMRAIWYNPQ  202 (230)
T ss_dssp             TCCGGGEEEEESCTTTTHHHHHHTTCEEEEECTT
T ss_pred             CCCchheEEEeCChHHHHHHHHHCCCEEEEEcCC
Confidence            654  599999997 9999998 89999887554

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=99.34  E-value=4e-12  Score=104.99  Aligned_cols=96  Identities=19%  Similarity=0.180  Sum_probs=73.8

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..+.|++.++++.|++.|++++++|+..      .....|+..|+..+++.++..+. ...||.+   ...+..++..|.
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~------~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~---~~~~~~~~~lgi  160 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASASK------NGPFLLERMNLTGYFDAIADPAEVAASKPAP---DIFIAAAHAVGV  160 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCCT------THHHHHHHTTCGGGCSEECCTTTSSSCTTSS---HHHHHHHHHTTC
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCcH------HHHHHHHHcChHHHcceEeccccCCCCCCCh---HHHHHHHHHcCC
Confidence            4678999999999999999999999974      23457788899877777766654 4456543   344455666775


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      .  .+++|||+.+|+.++. +|..++.+.
T Consensus       161 ~~~~~i~iGD~~nDi~~a~~aG~~~~~~~  189 (221)
T 2wf7_A          161 APSESIGLEDSQAGIQAIKDSGALPIGVG  189 (221)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEES
T ss_pred             ChhHeEEEeCCHHHHHHHHHCCCEEEEEC
Confidence            4  5999999999999997 788887764

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=99.33  E-value=2.4e-12  Score=109.51  Aligned_cols=96  Identities=15%  Similarity=0.060  Sum_probs=67.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CC--------CCCCcc--cH-
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DK--------GKNAVT--YK-  209 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~--------~kp~~~--yK-  209 (254)
                      ..+++||+.++++.|+++|++++++||.+    +..+...|+  |+..++. ++..+. ..        +||.+.  +. 
T Consensus        75 ~~~~~pg~~~~l~~L~~~g~~~~ivS~~~----~~~~~~~l~--~l~~~~~-v~~~~~~~~~~~~~~~~~kp~p~~~~~~  147 (236)
T 2fea_A           75 DAKIREGFREFVAFINEHEIPFYVISGGM----DFFVYPLLE--GIVEKDR-IYCNHASFDNDYIHIDWPHSCKGTCSNQ  147 (236)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEE----HHHHHHHHT--TTSCGGG-EEEEEEECSSSBCEEECTTCCCTTCCSC
T ss_pred             CCCCCccHHHHHHHHHhCCCeEEEEeCCc----HHHHHHHHh--cCCCCCe-EEeeeeEEcCCceEEecCCCCccccccc
Confidence            46899999999999999999999999999    667777777  8755644 444333 22        566543  31 


Q ss_pred             --HHHHHHHHHcC--CcEEEEEcCCcccccccc-cCCcEE
Q 025360          210 --SEIRKQLLEEG--YRIWGNIGDQWSDLQGEC-TGNRTF  244 (254)
Q Consensus       210 --~~~r~~l~~~G--y~i~~~IGDq~sDi~ga~-~g~r~f  244 (254)
                        ......+++.|  ...+++|||+.+|+.++. +|..++
T Consensus       148 ~~~~K~~~~~~~~~~~~~~~~vGDs~~Di~~a~~aG~~~~  187 (236)
T 2fea_A          148 CGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFA  187 (236)
T ss_dssp             CSSCHHHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEE
T ss_pred             cCCcHHHHHHHHhccCCeEEEEeCChHHHHHHHhCCeeee
Confidence              00012333434  357999999999999988 566553

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.33  E-value=1.7e-12  Score=104.23  Aligned_cols=116  Identities=17%  Similarity=0.139  Sum_probs=81.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||+++..++....                .......|++.++++.|+++|++++++||++    +..+..
T Consensus         9 ~k~v~~DlDGTL~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~----~~~~~~   68 (162)
T 2p9j_A            9 LKLLIMDIDGVLTDGKLYYTEHG----------------ETIKVFNVLDGIGIKLLQKMGITLAVISGRD----SAPLIT   68 (162)
T ss_dssp             CCEEEECCTTTTSCSEEEEETTE----------------EEEEEEEHHHHHHHHHHHTTTCEEEEEESCC----CHHHHH
T ss_pred             eeEEEEecCcceECCceeecCCC----------------ceeeeecccHHHHHHHHHHCCCEEEEEeCCC----cHHHHH
Confidence            67999999999998653322100                0012245778999999999999999999999    677788


Q ss_pred             HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      .|+++|+..++.    .    +||.   ....+..++..|..  .+++|||+.+|+.++. +|.. +.+.|
T Consensus        69 ~l~~~gl~~~~~----~----~kp~---~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~ag~~-~~~~~  127 (162)
T 2p9j_A           69 RLKELGVEEIYT----G----SYKK---LEIYEKIKEKYSLKDEEIGFIGDDVVDIEVMKKVGFP-VAVRN  127 (162)
T ss_dssp             HHHHTTCCEEEE----C----C--C---HHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEE-EECTT
T ss_pred             HHHHcCCHhhcc----C----CCCC---HHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCe-EEecC
Confidence            899999875332    1    3332   23444456666654  5999999999999988 6765 44544

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=99.33  E-value=8.2e-14  Score=115.94  Aligned_cols=127  Identities=11%  Similarity=-0.018  Sum_probs=82.8

Q ss_pred             CCCceEEEecCCccccchhhhhhhc---cCCC---------CCC---------hHHHHH---HHHh----CCCCCchHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKR---YGCD---------PYD---------PAGFRA---WALK----GGCPAIPGVL  150 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~---~g~~---------~~~---------~~~~~~---~~~~----~~~~~~pg~~  150 (254)
                      +.+++||||+||||+|+.+.+....   +...         .+.         +....+   ....    ...+++||+.
T Consensus         2 ~~~k~viFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   81 (197)
T 1q92_A            2 GRALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAV   81 (197)
T ss_dssp             CCCEEEEECSBTTTBCHHHHHHHHHHHHCTTSCCCCGGGCCSSCHHHHHHHHSTTHHHHHHHHHTSTTTTTTCCBCTTHH
T ss_pred             CCceEEEEeCCCCCccCcHHHHHHHHHHHhcCCCCCHHHhcCCcHHHHHHhcCHHHHHHHHHHHHhhhhhhcCCcCcCHH
Confidence            5678999999999999987554321   1100         011         111111   2211    2457899999


Q ss_pred             HHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHhCCCCC-CCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEE
Q 025360          151 VLFNKLIES-GLKVILVTGRDEETFGQVTRDNLHNQGFVG-YERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGN  226 (254)
Q Consensus       151 ell~~L~~~-G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~-~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~  226 (254)
                      ++++.|+++ |++++++||++ ..   .....|++.|+.. |+.                    ...++..|.  ..+++
T Consensus        82 e~L~~L~~~~g~~~~ivT~~~-~~---~~~~~l~~~~l~~~~f~--------------------~~~~~~l~~~~~~~~~  137 (197)
T 1q92_A           82 EAVKEMASLQNTDVFICTSPI-KM---FKYCPYEKYAWVEKYFG--------------------PDFLEQIVLTRDKTVV  137 (197)
T ss_dssp             HHHHHHHHSTTEEEEEEECCC-SC---CSSHHHHHHHHHHHHHC--------------------GGGGGGEEECSCSTTS
T ss_pred             HHHHHHHhcCCCeEEEEeCCc-cc---hHHHHHHHhchHHHhch--------------------HHHHHHhccCCccEEE
Confidence            999999999 99999999998 32   2334455556544 432                    011222222  24678


Q ss_pred             EcCCccc----ccccc--cCCcEEEeCCC
Q 025360          227 IGDQWSD----LQGEC--TGNRTFKLPNP  249 (254)
Q Consensus       227 IGDq~sD----i~ga~--~g~r~fklPNp  249 (254)
                      |||+..|    +.+|.  +|.+++.+++|
T Consensus       138 vgDs~~dD~~~~~~a~~~aG~~~i~~~~~  166 (197)
T 1q92_A          138 SADLLIDDRPDITGAEPTPSWEHVLFTAC  166 (197)
T ss_dssp             CCSEEEESCSCCCCSCSSCSSEEEEECCT
T ss_pred             ECcccccCCchhhhcccCCCceEEEecCc
Confidence            9999999    98885  79999999876

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=99.33  E-value=5.1e-12  Score=109.89  Aligned_cols=99  Identities=13%  Similarity=0.101  Sum_probs=77.1

Q ss_pred             CCCCchHHHHHHHHHHHC-CCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIES-GLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++|++.++++.|+++ |++++++|+..    +..+...|+.+|+.. ++.++..++ ..+||.+   ...+..++..
T Consensus       112 ~~~~~~g~~~~L~~l~~~~g~~l~i~T~~~----~~~~~~~l~~~~l~~-f~~i~~~~~~~~~kp~~---~~~~~~~~~l  183 (275)
T 2qlt_A          112 HSIEVPGAVKLCNALNALPKEKWAVATSGT----RDMAKKWFDILKIKR-PEYFITANDVKQGKPHP---EPYLKGRNGL  183 (275)
T ss_dssp             TCEECTTHHHHHHHHHTSCGGGEEEECSSC----HHHHHHHHHHHTCCC-CSSEECGGGCSSCTTSS---HHHHHHHHHT
T ss_pred             CCCcCcCHHHHHHHHHhccCCeEEEEeCCC----HHHHHHHHHHcCCCc-cCEEEEcccCCCCCCCh---HHHHHHHHHc
Confidence            457899999999999999 99999999999    677788888889874 455555544 4555543   3344456666


Q ss_pred             CC-------c--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          220 GY-------R--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy-------~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      |.       .  .+++|||+.+|+.++. +|..++.++.
T Consensus       184 gi~~~~~~~~~~~~i~~GDs~nDi~~a~~AG~~~i~v~~  222 (275)
T 2qlt_A          184 GFPINEQDPSKSKVVVFEDAPAGIAAGKAAGCKIVGIAT  222 (275)
T ss_dssp             TCCCCSSCGGGSCEEEEESSHHHHHHHHHTTCEEEEESS
T ss_pred             CCCccccCCCcceEEEEeCCHHHHHHHHHcCCEEEEECC
Confidence            76       3  5999999999999997 7888888765

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=99.32  E-value=5.8e-12  Score=107.89  Aligned_cols=101  Identities=21%  Similarity=0.222  Sum_probs=74.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++|++.++++.|+++|++++++|+.+    +......++.+|+..++ +.+...+. ..+||.+   ..+...++..
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~---~~~~~~~~~l  173 (267)
T 1swv_A          101 YASPINGVKEVIASLRERGIKIGSTTGYT----REMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYP---WMCYKNAMEL  173 (267)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEBCSSC----HHHHHHHHHHHHHTTCCCSCCBCGGGSSCCTTSS---HHHHHHHHHH
T ss_pred             ccccCccHHHHHHHHHHcCCeEEEEcCCC----HHHHHHHHHHcCCcccChHheecCCccCCCCCCH---HHHHHHHHHh
Confidence            45789999999999999999999999998    55566667776766553 55555443 3455533   3444455666


Q ss_pred             CC---cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          220 GY---RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy---~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      |.   ..+++|||+.+|+.++. +|..++.+.+.
T Consensus       174 gi~~~~~~i~iGD~~nDi~~a~~aG~~~i~v~~~  207 (267)
T 1swv_A          174 GVYPMNHMIKVGDTVSDMKEGRNAGMWTVGVILG  207 (267)
T ss_dssp             TCCSGGGEEEEESSHHHHHHHHHTTSEEEEECTT
T ss_pred             CCCCCcCEEEEeCCHHHHHHHHHCCCEEEEEcCC
Confidence            75   45999999999999987 78888887654

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=99.30  E-value=4.6e-12  Score=107.23  Aligned_cols=96  Identities=10%  Similarity=0.015  Sum_probs=73.8

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++|++.++++.|++. ++++++||.+    +......|+.+|+. + +.+...+. ..+||.+   ...+..++..|.
T Consensus       119 ~~~~~~~~~~l~~l~~~-~~~~i~s~~~----~~~~~~~l~~~g~~-f-~~~~~~~~~~~~kp~~---~~~~~~~~~lgi  188 (254)
T 3umc_A          119 LRPWPDTLAGMHALKAD-YWLAALSNGN----TALMLDVARHAGLP-W-DMLLCADLFGHYKPDP---QVYLGACRLLDL  188 (254)
T ss_dssp             CEECTTHHHHHHHHTTT-SEEEECCSSC----HHHHHHHHHHHTCC-C-SEECCHHHHTCCTTSH---HHHHHHHHHHTC
T ss_pred             CCCCccHHHHHHHHHhc-CeEEEEeCCC----HHHHHHHHHHcCCC-c-ceEEeecccccCCCCH---HHHHHHHHHcCC
Confidence            35789999999999986 9999999999    67777888888986 4 44544433 4556543   344445666676


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      .  .+++|||+.+|+.++. +|.+++.+..
T Consensus       189 ~~~~~~~iGD~~~Di~~a~~aG~~~~~~~~  218 (254)
T 3umc_A          189 PPQEVMLCAAHNYDLKAARALGLKTAFIAR  218 (254)
T ss_dssp             CGGGEEEEESCHHHHHHHHHTTCEEEEECC
T ss_pred             ChHHEEEEcCchHhHHHHHHCCCeEEEEec
Confidence            4  5999999999999998 8999998864

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.30  E-value=3e-12  Score=118.93  Aligned_cols=101  Identities=11%  Similarity=-0.035  Sum_probs=73.9

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCC--CccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGR--DEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR--~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ..++||+.++|+.|+++|++++++||.  .....+......+.  |+..+++.++.+++ ..+||++   ......++..
T Consensus        99 ~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~--~l~~~fd~i~~~~~~~~~KP~p---~~~~~~~~~l  173 (555)
T 3i28_A           99 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMC--ELKMHFDFLIESCQVGMVKPEP---QIYKFLLDTL  173 (555)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHH--HHHTTSSEEEEHHHHTCCTTCH---HHHHHHHHHH
T ss_pred             cCcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhh--hhhhheeEEEeccccCCCCCCH---HHHHHHHHHc
Confidence            578999999999999999999999998  20223444443333  55556776777655 6677764   3333456666


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      |..  .|++|||+.+|+.++. +|++++.+++
T Consensus       174 g~~p~~~~~v~D~~~di~~a~~aG~~~~~~~~  205 (555)
T 3i28_A          174 KASPSEVVFLDDIGANLKPARDLGMVTILVQD  205 (555)
T ss_dssp             TCCGGGEEEEESCHHHHHHHHHHTCEEEECSS
T ss_pred             CCChhHEEEECCcHHHHHHHHHcCCEEEEECC
Confidence            664  5999999999999998 8999988865

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=99.29  E-value=2.4e-12  Score=108.89  Aligned_cols=95  Identities=12%  Similarity=0.075  Sum_probs=68.2

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..+++||+.++++.|+++| +++++||++    +..+...|+++|+..++..+...  ..+||  .+.....+   ....
T Consensus        94 ~~~~~~g~~~~l~~l~~~g-~~~i~Tn~~----~~~~~~~l~~~gl~~~f~~~~~~--~~~K~--~~~~~~~~---~~~~  161 (231)
T 2p11_A           94 ASRVYPGALNALRHLGARG-PTVILSDGD----VVFQPRKIARSGLWDEVEGRVLI--YIHKE--LMLDQVME---CYPA  161 (231)
T ss_dssp             GGGBCTTHHHHHHHHHTTS-CEEEEEECC----SSHHHHHHHHTTHHHHTTTCEEE--ESSGG--GCHHHHHH---HSCC
T ss_pred             hCCcCccHHHHHHHHHhCC-CEEEEeCCC----HHHHHHHHHHcCcHHhcCeeEEe--cCChH--HHHHHHHh---cCCC
Confidence            3578999999999999999 999999999    56777889999987654322211  12332  23322222   2344


Q ss_pred             cEEEEEcCCcc---cccccc-cCCcEEEeCC
Q 025360          222 RIWGNIGDQWS---DLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       222 ~i~~~IGDq~s---Di~ga~-~g~r~fklPN  248 (254)
                      ..+++|||+.+   |+.+|+ +|.+++.++.
T Consensus       162 ~~~~~vgDs~~d~~di~~A~~aG~~~i~v~~  192 (231)
T 2p11_A          162 RHYVMVDDKLRILAAMKKAWGARLTTVFPRQ  192 (231)
T ss_dssp             SEEEEECSCHHHHHHHHHHHGGGEEEEEECC
T ss_pred             ceEEEEcCccchhhhhHHHHHcCCeEEEeCC
Confidence            57999999999   888876 7888888764

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.28  E-value=1.6e-12  Score=107.95  Aligned_cols=118  Identities=18%  Similarity=0.230  Sum_probs=78.4

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++||||+||||+++..++.....-...|.              ..++.  +++.|+++|++++++||++    +..+.
T Consensus        18 ~ik~vifD~DGTL~d~~~~~~~~~~~~~~~~--------------~~~~~--~l~~L~~~g~~~~i~T~~~----~~~~~   77 (189)
T 3mn1_A           18 AIKLAVFDVDGVLTDGRLYFMEDGSEIKTFN--------------TLDGQ--GIKMLIASGVTTAIISGRK----TAIVE   77 (189)
T ss_dssp             TCCEEEECSTTTTSCSEEEEETTSCEEEEEE--------------HHHHH--HHHHHHHTTCEEEEECSSC----CHHHH
T ss_pred             hCCEEEEcCCCCcCCccEeeccCCcEeeeec--------------cccHH--HHHHHHHCCCEEEEEECcC----hHHHH
Confidence            3689999999999998654432110000010              01111  8999999999999999999    77888


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCC
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      ..++++|+..++..+      ..||     ..++..++..|.  ..+++|||+.+|+.++....-.+.+.|
T Consensus        78 ~~~~~lgl~~~f~~~------~~K~-----~~~~~~~~~~g~~~~~~~~vGD~~nDi~~~~~ag~~~~~~~  137 (189)
T 3mn1_A           78 RRAKSLGIEHLFQGR------EDKL-----VVLDKLLAELQLGYEQVAYLGDDLPDLPVIRRVGLGMAVAN  137 (189)
T ss_dssp             HHHHHHTCSEEECSC------SCHH-----HHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTT
T ss_pred             HHHHHcCCHHHhcCc------CChH-----HHHHHHHHHcCCChhHEEEECCCHHHHHHHHHCCCeEEeCC
Confidence            899999997543321      3332     444455566664  459999999999999983333444434

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.27  E-value=2.3e-12  Score=109.51  Aligned_cols=118  Identities=18%  Similarity=0.199  Sum_probs=78.3

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++||||+||||+|+..++.....-...+.              ..++.  +++.|+++|++++++||++    +..+.
T Consensus        48 ~ik~viFDlDGTL~Ds~~~~~~~~~~~~~~~--------------~~d~~--~L~~L~~~G~~l~I~T~~~----~~~~~  107 (211)
T 3ij5_A           48 NIRLLICDVDGVMSDGLIYMGNQGEELKAFN--------------VRDGY--GIRCLITSDIDVAIITGRR----AKLLE  107 (211)
T ss_dssp             TCSEEEECCTTTTSSSEEEEETTSCEEEEEE--------------HHHHH--HHHHHHHTTCEEEEECSSC----CHHHH
T ss_pred             CCCEEEEeCCCCEECCHHHHhhhhHHHHHhc--------------cchHH--HHHHHHHCCCEEEEEeCCC----HHHHH
Confidence            3689999999999998754432110000010              11111  8999999999999999999    67888


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCC
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      ..++++|+..++..+      +.|     ...++..++..|.  ..+++|||+.+|+.+++...-.+.+.|
T Consensus       108 ~~l~~lgi~~~f~~~------k~K-----~~~l~~~~~~lg~~~~~~~~vGDs~nDi~~~~~ag~~~a~~~  167 (211)
T 3ij5_A          108 DRANTLGITHLYQGQ------SDK-----LVAYHELLATLQCQPEQVAYIGDDLIDWPVMAQVGLSVAVAD  167 (211)
T ss_dssp             HHHHHHTCCEEECSC------SSH-----HHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEECTT
T ss_pred             HHHHHcCCchhhccc------CCh-----HHHHHHHHHHcCcCcceEEEEcCCHHHHHHHHHCCCEEEeCC
Confidence            899999997543211      222     2344445555664  469999999999999884334444433

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=99.26  E-value=4.5e-12  Score=101.95  Aligned_cols=118  Identities=13%  Similarity=0.050  Sum_probs=76.9

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++|+||+||||+++..++.........|.              ..++  .+++.|+++|++++++||++    +..+.
T Consensus         3 ~ik~vifD~DGTL~~~~~~~~~~~~~~~~~~--------------~~~~--~~l~~l~~~g~~~~i~T~~~----~~~~~   62 (164)
T 3e8m_A            3 EIKLILTDIDGVWTDGGMFYDQTGNEWKKFN--------------TSDS--AGIFWAHNKGIPVGILTGEK----TEIVR   62 (164)
T ss_dssp             CCCEEEECSTTTTSSSEEEECSSSCEEEEEE--------------GGGH--HHHHHHHHTTCCEEEECSSC----CHHHH
T ss_pred             cceEEEEcCCCceEcCcEEEcCCCcEEEEec--------------CChH--HHHHHHHHCCCEEEEEeCCC----hHHHH
Confidence            4689999999999997644322110000010              0111  27899999999999999999    67888


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCC
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      ..++++|+..++..        .||.   ...++..++..|.  ..+++|||+.+|+.++....-.+.+.|
T Consensus        63 ~~~~~~gl~~~~~~--------~kpk---~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~~~~~  122 (164)
T 3e8m_A           63 RRAEKLKVDYLFQG--------VVDK---LSAAEELCNELGINLEQVAYIGDDLNDAKLLKRVGIAGVPAS  122 (164)
T ss_dssp             HHHHHTTCSEEECS--------CSCH---HHHHHHHHHHHTCCGGGEEEECCSGGGHHHHTTSSEEECCTT
T ss_pred             HHHHHcCCCEeecc--------cCCh---HHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEcCC
Confidence            89999999754321        1332   2333444555554  469999999999999984323444433

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=99.26  E-value=6.8e-12  Score=103.04  Aligned_cols=118  Identities=15%  Similarity=0.160  Sum_probs=76.8

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++||||+||||++...++.....-...|.   .           .++.  +++.|+++|++++++||++    +..+.
T Consensus        11 ~~k~vifD~DGTL~d~~~~~~~~~~~~~~~~---~-----------~~~~--~l~~L~~~g~~~~i~T~~~----~~~~~   70 (176)
T 3mmz_A           11 DIDAVVLDFDGTQTDDRVLIDSDGREFVSVH---R-----------GDGL--GIAALRKSGLTMLILSTEQ----NPVVA   70 (176)
T ss_dssp             GCSEEEECCTTTTSCSCCEECTTCCEEEEEE---H-----------HHHH--HHHHHHHTTCEEEEEESSC----CHHHH
T ss_pred             cCCEEEEeCCCCcCcCCEeecCCccHhHhcc---c-----------ccHH--HHHHHHHCCCeEEEEECcC----hHHHH
Confidence            3689999999999995443321100000010   0           0111  8999999999999999999    67788


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCCC
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPNp  249 (254)
                      ..++.+|+.     ++.+.  ++|     ...+++.++..|.  ..+++|||+.+|+.++......+.+.|+
T Consensus        71 ~~~~~lgi~-----~~~~~--~~k-----~~~l~~~~~~~~~~~~~~~~vGD~~nD~~~~~~ag~~v~~~~~  130 (176)
T 3mmz_A           71 ARARKLKIP-----VLHGI--DRK-----DLALKQWCEEQGIAPERVLYVGNDVNDLPCFALVGWPVAVASA  130 (176)
T ss_dssp             HHHHHHTCC-----EEESC--SCH-----HHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTC
T ss_pred             HHHHHcCCe-----eEeCC--CCh-----HHHHHHHHHHcCCCHHHEEEEcCCHHHHHHHHHCCCeEECCCh
Confidence            889999996     22221  222     2344445555564  3589999999999998843355555443

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=99.26  E-value=1.5e-11  Score=100.71  Aligned_cols=97  Identities=16%  Similarity=0.039  Sum_probs=64.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEE-ecCC-CCC-----CCCcccH-HHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIM-RTAA-DKG-----KNAVTYK-SEIR  213 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lil-r~~~-~~~-----kp~~~yK-~~~r  213 (254)
                      ..++.|++.++++.|+++|++++++|||.    +..+...++.+|+..++...+ ..++ ..+     .....-| ..+.
T Consensus        74 ~~~l~~~~~~~l~~l~~~g~~~~i~T~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~  149 (211)
T 1l7m_A           74 RITPTEGAEETIKELKNRGYVVAVVSGGF----DIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILE  149 (211)
T ss_dssp             TCCBCTTHHHHHHHHHHTTEEEEEEEEEE----HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHH
T ss_pred             hCCCCccHHHHHHHHHHCCCEEEEEcCCc----HHHHHHHHHHcCCCeEEEeeeEEECCEEcCCcccCccCCccHHHHHH
Confidence            35677999999999999999999999998    555666778888865432211 1110 000     0001112 4455


Q ss_pred             HHHHHcCCc--EEEEEcCCcccccccc-cCCc
Q 025360          214 KQLLEEGYR--IWGNIGDQWSDLQGEC-TGNR  242 (254)
Q Consensus       214 ~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r  242 (254)
                      ..++..|..  .+++|||+.+|+.++. +|..
T Consensus       150 ~~~~~lgi~~~~~~~iGD~~~Di~~~~~ag~~  181 (211)
T 1l7m_A          150 KIAKIEGINLEDTVAVGDGANDISMFKKAGLK  181 (211)
T ss_dssp             HHHHHHTCCGGGEEEEECSGGGHHHHHHCSEE
T ss_pred             HHHHHcCCCHHHEEEEecChhHHHHHHHCCCE
Confidence            555666764  4999999999999887 5654

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.24  E-value=5.6e-12  Score=103.60  Aligned_cols=116  Identities=17%  Similarity=0.214  Sum_probs=78.7

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++..++....                .......+...++++.|+++|++++++|||+    +..+..
T Consensus         8 ik~i~~DlDGTL~~~~~~~~~~~----------------~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~----~~~~~~   67 (180)
T 1k1e_A            8 IKFVITDVDGVLTDGQLHYDANG----------------EAIKSFHVRDGLGIKMLMDADIQVAVLSGRD----SPILRR   67 (180)
T ss_dssp             CCEEEEECTTTTSCSEEEEETTE----------------EEEEEEEHHHHHHHHHHHHTTCEEEEEESCC----CHHHHH
T ss_pred             CeEEEEeCCCCcCCCCeeeccCc----------------ceeeeeccchHHHHHHHHHCCCeEEEEeCCC----cHHHHH
Confidence            67999999999998753322100                0001234567799999999999999999999    667778


Q ss_pred             HHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          181 NLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       181 ~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      .++++|+..++    ..    .||.   ...++..++..|.  ..+++|||+.+|+.++. +|.. +.+.|
T Consensus        68 ~~~~lgl~~~~----~~----~k~k---~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~-~~~~~  126 (180)
T 1k1e_A           68 RIADLGIKLFF----LG----KLEK---ETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTS-FAVAD  126 (180)
T ss_dssp             HHHHHTCCEEE----ES----CSCH---HHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEE-EECTT
T ss_pred             HHHHcCCceee----cC----CCCc---HHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCe-EEeCC
Confidence            88999997532    11    2221   2333444555565  45999999999999987 5543 33433

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=99.24  E-value=2.2e-11  Score=101.28  Aligned_cols=99  Identities=14%  Similarity=0.120  Sum_probs=74.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCC-CCC--CCCcccHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAA-DKG--KNAVTYKSEIRKQLL  217 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~--kp~~~yK~~~r~~l~  217 (254)
                      ...++|++.++++.|+.   +++++|+..    +......|+++|+..++ +.+...+. ..+  ||.+   ...+..++
T Consensus        85 ~~~~~~~~~~~l~~l~~---~~~i~s~~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~kpk~---~~~~~~~~  154 (229)
T 2fdr_A           85 DVKIIDGVKFALSRLTT---PRCICSNSS----SHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKP---DIFLHGAA  154 (229)
T ss_dssp             HCCBCTTHHHHHHHCCS---CEEEEESSC----HHHHHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSS---HHHHHHHH
T ss_pred             CCccCcCHHHHHHHhCC---CEEEEECCC----hhHHHHHHHhCChHHhccceEEeccccccCCCCcCH---HHHHHHHH
Confidence            35678999999888764   899999998    67777889999998776 66666544 445  5533   34444566


Q ss_pred             HcCCc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          218 EEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       218 ~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                      ..|..  .+++|||+.+|+.++. +|..++.+.+..
T Consensus       155 ~l~~~~~~~i~iGD~~~Di~~a~~aG~~~i~~~~~~  190 (229)
T 2fdr_A          155 QFGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGAS  190 (229)
T ss_dssp             HHTCCGGGEEEEESSHHHHHHHHHTTCEEEEECCST
T ss_pred             HcCCChhHeEEEcCCHHHHHHHHHCCCEEEEEecCC
Confidence            66654  5999999999999987 788888886653

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.24  E-value=3.9e-12  Score=106.76  Aligned_cols=118  Identities=14%  Similarity=0.121  Sum_probs=78.2

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.++|+||+||||+++..++....-..                ....+.....++.|+++|++++++||++    +..+.
T Consensus        24 ~ik~vifD~DGtL~d~~~~~~~~~~~~----------------~~~~~~d~~~l~~L~~~G~~~~ivT~~~----~~~~~   83 (195)
T 3n07_A           24 QIKLLICDVDGVFSDGLIYMGNQGEEL----------------KTFHTRDGYGVKALMNAGIEIAIITGRR----SQIVE   83 (195)
T ss_dssp             TCCEEEECSTTTTSCSCCEECTTSCEE----------------CCCCTTHHHHHHHHHHTTCEEEEECSSC----CHHHH
T ss_pred             CCCEEEEcCCCCcCCCcEEEccCchhh----------------heeecccHHHHHHHHHCCCEEEEEECcC----HHHHH
Confidence            478999999999999754443211000                0111122235899999999999999999    67888


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCC
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      ..++++|+..++.    .    .||   -...++..++..|.  ..+++|||+.+|+.++....-.+...|
T Consensus        84 ~~l~~lgi~~~~~----~----~k~---k~~~~~~~~~~~~~~~~~~~~vGD~~nDi~~~~~ag~~va~~n  143 (195)
T 3n07_A           84 NRMKALGISLIYQ----G----QDD---KVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKVALRVCVAD  143 (195)
T ss_dssp             HHHHHTTCCEEEC----S----CSS---HHHHHHHHHHHHCCCGGGEEEEESSGGGHHHHTTSSEEEECTT
T ss_pred             HHHHHcCCcEEee----C----CCC---cHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHCCCEEEECC
Confidence            8999999975321    1    122   12344455566665  359999999999999884334455444

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=99.21  E-value=7.7e-11  Score=102.64  Aligned_cols=96  Identities=10%  Similarity=0.056  Sum_probs=68.8

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC--C---------CCCCCcEEEecCCCCCCCCcccHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ--G---------FVGYERLIMRTAADKGKNAVTYKS  210 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~--G---------~~~~~~lilr~~~~~~kp~~~yK~  210 (254)
                      ..+++||+.++|+.    |++++++||.+    +..+...|+..  |         +..++.-++......+||++   .
T Consensus       123 ~~~~~pgv~e~L~~----g~~l~i~Tn~~----~~~~~~~l~~~~~g~~~~~~~l~l~~~~~~~f~~~~~g~KP~p---~  191 (253)
T 2g80_A          123 KAPVYADAIDFIKR----KKRVFIYSSGS----VKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGKKTET---Q  191 (253)
T ss_dssp             CBCCCHHHHHHHHH----CSCEEEECSSC----HHHHHHHHHSBCCTTCTTSCCBCCGGGCCEEECHHHHCCTTCH---H
T ss_pred             cCCCCCCHHHHHHc----CCEEEEEeCCC----HHHHHHHHHhhcccccccccccchHhhcceEEeeeccCCCCCH---H
Confidence            35789999999988    99999999999    77777788876  5         44333333322111246654   3


Q ss_pred             HHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          211 EIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       211 ~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..+..+++.|..  .|++|||+..|+.+|+ +|++++.+..
T Consensus       192 ~~~~a~~~lg~~p~~~l~vgDs~~di~aA~~aG~~~i~v~~  232 (253)
T 2g80_A          192 SYANILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASR  232 (253)
T ss_dssp             HHHHHHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEEECC
T ss_pred             HHHHHHHHcCCCcccEEEEcCCHHHHHHHHHcCCEEEEEcC
Confidence            333455666654  5999999999999997 7999998854

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=99.21  E-value=1.1e-11  Score=115.36  Aligned_cols=126  Identities=16%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc-------
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE-------  171 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~-------  171 (254)
                      ...++++||+||||+++...        ..|.. .+.+     -..++||+.++|+.|+++|++++++||+++       
T Consensus        56 ~~~k~v~fD~DGTL~~~~~~--------~~~~~-~~~~-----~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~~g~~~  121 (416)
T 3zvl_A           56 PQGKVAAFDLDGTLITTRSG--------KVFPT-SPSD-----WRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKLP  121 (416)
T ss_dssp             CCSSEEEECSBTTTEECSSC--------SSSCS-STTC-----CEESCTTHHHHHHHHHHTTCEEEEEEECHHHHTTSSC
T ss_pred             CCCeEEEEeCCCCccccCCC--------ccCCC-CHHH-----hhhhcccHHHHHHHHHHCCCeEEEEeCCccccCCCCC
Confidence            34789999999999976421        01110 0001     123789999999999999999999999651       


Q ss_pred             -cccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC----C--cEEEEEcCCc------------
Q 025360          172 -ETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG----Y--RIWGNIGDQW------------  231 (254)
Q Consensus       172 -e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G----y--~i~~~IGDq~------------  231 (254)
                       +..+..+...|+.+|+.  ++.++.+++ ..+||.+   ......++..|    .  ..+++|||+.            
T Consensus       122 ~~~~~~~~~~~l~~lgl~--fd~i~~~~~~~~~KP~p---~~~~~a~~~l~~~~~v~~~~~l~VGDs~gr~~~~~~~~~~  196 (416)
T 3zvl_A          122 AEVFKGKVEAVLEKLGVP--FQVLVATHAGLNRKPVS---GMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKK  196 (416)
T ss_dssp             HHHHHHHHHHHHHHHTSC--CEEEEECSSSTTSTTSS---HHHHHHHHHSSTTCCCCGGGCEEECSCSCBCTTSSTTCCS
T ss_pred             HHHHHHHHHHHHHHcCCC--EEEEEECCCCCCCCCCH---HHHHHHHHHhCCCCCCCHHHeEEEECCCCCcccccccccc
Confidence             12233467788999996  455666554 5677765   33334555554    3  3599999997            


Q ss_pred             -----ccccccc-cCCcE
Q 025360          232 -----SDLQGEC-TGNRT  243 (254)
Q Consensus       232 -----sDi~ga~-~g~r~  243 (254)
                           +|+.+|. +|.+.
T Consensus       197 ~d~s~~Di~~A~~aGi~f  214 (416)
T 3zvl_A          197 KDFSCADRLFALNVGLPF  214 (416)
T ss_dssp             CCSCCHHHHHHHHHTCCE
T ss_pred             cCCChhhHHHHHHcCCcc
Confidence                 8999998 56554

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.20  E-value=6.4e-12  Score=104.71  Aligned_cols=117  Identities=18%  Similarity=0.243  Sum_probs=77.5

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.++|+||+||||.++..++....-...              .....++.  .++.|+++|++++++||++    +..+.
T Consensus        18 ~ik~vifD~DGtL~~~~~~~~~~~~~~~--------------~~~~~d~~--~l~~L~~~g~~~~ivTn~~----~~~~~   77 (191)
T 3n1u_A           18 KIKCLICDVDGVLSDGLLHIDNHGNELK--------------SFHVQDGM--GLKLLMAAGIQVAIITTAQ----NAVVD   77 (191)
T ss_dssp             TCSEEEECSTTTTBCSCCEECTTCCEEC--------------CBCHHHHH--HHHHHHHTTCEEEEECSCC----SHHHH
T ss_pred             cCCEEEEeCCCCCCCCceeecCCchhhh--------------hccccChH--HHHHHHHCCCeEEEEeCcC----hHHHH
Confidence            4789999999999997544322110000              01111222  5899999999999999999    77888


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ..|+.+|+..++..      .  ||.   ...++..++..|..  .+++|||+.+|+.++. +|.. +.+.|
T Consensus        78 ~~l~~lgl~~~~~~------~--kpk---~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~-~~~~~  137 (191)
T 3n1u_A           78 HRMEQLGITHYYKG------Q--VDK---RSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLG-VAVSN  137 (191)
T ss_dssp             HHHHHHTCCEEECS------C--SSC---HHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEE-EECTT
T ss_pred             HHHHHcCCccceeC------C--CCh---HHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCE-EEeCC
Confidence            89999999753321      1  221   23444455555653  5999999999999988 4543 44544

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=99.20  E-value=1.1e-11  Score=100.95  Aligned_cols=95  Identities=18%  Similarity=0.069  Sum_probs=64.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-C-CCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-D-KGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~-~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...+.|++.++++.|+++|++++++||..    +..+... +.+|+..++..+...++ . ..+|...-|...   +...
T Consensus        77 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~---l~~l  148 (201)
T 4ap9_A           77 KVNVSPEARELVETLREKGFKVVLISGSF----EEVLEPF-KELGDEFMANRAIFEDGKFQGIRLRFRDKGEF---LKRF  148 (201)
T ss_dssp             GCCCCHHHHHHHHHHHHTTCEEEEEEEEE----TTTSGGG-TTTSSEEEEEEEEEETTEEEEEECCSSCHHHH---HGGG
T ss_pred             hCCCChhHHHHHHHHHHCCCeEEEEeCCc----HHHHHHH-HHcCchhheeeEEeeCCceECCcCCccCHHHH---HHhc
Confidence            45889999999999999999999999988    3334445 67788765433332222 1 122223334443   3333


Q ss_pred             CCcEEEEEcCCcccccccc-cCCcEE
Q 025360          220 GYRIWGNIGDQWSDLQGEC-TGNRTF  244 (254)
Q Consensus       220 Gy~i~~~IGDq~sDi~ga~-~g~r~f  244 (254)
                      ....+++|||+.+|+.++. +|..+.
T Consensus       149 ~~~~~i~iGD~~~Di~~~~~ag~~v~  174 (201)
T 4ap9_A          149 RDGFILAMGDGYADAKMFERADMGIA  174 (201)
T ss_dssp             TTSCEEEEECTTCCHHHHHHCSEEEE
T ss_pred             CcCcEEEEeCCHHHHHHHHhCCceEE
Confidence            5567999999999999998 676543

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=99.18  E-value=5.3e-11  Score=102.39  Aligned_cols=88  Identities=19%  Similarity=0.238  Sum_probs=65.3

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcE
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRI  223 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i  223 (254)
                      ++.||+.++++.|+++|++++++||++    +..+...++.+|+..++..++..          -|....+.+.+ .+ .
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~----~~~~~~~~~~~gl~~~f~~~~~~----------~k~~~~k~~~~-~~-~  207 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDN----RFVAKWVAEELGLDDYFAEVLPH----------EKAEKVKEVQQ-KY-V  207 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHHTCSEEECSCCGG----------GHHHHHHHHHT-TS-C
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHcCChhHhHhcCHH----------HHHHHHHHHHh-cC-C
Confidence            678999999999999999999999999    77888899999998665433322          13333333333 22 5


Q ss_pred             EEEEcCCcccccccc-cCCcEEEeCC
Q 025360          224 WGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       224 ~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      +++|||+.+|+.++. +| -.+...|
T Consensus       208 ~~~vGD~~nDi~~~~~Ag-~~va~~~  232 (280)
T 3skx_A          208 TAMVGDGVNDAPALAQAD-VGIAIGA  232 (280)
T ss_dssp             EEEEECTTTTHHHHHHSS-EEEECSC
T ss_pred             EEEEeCCchhHHHHHhCC-ceEEecC
Confidence            689999999999998 45 3555444

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.14  E-value=4e-10  Score=104.27  Aligned_cols=137  Identities=13%  Similarity=0.035  Sum_probs=89.8

Q ss_pred             CCCceEEEecCCccccchhhhh-hhccC---------------CC--------------CCChHHHHHHHHhCCCCCchH
Q 025360           99 DGMDAWILDVDDTCISNVYYYK-GKRYG---------------CD--------------PYDPAGFRAWALKGGCPAIPG  148 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~-~~~~g---------------~~--------------~~~~~~~~~~~~~~~~~~~pg  148 (254)
                      ..+++|+||+||||+++..... ...+|               ..              ....+.+.++..  ..++.||
T Consensus       183 ~~~k~viFD~DgTLi~~~~~~~la~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~~pg  260 (415)
T 3p96_A          183 RAKRLIVFDVDSTLVQGEVIEMLAAKAGAEGQVAAITDAAMRGELDFAQSLQQRVATLAGLPATVIDEVAG--QLELMPG  260 (415)
T ss_dssp             TCCCEEEECTBTTTBSSCHHHHHHHHTTCHHHHHHHHHHHHTTCSCHHHHHHHHHHTTTTCBTHHHHHHHH--HCCBCTT
T ss_pred             cCCcEEEEcCcccCcCCchHHHHHHHcCCcHHHHHHHHHHhcCCcCHHHHHHHHHHHhcCCCHHHHHHHHH--hCccCcc
Confidence            4578999999999999653110 00111               10              112223334333  3589999


Q ss_pred             HHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEE-------ecC----CCCCCCCcccHHHHHHHHH
Q 025360          149 VLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIM-------RTA----ADKGKNAVTYKSEIRKQLL  217 (254)
Q Consensus       149 ~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lil-------r~~----~~~~kp~~~yK~~~r~~l~  217 (254)
                      +.++++.|+++|++++++||..    +..+...++.+|+..++...+       .+.    ...+||   -....+..++
T Consensus       261 ~~e~l~~Lk~~G~~~~ivS~~~----~~~~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kp---k~~~~~~~~~  333 (415)
T 3p96_A          261 ARTTLRTLRRLGYACGVVSGGF----RRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAG---KATALREFAQ  333 (415)
T ss_dssp             HHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHTTCSEEEEECEEEETTEEEEEECSSCCCHHH---HHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCEEEEEcCCc----HHHHHHHHHHcCccceeeeeEEEeCCEEEeeEccCCCCCcc---hHHHHHHHHH
Confidence            9999999999999999999998    788889999999976543211       111    111222   1233444556


Q ss_pred             HcCCc--EEEEEcCCcccccccc-cCCcEE
Q 025360          218 EEGYR--IWGNIGDQWSDLQGEC-TGNRTF  244 (254)
Q Consensus       218 ~~Gy~--i~~~IGDq~sDi~ga~-~g~r~f  244 (254)
                      +.|..  .+++|||+.+|+.++. +|..+.
T Consensus       334 ~~gi~~~~~i~vGD~~~Di~~a~~aG~~va  363 (415)
T 3p96_A          334 RAGVPMAQTVAVGDGANDIDMLAAAGLGIA  363 (415)
T ss_dssp             HHTCCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred             HcCcChhhEEEEECCHHHHHHHHHCCCeEE
Confidence            66653  5999999999999988 565443

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=99.13  E-value=5.5e-11  Score=98.37  Aligned_cols=113  Identities=17%  Similarity=0.145  Sum_probs=74.9

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.++|+||+||||+++..++....   ...             ......-..+++.|+++|++++++||++    +..+.
T Consensus        25 ~ik~vifD~DGTL~~~~~~~~~~~---~~~-------------~~~~~~d~~~l~~L~~~g~~v~ivT~~~----~~~~~   84 (188)
T 2r8e_A           25 NIRLLILDVDGVLSDGLIYMGNNG---EEL-------------KAFNVRDGYGIRCALTSDIEVAIITGRK----AKLVE   84 (188)
T ss_dssp             TCSEEEECCCCCCBCSEEEEETTS---CEE-------------EEEEHHHHHHHHHHHTTTCEEEEECSSC----CHHHH
T ss_pred             cCCEEEEeCCCCcCCCCEEecCCC---cEE-------------EEeecccHHHHHHHHHCCCeEEEEeCCC----hHHHH
Confidence            478999999999998754432210   000             0000111238999999999999999999    66777


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc-cCCcE
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRT  243 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~  243 (254)
                      ..++++|+..++    ..    .||.   ...+++.++..|.  ..+++|||+.+|+.++. +|..+
T Consensus        85 ~~l~~lgl~~~~----~~----~kpk---~~~~~~~~~~~g~~~~~~~~iGD~~~Di~~a~~ag~~~  140 (188)
T 2r8e_A           85 DRCATLGITHLY----QG----QSNK---LIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSV  140 (188)
T ss_dssp             HHHHHHTCCEEE----CS----CSCS---HHHHHHHHHHHTCCGGGEEEEESSGGGHHHHTTSSEEE
T ss_pred             HHHHHcCCceee----cC----CCCC---HHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCEE
Confidence            888889987432    11    2332   2444445555564  45999999999999997 45433

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.08  E-value=1.2e-09  Score=92.84  Aligned_cols=60  Identities=20%  Similarity=0.289  Sum_probs=44.6

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++|+||+||||+++.                           ..++++.+.++.|+++|++++++||+. ........
T Consensus         6 ~ik~i~fDlDGTLld~~---------------------------~~~~~~~~ai~~l~~~G~~~~~~t~~~-~~~~~~~~   57 (259)
T 2ho4_A            6 ALKAVLVDLNGTLHIED---------------------------AAVPGAQEALKRLRATSVMVRFVTNTT-KETKKDLL   57 (259)
T ss_dssp             CCCEEEEESSSSSCC------------------------------CCTTHHHHHHHHHTSSCEEEEEECCS-SCCHHHHH
T ss_pred             hCCEEEEeCcCcEEeCC---------------------------EeCcCHHHHHHHHHHCCCeEEEEeCCC-CcCHHHHH
Confidence            46899999999999863                           244678888999999999999999877 54455555


Q ss_pred             HHHHhCCC
Q 025360          180 DNLHNQGF  187 (254)
Q Consensus       180 ~~L~~~G~  187 (254)
                      +.|...|+
T Consensus        58 ~~l~~~g~   65 (259)
T 2ho4_A           58 ERLKKLEF   65 (259)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHcCC
Confidence            55555554

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=98.99  E-value=2.3e-09  Score=92.08  Aligned_cols=60  Identities=20%  Similarity=0.302  Sum_probs=46.5

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++|+||+||||+++.                           ..++++.+.++.++++|++++++|||. ...+....
T Consensus         4 ~~k~v~fDlDGTL~~~~---------------------------~~~~~~~~~l~~l~~~g~~~~~~t~~~-~~~~~~~~   55 (264)
T 1yv9_A            4 DYQGYLIDLDGTIYLGK---------------------------EPIPAGKRFVERLQEKDLPFLFVTNNT-TKSPETVA   55 (264)
T ss_dssp             SCCEEEECCBTTTEETT---------------------------EECHHHHHHHHHHHHTTCCEEEEECCC-SSCHHHHH
T ss_pred             cCCEEEEeCCCeEEeCC---------------------------EECcCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHH
Confidence            36899999999999862                           245889999999999999999999998 55554444


Q ss_pred             HHHHh-CCC
Q 025360          180 DNLHN-QGF  187 (254)
Q Consensus       180 ~~L~~-~G~  187 (254)
                      +.|.+ .|+
T Consensus        56 ~~l~~~~g~   64 (264)
T 1yv9_A           56 QRLANEFDI   64 (264)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHHHhcCC
Confidence            44444 444

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=98.98  E-value=9.7e-10  Score=87.97  Aligned_cols=65  Identities=17%  Similarity=0.161  Sum_probs=55.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      +++|+|||||||+++.            +.          .-..+.|++.+.++.|+++|+.++++|||+ ......+..
T Consensus         3 ~k~i~~DlDGTL~~~~------------~~----------~i~~~~~~~~~al~~l~~~G~~iii~TgR~-~~~~~~~~~   59 (142)
T 2obb_A            3 AMTIAVDFDGTIVEHR------------YP----------RIGEEIPFAVETLKLLQQEKHRLILWSVRE-GELLDEAIE   59 (142)
T ss_dssp             CCEEEECCBTTTBCSC------------TT----------SCCCBCTTHHHHHHHHHHTTCEEEECCSCC-HHHHHHHHH
T ss_pred             CeEEEEECcCCCCCCC------------Cc----------cccccCHHHHHHHHHHHHCCCEEEEEeCCC-cccHHHHHH
Confidence            6799999999999852            00          013467899999999999999999999999 777888999


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      ||+++|++
T Consensus        60 ~l~~~gi~   67 (142)
T 2obb_A           60 WCRARGLE   67 (142)
T ss_dssp             HHHTTTCC
T ss_pred             HHHHcCCC
Confidence            99999997

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=98.97  E-value=2.1e-09  Score=92.49  Aligned_cols=61  Identities=25%  Similarity=0.348  Sum_probs=46.4

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++|+||+||||+++.                           ...|++.+.++.|+++|++++++|||+ ...+....
T Consensus        16 ~~~~v~~DlDGTLl~~~---------------------------~~~~~~~~~l~~l~~~G~~~~~aTn~~-gr~~~~~~   67 (271)
T 1vjr_A           16 KIELFILDMDGTFYLDD---------------------------SLLPGSLEFLETLKEKNKRFVFFTNNS-SLGAQDYV   67 (271)
T ss_dssp             GCCEEEECCBTTTEETT---------------------------EECTTHHHHHHHHHHTTCEEEEEESCT-TSCHHHHH
T ss_pred             CCCEEEEcCcCcEEeCC---------------------------EECcCHHHHHHHHHHcCCeEEEEECCC-CCCHHHHH
Confidence            47899999999999862                           255788999999999999999999665 33355555


Q ss_pred             HHHHhCCCC
Q 025360          180 DNLHNQGFV  188 (254)
Q Consensus       180 ~~L~~~G~~  188 (254)
                      +.|+..|++
T Consensus        68 ~~~~~lg~~   76 (271)
T 1vjr_A           68 RKLRNMGVD   76 (271)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCC
Confidence            555555553

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=98.91  E-value=1.4e-09  Score=89.17  Aligned_cols=117  Identities=15%  Similarity=0.162  Sum_probs=72.0

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      .+.+.|+||+||||++..-++...+.--..|+              ...+  ..++.|+++|++++++||+.      .+
T Consensus         7 ~~ikliv~D~DGtL~d~~~~~~~~g~~~~~f~--------------~~D~--~~L~~Lk~~Gi~~~I~Tg~~------~~   64 (168)
T 3ewi_A            7 KEIKLLVCNIDGCLTNGHIYVSGDQKEIISYD--------------VKDA--IGISLLKKSGIEVRLISERA------CS   64 (168)
T ss_dssp             CCCCEEEEECCCCCSCSCCBCCSSCCCEEEEE--------------HHHH--HHHHHHHHTTCEEEEECSSC------CC
T ss_pred             hcCcEEEEeCccceECCcEEEcCCCCEEEEEe--------------cCcH--HHHHHHHHCCCEEEEEeCcH------HH
Confidence            35789999999999997533321100000010              0011  26899999999999999993      23


Q ss_pred             HHHHH--hCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCCC
Q 025360          179 RDNLH--NQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       179 ~~~L~--~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPNp  249 (254)
                      ...|+  .+|+. +   + .+.  ..|     ...++..++..|..  .+++|||+.+|+..+....-.+..+|.
T Consensus        65 ~~~l~~l~lgi~-~---~-~g~--~~K-----~~~l~~~~~~~gi~~~~~~~vGD~~nDi~~~~~ag~~~a~~na  127 (168)
T 3ewi_A           65 KQTLSALKLDCK-T---E-VSV--SDK-----LATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVPADA  127 (168)
T ss_dssp             HHHHHTTCCCCC-E---E-CSC--SCH-----HHHHHHHHHHTTCCGGGEEEECCSGGGHHHHHHSSEEEECTTC
T ss_pred             HHHHHHhCCCcE-E---E-ECC--CCh-----HHHHHHHHHHcCcChHHEEEEeCCHhHHHHHHHCCCEEEeCCh
Confidence            34566  55664 2   2 221  122     24445555666654  599999999999998843355666664

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=98.90  E-value=1.1e-09  Score=92.08  Aligned_cols=132  Identities=11%  Similarity=-0.009  Sum_probs=86.2

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCC-hHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYD-PAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQV  177 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~  177 (254)
                      .+++.+|+|+||||+++.....   .+ ..|. +-..+.-...-.....||+.++|++|++. ++++++|+..    +..
T Consensus        26 ~~k~~LVLDLD~TLvhs~~~~~---~~-~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~-~~i~I~Tss~----~~~   96 (195)
T 2hhl_A           26 YGKKCVVIDLDETLVHSSFKPI---SN-ADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL-FECVLFTASL----AKY   96 (195)
T ss_dssp             TTCCEEEECCBTTTEEEESSCC---TT-CSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSC----HHH
T ss_pred             CCCeEEEEccccceEcccccCC---CC-ccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC-CeEEEEcCCC----HHH
Confidence            5689999999999998741100   00 0000 00000000000245789999999999998 9999999999    788


Q ss_pred             HHHHHHhCCCCCCCcEEEecCCC-CCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEE
Q 025360          178 TRDNLHNQGFVGYERLIMRTAAD-KGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFK  245 (254)
Q Consensus       178 T~~~L~~~G~~~~~~lilr~~~~-~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fk  245 (254)
                      +...|+.+|...++..++..++. ..| ....|     .+...|..  .|++|||+..++.++. +|..+..
T Consensus        97 a~~vl~~ld~~~~f~~~l~rd~~~~~k-~~~lK-----~L~~Lg~~~~~~vivDDs~~~~~~~~~ngi~i~~  162 (195)
T 2hhl_A           97 ADPVADLLDRWGVFRARLFRESCVFHR-GNYVK-----DLSRLGRELSKVIIVDNSPASYIFHPENAVPVQS  162 (195)
T ss_dssp             HHHHHHHHCCSSCEEEEECGGGCEEET-TEEEC-----CGGGSSSCGGGEEEEESCGGGGTTCGGGEEECCC
T ss_pred             HHHHHHHhCCcccEEEEEEcccceecC-Cceee-----eHhHhCCChhHEEEEECCHHHhhhCccCccEEee
Confidence            88888888988877766665542 222 22222     35556654  4999999999999877 5554433

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=98.90  E-value=6.8e-09  Score=91.66  Aligned_cols=60  Identities=18%  Similarity=0.290  Sum_probs=47.6

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||+++.                           .++|++.+.++.|+++|++++++|||+ ...+.....
T Consensus        21 ~k~i~~D~DGTL~~~~---------------------------~~~~~~~~~l~~l~~~g~~~~~~Tn~~-~~~~~~~~~   72 (306)
T 2oyc_A           21 AQGVLFDCDGVLWNGE---------------------------RAVPGAPELLERLARAGKAALFVSNNS-RRARPELAL   72 (306)
T ss_dssp             CSEEEECSBTTTEETT---------------------------EECTTHHHHHHHHHHTTCEEEEEECCC-SSCHHHHHH
T ss_pred             CCEEEECCCCcEecCC---------------------------ccCcCHHHHHHHHHHCCCeEEEEECCC-CCCHHHHHH
Confidence            6789999999999752                           367889999999999999999999866 444666656


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .|+++|++
T Consensus        73 ~~~~~g~~   80 (306)
T 2oyc_A           73 RFARLGFG   80 (306)
T ss_dssp             HHHHTTCC
T ss_pred             HHHhcCCC
Confidence            66666554

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=98.88  E-value=3.5e-09  Score=94.88  Aligned_cols=97  Identities=13%  Similarity=0.022  Sum_probs=69.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEe-----------cCCCCCCCCcccHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMR-----------TAADKGKNAVTYKS  210 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr-----------~~~~~~kp~~~yK~  210 (254)
                      ..++.||+.++++.|+++|++++++||..    +..+...++++|+..++...+.           +....+||   -..
T Consensus       176 ~~~~~pg~~~~l~~L~~~g~~~~ivS~~~----~~~~~~~~~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kp---k~~  248 (335)
T 3n28_A          176 TLPLMPELPELVATLHAFGWKVAIASGGF----TYFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQT---KAD  248 (335)
T ss_dssp             TCCCCTTHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEESCCCCHHH---HHH
T ss_pred             hCCcCcCHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHHHHcCCCeEEeeeeEeeCCeeeeeecccccChhh---hHH
Confidence            46799999999999999999999999988    6777888889999765432221           11112222   123


Q ss_pred             HHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEE
Q 025360          211 EIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFK  245 (254)
Q Consensus       211 ~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fk  245 (254)
                      .+++.++..|..  .+++|||+.+|+.++. +|..+..
T Consensus       249 ~~~~~~~~lgi~~~~~v~vGDs~nDi~~a~~aG~~va~  286 (335)
T 3n28_A          249 ILLTLAQQYDVEIHNTVAVGDGANDLVMMAAAGLGVAY  286 (335)
T ss_dssp             HHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEEE
T ss_pred             HHHHHHHHcCCChhhEEEEeCCHHHHHHHHHCCCeEEe
Confidence            444455666664  5999999999999988 6654443

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=98.87  E-value=1e-08  Score=87.38  Aligned_cols=59  Identities=19%  Similarity=0.106  Sum_probs=48.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||++..                          ...-|.+.+.+++|+++|++++++|||+    ......
T Consensus         5 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~~l~~l~~~g~~~~i~TGr~----~~~~~~   54 (227)
T 1l6r_A            5 IRLAAIDVDGNLTDRD--------------------------RLISTKAIESIRSAEKKGLTVSLLSGNV----IPVVYA   54 (227)
T ss_dssp             CCEEEEEHHHHSBCTT--------------------------SCBCHHHHHHHHHHHHTTCEEEEECSSC----HHHHHH
T ss_pred             eEEEEEECCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEECCCC----cHHHHH
Confidence            3789999999999852                          2355788999999999999999999999    666677


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++++|++.
T Consensus        55 ~~~~l~~~~   63 (227)
T 1l6r_A           55 LKIFLGING   63 (227)
T ss_dssp             HHHHHTCCS
T ss_pred             HHHHhCCCC
Confidence            777778764

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=98.85  E-value=1.7e-09  Score=99.76  Aligned_cols=100  Identities=22%  Similarity=0.186  Sum_probs=78.9

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCCC------------CCCCCccc
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAAD------------KGKNAVTY  208 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~~------------~~kp~~~y  208 (254)
                      .+++||+.++|+.|+++|++++++||++    +..+...|+++|+..+++  .++.+++.            .+||++..
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~----~~~~~~~L~~lgL~~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP~P~~  289 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRP----YTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNPFS  289 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCc----HHHHHHHHHHcCChHhcCCCEEEecccccccccccccccCCCCCCHHH
Confidence            4789999999999999999999999999    788888999999988776  66665542            26776522


Q ss_pred             HHHHHHHHHHcC----------------CcEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          209 KSEIRKQLLEEG----------------YRIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       209 K~~~r~~l~~~G----------------y~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                         ....+...|                ...|++|||+.+|+.+|+ +|++++.++..
T Consensus       290 ---~~~a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~Di~aAk~AG~~~I~V~~g  344 (384)
T 1qyi_A          290 ---YIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGTLTG  344 (384)
T ss_dssp             ---HHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEESCB
T ss_pred             ---HHHHHHHcCCccccccccccccCCCCcCeEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence               223444444                245999999999999998 89999998764

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=98.83  E-value=4.2e-09  Score=87.23  Aligned_cols=131  Identities=10%  Similarity=-0.030  Sum_probs=84.0

Q ss_pred             CCCCceEEEecCCccccchhhhhhhccCCCCCC-hHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360           98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPYD-PAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      ..+++.+|+|+||||+++.....   .+. .|. +-..+.....-.....||+.++|+.|.+. +++++.|+..    +.
T Consensus        12 ~~~k~~LVLDLD~TLvhs~~~~~---~~~-d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~-~~i~I~T~~~----~~   82 (181)
T 2ght_A           12 DSDKICVVINLDETLVHSSFKPV---NNA-DFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASL----AK   82 (181)
T ss_dssp             GTTSCEEEECCBTTTEEEESSCC---SSC-SEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSC----HH
T ss_pred             cCCCeEEEECCCCCeECCcccCC---CCc-cceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC-CCEEEEcCCC----HH
Confidence            35789999999999998641100   000 000 00000000000246799999999999998 9999999999    77


Q ss_pred             HHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCc
Q 025360          177 VTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNR  242 (254)
Q Consensus       177 ~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r  242 (254)
                      .+...|+.+|...++..++..++.........|     .+...|..  .|++|||+..++.++. +|..
T Consensus        83 ~a~~vl~~ld~~~~f~~~~~rd~~~~~k~~~~k-----~L~~Lg~~~~~~vivdDs~~~~~~~~~ngi~  146 (181)
T 2ght_A           83 YADPVADLLDKWGAFRARLFRESCVFHRGNYVK-----DLSRLGRDLRRVLILDNSPASYVFHPDNAVP  146 (181)
T ss_dssp             HHHHHHHHHCTTCCEEEEECGGGSEEETTEEEC-----CGGGTCSCGGGEEEECSCGGGGTTCTTSBCC
T ss_pred             HHHHHHHHHCCCCcEEEEEeccCceecCCcEec-----cHHHhCCCcceEEEEeCCHHHhccCcCCEeE
Confidence            778888888887776666655442211122222     34555654  4999999999999876 5544

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=98.83  E-value=1.8e-08  Score=78.38  Aligned_cols=73  Identities=16%  Similarity=0.278  Sum_probs=55.1

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc------
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF------  174 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~------  174 (254)
                      .++|+|||||||+++...         .|           ....+.+++.+.++.|+++|++++++|||+ ...      
T Consensus         1 ik~i~~DlDGTL~~~~~~---------~~-----------~~~~~~~~~~~~l~~l~~~Gi~~~iaTGR~-~~~~nG~~~   59 (126)
T 1xpj_A            1 MKKLIVDLDGTLTQANTS---------DY-----------RNVLPRLDVIEQLREYHQLGFEIVISTARN-MRTYEGNVG   59 (126)
T ss_dssp             CCEEEECSTTTTBCCCCS---------CG-----------GGCCBCHHHHHHHHHHHHTTCEEEEEECTT-TTTTTTCHH
T ss_pred             CCEEEEecCCCCCCCCCC---------cc-----------ccCCCCHHHHHHHHHHHhCCCeEEEEeCCC-hhhcccccc
Confidence            368999999999986410         01           013567899999999999999999999998 533      


Q ss_pred             ------HHHHHHHHHhCCCCCCCcEEE
Q 025360          175 ------GQVTRDNLHNQGFVGYERLIM  195 (254)
Q Consensus       175 ------r~~T~~~L~~~G~~~~~~lil  195 (254)
                            ...+.++|++.|++ +..+++
T Consensus        60 ~~~~~~~~~i~~~~~~~~~~-~~~~~~   85 (126)
T 1xpj_A           60 KINIHTLPIITEWLDKHQVP-YDEILV   85 (126)
T ss_dssp             HHHHHTHHHHHHHHHHTTCC-CSEEEE
T ss_pred             ccCHHHHHHHHHHHHHcCCC-EEEEEe
Confidence                  45778899999886 444443

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=98.78  E-value=4.4e-08  Score=83.13  Aligned_cols=63  Identities=25%  Similarity=0.312  Sum_probs=42.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||+++.                    |   ......++..+.++.++++|+++.++|++. .........
T Consensus        12 ~k~i~fDlDGTLl~s~--------------------~---~~~~~~~~~~~a~~~l~~~G~~~~~~t~~~-gr~~~~~~~   67 (271)
T 2x4d_A           12 VRGVLLDISGVLYDSG--------------------A---GGGTAIAGSVEAVARLKRSRLKVRFCTNES-AASRAELVG   67 (271)
T ss_dssp             CCEEEECCBTTTEECC--------------------T---TTCEECTTHHHHHHHHHHSSSEEEEECCCC-SSCHHHHHH
T ss_pred             CCEEEEeCCCeEEecC--------------------C---CCCccCcCHHHHHHHHHHCCCcEEEEECCC-CCCHHHHHH
Confidence            6899999999999862                    0   012355777888899999999999999333 222444444


Q ss_pred             HHHhCCC
Q 025360          181 NLHNQGF  187 (254)
Q Consensus       181 ~L~~~G~  187 (254)
                      .|.+.|+
T Consensus        68 ~l~~~g~   74 (271)
T 2x4d_A           68 QLQRLGF   74 (271)
T ss_dssp             HHHHTTC
T ss_pred             HHHHCCC
Confidence            4444444

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=98.76  E-value=8.8e-09  Score=90.42  Aligned_cols=110  Identities=15%  Similarity=0.087  Sum_probs=80.9

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      .+...+.||+|++.+...                       ....+++||+.++++.|+++|++++++||++    +..+
T Consensus       141 ~g~~~i~~~~d~~~~~~~-----------------------~~~~~~~~g~~~~l~~L~~~g~~~~i~T~~~----~~~~  193 (287)
T 3a1c_A          141 EAKTAVIVARNGRVEGII-----------------------AVSDTLKESAKPAVQELKRMGIKVGMITGDN----WRSA  193 (287)
T ss_dssp             TTCEEEEEEETTEEEEEE-----------------------EEECCBCTTHHHHHHHHHHTTCEEEEECSSC----HHHH
T ss_pred             CCCeEEEEEECCEEEEEE-----------------------EeccccchhHHHHHHHHHHCCCeEEEEeCCC----HHHH
Confidence            356789999999877542                       0136799999999999999999999999999    7778


Q ss_pred             HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          179 RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       179 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      ...|+.+|+..++..++        |  .-|....+.+...  ..|++|||+.+|+.++. +|.. +.+.|
T Consensus       194 ~~~l~~~gl~~~f~~i~--------~--~~K~~~~~~l~~~--~~~~~vGDs~~Di~~a~~ag~~-v~~~~  251 (287)
T 3a1c_A          194 EAISRELNLDLVIAEVL--------P--HQKSEEVKKLQAK--EVVAFVGDGINDAPALAQADLG-IAVGS  251 (287)
T ss_dssp             HHHHHHHTCSEEECSCC--------T--TCHHHHHHHHTTT--CCEEEEECTTTCHHHHHHSSEE-EEECC
T ss_pred             HHHHHHhCCceeeeecC--------h--HHHHHHHHHHhcC--CeEEEEECCHHHHHHHHHCCee-EEeCC
Confidence            88899999976543221        1  1233333333333  67999999999999988 6654 55544

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=98.74  E-value=1.5e-08  Score=88.46  Aligned_cols=102  Identities=14%  Similarity=-0.028  Sum_probs=66.2

Q ss_pred             CCchHHHHHHHHHHHC-CCeEEEEeCCCccc------------------cHHHHHHHHHhCCCCCCCcEE----------
Q 025360          144 PAIPGVLVLFNKLIES-GLKVILVTGRDEET------------------FGQVTRDNLHNQGFVGYERLI----------  194 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~-G~~i~~vTgR~~e~------------------~r~~T~~~L~~~G~~~~~~li----------  194 (254)
                      .+.+++.++++.++++ |+++.+.|+.. ..                  ....+.+.|+..|+..+....          
T Consensus       122 ~~~~~v~e~l~~l~~~~g~~l~~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~  200 (289)
T 3gyg_A          122 FSKEKVEKLVKQLHENHNILLNPQTQLG-KSRYKHNFYYQEQDEINDKKNLLAIEKICEEYGVSVNINRCNPLAGDPEDS  200 (289)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCEEGGGTC-GGGTTCCEEEECCCHHHHHHHHHHHHHHHHHHTEEEEEEECCGGGTCCTTE
T ss_pred             CCHHHHHHHHHHHHhhhCceeeeccccc-ccceEEEEEEeccccccchHHHHHHHHHHHHcCCCEEEEEccccccCCCCc
Confidence            6778999999999998 99999999772 10                  245667788888886332111          


Q ss_pred             EecC-CCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCCC
Q 025360          195 MRTA-ADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       195 lr~~-~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPNp  249 (254)
                      ...+ ...+++   -...++..++..|..  .+++|||+.+|+..+......+...|.
T Consensus       201 ~~~~~~~~~~~---k~~~~~~~~~~~~~~~~~~~~~GDs~~D~~~~~~ag~~~~~~~~  255 (289)
T 3gyg_A          201 YDVDFIPIGTG---KNEIVTFMLEKYNLNTERAIAFGDSGNDVRMLQTVGNGYLLKNA  255 (289)
T ss_dssp             EEEEEEESCCS---HHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEECTTC
T ss_pred             eEEEEEeCCCC---HHHHHHHHHHHcCCChhhEEEEcCCHHHHHHHHhCCcEEEECCc
Confidence            0000 011221   124455566666764  499999999999998844356665553

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=98.73  E-value=2.3e-08  Score=85.89  Aligned_cols=60  Identities=25%  Similarity=0.364  Sum_probs=52.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+|||||||++..                           ..+|++.+.++.|+++|++++++|||+ ........+
T Consensus         8 ~kli~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~Gi~v~l~Tgr~-~r~~~~~~~   59 (268)
T 3qgm_A            8 KKGYIIDIDGVIGKSV---------------------------TPIPEGVEGVKKLKELGKKIIFVSNNS-TRSRRILLE   59 (268)
T ss_dssp             CSEEEEECBTTTEETT---------------------------EECHHHHHHHHHHHHTTCEEEEEECCS-SSCHHHHHH
T ss_pred             CCEEEEcCcCcEECCC---------------------------EeCcCHHHHHHHHHHcCCeEEEEeCcC-CCCHHHHHH
Confidence            6899999999999752                           267899999999999999999999976 555788888


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .|+.+|++
T Consensus        60 ~l~~lg~~   67 (268)
T 3qgm_A           60 RLRSFGLE   67 (268)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHCCCC
Confidence            89999986

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=98.63  E-value=5e-08  Score=84.05  Aligned_cols=61  Identities=20%  Similarity=0.312  Sum_probs=52.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||++..                           ..+|++.+.+++|+++|++++++|||+ .........
T Consensus         5 ~kli~~DlDGTLl~~~---------------------------~~i~~~~eal~~l~~~G~~vvl~Tn~~-gr~~~~~~~   56 (264)
T 3epr_A            5 YKGYLIDLDGTIYKGK---------------------------SRIPAGERFIERLQEKGIPYMLVTNNT-TRTPESVQE   56 (264)
T ss_dssp             CCEEEECCBTTTEETT---------------------------EECHHHHHHHHHHHHHTCCEEEEECCC-SSCHHHHHH
T ss_pred             CCEEEEeCCCceEeCC---------------------------EECcCHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHH
Confidence            6899999999999862                           245899999999999999999999776 555788888


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .|+.+|+..
T Consensus        57 ~l~~lg~~~   65 (264)
T 3epr_A           57 MLRGFNVET   65 (264)
T ss_dssp             HHHTTTCCC
T ss_pred             HHHHCCCCC
Confidence            999999863

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=98.06  E-value=4e-09  Score=91.84  Aligned_cols=82  Identities=20%  Similarity=0.204  Sum_probs=61.2

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..+++||+.++++.|+++|++++++||.+    +..+...++++|+..++..++ +.         .|....+.+... .
T Consensus       134 ~~~~~~g~~~~l~~L~~~g~~~~i~T~~~----~~~~~~~~~~~gl~~~f~~~~-p~---------~k~~~~~~l~~~-~  198 (263)
T 2yj3_A          134 SDVPRPNLKDYLEKLKNEGLKIIILSGDK----EDKVKELSKELNIQEYYSNLS-PE---------DKVRIIEKLKQN-G  198 (263)
Confidence            35689999999999999999999999999    667778889999987665443 11         122222223222 2


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      ..+++|||+.+|+.++.
T Consensus       199 ~~~~~VGD~~~D~~aa~  215 (263)
T 2yj3_A          199 NKVLMIGDGVNDAAALA  215 (263)
Confidence            46899999999999887

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=98.62  E-value=4.4e-08  Score=84.19  Aligned_cols=60  Identities=17%  Similarity=0.272  Sum_probs=51.6

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+|||||||++..                           ..+|++.+.+++|+++|++++++|||+ .........
T Consensus         6 ~kli~~DlDGTLl~~~---------------------------~~~~~~~~ai~~l~~~Gi~v~laTgrs-~r~~~~~~~   57 (266)
T 3pdw_A            6 YKGYLIDLDGTMYNGT---------------------------EKIEEACEFVRTLKDRGVPYLFVTNNS-SRTPKQVAD   57 (266)
T ss_dssp             CSEEEEECSSSTTCHH---------------------------HHHHHHHHHHHHHHHTTCCEEEEESCC-SSCHHHHHH
T ss_pred             CCEEEEeCcCceEeCC---------------------------EeCccHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHH
Confidence            6899999999999752                           156789999999999999999999977 655777888


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .|..+|+.
T Consensus        58 ~l~~lg~~   65 (266)
T 3pdw_A           58 KLVSFDIP   65 (266)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            89999985

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=98.61  E-value=3.2e-07  Score=79.18  Aligned_cols=58  Identities=16%  Similarity=0.158  Sum_probs=49.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++.                          ....+.+.+.++.++++|+.++++|||+    ......
T Consensus         5 ~kli~fDlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~~   54 (279)
T 4dw8_A            5 YKLIVLDLDGTLTNSK--------------------------KEISSRNRETLIRIQEQGIRLVLASGRP----TYGIVP   54 (279)
T ss_dssp             CCEEEECCCCCCSCTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEECSSC----HHHHHH
T ss_pred             ceEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCC----hHHHHH
Confidence            5799999999999873                          2355788999999999999999999999    667777


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .+...|++
T Consensus        55 ~~~~l~~~   62 (279)
T 4dw8_A           55 LANELRMN   62 (279)
T ss_dssp             HHHHTTGG
T ss_pred             HHHHhCCC
Confidence            88888874

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=98.55  E-value=9.8e-08  Score=82.26  Aligned_cols=60  Identities=30%  Similarity=0.389  Sum_probs=52.1

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||++..                           .++|++.+.++.|+++|++++++|||+ ...+....+
T Consensus         1 ik~i~~D~DGtL~~~~---------------------------~~~~~~~~~l~~l~~~g~~~~~~T~r~-~~~~~~~~~   52 (263)
T 1zjj_A            1 MVAIIFDMDGVLYRGN---------------------------RAIPGVRELIEFLKERGIPFAFLTNNS-TKTPEMYRE   52 (263)
T ss_dssp             CEEEEEECBTTTEETT---------------------------EECTTHHHHHHHHHHHTCCEEEEESCC-SSCHHHHHH
T ss_pred             CeEEEEeCcCceEeCC---------------------------EeCccHHHHHHHHHHCCCeEEEEeCCC-CCCHHHHHH
Confidence            3689999999999752                           245889999999999999999999999 777788888


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .|+++|++
T Consensus        53 ~l~~lg~~   60 (263)
T 1zjj_A           53 KLLKMGID   60 (263)
T ss_dssp             HHHTTTCC
T ss_pred             HHHHCCCC
Confidence            99989996

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=98.53  E-value=7.3e-08  Score=87.86  Aligned_cols=99  Identities=13%  Similarity=0.076  Sum_probs=73.2

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++++||+||||.+.                           ..++||+.++++.|+++|++++|+||++ ...++...
T Consensus        12 ~~~~~l~D~DGvl~~g---------------------------~~~~p~a~~~l~~l~~~g~~~~~vTNn~-~~~~~~~~   63 (352)
T 3kc2_A           12 KKIAFAFDIDGVLFRG---------------------------KKPIAGASDALKLLNRNKIPYILLTNGG-GFSERART   63 (352)
T ss_dssp             CCEEEEECCBTTTEET---------------------------TEECTTHHHHHHHHHHTTCCEEEECSCC-SSCHHHHH
T ss_pred             cCCEEEEECCCeeEcC---------------------------CeeCcCHHHHHHHHHHCCCEEEEEeCCC-CCCchHHH
Confidence            4789999999999874                           3478999999999999999999999998 76777888


Q ss_pred             HHHH-hCCCCCCCcEEEecCC-C---CCCCCcccH---HHHHHHHHHcCCcEEEE
Q 025360          180 DNLH-NQGFVGYERLIMRTAA-D---KGKNAVTYK---SEIRKQLLEEGYRIWGN  226 (254)
Q Consensus       180 ~~L~-~~G~~~~~~lilr~~~-~---~~kp~~~yK---~~~r~~l~~~Gy~i~~~  226 (254)
                      +.|. .+|++.-.+-++.+.. .   ..+...+|.   ..++..+++.|++.+..
T Consensus        64 ~~l~~~lgi~~~~~~i~ts~~~~~~~~~~~~~v~viG~~~l~~~l~~~G~~~v~~  118 (352)
T 3kc2_A           64 EFISSKLDVDVSPLQIIQSHTPYKSLVNKYSRILAVGTPSVRGVAEGYGFQDVVH  118 (352)
T ss_dssp             HHHHHHHTSCCCGGGEECTTGGGGGGTTTCSEEEEESSTTHHHHHHHHTCSEEEE
T ss_pred             HHHHHhcCCCCChhhEeehHHHHHHHHhcCCEEEEECCHHHHHHHHhCCCeEecc
Confidence            8887 6899753333444321 1   011112222   56788899999998753

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=98.53  E-value=2.2e-07  Score=80.25  Aligned_cols=59  Identities=20%  Similarity=0.263  Sum_probs=42.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++.                          ....+.+.+.++.|+++|++++++|||+    ......
T Consensus         5 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~~   54 (279)
T 3mpo_A            5 IKLIAIDIDGTLLNEK--------------------------NELAQATIDAVQAAKAQGIKVVLCTGRP----LTGVQP   54 (279)
T ss_dssp             CCEEEECC-------------------------------------CHHHHHHHHHHHHTTCEEEEECSSC----HHHHHH
T ss_pred             eEEEEEcCcCCCCCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHH
Confidence            5789999999999874                          2355778899999999999999999999    667778


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .+...|++.
T Consensus        55 ~~~~l~~~~   63 (279)
T 3mpo_A           55 YLDAMDIDG   63 (279)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHHcCCCC
Confidence            888888864

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=98.52  E-value=1.6e-07  Score=81.63  Aligned_cols=61  Identities=18%  Similarity=0.228  Sum_probs=52.9

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..++|+||+||||+++.                           .++|++.+.++.|+++|++++++||+. ...+....
T Consensus        13 ~~k~i~~D~DGtL~~~~---------------------------~~~~~~~~~l~~l~~~g~~~~~~Tn~~-~r~~~~~~   64 (284)
T 2hx1_A           13 KYKCIFFDAFGVLKTYN---------------------------GLLPGIENTFDYLKAQGQDYYIVTNDA-SRSPEQLA   64 (284)
T ss_dssp             GCSEEEECSBTTTEETT---------------------------EECTTHHHHHHHHHHTTCEEEEEECCC-SSCHHHHH
T ss_pred             cCCEEEEcCcCCcCcCC---------------------------eeChhHHHHHHHHHHCCCEEEEEeCCC-CcCHHHHH
Confidence            36899999999999852                           357899999999999999999999966 55578888


Q ss_pred             HHHHhCCCC
Q 025360          180 DNLHNQGFV  188 (254)
Q Consensus       180 ~~L~~~G~~  188 (254)
                      +.|++.|++
T Consensus        65 ~~l~~lg~~   73 (284)
T 2hx1_A           65 DSYHKLGLF   73 (284)
T ss_dssp             HHHHHTTCT
T ss_pred             HHHHHCCcC
Confidence            999999997

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=98.47  E-value=3.1e-07  Score=77.76  Aligned_cols=58  Identities=21%  Similarity=0.165  Sum_probs=46.5

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++.                          ....+.+.+.++.|+++|++++++|||+    ......
T Consensus         3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~v~i~TGR~----~~~~~~   52 (231)
T 1wr8_A            3 IKAISIDIDGTITYPN--------------------------RMIHEKALEAIRRAESLGIPIMLVTGNT----VQFAEA   52 (231)
T ss_dssp             CCEEEEESTTTTBCTT--------------------------SCBCHHHHHHHHHHHHTTCCEEEECSSC----HHHHHH
T ss_pred             eeEEEEECCCCCCCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC----hhHHHH
Confidence            3689999999999863                          2355788999999999999999999999    455555


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .++..|++
T Consensus        53 ~~~~l~~~   60 (231)
T 1wr8_A           53 ASILIGTS   60 (231)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHcCCC
Confidence            56666665

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=98.46  E-value=3.5e-07  Score=79.81  Aligned_cols=59  Identities=20%  Similarity=0.214  Sum_probs=47.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++.                          ...-+.+.+.+++|+++|++++++|||+    ......
T Consensus         5 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~aL~~l~~~Gi~vviaTGR~----~~~~~~   54 (282)
T 1rkq_A            5 IKLIAIDMDGTLLLPD--------------------------HTISPAVKNAIAAARARGVNVVLTTGRP----YAGVHN   54 (282)
T ss_dssp             CCEEEECCCCCCSCTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEECSSC----GGGTHH
T ss_pred             ceEEEEeCCCCCCCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHH
Confidence            4689999999999863                          2355778999999999999999999999    444556


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++.+|++.
T Consensus        55 ~~~~l~l~~   63 (282)
T 1rkq_A           55 YLKELHMEQ   63 (282)
T ss_dssp             HHHHTTCCS
T ss_pred             HHHHhCCCC
Confidence            677788764

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=98.45  E-value=1.8e-07  Score=81.58  Aligned_cols=60  Identities=20%  Similarity=0.147  Sum_probs=46.1

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      ...+.|+||+||||+++.                          ....+.+.+.+++|+++|++++++|||+ .   ...
T Consensus        19 ~~~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~v~iaTGR~-~---~~~   68 (285)
T 3pgv_A           19 GMYQVVASDLDGTLLSPD--------------------------HFLTPYAKETLKLLTARGINFVFATGRH-Y---IDV   68 (285)
T ss_dssp             --CCEEEEECCCCCSCTT--------------------------SCCCHHHHHHHHHHHTTTCEEEEECSSC-G---GGG
T ss_pred             CcceEEEEeCcCCCCCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCC-H---HHH
Confidence            457899999999999863                          3356788999999999999999999999 3   333


Q ss_pred             HHHHHhCCCC
Q 025360          179 RDNLHNQGFV  188 (254)
Q Consensus       179 ~~~L~~~G~~  188 (254)
                      ...++.+|++
T Consensus        69 ~~~~~~l~~~   78 (285)
T 3pgv_A           69 GQIRDNLGIR   78 (285)
T ss_dssp             HHHHHHHCSC
T ss_pred             HHHHHhcCCC
Confidence            4455555654

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=98.44  E-value=1.7e-06  Score=79.74  Aligned_cols=90  Identities=12%  Similarity=0.094  Sum_probs=58.4

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC---CCcEE-----EecCC-C----CCCCCcccHHH
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG---YERLI-----MRTAA-D----KGKNAVTYKSE  211 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~---~~~li-----lr~~~-~----~~kp~~~yK~~  211 (254)
                      .+||+.+|++.|+++|+++++|||..    +..++.+.+++|+..   -++++     +..++ .    .......+..+
T Consensus       222 ~~p~~~eLi~~L~~~G~~v~IVSgg~----~~~v~~ia~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~~p~~~~~g  297 (385)
T 4gxt_A          222 TLDEMVDLYRSLEENGIDCYIVSASF----IDIVRAFATDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKDFPISIREG  297 (385)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHCTTSSCCCCGGGEEEECEEECTTCCEEEEECTTSCCCSTHH
T ss_pred             eCHHHHHHHHHHHHCCCeEEEEcCCc----HHHHHHHHHHhCcccCCCcceEEEeEEEEecCCceeeeecCccceeCCCc
Confidence            58999999999999999999999999    788888888887631   12322     21111 0    00000123333


Q ss_pred             HHHHHHH-----cCCcEEEEEcCCcccccccc
Q 025360          212 IRKQLLE-----EGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       212 ~r~~l~~-----~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ....+.+     .|++.++++||+.+|+.--.
T Consensus       298 K~~~i~~~~~~~~~~~~i~a~GDs~~D~~ML~  329 (385)
T 4gxt_A          298 KVQTINKLIKNDRNYGPIMVGGDSDGDFAMLK  329 (385)
T ss_dssp             HHHHHHHHTCCTTEECCSEEEECSGGGHHHHH
T ss_pred             hHHHHHHHHHhcCCCCcEEEEECCHhHHHHHh
Confidence            3333332     35667899999999985543

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=98.42  E-value=5.1e-07  Score=78.29  Aligned_cols=58  Identities=14%  Similarity=0.105  Sum_probs=48.6

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++.                          ....+.+.+.++.|+++|+.++++|||+    ......
T Consensus         6 ~kli~fDlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~~   55 (290)
T 3dnp_A            6 KQLLALNIDGALLRSN--------------------------GKIHQATKDAIEYVKKKGIYVTLVTNRH----FRSAQK   55 (290)
T ss_dssp             CCEEEECCCCCCSCTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEBCSSC----HHHHHH
T ss_pred             ceEEEEcCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC----hHHHHH
Confidence            5789999999999873                          2356788999999999999999999999    555567


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .+...|++
T Consensus        56 ~~~~~~~~   63 (290)
T 3dnp_A           56 IAKSLKLD   63 (290)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            77777775

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=98.40  E-value=4.9e-07  Score=78.74  Aligned_cols=59  Identities=17%  Similarity=0.133  Sum_probs=48.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      ++.|+|||||||+++.                          ....+.+.+.+++|+++|++++++|||+    ......
T Consensus         9 ~~li~~DlDGTLl~~~--------------------------~~~~~~~~~~l~~l~~~G~~~~iaTGR~----~~~~~~   58 (275)
T 1xvi_A            9 PLLVFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLREANVPVILCSSKT----SAEMLY   58 (275)
T ss_dssp             CEEEEEECTTTTSCSS--------------------------CCSCCTTHHHHHHHHHTTCCEEEECSSC----HHHHHH
T ss_pred             ceEEEEeCCCCCCCCC--------------------------CcCCHHHHHHHHHHHHCCCeEEEEcCCC----HHHHHH
Confidence            5789999999999852                          1123556899999999999999999999    677777


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++.+|++.
T Consensus        59 ~~~~l~~~~   67 (275)
T 1xvi_A           59 LQKTLGLQG   67 (275)
T ss_dssp             HHHHTTCTT
T ss_pred             HHHHcCCCC
Confidence            888888864

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=98.38  E-value=6.8e-07  Score=78.02  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++.                          ....+...+.++.|+++|++++++|||+    ...+..
T Consensus         4 ikli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~~   53 (288)
T 1nrw_A            4 MKLIAIDLDGTLLNSK--------------------------HQVSLENENALRQAQRDGIEVVVSTGRA----HFDVMS   53 (288)
T ss_dssp             CCEEEEECCCCCSCTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEECSSC----HHHHHH
T ss_pred             eEEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHH
Confidence            4789999999999873                          2345778899999999999999999999    666667


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++.+|++.
T Consensus        54 ~~~~l~~~~   62 (288)
T 1nrw_A           54 IFEPLGIKT   62 (288)
T ss_dssp             HHGGGTCCC
T ss_pred             HHHHcCCCC
Confidence            777777753

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=98.37  E-value=3.9e-07  Score=77.94  Aligned_cols=44  Identities=23%  Similarity=0.304  Sum_probs=38.0

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      .+.|+||+||||+++.                          ....+...+.++.++++|++++++|||+
T Consensus         3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~~aTGR~   46 (258)
T 2pq0_A            3 RKIVFFDIDGTLLDEQ--------------------------KQLPLSTIEAVRRLKQSGVYVAIATGRA   46 (258)
T ss_dssp             CCEEEECTBTTTBCTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEEeCCCCCcCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            4789999999999873                          2345778899999999999999999998

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=98.37  E-value=5.4e-07  Score=78.48  Aligned_cols=60  Identities=15%  Similarity=0.222  Sum_probs=47.9

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      ...+.|+||+||||+++.                         .....+.+.+.+++|+++|++++++|||+    ....
T Consensus        19 ~~~kli~~DlDGTLl~~~-------------------------~~~i~~~~~~al~~l~~~G~~v~iaTGR~----~~~~   69 (283)
T 3dao_A           19 GMIKLIATDIDGTLVKDG-------------------------SLLIDPEYMSVIDRLIDKGIIFVVCSGRQ----FSSE   69 (283)
T ss_dssp             CCCCEEEECCBTTTBSTT-------------------------CSCCCHHHHHHHHHHHHTTCEEEEECSSC----HHHH
T ss_pred             cCceEEEEeCcCCCCCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEEcCCC----HHHH
Confidence            457899999999999873                         11456889999999999999999999999    5555


Q ss_pred             HHHHHhCCC
Q 025360          179 RDNLHNQGF  187 (254)
Q Consensus       179 ~~~L~~~G~  187 (254)
                      ...+...|.
T Consensus        70 ~~~~~~l~~   78 (283)
T 3dao_A           70 FKLFAPIKH   78 (283)
T ss_dssp             HHHTGGGGG
T ss_pred             HHHHHHcCC
Confidence            555655554

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=98.33  E-value=4.1e-07  Score=77.92  Aligned_cols=44  Identities=23%  Similarity=0.231  Sum_probs=38.4

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      .+.|+||+||||+++.                          ....+...+.+++++++|+.++++|||+
T Consensus         5 ~kli~fDlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~G~~~~iaTGR~   48 (274)
T 3fzq_A            5 YKLLILDIDGTLRDEV--------------------------YGIPESAKHAIRLCQKNHCSVVICTGRS   48 (274)
T ss_dssp             CCEEEECSBTTTBBTT--------------------------TBCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEEECCCCCCCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            4789999999999974                          2355778899999999999999999998

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=98.26  E-value=8.8e-07  Score=76.65  Aligned_cols=58  Identities=12%  Similarity=0.169  Sum_probs=44.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchH-HHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPG-VLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg-~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      .+.|+||+||||+++.                          ....+. +.+.+++|+++|++++++|||+    .....
T Consensus         3 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~   52 (271)
T 1rlm_A            3 VKVIVTDMDGTFLNDA--------------------------KTYNQPRFMAQYQELKKRGIKFVVASGNQ----YYQLI   52 (271)
T ss_dssp             CCEEEECCCCCCSCTT--------------------------SCCCHHHHHHHHHHHHHHTCEEEEECSSC----HHHHG
T ss_pred             ccEEEEeCCCCCCCCC--------------------------CcCCHHHHHHHHHHHHHCCCEEEEEeCCc----HHHHH
Confidence            4789999999999863                          223445 4899999999999999999999    55555


Q ss_pred             HHHHhCCCC
Q 025360          180 DNLHNQGFV  188 (254)
Q Consensus       180 ~~L~~~G~~  188 (254)
                      ..+..++..
T Consensus        53 ~~~~~l~~~   61 (271)
T 1rlm_A           53 SFFPELKDE   61 (271)
T ss_dssp             GGCTTTTTT
T ss_pred             HHHHhcCCC
Confidence            566665543

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=98.25  E-value=1.1e-06  Score=75.25  Aligned_cols=55  Identities=15%  Similarity=0.153  Sum_probs=44.8

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.|+|||||||+ +.                          . .++.+.+.++.|+++|++++++|||+    .......
T Consensus         3 kli~~DlDGTLl-~~--------------------------~-~~~~~~~~l~~l~~~g~~~~i~Tgr~----~~~~~~~   50 (249)
T 2zos_A            3 RLIFLDIDKTLI-PG--------------------------Y-EPDPAKPIIEELKDMGFEIIFNSSKT----RAEQEYY   50 (249)
T ss_dssp             EEEEECCSTTTC-TT--------------------------S-CSGGGHHHHHHHHHTTEEEEEBCSSC----HHHHHHH
T ss_pred             cEEEEeCCCCcc-CC--------------------------C-CcHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHH
Confidence            689999999999 42                          1 12447899999999999999999999    6666777


Q ss_pred             HHhCCCC
Q 025360          182 LHNQGFV  188 (254)
Q Consensus       182 L~~~G~~  188 (254)
                      ++.+|++
T Consensus        51 ~~~~~~~   57 (249)
T 2zos_A           51 RKELEVE   57 (249)
T ss_dssp             HHHHTCC
T ss_pred             HHHcCCC
Confidence            7777875

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=98.25  E-value=1.6e-06  Score=74.93  Aligned_cols=58  Identities=14%  Similarity=0.050  Sum_probs=46.6

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+||+||||+++.                          ....+.+.+.+++ +++|++++++|||+    ......
T Consensus         2 ikli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~-~~~Gi~v~iaTGR~----~~~~~~   50 (268)
T 1nf2_A            2 YRVFVFDLDGTLLNDN--------------------------LEISEKDRRNIEK-LSRKCYVVFASGRM----LVSTLN   50 (268)
T ss_dssp             BCEEEEECCCCCSCTT--------------------------SCCCHHHHHHHHH-HTTTSEEEEECSSC----HHHHHH
T ss_pred             ccEEEEeCCCcCCCCC--------------------------CccCHHHHHHHHH-HhCCCEEEEECCCC----hHHHHH
Confidence            3689999999999863                          2344678899999 99999999999999    566666


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .+...|++.
T Consensus        51 ~~~~l~~~~   59 (268)
T 1nf2_A           51 VEKKYFKRT   59 (268)
T ss_dssp             HHHHHSSSC
T ss_pred             HHHHhCCCC
Confidence            777777753

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=98.25  E-value=1.2e-06  Score=77.47  Aligned_cols=58  Identities=19%  Similarity=0.210  Sum_probs=46.6

Q ss_pred             CceEEEecCCccccc-hhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          101 MDAWILDVDDTCISN-VYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       101 ~~avIfDIDgTll~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      .+.|+|||||||+++ .                          ...-+.+.+.+++|+++|++++++|||+    .....
T Consensus        27 ikli~~DlDGTLl~~~~--------------------------~~is~~~~~al~~l~~~Gi~v~iaTGR~----~~~~~   76 (301)
T 2b30_A           27 IKLLLIDFDGTLFVDKD--------------------------IKVPSENIDAIKEAIEKGYMVSICTGRS----KVGIL   76 (301)
T ss_dssp             CCEEEEETBTTTBCCTT--------------------------TCSCHHHHHHHHHHHHHTCEEEEECSSC----HHHHH
T ss_pred             ccEEEEECCCCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEEcCCC----HHHHH
Confidence            479999999999986 3                          2345778999999999999999999999    55556


Q ss_pred             HHH--HhCC-CC
Q 025360          180 DNL--HNQG-FV  188 (254)
Q Consensus       180 ~~L--~~~G-~~  188 (254)
                      ..+  +.+| +.
T Consensus        77 ~~~~~~~l~~~~   88 (301)
T 2b30_A           77 SAFGEENLKKMN   88 (301)
T ss_dssp             HHHCHHHHHHHT
T ss_pred             HHhhHHhhcccc
Confidence            666  6655 54

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=98.24  E-value=9.2e-07  Score=77.78  Aligned_cols=57  Identities=11%  Similarity=0.152  Sum_probs=44.7

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchH-HHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPG-VLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg-~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      .+.|+||+||||+++.                          ....+. ..+.++.|+++|+.++++|||+    .....
T Consensus        37 iKli~fDlDGTLld~~--------------------------~~i~~~~~~~al~~l~~~G~~~~iaTGR~----~~~~~   86 (304)
T 3l7y_A           37 VKVIATDMDGTFLNSK--------------------------GSYDHNRFQRILKQLQERDIRFVVASSNP----YRQLR   86 (304)
T ss_dssp             CSEEEECCCCCCSCTT--------------------------SCCCHHHHHHHHHHHHHTTCEEEEECSSC----HHHHH
T ss_pred             eEEEEEeCCCCCCCCC--------------------------CccCHHHHHHHHHHHHHCCCEEEEEeCCC----HHHHH
Confidence            5899999999999873                          234455 6899999999999999999999    55555


Q ss_pred             HHHHhCCC
Q 025360          180 DNLHNQGF  187 (254)
Q Consensus       180 ~~L~~~G~  187 (254)
                      ..+...|+
T Consensus        87 ~~~~~l~~   94 (304)
T 3l7y_A           87 EHFPDCHE   94 (304)
T ss_dssp             TTCTTTGG
T ss_pred             HHHHHhCC
Confidence            55555554

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=98.23  E-value=2.4e-06  Score=73.57  Aligned_cols=53  Identities=21%  Similarity=0.132  Sum_probs=42.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      ++.|+||+||||+++.                          ...-+.+.+.+++|+++|++++++|||+    .....+
T Consensus         4 ~kli~~DlDGTLl~~~--------------------------~~i~~~~~~~l~~l~~~g~~~~iaTGR~----~~~~~~   53 (246)
T 3f9r_A            4 RVLLLFDVDGTLTPPR--------------------------LCQTDEMRALIKRARGAGFCVGTVGGSD----FAKQVE   53 (246)
T ss_dssp             SEEEEECSBTTTBSTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEECSSC----HHHHHH
T ss_pred             ceEEEEeCcCCcCCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC----HHHHHH
Confidence            5789999999999863                          2345788999999999999999999999    444444


Q ss_pred             HHH
Q 025360          181 NLH  183 (254)
Q Consensus       181 ~L~  183 (254)
                      .|.
T Consensus        54 ~l~   56 (246)
T 3f9r_A           54 QLG   56 (246)
T ss_dssp             HHC
T ss_pred             Hhh
Confidence            443

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=98.20  E-value=5.1e-06  Score=72.96  Aligned_cols=94  Identities=19%  Similarity=0.181  Sum_probs=61.1

Q ss_pred             hCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecC----CC------CC-CCCccc
Q 025360          140 KGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTA----AD------KG-KNAVTY  208 (254)
Q Consensus       140 ~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~----~~------~~-kp~~~y  208 (254)
                      ....++.||+.++++.|+++|++++++||-.    ...+...++++|+......+....    +.      .. ......
T Consensus       137 ~~~i~l~~g~~e~i~~l~~~gi~v~ivSgg~----~~~i~~i~~~~g~~~~~~~i~~n~l~~~~~~~~~~~~~~~i~~~~  212 (297)
T 4fe3_A          137 DSDVMLKEGYENFFGKLQQHGIPVFIFSAGI----GDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFN  212 (297)
T ss_dssp             TSCCCBCBTHHHHHHHHHHTTCCEEEEEEEE----HHHHHHHHHHTTCCCTTEEEEEECEEECTTSBEEEECSSCCCTTC
T ss_pred             hcCCCCCCcHHHHHHHHHHcCCeEEEEeCCc----HHHHHHHHHHcCCCcccceEEeeeEEEcccceeEeccccccchhh
Confidence            3467899999999999999999999999987    778888999999873222222211    10      00 001111


Q ss_pred             H------HHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          209 K------SEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       209 K------~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      |      ......+.+. ...++++||+.||+..+.
T Consensus       213 k~~~~~k~~~~~~~~~~-~~~v~~vGDGiNDa~m~k  247 (297)
T 4fe3_A          213 KHDGALKNTDYFSQLKD-NSNIILLGDSQGDLRMAD  247 (297)
T ss_dssp             HHHHHHTCHHHHHHTTT-CCEEEEEESSGGGGGTTT
T ss_pred             cccHHHHHHHHHHhhcc-CCEEEEEeCcHHHHHHHh
Confidence            2      1222233333 356778999999987744

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=98.15  E-value=3.7e-06  Score=69.77  Aligned_cols=59  Identities=22%  Similarity=0.438  Sum_probs=42.5

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||+++.                           ..++.+.++++.|+++|+++.++|++. ........+
T Consensus         3 ~k~i~fDlDGTLl~~~---------------------------~~~~~~~~~~~~l~~~g~~~~~~t~~~-g~~~~~~~~   54 (250)
T 2c4n_A            3 IKNVICDIDGVLMHDN---------------------------VAVPGAAEFLHGIMDKGLPLVLLTNYP-SQTGQDLAN   54 (250)
T ss_dssp             CCEEEEECBTTTEETT---------------------------EECTTHHHHHHHHHHTTCCEEEEESCC-SCCHHHHHH
T ss_pred             ccEEEEcCcceEEeCC---------------------------EeCcCHHHHHHHHHHcCCcEEEEECCC-CCCHHHHHH
Confidence            5799999999999873                           123444788899999999999999544 322555555


Q ss_pred             HHHhCCC
Q 025360          181 NLHNQGF  187 (254)
Q Consensus       181 ~L~~~G~  187 (254)
                      .+...|+
T Consensus        55 ~~~~~g~   61 (250)
T 2c4n_A           55 RFATAGV   61 (250)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            5555555

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=98.15  E-value=2.6e-06  Score=72.95  Aligned_cols=45  Identities=29%  Similarity=0.460  Sum_probs=38.5

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      .+.|+||+||||++..                         .....+.+.+.++.++++|++++++|||+
T Consensus        12 iKli~~DlDGTLl~~~-------------------------~~~i~~~~~~al~~l~~~G~~~~iaTGR~   56 (268)
T 3r4c_A           12 IKVLLLDVDGTLLSFE-------------------------THKVSQSSIDALKKVHDSGIKIVIATGRA   56 (268)
T ss_dssp             CCEEEECSBTTTBCTT-------------------------TCSCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEEEeCCCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            5899999999999832                         13456788999999999999999999997

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=98.10  E-value=3.4e-06  Score=72.29  Aligned_cols=44  Identities=25%  Similarity=0.350  Sum_probs=36.6

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      +.|+||+||||+++.                         .....+...+.++.|+++|+.++++|||+
T Consensus         3 kli~~DlDGTLl~~~-------------------------~~~i~~~~~~al~~l~~~G~~~~iaTGR~   46 (261)
T 2rbk_A            3 KALFFDIDGTLVSFE-------------------------THRIPSSTIEALEAAHAKGLKIFIATGRP   46 (261)
T ss_dssp             CEEEECSBTTTBCTT-------------------------TSSCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cEEEEeCCCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEECCCh
Confidence            689999999999873                         11245778888999999999999999997

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=98.01  E-value=6.6e-06  Score=70.51  Aligned_cols=41  Identities=20%  Similarity=0.244  Sum_probs=35.6

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      .|+||+||||+++.                           ...+.+.+.++.|+++|++++++|||+
T Consensus         2 li~~DlDGTLl~~~---------------------------~i~~~~~~al~~l~~~Gi~v~iaTGR~   42 (259)
T 3zx4_A            2 IVFTDLDGTLLDER---------------------------GELGPAREALERLRALGVPVVPVTAKT   42 (259)
T ss_dssp             EEEECCCCCCSCSS---------------------------SSCSTTHHHHHHHHHTTCCEEEBCSSC
T ss_pred             EEEEeCCCCCcCCC---------------------------cCCHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            58999999999872                           244567889999999999999999999

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=98.01  E-value=8.8e-06  Score=69.25  Aligned_cols=44  Identities=25%  Similarity=0.289  Sum_probs=37.8

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      +++.|+|||||||++..                          ...-+.+.+.+++|+++ ++++++|||+
T Consensus         5 ~~kli~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~-i~v~iaTGR~   48 (246)
T 2amy_A            5 GPALCLFDVDGTLTAPR--------------------------QKITKEMDDFLQKLRQK-IKIGVVGGSD   48 (246)
T ss_dssp             CSEEEEEESBTTTBCTT--------------------------SCCCHHHHHHHHHHTTT-SEEEEECSSC
T ss_pred             CceEEEEECCCCcCCCC--------------------------cccCHHHHHHHHHHHhC-CeEEEEcCCC
Confidence            47899999999999862                          22447789999999999 9999999999

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=98.00  E-value=6.8e-06  Score=70.07  Aligned_cols=58  Identities=26%  Similarity=0.257  Sum_probs=43.8

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.|+||+||||++...            +         ......-+.+.+.+++|+++| +++++|||+    .......
T Consensus         2 kli~~DlDGTLl~~~~------------~---------~~~~~i~~~~~~al~~l~~~g-~v~iaTGR~----~~~~~~~   55 (239)
T 1u02_A            2 SLIFLDYDGTLVPIIM------------N---------PEESYADAGLLSLISDLKERF-DTYIVTGRS----PEEISRF   55 (239)
T ss_dssp             CEEEEECBTTTBCCCS------------C---------GGGCCCCHHHHHHHHHHHHHS-EEEEECSSC----HHHHHHH
T ss_pred             eEEEEecCCCCcCCCC------------C---------cccCCCCHHHHHHHHHHhcCC-CEEEEeCCC----HHHHHHH
Confidence            5799999999998520            0         002346688999999999999 999999999    5666666


Q ss_pred             HHhC
Q 025360          182 LHNQ  185 (254)
Q Consensus       182 L~~~  185 (254)
                      +...
T Consensus        56 ~~~l   59 (239)
T 1u02_A           56 LPLD   59 (239)
T ss_dssp             SCSS
T ss_pred             hccc
Confidence            5544

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=97.99  E-value=2.3e-05  Score=70.61  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=34.3

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh----CCCC
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN----QGFV  188 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~----~G~~  188 (254)
                      ..+|++++|++.|+++|+++++||+..    +..++.+-..    .|+|
T Consensus       143 ~~~~~~~~l~~~l~~~G~~v~ivSas~----~~~v~~~a~~~~~~ygIp  187 (327)
T 4as2_A          143 RVFSGQRELYNKLMENGIEVYVISAAH----EELVRMVAADPRYGYNAK  187 (327)
T ss_dssp             EECHHHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHTCGGGSCCCC
T ss_pred             ccCHHHHHHHHHHHHCCCEEEEEeCCc----HHHHHHHHhhcccccCCC
Confidence            478999999999999999999999999    5666655554    5666

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=97.91  E-value=1.6e-05  Score=68.52  Aligned_cols=54  Identities=22%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      ..++.|+|||||||++..                          ...-+.+.+.+++|+++ ++++++|||+    ....
T Consensus        11 ~~~kli~~DlDGTLl~~~--------------------------~~is~~~~~al~~l~~~-i~v~iaTGR~----~~~~   59 (262)
T 2fue_A           11 KERVLCLFDVDGTLTPAR--------------------------QKIDPEVAAFLQKLRSR-VQIGVVGGSD----YCKI   59 (262)
T ss_dssp             --CEEEEEESBTTTBSTT--------------------------SCCCHHHHHHHHHHTTT-SEEEEECSSC----HHHH
T ss_pred             cCeEEEEEeCccCCCCCC--------------------------CcCCHHHHHHHHHHHhC-CEEEEEcCCC----HHHH
Confidence            357899999999999862                          22447889999999999 9999999999    4444


Q ss_pred             HHHHH
Q 025360          179 RDNLH  183 (254)
Q Consensus       179 ~~~L~  183 (254)
                      .+.|.
T Consensus        60 ~~~l~   64 (262)
T 2fue_A           60 AEQLG   64 (262)
T ss_dssp             HHHHS
T ss_pred             HHHHh
Confidence            44443

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=97.79  E-value=1.2e-05  Score=68.72  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=40.7

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL  182 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L  182 (254)
                      .|+|||||||+++..                           .++...+.++.++ +|++++++|||+    .......+
T Consensus         5 li~~DlDGTLl~~~~---------------------------~~~~~~~~l~~~~-~gi~v~iaTGR~----~~~~~~~~   52 (244)
T 1s2o_A            5 LLISDLDNTWVGDQQ---------------------------ALEHLQEYLGDRR-GNFYLAYATGRS----YHSARELQ   52 (244)
T ss_dssp             EEEECTBTTTBSCHH---------------------------HHHHHHHHHHTTG-GGEEEEEECSSC----HHHHHHHH
T ss_pred             EEEEeCCCCCcCCHH---------------------------HHHHHHHHHHHhc-CCCEEEEEcCCC----HHHHHHHH
Confidence            799999999998630                           1245667777755 689999999999    66666777


Q ss_pred             HhCCCC
Q 025360          183 HNQGFV  188 (254)
Q Consensus       183 ~~~G~~  188 (254)
                      +++|+.
T Consensus        53 ~~l~l~   58 (244)
T 1s2o_A           53 KQVGLM   58 (244)
T ss_dssp             HHHTCC
T ss_pred             HHcCCC
Confidence            776664

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=97.75  E-value=2.1e-05  Score=66.26  Aligned_cols=112  Identities=10%  Similarity=0.005  Sum_probs=72.5

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      .++..+|+|+||||+++..-.. ++                 -....-||+.+||+++. ++++|++.|+..    +.-.
T Consensus        32 ~~~~tLVLDLDeTLvh~~~~~~-~~-----------------~~v~~RPgl~eFL~~l~-~~yeivI~Tas~----~~ya   88 (204)
T 3qle_A           32 QRPLTLVITLEDFLVHSEWSQK-HG-----------------WRTAKRPGADYFLGYLS-QYYEIVLFSSNY----MMYS   88 (204)
T ss_dssp             CCSEEEEEECBTTTEEEEEETT-TE-----------------EEEEECTTHHHHHHHHT-TTEEEEEECSSC----HHHH
T ss_pred             CCCeEEEEeccccEEeeecccc-Cc-----------------eeEEeCCCHHHHHHHHH-hCCEEEEEcCCc----HHHH
Confidence            5678999999999998741100 00                 02567899999999998 789999999999    6666


Q ss_pred             HHHHHhCCCC-CCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccc
Q 025360          179 RDNLHNQGFV-GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       179 ~~~L~~~G~~-~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~  238 (254)
                      ...|+.++.. .++...+..+.....+....|     .|...|.  .-+++|+|+..-+....
T Consensus        89 ~~vl~~LDp~~~~f~~rl~R~~c~~~~g~y~K-----dL~~Lgrdl~~vIiIDDsp~~~~~~p  146 (204)
T 3qle_A           89 DKIAEKLDPIHAFVSYNLFKEHCVYKDGVHIK-----DLSKLNRDLSKVIIIDTDPNSYKLQP  146 (204)
T ss_dssp             HHHHHHTSTTCSSEEEEECGGGSEEETTEEEC-----CGGGSCSCGGGEEEEESCTTTTTTCG
T ss_pred             HHHHHHhCCCCCeEEEEEEecceeEECCeeee-----cHHHhCCChHHEEEEECCHHHHhhCc
Confidence            6777777765 254433332221111111122     2444454  34899999998776544

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=97.68  E-value=0.00039  Score=63.67  Aligned_cols=93  Identities=14%  Similarity=0.090  Sum_probs=56.2

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCC-CCc-EEE-ecCCCCCCCCcccHHHHHHHHHHc
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVG-YER-LIM-RTAADKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~-~~~-lil-r~~~~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ....||+.+||+++. ++++|++.|+..    +......|+.++... |+. -++ |.....    ...|.     |...
T Consensus        74 v~~RPg~~eFL~~l~-~~yeivI~Tas~----~~yA~~vl~~LDp~~~~f~~ri~sr~~~g~----~~~Kd-----L~~L  139 (372)
T 3ef0_A           74 IKFRPGLAQFLQKIS-ELYELHIYTMGT----KAYAKEVAKIIDPTGKLFQDRVLSRDDSGS----LAQKS-----LRRL  139 (372)
T ss_dssp             EEECTTHHHHHHHHH-TTEEEEEECSSC----HHHHHHHHHHHCTTSCSSSSCEECTTTSSC----SSCCC-----GGGT
T ss_pred             EEECcCHHHHHHHHh-cCcEEEEEeCCc----HHHHHHHHHHhccCCceeeeEEEEecCCCC----cceec-----HHHh
Confidence            345799999999998 789999999999    455555555555544 332 344 432211    11121     3322


Q ss_pred             -CC--cEEEEEcCCcccccccccCCcEEEeCCCCCC
Q 025360          220 -GY--RIWGNIGDQWSDLQGECTGNRTFKLPNPMYF  252 (254)
Q Consensus       220 -Gy--~i~~~IGDq~sDi~ga~~g~r~fklPNp~y~  252 (254)
                       |.  +-+++|+|+..-+...  . -.+.++.-.||
T Consensus       140 ~~~dl~~viiiDd~~~~~~~~--p-N~I~i~~~~~f  172 (372)
T 3ef0_A          140 FPCDTSMVVVIDDRGDVWDWN--P-NLIKVVPYEFF  172 (372)
T ss_dssp             CSSCCTTEEEEESCSGGGTTC--T-TEEECCCCCCS
T ss_pred             cCCCCceEEEEeCCHHHcCCC--C-cEeeeCCcccc
Confidence             43  4588899998644433  2 45666655554

>1y8a_A Hypothetical protein AF1437; structural genomics, protein structu initiative, PSI, midwest center for structural genomics; 1.40A {Archaeoglobus fulgidus} SCOP: c.108.1.24

Probab=97.51  E-value=0.00061  Score=60.56  Aligned_cols=40  Identities=15%  Similarity=0.145  Sum_probs=32.4

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGF  187 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~  187 (254)
                      ..+.+++.++++.|++ |+.+.++|+..    +..+...+...|+
T Consensus       102 ~~~~~~~~~~l~~l~~-g~~~~i~t~~~----~~~~~~~~~~~~~  141 (332)
T 1y8a_A          102 AKFVPDAEKAMATLQE-RWTPVVISTSY----TQYLRRTASMIGV  141 (332)
T ss_dssp             CCBCTTHHHHHHHHHT-TCEEEEEEEEE----HHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHc-CCcEEEEECCc----eEEEcccchhhhh
Confidence            4778999999999999 99999999977    4455555666676

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=97.47  E-value=0.00022  Score=68.18  Aligned_cols=98  Identities=24%  Similarity=0.228  Sum_probs=61.7

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC-CC-------------CCCCcEEEecCCCCC-----CC
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ-GF-------------VGYERLIMRTAADKG-----KN  204 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~-G~-------------~~~~~lilr~~~~~~-----kp  204 (254)
                      .+-|.+..+|+.|++.| +++++||.+    ...|...+..+ |+             .++|++++....-+.     .|
T Consensus       246 ~kdp~l~~~L~~Lr~~G-KlfLiTNS~----~~yv~~~m~yllg~~~~~~~~~~~~dWrdlFD~vI~~A~KP~FF~~~~p  320 (555)
T 2jc9_A          246 VKDGKLPLLLSRMKEVG-KVFLATNSD----YKYTDKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVDARKPLFFGEGTV  320 (555)
T ss_dssp             CCCTHHHHHHHHHHHHS-EEEEECSSC----HHHHHHHHHHHTCSSSSSSTTSCCCCGGGGCSEEEESCCTTGGGTTCCC
T ss_pred             CCChHHHHHHHHHHHcC-CEEEEeCCC----hHHHHHHHHHhcCCCccccccccccchhhhCCEEEEeCCCCCcccCCCc
Confidence            34578999999999999 999999999    45555555544 53             234676554432100     00


Q ss_pred             ----------------------CcccHHH-HHHHHHHcCC--cEEEEEcCCc-ccccccc--cCCcEEEe
Q 025360          205 ----------------------AVTYKSE-IRKQLLEEGY--RIWGNIGDQW-SDLQGEC--TGNRTFKL  246 (254)
Q Consensus       205 ----------------------~~~yK~~-~r~~l~~~Gy--~i~~~IGDq~-sDi~ga~--~g~r~fkl  246 (254)
                                            ..+|..+ .+..++..|.  ..+++||||. +||.+++  .|-||+.+
T Consensus       321 fr~Vd~~tg~l~~~~~~~~l~~g~vY~gGn~~~~~~llg~~g~eVLYVGDhIftDIl~~kk~~GWrTiLV  390 (555)
T 2jc9_A          321 LRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLLGAKGKDILYIGDHIFGDILKSKKRQGWRTFLV  390 (555)
T ss_dssp             EEEEETTTTEECSSCCCSCCCTTCCEEECCHHHHHHHHTCCGGGEEEEESCCCCCCHHHHHHHCCEEEEE
T ss_pred             ceEeecCCCccccccccccccCCceeccCCHHHHHHHhCCCCCeEEEECCEehHhHHhHHhhcCeEEEEE
Confidence                                  0112000 1222233343  4699999999 7999996  79999876

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=97.43  E-value=6.3e-06  Score=70.78  Aligned_cols=98  Identities=11%  Similarity=-0.001  Sum_probs=60.4

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHh-CCCCCCCcEEEecCC-CCCCCCc-ccHHHHHHHHHHc
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHN-QGFVGYERLIMRTAA-DKGKNAV-TYKSEIRKQLLEE  219 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~-~G~~~~~~lilr~~~-~~~kp~~-~yK~~~r~~l~~~  219 (254)
                      ..++|++.++++.|+ +|+++ ++||.+ ...... ...|.. .|+..+++.++..+. ..+||.+ .|...    ++..
T Consensus       129 ~~~~~~~~~~l~~L~-~g~~~-i~tn~~-~~~~~~-~~~l~~~~~l~~~~~~~~~~~~~~~~KP~~~~~~~~----~~~~  200 (263)
T 1zjj_A          129 DLTYEKLKYATLAIR-NGATF-IGTNPD-ATLPGE-EGIYPGAGSIIAALKVATNVEPIIIGKPNEPMYEVV----REMF  200 (263)
T ss_dssp             TCBHHHHHHHHHHHH-TTCEE-EESCCC-SEEEET-TEEEECHHHHHHHHHHHHCCCCEECSTTSHHHHHHH----HHHS
T ss_pred             CCCHHHHHHHHHHHH-CCCEE-EEECCC-ccccCC-CCCcCCcHHHHHHHHHHhCCCccEecCCCHHHHHHH----HHhC
Confidence            568899999999999 89998 999988 422100 011111 122222222222222 3467654 33332    2224


Q ss_pred             CCcEEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          220 GYRIWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy~i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      ....+++|||+. +|+.+|. +|.+++.+..
T Consensus       201 ~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~  231 (263)
T 1zjj_A          201 PGEELWMVGDRLDTDIAFAKKFGMKAIMVLT  231 (263)
T ss_dssp             TTCEEEEEESCTTTHHHHHHHTTCEEEEESS
T ss_pred             CcccEEEECCChHHHHHHHHHcCCeEEEECC
Confidence            456799999996 9999998 7998887743

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=97.24  E-value=7.4e-06  Score=70.97  Aligned_cols=96  Identities=16%  Similarity=0.073  Sum_probs=59.2

Q ss_pred             hHHHHHHHHHHHCCCeEEEEeCCCccccH--HHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc----
Q 025360          147 PGVLVLFNKLIESGLKVILVTGRDEETFG--QVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE----  219 (254)
Q Consensus       147 pg~~ell~~L~~~G~~i~~vTgR~~e~~r--~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~----  219 (254)
                      +...++++.|+++|++ +++||.+ ....  .. ...+...|+..+++.++..+. ..+||.+..   .+..++..    
T Consensus       148 ~~~~~l~~~L~~~g~~-~i~tn~~-~~~~~~~~-~~~~~~~~l~~~f~~~~~~~~~~~~KP~p~~---~~~a~~~l~~~~  221 (284)
T 2hx1_A          148 HDLNKTVNLLRKRTIP-AIVANTD-NTYPLTKT-DVAIAIGGVATMIESILGRRFIRFGKPDSQM---FMFAYDMLRQKM  221 (284)
T ss_dssp             HHHHHHHHHHHHCCCC-EEEECCC-SEEECSSS-CEEECHHHHHHHHHHHHCSCEEEESTTSSHH---HHHHHHHHHTTS
T ss_pred             ccHHHHHHHHhcCCCe-EEEECCC-ccccCcCC-CccccCChHHHHHHHHhCCceeEecCCCHHH---HHHHHHHHhhcc
Confidence            4666677789999999 9999997 4322  10 001123344434443333332 345665532   22344444    


Q ss_pred             CCc--EEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          220 GYR--IWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy~--i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      |..  .+++|||+. +|+.+|+ +|.+++.+..
T Consensus       222 ~~~~~~~~~VGD~~~~Di~~A~~aG~~~i~v~~  254 (284)
T 2hx1_A          222 EISKREILMVGDTLHTDILGGNKFGLDTALVLT  254 (284)
T ss_dssp             CCCGGGEEEEESCTTTHHHHHHHHTCEEEEESS
T ss_pred             CCCcceEEEECCCcHHHHHHHHHcCCeEEEECC
Confidence            544  599999996 9999998 7999888754

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=97.16  E-value=0.00037  Score=69.19  Aligned_cols=102  Identities=19%  Similarity=0.238  Sum_probs=75.5

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHH
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVT  178 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T  178 (254)
                      .|...+.+.+||+++--..                       -.++..|++.+.++.|+++|++++++||+.    ...+
T Consensus       532 ~G~~vl~va~d~~~~G~i~-----------------------i~D~i~~~~~~aI~~L~~~Gi~v~mlTGd~----~~~a  584 (736)
T 3rfu_A          532 KGASVMFMAVDGKTVALLV-----------------------VEDPIKSSTPETILELQQSGIEIVMLTGDS----KRTA  584 (736)
T ss_dssp             TTCEEEEEEETTEEEEEEE-----------------------EECCBCSSHHHHHHHHHHHTCEEEEECSSC----HHHH
T ss_pred             cCCeEEEEEECCEEEEEEE-----------------------eeccchhhHHHHHHHHHHCCCeEEEECCCC----HHHH
Confidence            4577888888987764320                       136788999999999999999999999999    6667


Q ss_pred             HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          179 RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       179 ~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ....+++|+..+   +.+-       .+.-|..+-+.+.+.| ..+++|||..||..+-.
T Consensus       585 ~~ia~~lgi~~v---~a~~-------~P~~K~~~v~~l~~~g-~~V~~vGDG~ND~paL~  633 (736)
T 3rfu_A          585 EAVAGTLGIKKV---VAEI-------MPEDKSRIVSELKDKG-LIVAMAGDGVNDAPALA  633 (736)
T ss_dssp             HHHHHHHTCCCE---ECSC-------CHHHHHHHHHHHHHHS-CCEEEEECSSTTHHHHH
T ss_pred             HHHHHHcCCCEE---EEec-------CHHHHHHHHHHHHhcC-CEEEEEECChHhHHHHH
Confidence            777788899742   2111       1234666677777766 45888999999986544

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=97.15  E-value=0.00047  Score=67.40  Aligned_cols=81  Identities=19%  Similarity=0.124  Sum_probs=62.2

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.+.++.|+++|+++.++||++    ...+....++.|+..+   + ....      +.-|...-+.+.+.  
T Consensus       455 ~D~l~~~~~~~i~~L~~~Gi~v~~~TGd~----~~~a~~ia~~lgi~~~---~-~~~~------P~~K~~~v~~l~~~--  518 (645)
T 3j08_A          455 SDTLKESAKPAVQELKRMGIKVGMITGDN----WRSAEAISRELNLDLV---I-AEVL------PHQKSEEVKKLQAK--  518 (645)
T ss_dssp             ECCCTTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHHTCSEE---E-CSCC------TTCHHHHHHHHTTT--
T ss_pred             cCCchhHHHHHHHHHHHCCCEEEEEeCCC----HHHHHHHHHHcCCCEE---E-EeCC------HHhHHHHHHHHhhC--
Confidence            35678999999999999999999999999    6777778888999632   2 1111      13466666666654  


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      +.+++|||..||+.+..
T Consensus       519 ~~v~~vGDg~ND~~al~  535 (645)
T 3j08_A          519 EVVAFVGDGINDAPALA  535 (645)
T ss_dssp             CCEEEEECSSSCHHHHH
T ss_pred             CeEEEEeCCHhHHHHHH
Confidence            78999999999987665

>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase, hydrolase, calcium transport, calcium binding binding; HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB: 2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A* 2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A* 3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...

Probab=96.94  E-value=0.0012  Score=67.61  Aligned_cols=92  Identities=20%  Similarity=0.146  Sum_probs=66.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC----cEEEecCC-CCCC-------------
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE----RLIMRTAA-DKGK-------------  203 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~----~lilr~~~-~~~k-------------  203 (254)
                      .+++.|++.+.++.|+++|+++.++||+.    ...+....++.|+....    ..++.+.+ ..-+             
T Consensus       601 ~D~lr~~~~~~I~~l~~~Gi~v~miTGD~----~~ta~~ia~~lgi~~~~~~i~~~~~~g~~~~~l~~~~~~~~~~~~~v  676 (995)
T 3ar4_A          601 LDPPRKEVMGSIQLCRDAGIRVIMITGDN----KGTAIAICRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACC  676 (995)
T ss_dssp             ECCBCTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHHTSSCTTCCCTTTEEEHHHHHTSCHHHHHHHHHHCCE
T ss_pred             cCCCchhHHHHHHHHHHcCCEEEEECCCC----HHHHHHHHHHcCcCCCCCcccceEEEchhhhhCCHHHHHHHHhhCcE
Confidence            57889999999999999999999999999    66666777788996432    12222211 0000             


Q ss_pred             ---CCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          204 ---NAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       204 ---p~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                         -.+.-|..+-+.+++.| .+++++||..||+.+-+
T Consensus       677 ~~r~~P~~K~~~v~~l~~~g-~~v~~~GDG~ND~~alk  713 (995)
T 3ar4_A          677 FARVEPSHKSKIVEYLQSYD-EITAMTGDGVNDAPALK  713 (995)
T ss_dssp             EESCCSSHHHHHHHHHHTTT-CCEEEEECSGGGHHHHH
T ss_pred             EEEeCHHHHHHHHHHHHHCC-CEEEEEcCCchhHHHHH
Confidence               01345777777888776 57889999999997655

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=96.90  E-value=0.00069  Score=60.76  Aligned_cols=116  Identities=11%  Similarity=0.068  Sum_probs=70.2

Q ss_pred             hhhcCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc
Q 025360           94 VVLSGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEET  173 (254)
Q Consensus        94 ~~~~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~  173 (254)
                      +.+...+++.+|+|+||||++....            ...|       ....-||+.+||+++. ++|.|++-|+..   
T Consensus       133 ~~p~~~~k~tLVLDLDeTLvh~~~~------------~~~~-------~~~~RP~l~eFL~~l~-~~yeivIfTas~---  189 (320)
T 3shq_A          133 LAPPREGKKLLVLDIDYTLFDHRSP------------AETG-------TELMRPYLHEFLTSAY-EDYDIVIWSATS---  189 (320)
T ss_dssp             SSCCCTTCEEEEECCBTTTBCSSSC------------CSSH-------HHHBCTTHHHHHHHHH-HHEEEEEECSSC---
T ss_pred             CCCCcCCCcEEEEeccccEEccccc------------CCCc-------ceEeCCCHHHHHHHHH-hCCEEEEEcCCc---
Confidence            3444567899999999999987410            0011       1247799999999999 569999999999   


Q ss_pred             cHHHHHHHHHhCCCCC---CCcEEEecCCC--C--CCC-Cc-ccHHHHHHHHHHc-----CC--cEEEEEcCCccccccc
Q 025360          174 FGQVTRDNLHNQGFVG---YERLIMRTAAD--K--GKN-AV-TYKSEIRKQLLEE-----GY--RIWGNIGDQWSDLQGE  237 (254)
Q Consensus       174 ~r~~T~~~L~~~G~~~---~~~lilr~~~~--~--~kp-~~-~yK~~~r~~l~~~-----Gy--~i~~~IGDq~sDi~ga  237 (254)
                       +......|..++...   +...+++....  .  .+. .. ..|.     |...     |+  .-++.|+|+..-+...
T Consensus       190 -~~ya~~vld~Ld~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~vKd-----Ls~Lw~~~p~rdl~~tIiIDdsp~~~~~~  263 (320)
T 3shq_A          190 -MRWIEEKMRLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKP-----LGVIWALYKQYNSSNTIMFDDIRRNFLMN  263 (320)
T ss_dssp             -HHHHHHHHHHTTCTTCSSCCCCEEECGGGCEEEEETTTEEEEECC-----HHHHHHHCTTCCGGGEEEEESCGGGGTTS
T ss_pred             -HHHHHHHHHHhCCCCCcceeEEEEEcCCccccccccCCCCEEEEE-----hHHhhcccCCCChhHEEEEeCChHHhccC
Confidence             444455555554432   22223443311  0  011 11 2232     2222     43  3588899999877665


Q ss_pred             c
Q 025360          238 C  238 (254)
Q Consensus       238 ~  238 (254)
                      .
T Consensus       264 p  264 (320)
T 3shq_A          264 P  264 (320)
T ss_dssp             G
T ss_pred             c
Confidence            4

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=96.82  E-value=0.0021  Score=63.59  Aligned_cols=81  Identities=19%  Similarity=0.136  Sum_probs=61.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      .+++.|++.+.++.|+++|+++.++||+.    ...+....++.|+..   ++ ....      +.-|...-+.+.+.  
T Consensus       533 ~D~~~~~~~~~i~~l~~~Gi~v~~~TGd~----~~~a~~ia~~lgi~~---~~-~~~~------P~~K~~~v~~l~~~--  596 (723)
T 3j09_A          533 SDTLKESAKPAVQELKRMGIKVGMITGDN----WRSAEAISRELNLDL---VI-AEVL------PHQKSEEVKKLQAK--  596 (723)
T ss_dssp             ECCSCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHHTCSE---EE-CSCC------TTCHHHHHHHHTTT--
T ss_pred             cCCcchhHHHHHHHHHHCCCEEEEECCCC----HHHHHHHHHHcCCcE---EE-ccCC------HHHHHHHHHHHhcC--
Confidence            36788999999999999999999999999    667777778889963   22 1111      13466666666654  


Q ss_pred             cEEEEEcCCcccccccc
Q 025360          222 RIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~  238 (254)
                      ..+++|||..||...-.
T Consensus       597 ~~v~~vGDg~ND~~al~  613 (723)
T 3j09_A          597 EVVAFVGDGINDAPALA  613 (723)
T ss_dssp             CCEEEEECSSTTHHHHH
T ss_pred             CeEEEEECChhhHHHHh
Confidence            78999999999987655

>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A 1mo8_A* 1q3i_A

Probab=96.66  E-value=0.0043  Score=63.66  Aligned_cols=92  Identities=20%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC------------------------cEEEec
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE------------------------RLIMRT  197 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~------------------------~lilr~  197 (254)
                      .+++-|++.+.++.|+++|+++.++||+.    ...+....++.|+....                        ..++.+
T Consensus       597 ~Dplr~~~~~aI~~l~~aGI~v~miTGD~----~~tA~~ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~vi~G  672 (1028)
T 2zxe_A          597 IDPPRAAVPDAVGKCRSAGIKVIMVTGDH----PITAKAIAKGVGIISEGNETIEDIAARLNIPIGQVNPRDAKACVVHG  672 (1028)
T ss_dssp             ECCBCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHHTSSCTTCCCHHHHHHHTTCCGGGSCGGGCCEEEEEH
T ss_pred             CCCCChhHHHHHHHHHHcCCEEEEECCCC----HHHHHHHHHHcCCCCCCchhHHHHHhhcCcchhhccccccceEEEEc
Confidence            47899999999999999999999999999    55556666677875211                        112221


Q ss_pred             CCC-------------------CCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          198 AAD-------------------KGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       198 ~~~-------------------~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ...                   -....+..|..+-+.+++.| .+++++||..||+.+-+
T Consensus       673 ~~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iV~~lq~~g-~~V~~iGDG~ND~paLk  731 (1028)
T 2zxe_A          673 SDLKDLSTEVLDDILHYHTEIVFARTSPQQKLIIVEGCQRQG-AIVAVTGDGVNDSPALK  731 (1028)
T ss_dssp             HHHTTCCHHHHHHHHHHCSEEEEESCCHHHHHHHHHHHHHTT-CCEEEEECSGGGHHHHH
T ss_pred             HHhhhCCHHHHHHHHhhCCcEEEEEcCHHHHHHHHHHHHhCC-CEEEEEcCCcchHHHHH
Confidence            100                   00012345777777787777 57889999999986544

>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A

Probab=96.58  E-value=0.0077  Score=61.81  Aligned_cols=92  Identities=20%  Similarity=0.141  Sum_probs=62.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC------------------------cEEEec
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE------------------------RLIMRT  197 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~------------------------~lilr~  197 (254)
                      .+|+-|++.+.++.|+++|++++++|||.    ...+....++.|+..-.                        ..++.+
T Consensus       602 ~Dp~r~~~~~aI~~l~~aGI~vvmiTGd~----~~tA~~ia~~lgi~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g  677 (1034)
T 3ixz_A          602 IDPPRATVPDAVLKCRTAGIRVIMVTGDH----PITAKAIAASVGIISEGSETVEDIAARLRVPVDQVNRKDARACVING  677 (1034)
T ss_pred             cCCCchhHHHHHHHHHHcCCeEEEEeCCC----HHHHHHHHHHcCCCCCCchHHHHHHHhhCccchhccccccceeEEec
Confidence            57899999999999999999999999999    55566667778884210                        011111


Q ss_pred             CCCC-------------------CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          198 AADK-------------------GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       198 ~~~~-------------------~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ....                   ..-.+..|..+.+.+++.| .+++++||..||+..-+
T Consensus       678 ~~l~~~~~~~l~~~~~~~~~~v~ar~~P~~K~~iv~~lq~~g-~~V~a~GDG~ND~~mLk  736 (1034)
T 3ixz_A          678 MQLKDMDPSELVEALRTHPEMVFARTSPQQKLVIVESCQRLG-AIVAVTGDGVNDSPALK  736 (1034)
T ss_pred             HhhhhCCHHHHHHHHHhCCceEEEecCHHHHHHHHHHHHHcC-CEEEEECCcHHhHHHHH
Confidence            1000                   0001234566666777766 57899999999986544

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=96.56  E-value=5.8e-05  Score=62.40  Aligned_cols=99  Identities=18%  Similarity=0.122  Sum_probs=59.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEE---------------------------------EEeCCCccccHHHHHHHHHhCC-C
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVI---------------------------------LVTGRDEETFGQVTRDNLHNQG-F  187 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~---------------------------------~vTgR~~e~~r~~T~~~L~~~G-~  187 (254)
                      ...+.|++.++++.|++.|+++.                                 ++|+.+ +..+.    .+...| +
T Consensus        85 ~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~~-~~~~~----~~~~~~~~  159 (250)
T 2c4n_A           85 KKAYVVGEGALIHELYKAGFTITDVNPDFVIVGETRSYNWDMMHKAAYFVANGARFIATNPD-THGRG----FYPACGAL  159 (250)
T ss_dssp             CEEEEECCTHHHHHHHHTTCEECSSSCSEEEECCCTTCCHHHHHHHHHHHHTTCEEEESCCC-SBSST----TCBCHHHH
T ss_pred             CEEEEEcCHHHHHHHHHcCCcccCCCCCEEEEeCCCCCCHHHHHHHHHHHHCCCEEEEECCC-CCCCC----eeecchHH
Confidence            35678999999999999999998                                 777754 21111    111111 1


Q ss_pred             CCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCC-cccccccc-cCCcEEEeCC
Q 025360          188 VGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQ-WSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       188 ~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq-~sDi~ga~-~g~r~fklPN  248 (254)
                      ..+++.+...+. ..+||.   ...++..++..|..  .+++|||+ .+|+.++. +|..++.+..
T Consensus       160 ~~~~~~~~~~~~~~~~kpk---~~~~~~~~~~lgi~~~~~i~iGD~~~nDi~~~~~aG~~~~~v~~  222 (250)
T 2c4n_A          160 CAGIEKISGRKPFYVGKPS---PWIIRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVLS  222 (250)
T ss_dssp             HHHHHHHHCCCCEECSTTS---THHHHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEESS
T ss_pred             HHHHHHHhCCCceEeCCCC---HHHHHHHHHHcCCCcceEEEECCCchhHHHHHHHcCCeEEEECC
Confidence            111111111111 233332   24445556666764  59999999 69999998 7888877653

>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane protein, P-type ATPase, active transport, cryo-electron microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1

Probab=96.32  E-value=0.008  Score=61.01  Aligned_cols=92  Identities=17%  Similarity=0.137  Sum_probs=63.7

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC----CcEEEecCC---------------CCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY----ERLIMRTAA---------------DKG  202 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~----~~lilr~~~---------------~~~  202 (254)
                      .+++-|++.+.++.|++.|+++.++||..    .......-++.|+...    ..+.+.+.+               ...
T Consensus       533 ~Dp~R~ea~~aI~~l~~aGI~v~MiTGD~----~~TA~aIA~~lGI~~~~~~~~~~~~~g~~~~~~~el~~~~~~~~V~a  608 (920)
T 1mhs_A          533 MDPPRHDTYKTVCEAKTLGLSIKMLTGDA----VGIARETSRQLGLGTNIYNAERLGLGGGGDMPGSEVYDFVEAADGFA  608 (920)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCEEEEEESSC----HHHHHHHHHHHTSSCSCCCSSSSSSCBCCCGGGGGGGTTTTTTSCEE
T ss_pred             eccccccHHHHHHHHhhcCceEEEEcCCC----HHHHHHHHHHcCCCccccCccceeecCcccCCHHHHHHHHhhCeEEE
Confidence            46899999999999999999999999998    4555555667788521    111111100               000


Q ss_pred             CCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          203 KNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       203 kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .-.+.-|..+-+.+++.| .+++++||..||..+-+
T Consensus       609 rv~P~~K~~iV~~Lq~~g-~~Vam~GDGvNDapaLk  643 (920)
T 1mhs_A          609 EVFPQHKYNVVEILQQRG-YLVAMTGDGVNDAPSLK  643 (920)
T ss_dssp             SCCSTHHHHHHHHHHTTT-CCCEECCCCGGGHHHHH
T ss_pred             EeCHHHHHHHHHHHHhCC-CeEEEEcCCcccHHHHH
Confidence            112356888888888877 57889999999986544

>3b8c_A ATPase 2, plasma membrane-type; P-type ATPase, proton pump, ATP-binding, hydrogen ION transport, hydrolase, ION transport; HET: ACP; 3.60A {Arabidopsis thaliana}

Probab=95.48  E-value=0.01  Score=59.92  Aligned_cols=92  Identities=20%  Similarity=0.155  Sum_probs=63.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCC--CcEEEecCC-CC-----------------
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGY--ERLIMRTAA-DK-----------------  201 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~--~~lilr~~~-~~-----------------  201 (254)
                      .+++-|++.+.++.|++.|+++.++||..    .......-++.|+..-  ..-.+.+.+ +.                 
T Consensus       486 ~Dp~R~~a~~aI~~l~~aGI~v~MiTGD~----~~tA~~iA~~lGi~~~~~~~~~l~g~~~~~~~~~~~l~~~~~~~~v~  561 (885)
T 3b8c_A          486 FDPPRHDSAETIRRALNLGVNVKMITGDQ----LAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGF  561 (885)
T ss_dssp             CCCCCHHHHHHHHHHHHTTCCCEEEESSC----HHHHTHHHHTTTCTTCCSTTSSCCBGGGGTTSCCSCHHHHHHTSCCE
T ss_pred             ecccchhHHHHHHHHHHcCCcEEEEcCCC----hHHHHHHHHHhCCccccCCcceeeccccccccchhHHHHHHhhCcEE
Confidence            46889999999999999999999999998    5555556677898520  010111110 00                 


Q ss_pred             CCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          202 GKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       202 ~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      ..-.+.-|..+-+.+++.| .+++++||..||..+-+
T Consensus       562 arv~P~~K~~iV~~lq~~g-~~Vam~GDGvNDapaLk  597 (885)
T 3b8c_A          562 AGVFPEHKYEIVKKLQERK-HIVGMTGDGVNDAPALK  597 (885)
T ss_dssp             ECCCHHHHHHHHHHHHHTT-CCCCBCCCSSTTHHHHH
T ss_pred             EEECHHHHHHHHHHHHHCC-CeEEEEcCCchhHHHHH
Confidence            0012345777777888877 57889999999985533

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=95.37  E-value=0.036  Score=52.03  Aligned_cols=100  Identities=18%  Similarity=0.219  Sum_probs=60.9

Q ss_pred             chHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH------hCCCCCCCcEEEecCCC----------------CCC
Q 025360          146 IPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH------NQGFVGYERLIMRTAAD----------------KGK  203 (254)
Q Consensus       146 ~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~------~~G~~~~~~lilr~~~~----------------~~k  203 (254)
                      -|....+|+.|++.|.++|++||.+ -..-+.+...+-      -..+..+|++++....-                .+.
T Consensus       188 ~~~l~~~L~~lr~~GKklFLiTNS~-~~y~~~~M~y~~~~~~~~g~dWrdlFDvVIv~A~KP~FF~~~~~~~~v~~~~g~  266 (470)
T 4g63_A          188 EKEVVEGLKHFIRYGKKIFILTNSE-YSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENGT  266 (470)
T ss_dssp             CHHHHHHHHHHHTTTCEEEEECSSC-HHHHHHHHHHHTGGGSCTTCCGGGGCSEEEESCCTTHHHHSCCCEEEECTTTCC
T ss_pred             CHhHHHHHHHHHHcCCeEEEeeCCC-chHHHHHHHhhcccCCCCCCChhhhcCEEEECCCCCCcccCCCcceEEECCCCc
Confidence            4788899999999999999999999 444444444433      12344567777765320                000


Q ss_pred             --------CCcccHHHHHHHH-HHcCC--cEEEEEcCCc-ccccccc--cCCcEEEe
Q 025360          204 --------NAVTYKSEIRKQL-LEEGY--RIWGNIGDQW-SDLQGEC--TGNRTFKL  246 (254)
Q Consensus       204 --------p~~~yK~~~r~~l-~~~Gy--~i~~~IGDq~-sDi~ga~--~g~r~fkl  246 (254)
                              ...+|..+--..+ +-.|.  ..|++|||+. +||...+  .|=||+.+
T Consensus       267 l~~~~~~~~~~vY~gGn~~~l~~llg~~g~~VLY~GDhi~~Di~~~kk~~gWrT~~I  323 (470)
T 4g63_A          267 MTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDILRLKKDCNWRTALV  323 (470)
T ss_dssp             EEECCSSCCSEEEEECCHHHHHHHTTCCGGGEEEEESCCCSCHHHHHHSCCCEEEEE
T ss_pred             ccccccccCCceeecCcHHHHHHHhCCCCCeEEEECCchHHHHHhhhhccCCeEEEE
Confidence                    0113331111111 12233  3599999999 7998876  68788765

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=95.13  E-value=0.11  Score=43.88  Aligned_cols=39  Identities=21%  Similarity=0.111  Sum_probs=27.4

Q ss_pred             HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360          210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      ..++..++..|..  .+++|||+.+|+.........+...|
T Consensus       200 ~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~n  240 (279)
T 4dw8_A          200 LSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGN  240 (279)
T ss_dssp             HHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTT
T ss_pred             HHHHHHHHHcCCCHHHEEEECCChhhHHHHHHcCcEEEcCC
Confidence            4555556667765  49999999999998874335555544

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=94.70  E-value=0.071  Score=49.65  Aligned_cols=98  Identities=15%  Similarity=0.215  Sum_probs=55.2

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ...-||+.+||+++. ++|+|++.|... ..+.....+.|...|-- +. +++-|.....    ...|. +. .|-..+.
T Consensus        82 V~~RPgl~eFL~~ls-~~yEivIfTas~-~~YA~~Vl~~LDp~~~~-f~~Rl~sRd~cg~----~~~Kd-L~-~ll~rdl  152 (442)
T 3ef1_A           82 IKFRPGLAQFLQKIS-ELYELHIYTMGT-KAYAKEVAKIIDPTGKL-FQDRVLSRDDSGS----LAQKS-LR-RLFPCDT  152 (442)
T ss_dssp             EEECTTHHHHHHHHT-TTEEEEEECSSC-HHHHHHHHHHHCTTSTT-TTTCEECTTTSSC----SSCCC-GG-GTCSSCC
T ss_pred             EEeCCCHHHHHHHHh-CCcEEEEEcCCC-HHHHHHHHHHhccCCcc-ccceEEEecCCCC----ceeee-hH-HhcCCCc
Confidence            345799999999998 679999999999 55555555555544411 22 2333543211    01121 00 1111233


Q ss_pred             cEEEEEcCCcccccccccCCcEEEeCCCCCC
Q 025360          222 RIWGNIGDQWSDLQGECTGNRTFKLPNPMYF  252 (254)
Q Consensus       222 ~i~~~IGDq~sDi~ga~~g~r~fklPNp~y~  252 (254)
                      +-+++|+|+..-+...  . -.+.++.-.||
T Consensus       153 ~~vvIIDd~p~~~~~~--p-N~I~I~~~~fF  180 (442)
T 3ef1_A          153 SMVVVIDDRGDVWDWN--P-NLIKVVPYEFF  180 (442)
T ss_dssp             TTEEEEESCSGGGTTC--T-TEEECCCCCCS
T ss_pred             ceEEEEECCHHHhCCC--C-CEEEcCCcccc
Confidence            4588899987544332  2 45666555544

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=94.63  E-value=0.087  Score=44.39  Aligned_cols=105  Identities=10%  Similarity=-0.014  Sum_probs=59.1

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCcccc---HHHHH-HHHHhCCC-------------CCCCcEEEecCCC------
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETF---GQVTR-DNLHNQGF-------------VGYERLIMRTAAD------  200 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~---r~~T~-~~L~~~G~-------------~~~~~lilr~~~~------  200 (254)
                      .+.+.+.++++.+++.|+.+.+.|+.. ...   ..... ..+...++             ..+.++++..+..      
T Consensus        85 l~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~  163 (261)
T 2rbk_A           85 IPQEEVKAMAAFCEKKGVPCIFVEEHN-ISVCQPNEMVKKIFYDFLHVNVIPTVSFEEASNKEVIQMTPFITEEEEKEVL  163 (261)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEECSSC-EEEESCCHHHHHHTTTTTCCCCCCBCCHHHHHTSCCSEEEECCCHHHHHHHG
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEEeCCc-EEEeCccHHHHHHHHHhhcccCCCccccchhccCceeEEEEEeCHHHHHHHH
Confidence            355888999999999999988887654 211   01122 33343442             1233444432210      


Q ss_pred             -----------CC-----CCCcccH-HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCCC
Q 025360          201 -----------KG-----KNAVTYK-SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       201 -----------~~-----kp~~~yK-~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPNp  249 (254)
                                 ..     .+...-| ..++..++..|..  .+++|||+.+|+..+......+...|.
T Consensus       164 ~~~~~~~~~~s~~~~~ei~~~~~~K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~~v~~~n~  231 (261)
T 2rbk_A          164 PSIPTCEIGRWYPAFADVTAKGDTKQKGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGVAMGQA  231 (261)
T ss_dssp             GGSTTCEEECSSTTCCEEESTTCSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTTS
T ss_pred             HhcCCeEEEEecCCeEEecCCCCChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCceEEecCc
Confidence                       00     0111223 3445555666654  599999999999998843345665553

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=93.22  E-value=0.26  Score=40.78  Aligned_cols=91  Identities=14%  Similarity=0.122  Sum_probs=52.6

Q ss_pred             hHHHHHHHHHH-HC-CCeE-----------EEEe-CCCccccHHHHHHHHHhCCCCCCCcEEEecCC-----CCCCCCcc
Q 025360          147 PGVLVLFNKLI-ES-GLKV-----------ILVT-GRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-----DKGKNAVT  207 (254)
Q Consensus       147 pg~~ell~~L~-~~-G~~i-----------~~vT-gR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-----~~~kp~~~  207 (254)
                      +.+.++++.++ +. |+.+           .++| +..    ++...+.+++++  ...+++ .+..     ..++|   
T Consensus        84 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~--~~~~~~-~~~~~~ei~~~~~~---  153 (231)
T 1wr8_A           84 DEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETIN----VETVREIINELN--LNLVAV-DSGFAIHVKKPWIN---  153 (231)
T ss_dssp             SHHHHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSC----HHHHHHHHHHTT--CSCEEE-ECSSCEEEECTTCC---
T ss_pred             HHHHHHHHHHHHhCCCceEEecCCCceeeEEEECCCCC----HHHHHHHHHhcC--CcEEEE-ecCcEEEEecCCCC---
Confidence            56666777666 54 5543           5665 434    455666677665  234544 3321     12222   


Q ss_pred             cHHHHHHHHHHcCC--cEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          208 YKSEIRKQLLEEGY--RIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       208 yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      -...++..++..|.  ..+++|||+.+|+..+. +|. .+.+.|
T Consensus       154 K~~~~~~~~~~~~~~~~~~~~iGD~~nD~~~~~~ag~-~v~~~~  196 (231)
T 1wr8_A          154 KGSGIEKASEFLGIKPKEVAHVGDGENDLDAFKVVGY-KVAVAQ  196 (231)
T ss_dssp             HHHHHHHHHHHHTSCGGGEEEEECSGGGHHHHHHSSE-EEECTT
T ss_pred             hHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCC-eEEecC
Confidence            12344445555665  35899999999999887 453 355555

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=93.22  E-value=0.23  Score=42.14  Aligned_cols=99  Identities=13%  Similarity=-0.003  Sum_probs=50.4

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccH-HHHHHHHHHcCCc
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYK-SEIRKQLLEEGYR  222 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK-~~~r~~l~~~Gy~  222 (254)
                      .+++..+++..+.....++.+ ++.. +... ...+.|... .+. ..++..... ..-.|...-| .+++.-++..|..
T Consensus       143 ~~~~~~~~~~~~~~~~~ki~~-~~~~-~~~~-~~~~~l~~~-~~~-~~~~~s~~~~~ei~~~~~~K~~~l~~l~~~lgi~  217 (290)
T 3dnp_A          143 FVESLSDLLMDEPVSAPVIEV-YTEH-DIQH-DITETITKA-FPA-VDVIRVNDEKLNIVPKGVSKEAGLALVASELGLS  217 (290)
T ss_dssp             ECSCHHHHHHHSCCCCSEEEE-ECCG-GGHH-HHHHHHHHH-CTT-EEEEEEETTEEEEEETTCCHHHHHHHHHHHTTCC
T ss_pred             ccCCHHHHHhcCCCCceEEEE-eCCH-HHHH-HHHHHHHhh-CCc-EEEEEeCCCeEEEEECCCCHHHHHHHHHHHcCCC
Confidence            345566666666666777744 4434 3222 223333221 111 222222221 0001111224 5556666777764


Q ss_pred             --EEEEEcCCcccccccccCCcEEEeCC
Q 025360          223 --IWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       223 --i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                        .+++|||+.+|+.........|..-|
T Consensus       218 ~~~~i~~GD~~NDi~m~~~ag~~vam~n  245 (290)
T 3dnp_A          218 MDDVVAIGHQYDDLPMIELAGLGVAMGN  245 (290)
T ss_dssp             GGGEEEEECSGGGHHHHHHSSEEEECTT
T ss_pred             HHHEEEECCchhhHHHHHhcCCEEEecC
Confidence              59999999999998874334555544

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=92.80  E-value=0.16  Score=43.59  Aligned_cols=20  Identities=20%  Similarity=0.051  Sum_probs=17.3

Q ss_pred             CceEEEecCCccccchhhhh
Q 025360          101 MDAWILDVDDTCISNVYYYK  120 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~  120 (254)
                      .++|+||+||||+++.+.+.
T Consensus        32 i~~viFD~dGTL~ds~~~~~   51 (287)
T 3a1c_A           32 VTAVIFDKTGTLTKGKPEVT   51 (287)
T ss_dssp             CCEEEEECCCCCBCSCCEEE
T ss_pred             CCEEEEeCCCCCcCCCEEEE
Confidence            57999999999999987654

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=89.12  E-value=1.8  Score=35.81  Aligned_cols=103  Identities=15%  Similarity=0.113  Sum_probs=56.0

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccH----HHHHHHHHhCCC--C----------CCCcEEEecCCCC------
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFG----QVTRDNLHNQGF--V----------GYERLIMRTAADK------  201 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r----~~T~~~L~~~G~--~----------~~~~lilr~~~~~------  201 (254)
                      -+.+.+.++++.+++.|+.+.+.|+.. -...    ......+...+.  +          ...++++..+...      
T Consensus        82 ~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~  160 (258)
T 2pq0_A           82 LRREKVRALTEEAHKNGHPLVFMDAEK-MRASIGDHPHIHVSMASLKFAHPPVDPLYYENKDIYQALLFCRAEEEEPYVR  160 (258)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEECSSC-EEESSSSCHHHHHHHHHTTCCCCCBCTTGGGGSCCCEEEECSCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCeEEEEeCCc-EEEecCCcHHHHHHHHhhcCCccccccchhhccCceEEEEECCHHHHHHHHH
Confidence            356788899999999999888887643 2111    222233333331  1          1223333322100      


Q ss_pred             ---------CCC-------CcccH-HHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          202 ---------GKN-------AVTYK-SEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       202 ---------~kp-------~~~yK-~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                               ..|       ...-| .+++.-++..|..  .+++|||+.+|+.... +| ..+...|
T Consensus       161 ~~~~~~~~~~~~~~~ei~~~~~~K~~~l~~l~~~lgi~~~~~ia~GDs~NDi~ml~~ag-~~vam~n  226 (258)
T 2pq0_A          161 NYPEFRFVRWHDVSTDVLPAGGSKAEGIRMMIEKLGIDKKDVYAFGDGLNDIEMLSFVG-TGVAMGN  226 (258)
T ss_dssp             HCTTEEEEEEETTEEEEEESSCCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHHHSS-EEEEETT
T ss_pred             hCCCeEEEEeCCceEEEEECCCChHHHHHHHHHHhCCCHHHEEEECCcHHhHHHHHhCC-cEEEeCC
Confidence                     000       01223 3344455566654  5999999999998887 44 4455555

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=88.83  E-value=0.18  Score=42.81  Aligned_cols=87  Identities=17%  Similarity=0.103  Sum_probs=48.7

Q ss_pred             HHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-----CCCCCCcccHHHHHHHHHHcCCc--EEEEEc
Q 025360          156 LIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-----DKGKNAVTYKSEIRKQLLEEGYR--IWGNIG  228 (254)
Q Consensus       156 L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-----~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IG  228 (254)
                      +.+.++++.++|+.. +  .....+.|.+. +..+...+..+..     ..+++   -...++..++..|..  .+++||
T Consensus       142 ~~~~~~ki~i~~~~~-~--~~~~~~~l~~~-~~~~~~~~~s~~~~~ei~~~~~~---K~~~~~~l~~~l~i~~~~~~~~G  214 (271)
T 1rlm_A          142 IDDVLFKFSLNLPDE-Q--IPLVIDKLHVA-LDGIMKPVTSGFGFIDLIIPGLH---KANGISRLLKRWDLSPQNVVAIG  214 (271)
T ss_dssp             CCSCEEEEEEECCGG-G--HHHHHHHHHHH-TTTSSEEEECSTTEEEEECTTCS---HHHHHHHHHHHHTCCGGGEEEEE
T ss_pred             CCCceEEEEEEcCHH-H--HHHHHHHHHHH-cCCcEEEEeccCCeEEEEcCCCC---hHHHHHHHHHHhCCCHHHEEEEC
Confidence            345678898888755 3  33333444421 3323344443321     11211   124445555666754  599999


Q ss_pred             CCcccccccccCCcEEEeCCC
Q 025360          229 DQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       229 Dq~sDi~ga~~g~r~fklPNp  249 (254)
                      |+.+|+.........+...|.
T Consensus       215 D~~nD~~m~~~ag~~va~~na  235 (271)
T 1rlm_A          215 DSGNDAEMLKMARYSFAMGNA  235 (271)
T ss_dssp             CSGGGHHHHHHCSEEEECTTC
T ss_pred             CcHHHHHHHHHcCCeEEeCCc
Confidence            999999988843346666664

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=86.03  E-value=1.1  Score=37.33  Aligned_cols=71  Identities=11%  Similarity=-0.036  Sum_probs=42.4

Q ss_pred             cHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccH-HHHHHHHHHcCC----cEEEEEcCCcccccccccCCcEEEeCC
Q 025360          174 FGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYK-SEIRKQLLEEGY----RIWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       174 ~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK-~~~r~~l~~~Gy----~i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      ......+.|.+.++.    .+..+....-.|. .-| ..++.-++..|.    ..+++|||+.+|+.........+...|
T Consensus       147 ~~~~~~~~l~~~~~~----~~~s~~~~ei~~~-~~K~~~l~~l~~~~~i~~~~~~~~~~GD~~nD~~m~~~ag~~va~~n  221 (259)
T 3zx4_A          147 EVEAVLEALEAVGLE----WTHGGRFYHAAKG-ADKGRAVARLRALWPDPEEARFAVGLGDSLNDLPLFRAVDLAVYVGR  221 (259)
T ss_dssp             THHHHHHHHHHTTCE----EEECSSSEEEESS-CCHHHHHHHHHHTCSSHHHHTSEEEEESSGGGHHHHHTSSEEEECSS
T ss_pred             HHHHHHHHHHHCCcE----EEecCceEEEcCC-CCHHHHHHHHHHHhCCCCCCceEEEEeCCHHHHHHHHhCCCeEEeCC
Confidence            456667777776654    2222211111111 234 445555666776    569999999999998885446676666


Q ss_pred             C
Q 025360          249 P  249 (254)
Q Consensus       249 p  249 (254)
                      .
T Consensus       222 a  222 (259)
T 3zx4_A          222 G  222 (259)
T ss_dssp             S
T ss_pred             h
Confidence            4

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=85.53  E-value=0.64  Score=39.03  Aligned_cols=37  Identities=16%  Similarity=0.073  Sum_probs=23.5

Q ss_pred             HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEe
Q 025360          210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKL  246 (254)
Q Consensus       210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fkl  246 (254)
                      .+++.-++..|..  .+++|||+.+|+.........|..
T Consensus       200 ~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam  238 (279)
T 3mpo_A          200 GTLSELVDQLGLTADDVMTLGDQGNDLTMIKYAGLGVAM  238 (279)
T ss_dssp             HHHHHHHHHTTCCGGGEEEC--CCTTHHHHHHSTEECBC
T ss_pred             HHHHHHHHHcCCCHHHEEEECCchhhHHHHHhcCceeec
Confidence            4555556677764  499999999999888733233433

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=85.11  E-value=0.34  Score=44.13  Aligned_cols=21  Identities=24%  Similarity=0.374  Sum_probs=17.5

Q ss_pred             CceEEEecCCccccchhhhhh
Q 025360          101 MDAWILDVDDTCISNVYYYKG  121 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~  121 (254)
                      ++.|+||+||+++|-..|+--
T Consensus         1 ~~~~~fdvdgv~~~~~~~~d~   21 (384)
T 1qyi_A            1 MKKILFDVDGVFLSEERCFDV   21 (384)
T ss_dssp             CCEEEECSBTTTBCSHHHHHH
T ss_pred             CceEEEecCceeechhhhccH
Confidence            478999999999998776643

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=83.81  E-value=1.5  Score=36.30  Aligned_cols=39  Identities=18%  Similarity=0.087  Sum_probs=27.4

Q ss_pred             HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360          210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      .+++.-++..|..  .+++|||+.+|+.........|...|
T Consensus       203 ~~l~~l~~~lgi~~~~~i~~GD~~NDi~m~~~ag~~vam~n  243 (274)
T 3fzq_A          203 KAIKRLQERLGVTQKETICFGDGQNDIVMFQASDVTIAMKN  243 (274)
T ss_dssp             HHHHHHHHHHTCCSTTEEEECCSGGGHHHHHTCSEEEEETT
T ss_pred             HHHHHHHHHcCCCHHHEEEECCChhHHHHHHhcCceEEecC
Confidence            4455556667764  49999999999998884335555544

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=82.24  E-value=2.8  Score=35.82  Aligned_cols=39  Identities=13%  Similarity=0.148  Sum_probs=28.0

Q ss_pred             HHHHHHHHHcCCc--EEEEEcCCcccccccccCCcEEEeCC
Q 025360          210 SEIRKQLLEEGYR--IWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       210 ~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      .+++.-++..|..  .+++|||+.+|+.........|..-|
T Consensus       231 ~al~~l~~~lgi~~~e~i~~GDs~NDi~m~~~ag~~vam~n  271 (304)
T 3l7y_A          231 WALQQLLKRWNFTSDHLMAFGDGGNDIEMLKLAKYSYAMAN  271 (304)
T ss_dssp             HHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHCTEEEECTT
T ss_pred             HHHHHHHHHhCcCHHHEEEECCCHHHHHHHHhcCCeEEcCC
Confidence            4566666777764  49999999999998884335555554

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=80.49  E-value=1  Score=40.45  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCc-ccccccc-cCCcEEEeCC
Q 025360          221 YRIWGNIGDQW-SDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       221 y~i~~~IGDq~-sDi~ga~-~g~r~fklPN  248 (254)
                      ...+++|||+. +|+.||+ +|.+++.+..
T Consensus       290 ~~~~~~VGD~~~~Di~~A~~aG~~ti~V~~  319 (352)
T 3kc2_A          290 FHAVFMVGDNPASDIIGAQNYGWNSCLVKT  319 (352)
T ss_dssp             SSEEEEEESCTTTHHHHHHHHTCEEEECSS
T ss_pred             cceEEEEecCcHHHHHHHHHcCCEEEEEcc
Confidence            36799999999 6999998 7999888743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d2b82a1	209	c.108.1.12 (A:4-212) Class B acid phosphatase, Aph	4e-22
d1ltqa1	149	c.108.1.9 (A:153-301) Polynucleotide kinase, phosp	1e-06

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]} Length = 209

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

 Score = 88.5 bits (219), Expect = 4e-22
 Identities = 29/168 (17%), Positives = 53/168 (31%), Gaps = 19/168 (11%)

Query: 96  LSGDGMDAWILDVDDTCISN--VYYYKGKRYGCD----PYDPAGFRAWALKGGCPA--IP 147
           L+G    A   D+DDT + +   ++   K +  +      +P  +          +    
Sbjct: 30  LAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKE 89

Query: 148 GVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVT 207
               L +  +  G  +  VTGR       V++    N          +  A DK      
Sbjct: 90  VARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDK-----P 144

Query: 208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGE----CTGNRTFKLPNPMY 251
            ++   + L  +   I    GD  +D+         G R  +  N  Y
Sbjct: 145 GQNTKSQWL--QDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTY 190

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} Length = 149

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 44.7 bits (105), Expect = 1e-06
 Identities = 28/140 (20%), Positives = 46/140 (32%), Gaps = 21/140 (15%)

Query: 103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLK 162
           A I DVD T                PYD                P V+ L       G +
Sbjct: 9   AVIFDVDGTLAKMNGR--------GPYDLEKCDTD------VINPMVVELSKMYALMGYQ 54

Query: 163 VILVTGRDEETFGQV------TRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQL 216
           +++V+GR+  T          TR  + +   V       R   D  K+ V  + EI  + 
Sbjct: 55  IVVVSGRESGTKEDPTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKE-EIFWKH 113

Query: 217 LEEGYRIWGNIGDQWSDLQG 236
           +   + +   I D+   ++ 
Sbjct: 114 IAPHFDVKLAIDDRTQVVEM 133

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	99.93
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	99.85
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	99.71
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.7
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.66
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	99.63
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	99.61
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	99.6
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	99.59
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.56
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	99.54
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	99.53
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	99.51
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	99.47
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	99.45
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	99.42
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	99.42
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	99.42
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	99.42
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	99.42
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.42
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	99.41
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	99.41
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	99.41
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	99.37
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	99.33
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	99.26
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.23
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.17
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	98.99
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	98.88
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	98.85
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	98.57
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	98.53
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	98.52
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	98.52
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	98.49
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	98.48
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	98.46
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	98.42
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	98.42
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	98.36
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	98.35
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	98.32
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	98.29
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	98.26
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	98.26
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	98.25
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	98.23
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	98.2
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	97.9
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	97.9
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	97.88
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	97.87
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	97.86
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	97.82
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	97.33
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	94.67
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	92.37
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	89.66
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	87.5
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	81.84

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=99.93  E-value=2.5e-27  Score=199.44  Aligned_cols=144  Identities=17%  Similarity=0.154  Sum_probs=111.6

Q ss_pred             CCCCceEEEecCCccccchhhhhhhc--cC--CC--CCChHHHHHHHHh--CCCCCchHHHHHHHHHHHCCCeEEEEeCC
Q 025360           98 GDGMDAWILDVDDTCISNVYYYKGKR--YG--CD--PYDPAGFRAWALK--GGCPAIPGVLVLFNKLIESGLKVILVTGR  169 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~~~~~~~--~g--~~--~~~~~~~~~~~~~--~~~~~~pg~~ell~~L~~~G~~i~~vTgR  169 (254)
                      +.++.|||||||+|+|+|+||+....  +.  +.  .++++.|+.|...  ..+.|+||+++|+++++++|++|||||||
T Consensus        32 g~~P~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVTnR  111 (209)
T d2b82a1          32 GRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGR  111 (209)
T ss_dssp             TCCCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECS
T ss_pred             CCCCceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeEEEEeCC
Confidence            45566999999999999999876532  22  11  2478889888764  45678999999999999999999999999


Q ss_pred             CccccHHHHHHHHHh-CCCCCC--CcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cC---Cc
Q 025360          170 DEETFGQVTRDNLHN-QGFVGY--ERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TG---NR  242 (254)
Q Consensus       170 ~~e~~r~~T~~~L~~-~G~~~~--~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g---~r  242 (254)
                      + +..++.|.+||.+ +|++..  .++++++.. .      +|...|..+++  |+|++++|||++||.++. +|   .|
T Consensus       112 ~-~~~~e~T~~nL~K~lG~p~~~~~~vll~~~~-~------~K~~rr~~Ik~--y~I~l~~GD~l~Df~aA~eagi~~iR  181 (209)
T d2b82a1         112 S-PTKTETVSKTLADNFHIPATNMNPVIFAGDK-P------GQNTKSQWLQD--KNIRIFYGDSDNDITAARDVGARGIR  181 (209)
T ss_dssp             C-CCSSCCHHHHHHHHTTCCTTTBCCCEECCCC-T------TCCCSHHHHHH--TTEEEEEESSHHHHHHHHHTTCEEEE
T ss_pred             c-hhhHHHHHHHHHHHcCCCcccccceEeeCCC-C------CchHHHHHHHH--cCeEEEecCCHHHHhHHHHcCCCceE
Confidence            9 9999999999976 899743  467777543 2      33445666644  899999999999999876 44   45


Q ss_pred             EEEeCCCCC
Q 025360          243 TFKLPNPMY  251 (254)
Q Consensus       243 ~fklPNp~y  251 (254)
                      ++..||+.|
T Consensus       182 i~r~~~s~y  190 (209)
T d2b82a1         182 ILRASNSTY  190 (209)
T ss_dssp             CCCCTTCSS
T ss_pred             eeccCCCCC
Confidence            555577776

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.85  E-value=3.6e-22  Score=157.56  Aligned_cols=132  Identities=19%  Similarity=0.150  Sum_probs=103.7

Q ss_pred             CCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHH
Q 025360           98 GDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQV  177 (254)
Q Consensus        98 ~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~  177 (254)
                      +.++++|||||||||+++.+.        ..|+      |.....+.++||+.++++.|+++|++|+++|||+ +..+..
T Consensus         4 ~~kpk~vifDiDgTL~~~~~~--------~~~~------~~~~~~~~~~p~v~~~l~~l~~~G~~Iii~T~R~-~~~~~~   68 (149)
T d1ltqa1           4 PGKPKAVIFDVDGTLAKMNGR--------GPYD------LEKCDTDVINPMVVELSKMYALMGYQIVVVSGRE-SGTKED   68 (149)
T ss_dssp             TTSCEEEEEETBTTTBCCSSC--------CTTC------GGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSC-CCCSSS
T ss_pred             CCCCcEEEEEcCCCcEeCCCC--------CcCC------ccccccCccCHHHHHHHHHHHhccCeEEEEecCc-HHHHHH
Confidence            356899999999999987531        1222      2233457899999999999999999999999999 988889


Q ss_pred             HHHHHHhC--------CCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc-cCCcEEEe
Q 025360          178 TRDNLHNQ--------GFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       178 T~~~L~~~--------G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      |++||...        +.+ +..+.++..... +++..+|....+.+...+++++++|||+.+|+++++ +|.++|.+
T Consensus        69 t~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~d~~~k~~~l~~~~~~~~~i~~~igD~~~dv~a~~~~Gi~~~~V  144 (149)
T d1ltqa1          69 PTKYYRMTRKWVEDIAGVP-LVMQCQREQGDT-RKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVECWQV  144 (149)
T ss_dssp             TTHHHHHHHHHHHHTTCCC-CSEEEECCTTCC-SCHHHHHHHHHHHHTTTTCEEEEEEECCHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHhhhhhhcCCCc-EEEeeccccccc-CCchHHHHHHHHHhccCCCceEEEEcCCHHHHHHHHHCCCcEEEe
Confidence            99999763        333 344555554433 345677877777777778899999999999999998 89999987

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=6.2e-17  Score=133.70  Aligned_cols=101  Identities=16%  Similarity=0.097  Sum_probs=83.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..+.+||+.++++.|+++|++++++||.+    +..+...|+.+|+..|++.++.+++ ..+||.+.   .....+++.|
T Consensus        86 ~~~~~pg~~~~l~~L~~~g~~~~i~T~~~----~~~~~~~l~~~~l~~~F~~i~~~~~~~~~Kp~~~---~~~~~~~~l~  158 (218)
T d1te2a_          86 TRPLLPGVREAVALCKEQGLLVGLASASP----LHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQ---VYLDCAAKLG  158 (218)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEECTTSSCCTTSTH---HHHHHHHHHT
T ss_pred             cccccchHHHHHHHhhhcccccccccccc----ccccccccccccccccccccccccccccchhhHH---HHHHHHHHcC
Confidence            45789999999999999999999999999    8888999999999888887777765 55676543   3334566666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .+++|||+.+|+.+|+ +|..++.++++
T Consensus       159 ~~~~~~l~igD~~~di~aA~~~G~~~i~v~~~  190 (218)
T d1te2a_         159 VDPLTCVALEDSVNGMIASKAARMRSIVVPAP  190 (218)
T ss_dssp             SCGGGEEEEESSHHHHHHHHHTTCEEEECCCT
T ss_pred             CCchhcEEEeeCHHHHHHHHHcCCEEEEECCC
Confidence            64  4999999999999998 79999998765

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.70  E-value=1.8e-17  Score=135.92  Aligned_cols=102  Identities=18%  Similarity=0.150  Sum_probs=81.5

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++++.|+++|++++++||++ +    .+...|+++|+..|++.++.+++ ..+||.+   ...+..+++.|
T Consensus        80 ~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~-~----~~~~~l~~~gl~~~f~~i~~s~~~~~~Kp~~---~~~~~~~~~~~  151 (204)
T d2go7a1          80 QVVLMPGAREVLAWADESGIQQFIYTHKG-N----NAFTILKDLGVESYFTEILTSQSGFVRKPSP---EAATYLLDKYQ  151 (204)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEECSSC-T----HHHHHHHHHTCGGGEEEEECGGGCCCCTTSS---HHHHHHHHHHT
T ss_pred             cCcccchHHhhhhcccccccchhhhcccc-h----hhhhhhhhcccccccccccccccccccchhH---HHHHHHHHHhC
Confidence            45778999999999999999999999988 3    24457899999999888887665 4566654   33344566666


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPMY  251 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~y  251 (254)
                      ..  .|++|||+.+|+.+|+ +|.+++.+.+..|
T Consensus       152 ~~p~~~l~VgD~~~Di~~A~~~G~~~i~v~~~~~  185 (204)
T d2go7a1         152 LNSDNTYYIGDRTLDVEFAQNSGIQSINFLESTY  185 (204)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEESSCCSC
T ss_pred             CCCceEEEEeCCHHHHHHHHHcCCeEEEEcCCCC
Confidence            64  5999999999999998 8999998877654

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.66  E-value=4.7e-16  Score=126.44  Aligned_cols=100  Identities=19%  Similarity=0.142  Sum_probs=80.5

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ....++||+.++++.|+++|++++++||++    +.. .+.|+++|+..+++.++.+++ ..+||++.   ..+..++..
T Consensus        76 ~~~~~~~gv~~~l~~l~~~g~~~~i~Sn~~----~~~-~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~---~~~~~~~~~  147 (187)
T d2fi1a1          76 EHPILFEGVSDLLEDISNQGGRHFLVSHRN----DQV-LEILEKTSIAAYFTEVVTSSSGFKRKPNPE---SMLYLREKY  147 (187)
T ss_dssp             TSCCBCTTHHHHHHHHHHTTCEEEEECSSC----THH-HHHHHHTTCGGGEEEEECGGGCCCCTTSCH---HHHHHHHHT
T ss_pred             hcCcccchhHHHHHHHHhhhccccccccCc----cch-hhhhhhhccccccccccccccccccCCCHH---HHHHHHHHc
Confidence            467889999999999999999999999988    433 456899999988888887765 55677652   233355667


Q ss_pred             CCcEEEEEcCCcccccccc-cCCcEEEeCC
Q 025360          220 GYRIWGNIGDQWSDLQGEC-TGNRTFKLPN  248 (254)
Q Consensus       220 Gy~i~~~IGDq~sDi~ga~-~g~r~fklPN  248 (254)
                      |...+++|||+..|+++|+ +|.+++.+..
T Consensus       148 ~~~~~l~vgDs~~Di~aA~~aG~~~i~v~~  177 (187)
T d2fi1a1         148 QISSGLVIGDRPIDIEAGQAAGLDTHLFTS  177 (187)
T ss_dssp             TCSSEEEEESSHHHHHHHHHTTCEEEECSC
T ss_pred             CCCCeEEEeCCHHHHHHHHHcCCEEEEECC
Confidence            7778999999999999997 8999988764

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=99.63  E-value=1.2e-15  Score=125.44  Aligned_cols=102  Identities=15%  Similarity=0.044  Sum_probs=81.4

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ....++||+.++++.|+++|++++++||.+    +..+...|+++|+..+++.++.... ...||.+..   ....+...
T Consensus        92 ~~~~l~~~~~~~L~~L~~~g~~~~i~tn~~----~~~~~~~l~~~gl~~~f~~~~~~~~~~~~kp~p~~---~~~~~~~~  164 (224)
T d2hsza1          92 NISRLYPNVKETLEALKAQGYILAVVTNKP----TKHVQPILTAFGIDHLFSEMLGGQSLPEIKPHPAP---FYYLCGKF  164 (224)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHTTCGGGCSEEECTTTSSSCTTSSHH---HHHHHHHH
T ss_pred             cccchHHHHHHHHHHHhccCCccccccccc----HHHHHHHHHhcCchhhccccccccccccccccchh---hHHHHHHh
Confidence            356789999999999999999999999999    7888889999999988877776655 455654432   23344555


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      |..  .+++|||+.+|+.+|+ +|.+++.+.++
T Consensus       165 ~~~~~~~~~igD~~~Di~~A~~aG~~~i~v~~g  197 (224)
T d2hsza1         165 GLYPKQILFVGDSQNDIFAAHSAGCAVVGLTYG  197 (224)
T ss_dssp             TCCGGGEEEEESSHHHHHHHHHHTCEEEEESSS
T ss_pred             hhhhhccchhcCcHHHHHHHHHcCCeEEEEeCC
Confidence            554  5999999999999998 78999988754

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.61  E-value=1.6e-15  Score=125.27  Aligned_cols=99  Identities=19%  Similarity=0.207  Sum_probs=79.9

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++||+.++++.|++.|++++++||+. .     ....|+..|+..+++.++.+++ ..+||.+   ...+..++..|
T Consensus        89 ~~~~~~g~~~~l~~l~~~~~~i~i~s~~~-~-----~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~---~~~~~~l~~~~  159 (221)
T d1o08a_          89 PADVYPGILQLLKDLRSNKIKIALASASK-N-----GPFLLERMNLTGYFDAIADPAEVAASKPAP---DIFIAAAHAVG  159 (221)
T ss_dssp             GGGBCTTHHHHHHHHHHTTCEEEECCSCT-T-----HHHHHHHTTCGGGCSEECCTTTSSSCTTST---HHHHHHHHHTT
T ss_pred             cccccCCceeccccccccccceEEEeecc-h-----hhHHHHhhccccccccccccccccccccCh---HHHHHHHHHcC
Confidence            35789999999999999999999999987 2     3467888999988887777766 4567654   33445677777


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ..  .|++|||+..|+.+|+ +|++++.++++
T Consensus       160 i~~~~~l~VgD~~~di~~A~~aG~~~i~v~~~  191 (221)
T d1o08a_         160 VAPSESIGLEDSQAGIQAIKDSGALPIGVGRP  191 (221)
T ss_dssp             CCGGGEEEEESSHHHHHHHHHHTCEEEEESCH
T ss_pred             CCCceEEEEecCHHHHHHHHHcCCEEEEECCh
Confidence            65  4999999999999998 79999998764

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.60  E-value=6.3e-16  Score=127.03  Aligned_cols=139  Identities=19%  Similarity=0.144  Sum_probs=101.3

Q ss_pred             CceEEEecCCccccchhhhhhhc------cCCC---------------------CCChHHH-------HHHHHh--CCCC
Q 025360          101 MDAWILDVDDTCISNVYYYKGKR------YGCD---------------------PYDPAGF-------RAWALK--GGCP  144 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~------~g~~---------------------~~~~~~~-------~~~~~~--~~~~  144 (254)
                      .++||||+||||+|+.+.+.+..      +|..                     ......+       .++...  ...+
T Consensus         3 ~k~viFD~DGTL~ds~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (207)
T d2hdoa1           3 YQALMFDIDGTLTNSQPAYTTVMREVLATYGKPFSPAQAQKTFPMAAEQAMTELGIAASEFDHFQAQYEDVMASHYDQIE   82 (207)
T ss_dssp             CSEEEECSBTTTEECHHHHHHHHHHHHHTTTCCCCHHHHHHHTTSCHHHHHHHTTCCGGGHHHHHHHHHHHHTTCGGGCE
T ss_pred             CcEEEEeCCCCcCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHhcchhhhhhhccccchhhHHHHHHHhhhhhcccccccc
Confidence            57999999999999877554421      2210                     0111112       222222  2467


Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCCc-
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGYR-  222 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy~-  222 (254)
                      ++||+.++++.|++ +++++++||..    +..+...|+++|+..+++.+...++ ..+||.+   ......+++.|.. 
T Consensus        83 ~~~g~~~~L~~l~~-~~~~~ivT~~~----~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p---~~~~~~~~~~~~~~  154 (207)
T d2hdoa1          83 LYPGITSLFEQLPS-ELRLGIVTSQR----RNELESGMRSYPFMMRMAVTISADDTPKRKPDP---LPLLTALEKVNVAP  154 (207)
T ss_dssp             ECTTHHHHHHHSCT-TSEEEEECSSC----HHHHHHHHTTSGGGGGEEEEECGGGSSCCTTSS---HHHHHHHHHTTCCG
T ss_pred             cccchhhhhhhhcc-ccccccccccc----ccccccccccccccccccccccccccccchhhh---hhhcccccceeeec
Confidence            89999999999975 79999999999    8889999999999988888887765 5667655   3334456666764 


Q ss_pred             -EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          223 -IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       223 -i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                       .+++|||+.+|+.+|+ +|++++.+.
T Consensus       155 ~~~l~VgDs~~Di~~a~~aG~~~i~v~  181 (207)
T d2hdoa1         155 QNALFIGDSVSDEQTAQAANVDFGLAV  181 (207)
T ss_dssp             GGEEEEESSHHHHHHHHHHTCEEEEEG
T ss_pred             cceeEecCCHHHHHHHHHcCCeEEEEe
Confidence             5899999999999987 899888765

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=99.59  E-value=1.2e-15  Score=129.11  Aligned_cols=98  Identities=21%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC-cEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE-RLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~-~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...++||+.++|+.|+++|++++++||.+    +..+...|+.+|+..|+ +.++.+++ ..+||++   ......+++.
T Consensus        97 ~~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~----~~~~~~~l~~~~l~~~f~d~~~~~d~~~~~KP~p---~~~~~~~~~l  169 (257)
T d1swva_          97 YASPINGVKEVIASLRERGIKIGSTTGYT----REMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYP---WMCYKNAMEL  169 (257)
T ss_dssp             GCCBCTTHHHHHHHHHHTTCEEEEBCSSC----HHHHHHHHHHHHHTTCCCSCCBCGGGSSCCTTSS---HHHHHHHHHH
T ss_pred             cCccCCcHHHHHHHHHhcccceeecCCCc----hhhHHHHHHHHhhcccccccccccccccccccCh---HHHHHHHHHh
Confidence            45799999999999999999999999999    78888888888888764 55666555 5667765   3333456666


Q ss_pred             CC---cEEEEEcCCcccccccc-cCCcEEEe
Q 025360          220 GY---RIWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       220 Gy---~i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      |.   ..|++|||+.+|+.+|+ +|++++.+
T Consensus       170 ~~~p~~~~v~VgDs~~Di~aA~~aG~~ti~v  200 (257)
T d1swva_         170 GVYPMNHMIKVGDTVSDMKEGRNAGMWTVGV  200 (257)
T ss_dssp             TCCSGGGEEEEESSHHHHHHHHHTTSEEEEE
T ss_pred             CCCCcceEEEEeCChhhHHHHHHCCCEEEEE
Confidence            64   34999999999999998 89998876

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=1.2e-14  Score=116.40  Aligned_cols=134  Identities=12%  Similarity=-0.012  Sum_probs=92.5

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCC----hHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYD----PAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFG  175 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~----~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r  175 (254)
                      -+++||||+||||.++....  +  +..++.    ....+.  ......++||+.++|+.|+++|++++++|+++ +  .
T Consensus         4 ~pK~viFDlDGTL~d~~~~~--~--~~~~~~~~~~~~~~d~--~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~-~--~   74 (164)
T d1u7pa_           4 LPKLAVFDLDYTLWPFWVDT--H--VDPPFHKSSDGTVRDR--RGQNIQLYPEVPEVLGRLQSLGVPVAAASRTS-E--I   74 (164)
T ss_dssp             CCSEEEECCBTTTBSSCTTT--T--CCSCEEECTTSCEEET--TCCEECCCTTHHHHHHHHHHTTCCEEEEECCS-C--H
T ss_pred             CCCEEEEcCCCcccCCcccc--c--cCccHhHHhcchHhhh--hccccccchHHHHHHHHHHHCCCcEEEEeccc-c--c
Confidence            47899999999999864211  1  111110    000000  01235789999999999999999999999987 3  3


Q ss_pred             HHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          176 QVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       176 ~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      ......|+.+++..++..+....    ||.   .......+++.|..  .+++|||+..|+++|+ +|..++.+|+.
T Consensus        75 ~~~~~~l~~~~~~~~~~~~~~~~----kp~---~~~~~~~~~~~~~~~~~~l~igD~~~di~aA~~aG~~~i~v~~G  144 (164)
T d1u7pa_          75 QGANQLLELFDLGKYFIQREIYP----GSK---VTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTCIHIRDG  144 (164)
T ss_dssp             HHHHHHHHHTTCGGGCSEEEESS----SCH---HHHHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEEEECSSC
T ss_pred             hhhccchhcccccccceeeeccc----CCC---hHHHHHHHHHhCCChHHEEEEcCCHHHHHHHHHcCCEEEEECCC
Confidence            44566788899987776655432    222   23344456666654  5999999999999998 89999999875

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.54  E-value=8.4e-15  Score=119.92  Aligned_cols=97  Identities=19%  Similarity=0.207  Sum_probs=77.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..+++|++.++++.|+.+| +++++||.+    +...+..|+++|+..|++.++...+. ++|   .+......++..|.
T Consensus        82 ~~~~~~~~~~~l~~l~~~~-~~~i~t~~~----~~~~~~~l~~~gl~~~fd~v~~~~~~-~~~---~p~~~~~~~~~~~~  152 (210)
T d2ah5a1          82 EAQLFPQIIDLLEELSSSY-PLYITTTKD----TSTAQDMAKNLEIHHFFDGIYGSSPE-APH---KADVIHQALQTHQL  152 (210)
T ss_dssp             SCEECTTHHHHHHHHHTTS-CEEEEEEEE----HHHHHHHHHHTTCGGGCSEEEEECSS-CCS---HHHHHHHHHHHTTC
T ss_pred             cccchhHHHHHHhhhhccc-chhhccccc----chhhhHHHHhhccccccccccccccc-ccc---cccccchhhhhhhc
Confidence            5678999999999998775 899999999    77888899999999888776665542 232   22445556777776


Q ss_pred             c--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          222 R--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       222 ~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      .  .+++|||+.+|+.+|+ +|.+++.+.
T Consensus       153 ~~~~~v~VGDs~~Di~aa~~aGi~~i~v~  181 (210)
T d2ah5a1         153 APEQAIIIGDTKFDMLGARETGIQKLAIT  181 (210)
T ss_dssp             CGGGEEEEESSHHHHHHHHHHTCEEEEES
T ss_pred             ccccceeecCCHHHHHHHHHcCCeEEEEc
Confidence            5  5999999999999998 899998875

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.53  E-value=4e-15  Score=123.74  Aligned_cols=102  Identities=18%  Similarity=0.151  Sum_probs=75.8

Q ss_pred             CCCCchHHHHHHHHHHHCC-CeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESG-LKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G-~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ..+++||+.++|+.|+++| ++++++||.+    +......|+.+|+..|++.+...++ ..+||.+.........+...
T Consensus        89 ~~~~~~g~~~~L~~L~~~g~~~~~v~t~~~----~~~~~~~l~~~gl~~~fd~i~~~~~~~~~k~~p~~~~~~~~~~~~~  164 (228)
T d2hcfa1          89 DITLLEGVRELLDALSSRSDVLLGLLTGNF----EASGRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERARRMTGA  164 (228)
T ss_dssp             GEEECTTHHHHHHHHHTCTTEEEEEECSSC----HHHHHHHHHTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHHHHHCC
T ss_pred             CceecCchHHHHhhhhccccccccccCCCc----chhhhhhhhhhcccccccccccccccccccchhHHHHHHhhhhccc
Confidence            3468899999999999997 8999999999    7888899999999988888777765 33343221111111122222


Q ss_pred             CC--cEEEEEcCCcccccccc-cCCcEEEeC
Q 025360          220 GY--RIWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       220 Gy--~i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      |.  ..+++|||+.+|+.+|+ +|++++.+-
T Consensus       165 ~~~p~~~l~VGD~~~Di~aA~~aG~~~i~v~  195 (228)
T d2hcfa1         165 NYSPSQIVIIGDTEHDIRCARELDARSIAVA  195 (228)
T ss_dssp             CCCGGGEEEEESSHHHHHHHHTTTCEEEEEC
T ss_pred             CCChhHheeecCChHHHHHHHHcCCEEEEEc
Confidence            44  35999999999999988 899988763

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=99.51  E-value=9e-14  Score=114.09  Aligned_cols=100  Identities=13%  Similarity=0.015  Sum_probs=80.6

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ....++|++.++++.++++|++++++||..    .......+...|+..+++.++.+.+ ...||++.   .....+++.
T Consensus        90 ~~~~~~~~~~~~l~~l~~~~~~~~i~tn~~----~~~~~~~~~~~~~~~~fd~~~~s~~~~~~KP~p~---~~~~~~~~~  162 (220)
T d1zrna_          90 LRLAPFSEVPDSLRELKRRGLKLAILSNGS----PQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNR---VYELAEQAL  162 (220)
T ss_dssp             GGCEECTTHHHHHHHHHHTTCEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEESGGGTCCTTSHH---HHHHHHHHH
T ss_pred             ccccccchhHHHHHHHHhcCCeEEeecchH----HHHHHHHHhhccccccccceeeeeeeeccccHHH---HHHHHHHHh
Confidence            346788999999999999999999999999    6777788888999887777777665 55677652   223345555


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      |..  .+++|||+.+|+.+|+ +|.+++.+.
T Consensus       163 g~~p~e~l~VgD~~~Di~~A~~aG~~~v~v~  193 (220)
T d1zrna_         163 GLDRSAILFVASNAWDATGARYFGFPTCWIN  193 (220)
T ss_dssp             TSCGGGEEEEESCHHHHHHHHHHTCCEEEEC
T ss_pred             CCCCceEEEEecChHhHHHHHHcCCEEEEEc
Confidence            654  5999999999999998 899998874

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=99.47  E-value=6.8e-14  Score=116.99  Aligned_cols=127  Identities=18%  Similarity=0.165  Sum_probs=87.1

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc-------
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE-------  171 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~-------  171 (254)
                      ...+||+||.||||..+..|..         ++         .+..++||+.++++.|+++|++++++||.++       
T Consensus        21 ~~~~Aif~DrDGtl~~~~~y~~---------~~---------~~~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~   82 (209)
T d2o2xa1          21 PHLPALFLDRDGTINVDTDYPS---------DP---------AEIVLRPQMLPAIATANRAGIPVVVVTNQSGIARGYFG   82 (209)
T ss_dssp             SSCCCEEECSBTTTBCCCSCTT---------CG---------GGCCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCC
T ss_pred             CCCCEEEEeCCCCeECCCCCCC---------CH---------HHeEecccHHHHHHHHHhhCCeEEEecccccchhhhhh
Confidence            4568999999999987643321         11         1346899999999999999999999999641       


Q ss_pred             ----cccHHHHHHHHHhCCCCCCCcEEEecCCC------------CCCCCcccHHHHHHHHHHcCCc--EEEEEcCCccc
Q 025360          172 ----ETFGQVTRDNLHNQGFVGYERLIMRTAAD------------KGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSD  233 (254)
Q Consensus       172 ----e~~r~~T~~~L~~~G~~~~~~lilr~~~~------------~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sD  233 (254)
                          +...+...+.|...|+. .+.++......            -+||.+   ..+.+.+++.|..  .+++|||+.+|
T Consensus        83 ~~~~~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~rKP~p---~ml~~a~~~~~i~~~~~~~VGD~~~D  158 (209)
T d2o2xa1          83 WSAFAAVNGRVLELLREEGVF-VDMVLACAYHEAGVGPLAIPDHPMRKPNP---GMLVEAGKRLALDLQRSLIVGDKLAD  158 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCC-CSEEEEECCCTTCCSTTCCSSCTTSTTSC---HHHHHHHHHHTCCGGGCEEEESSHHH
T ss_pred             hhhhhhhhhHHHHHhhhcccc-cceEEEecccccccccccccccccccccc---hhhhHhHHHhCCCccceEEeCCCHHH
Confidence                11223345667788875 23444443221            135544   3444556666654  59999999999


Q ss_pred             ccccc-cCCcEEEeC
Q 025360          234 LQGEC-TGNRTFKLP  247 (254)
Q Consensus       234 i~ga~-~g~r~fklP  247 (254)
                      +++|+ +|++++.+-
T Consensus       159 i~aA~~AGi~~i~v~  173 (209)
T d2o2xa1         159 MQAGKRAGLAQGWLV  173 (209)
T ss_dssp             HHHHHHTTCSEEEEE
T ss_pred             HHHHHHCCCcEEEEe
Confidence            99998 888887664

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.45  E-value=4.5e-13  Score=112.03  Aligned_cols=97  Identities=20%  Similarity=0.193  Sum_probs=76.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...+.|++.++++.|+ +|++++++||.+    +..+...|++.|+..|++.++.+++ ..+||++   +.....+++.|
T Consensus       107 ~~~~~~~~~~~L~~L~-~~~~l~i~Tn~~----~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~p---~~~~~~~~~~~  178 (247)
T d2gfha1         107 HMILADDVKAMLTELR-KEVRLLLLTNGD----RQTQREKIEACACQSYFDAIVIGGEQKEEKPAP---SIFYHCCDLLG  178 (247)
T ss_dssp             TCCCCHHHHHHHHHHH-TTSEEEEEECSC----HHHHHHHHHHHTCGGGCSEEEEGGGSSSCTTCH---HHHHHHHHHHT
T ss_pred             cCccCccHHHHHHHhh-cccceEEeeccc----chhhhhhhhhccccccccccccccccccchhhh---hhHHHHHHHhh
Confidence            4678999999999998 589999999998    7778888999999888776666555 5567754   33444566667


Q ss_pred             Cc--EEEEEcCCc-ccccccc-cCCcEEEe
Q 025360          221 YR--IWGNIGDQW-SDLQGEC-TGNRTFKL  246 (254)
Q Consensus       221 y~--i~~~IGDq~-sDi~ga~-~g~r~fkl  246 (254)
                      ..  .+++|||++ +|+.+|. +|.+++.+
T Consensus       179 ~~~~~~l~iGD~~~~Di~~A~~~G~~~~~~  208 (247)
T d2gfha1         179 VQPGDCVMVGDTLETDIQGGLNAGLKATVW  208 (247)
T ss_dssp             CCGGGEEEEESCTTTHHHHHHHTTCSEEEE
T ss_pred             cCHHhcceeccChHhHHHHHHHcCCeEEEE
Confidence            64  599999997 7999997 89986655

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.42  E-value=1.2e-13  Score=113.70  Aligned_cols=99  Identities=15%  Similarity=0.135  Sum_probs=75.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc-EEEecCC---CCCCCCcccHHHHHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER-LIMRTAA---DKGKNAVTYKSEIRKQLL  217 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~-lilr~~~---~~~kp~~~yK~~~r~~l~  217 (254)
                      ...++||+.++++.|+.   +.+++|+..    +......|+++|+..++. .+.+.++   ...||.+   ...+..++
T Consensus        83 ~~~~~~g~~~~L~~l~~---~~~i~t~~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~~~~KP~~---~~~~~~~~  152 (222)
T d2fdra1          83 DVKIIDGVKFALSRLTT---PRCICSNSS----SHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKP---DIFLHGAA  152 (222)
T ss_dssp             HCCBCTTHHHHHHHCCS---CEEEEESSC----HHHHHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSS---HHHHHHHH
T ss_pred             ccchhhhHHHHhhhccc---cceeeeecc----hhhhhhhhcccccccccceeecccccccccccccCH---HHHHHHHH
Confidence            47789999999887754   567999998    777888999999998764 3444432   3456644   33445666


Q ss_pred             HcCCc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          218 EEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       218 ~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                      +.|.+  .+++|||+..|+.+|+ +|.+++.+.+..
T Consensus       153 ~l~~~p~~~l~vgDs~~dv~aA~~aG~~~i~v~~~~  188 (222)
T d2fdra1         153 QFGVSPDRVVVVEDSVHGIHGARAAGMRVIGFTGAS  188 (222)
T ss_dssp             HHTCCGGGEEEEESSHHHHHHHHHTTCEEEEECCST
T ss_pred             hhCCCCceEEEEcCCHHHHHHHHHcCCEEEEEccCC
Confidence            66765  4999999999999998 899999987654

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=3.3e-13  Score=112.14  Aligned_cols=97  Identities=19%  Similarity=0.137  Sum_probs=77.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..++||+.++++.|+ +|++++++||.+    +......|+++|+..+++.++.+.+ ..+||++   +..+..+++.|.
T Consensus        99 ~~~~p~~~~~L~~l~-~~~~i~i~Sn~~----~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~---~~~~~~~~~l~~  170 (230)
T d1x42a1          99 GELYPEVVEVLKSLK-GKYHVGMITDSD----TEYLMAHLDALGIKDLFDSITTSEEAGFFKPHP---RIFELALKKAGV  170 (230)
T ss_dssp             CCBCTTHHHHHHHHB-TTBEEEEEESSC----HHHHHHHHHHHTCGGGCSEEEEHHHHTBCTTSH---HHHHHHHHHHTC
T ss_pred             CcccccHHHHHHHhh-ccCceeeeeccc----cccchhhhcccccccccccccccccccccchhh---HHHHHHHhhhcc
Confidence            568899999999996 579999999998    7778888999999988777776654 5567754   333345666676


Q ss_pred             c--EEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360          222 R--IWGNIGDQW-SDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       222 ~--i~~~IGDq~-sDi~ga~-~g~r~fklP  247 (254)
                      .  .+++|||+. +|+++|. +|.+++.++
T Consensus       171 ~p~~~l~vgD~~~~Di~~A~~~G~~~v~v~  200 (230)
T d1x42a1         171 KGEEAVYVGDNPVKDCGGSKNLGMTSILLD  200 (230)
T ss_dssp             CGGGEEEEESCTTTTHHHHHTTTCEEEEEC
T ss_pred             cccccceeecCcHhHHHHHHHcCCEEEEEC
Confidence            4  499999985 7999987 899998875

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=5.3e-14  Score=113.10  Aligned_cols=127  Identities=22%  Similarity=0.269  Sum_probs=83.6

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc----c----
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE----E----  172 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~----e----  172 (254)
                      +++|+||.||||.....+.         |....+      ....++||+.++|+.|+++|++++++||.++    .    
T Consensus         2 ~K~i~~D~DGtL~~~~~~~---------~~~~~~------~~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~   66 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSD---------FQVDRF------DKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQA   66 (161)
T ss_dssp             CEEEEECCBTTTBCCC--C---------CCCCSG------GGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHH
T ss_pred             CcEEEEeCCCCeEeeCCCC---------CccCCH------HHceECccHHHHHHHHHHcCCceeeecccccchhHHHHHH
Confidence            6899999999999764221         100111      1357899999999999999999999999752    1    


Q ss_pred             ---ccHHHHHHHHHhCCCCCCCcEEEecCC-----CCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccccc-cCC
Q 025360          173 ---TFGQVTRDNLHNQGFVGYERLIMRTAA-----DKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQGEC-TGN  241 (254)
Q Consensus       173 ---~~r~~T~~~L~~~G~~~~~~lilr~~~-----~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~  241 (254)
                         .......+.|...|+. .+.+++....     ..+||.+...   .+.+.+.|..  .+++|||+++|+++|. +|+
T Consensus        67 ~~~~~~~~l~~~l~~~~~~-~~~i~~~~~~~~~~~~~~KP~p~~~---~~~~~~~~id~~~~~~IGD~~~Di~aA~~aG~  142 (161)
T d2fpwa1          67 DFDGPHNLMMQIFTSQGVQ-FDEVLICPHLPADECDCRKPKVKLV---ERYLAEQAMDRANSYVIGDRATDIQLAENMGI  142 (161)
T ss_dssp             HHHHHHHHHHHHHHHTTCC-EEEEEEECCCGGGCCSSSTTSSGGG---GGGC----CCGGGCEEEESSHHHHHHHHHHTS
T ss_pred             Hhhhhhhhhhhhccccccc-cceeeeccccccccccccccccHHH---HHHHHhcCCChhcEEEECCCHHHHHHHHHcCC
Confidence               1123345677888886 4455554321     2357665222   2344555544  4999999999999998 788


Q ss_pred             cEEEe
Q 025360          242 RTFKL  246 (254)
Q Consensus       242 r~fkl  246 (254)
                      +++.+
T Consensus       143 ~~i~i  147 (161)
T d2fpwa1         143 NGLRY  147 (161)
T ss_dssp             EEEEC
T ss_pred             eEEEE
Confidence            87655

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=3.4e-13  Score=109.62  Aligned_cols=123  Identities=17%  Similarity=0.139  Sum_probs=83.0

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccc-------
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEET-------  173 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~-------  173 (254)
                      .+||+||.||||....+|..         ..         ....++||+.++++.|+++|++++++||++ .-       
T Consensus         2 ~~Av~~DrDGtl~~~~~y~~---------~~---------~~~~~~~gv~e~l~~L~~~g~~~~ivTNq~-~i~~~~~~~   62 (182)
T d2gmwa1           2 VPAIFLDRDGTINVDHGYVH---------EI---------DNFEFIDGVIDAMRELKKMGFALVVVTNQS-GIARGKFTE   62 (182)
T ss_dssp             BCEEEECSBTTTBCCCSSCC---------SG---------GGCCBCTTHHHHHHHHHHTTCEEEEEEECT-HHHHTSSCH
T ss_pred             CCEEEEeCCCCccCCCCCCC---------CH---------HHeeECCCHHHHHHHHhhcCchhhhhhccc-hhhhhhhHH
Confidence            57999999999976443221         11         135689999999999999999999999987 31       


Q ss_pred             -----cHHHHHHHHHhCCCCCCCcEEEecCC------------CCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccc
Q 025360          174 -----FGQVTRDNLHNQGFVGYERLIMRTAA------------DKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDL  234 (254)
Q Consensus       174 -----~r~~T~~~L~~~G~~~~~~lilr~~~------------~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi  234 (254)
                           ........+...|.. ......++..            ..+||.+   ..+...+++.+.  ..+++|||+++|+
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~-~~~~~~cp~~p~~~~~~~~~~~~~rKP~p---~m~~~~~~~~~i~~~~s~mVGDs~~Di  138 (182)
T d2gmwa1          63 AQFETLTEWMDWSLADRDVD-LDGIYYCPHHPQGSVEEFRQVCDCRKPHP---GMLLSARDYLHIDMAASYMVGDKLEDM  138 (182)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC-CSEEEEECCBTTCSSGGGBSCCSSSTTSC---HHHHHHHHHHTBCGGGCEEEESSHHHH
T ss_pred             Hhhhhhhhhhhhhhhhhccc-ccceeecccccccccccccccccccCCcc---ccccchhhhcccccccccccCCCHHHH
Confidence                 112233445566765 4455555432            1246544   444555666554  3599999999999


Q ss_pred             cccc-cCCcE-EEe
Q 025360          235 QGEC-TGNRT-FKL  246 (254)
Q Consensus       235 ~ga~-~g~r~-fkl  246 (254)
                      ++|+ +|..+ +.+
T Consensus       139 ~aA~~Ag~~~~~lv  152 (182)
T d2gmwa1         139 QAAVAANVGTKVLV  152 (182)
T ss_dssp             HHHHHTTCSEEEEE
T ss_pred             HHHHHhCCCcEEEE
Confidence            9987 78865 444

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.2e-13  Score=112.28  Aligned_cols=104  Identities=10%  Similarity=-0.099  Sum_probs=76.0

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcCC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEGY  221 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~Gy  221 (254)
                      ..+.|++.+++..|+++|++++++||......+..........|+..+++.++.+.+ ..+||.+   ......++..|.
T Consensus        98 ~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~fd~i~~s~~~~~~KP~~---~~~~~~~~~~~~  174 (225)
T d1zd3a1          98 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELKMHFDFLIESCQVGMVKPEP---QIYKFLLDTLKA  174 (225)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHHTTSSEEEEHHHHTCCTTCH---HHHHHHHHHHTC
T ss_pred             CCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChHhhccEEEeccccccchhHH---HHHHHHhhhccc
Confidence            468999999999999999999999997622223333334455567667666666554 5677754   333445666665


Q ss_pred             --cEEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          222 --RIWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       222 --~i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                        ..+++|||+.+|+.+|. +|.+++-+.++
T Consensus       175 ~p~e~l~VgD~~~Di~~A~~~G~~ti~v~~~  205 (225)
T d1zd3a1         175 SPSEVVFLDDIGANLKPARDLGMVTILVQDT  205 (225)
T ss_dssp             CGGGEEEEESCHHHHHHHHHTTCEEEECSSH
T ss_pred             CccceeEEecCHHHHHHHHHcCCEEEEECCc
Confidence              45899999999999988 89999988654

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.2e-13  Score=110.81  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=72.5

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC----cEEEecCCC-----CCCC--CcccH
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE----RLIMRTAAD-----KGKN--AVTYK  209 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~----~lilr~~~~-----~~kp--~~~yK  209 (254)
                      ....+.||+.+++++|+++|++++++||..    +...+..++.+|++.++    ++-+..++.     ...|  ....|
T Consensus        79 ~~~~l~pg~~~~i~~lk~~G~~~~ivS~~~----~~~v~~i~~~lgi~~~~v~an~~~~~~~G~~~g~~~~~p~~~~~~K  154 (217)
T d1nnla_          79 QPPHLTPGIRELVSRLQERNVQVFLISGGF----RSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGK  154 (217)
T ss_dssp             SCCCBCTTHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHH
T ss_pred             hccccCHHHHHHHHHHHhCCCEEEEECCCc----hHHHHHHHHHhCCcccceeeeeeeeeehhccccceeeeeeeccchH
Confidence            456788999999999999999999999998    77888899999998532    111121110     1111  12335


Q ss_pred             HHHHHHHH-HcCCcEEEEEcCCcccccccccCCcEEEe-CCCC
Q 025360          210 SEIRKQLL-EEGYRIWGNIGDQWSDLQGECTGNRTFKL-PNPM  250 (254)
Q Consensus       210 ~~~r~~l~-~~Gy~i~~~IGDq~sDi~ga~~g~r~fkl-PNp~  250 (254)
                      ....+.+. ..++..+++|||+.+|+..+......|.+ |||.
T Consensus       155 ~~~v~~~~~~~~~~~~~~vGDs~~Di~~~~~ag~~va~~~~~~  197 (217)
T d1nnla_         155 GKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVI  197 (217)
T ss_dssp             HHHHHHHHHHHCCSCEEEEESSHHHHTTTTTSSEEEEECSSCC
T ss_pred             HHHHHHHHhccCccccEEEEeCHhhHHHHHhCCceEEECCCHH
Confidence            44444443 35667799999999999998843344544 6764

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.41  E-value=8.7e-13  Score=109.62  Aligned_cols=97  Identities=12%  Similarity=0.028  Sum_probs=78.1

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...++|++.+.++.|+  |+.++++|+.+    +......+.+.|+..+++.++.+++ ..+||++   ...+..+++.|
T Consensus        91 ~~~~~~~~~~~L~~l~--~~~~~v~s~~~----~~~~~~~~~~~~~~~~fd~v~~s~~~~~~KP~p---~~f~~a~~~lg  161 (245)
T d1qq5a_          91 RLTPYPDAAQCLAELA--PLKRAILSNGA----PDMLQALVANAGLTDSFDAVISVDAKRVFKPHP---DSYALVEEVLG  161 (245)
T ss_dssp             SCCBCTTHHHHHHHHT--TSEEEEEESSC----HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTSH---HHHHHHHHHHC
T ss_pred             ccccchhhhHHHHHHh--hhceeEEeccc----hHHHHHHHhhcccccccccccccccccccCccH---HHHHHHHHHhC
Confidence            4688999999999884  78999999999    6677788899999988877777765 5668765   23334566777


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      .+  .|++|||+.+|+.+|+ +|++++.+.
T Consensus       162 ~~p~e~l~VgD~~~di~~A~~aG~~tv~v~  191 (245)
T d1qq5a_         162 VTPAEVLFVSSNGFDVGGAKNFGFSVARVA  191 (245)
T ss_dssp             CCGGGEEEEESCHHHHHHHHHHTCEEEEEC
T ss_pred             CChhhEEEEeCCHHHHHHHHHcCCeEEEEc
Confidence            65  4999999999999998 899999874

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=6.1e-13  Score=109.79  Aligned_cols=98  Identities=12%  Similarity=-0.017  Sum_probs=76.4

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEe--cCCCCCCCCcccHHHHHHHHHHcC
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMR--TAADKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr--~~~~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ..++||+.+++.+|+++|++++++||.+    +......+...|+..++..+..  +.....||++   ...+..+++.|
T Consensus       126 ~~~~pg~~e~l~~L~~~g~~l~i~Tn~~----~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~KP~p---~~~~~~~~~~~  198 (253)
T d1zs9a1         126 AEFFADVVPAVRKWREAGMKVYIYSSGS----VEAQKLLFGHSTEGDILELVDGHFDTKIGHKVES---ESYRKIADSIG  198 (253)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHTBTTBCCGGGCSEEECGGGCCTTCH---HHHHHHHHHHT
T ss_pred             cccCCCHHHHHHHHhhccCceeecCCCc----HHHHHHHHHHcCcchhhhhcceeeccccccCCCc---HHHHHHHHHhC
Confidence            4689999999999999999999999999    7777788888898766543222  2223467654   34444566667


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklP  247 (254)
                      ..  .+++|||+..|+.+|+ +|++++.+.
T Consensus       199 ~~p~~~l~vgD~~~dv~aA~~aG~~ti~v~  228 (253)
T d1zs9a1         199 CSTNNILFLTDVTREASAAEEADVHVAVVV  228 (253)
T ss_dssp             SCGGGEEEEESCHHHHHHHHHTTCEEEEEC
T ss_pred             CCcCcEEEEeCCHHHHHHHHHcCCEEEEEe
Confidence            64  5999999999999998 899999984

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=1.3e-13  Score=113.09  Aligned_cols=106  Identities=12%  Similarity=-0.075  Sum_probs=80.3

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG  220 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G  220 (254)
                      ...+.|++.+++..|+++|++++++|+.............+...|+..|++.++.+++ ..+||.+.   .....++..|
T Consensus        95 ~~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~---~~~~~~~~~~  171 (222)
T d1cr6a1          95 ARSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQ---IYNFLLDTLK  171 (222)
T ss_dssp             TCEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHGGGCSEEEEHHHHSCCTTCHH---HHHHHHHHHT
T ss_pred             cCCCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChHhhhceeeehhhccCCCCChH---HHHHHHHHhC
Confidence            3568999999999999999999999987522333444556777888888888877765 56677653   2333455555


Q ss_pred             Cc--EEEEEcCCcccccccc-cCCcEEEeCCCC
Q 025360          221 YR--IWGNIGDQWSDLQGEC-TGNRTFKLPNPM  250 (254)
Q Consensus       221 y~--i~~~IGDq~sDi~ga~-~g~r~fklPNp~  250 (254)
                      ..  .+++|||+.+|+.+|+ +|.+++.+.++.
T Consensus       172 v~p~~~l~IgD~~~Di~~A~~aG~~ti~V~~~~  204 (222)
T d1cr6a1         172 AKPNEVVFLDDFGSNLKPARDMGMVTILVHNTA  204 (222)
T ss_dssp             SCTTSEEEEESSSTTTHHHHHHTCEEEECCSSS
T ss_pred             CCcceEEEEECCHHHHHHHHHcCCEEEEECCcc
Confidence            54  5999999999999998 899999987764

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=99.37  E-value=6.1e-13  Score=102.37  Aligned_cols=76  Identities=16%  Similarity=0.261  Sum_probs=63.6

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCc---------
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDE---------  171 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~---------  171 (254)
                      +++++|||||||..+..       +  .|           ..+.|++++.++++.|++.|++|++.|+|..         
T Consensus         1 mK~i~~DiDGTI~~~~~-------~--~y-----------~~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~   60 (124)
T d1xpja_           1 MKKLIVDLDGTLTQANT-------S--DY-----------RNVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGK   60 (124)
T ss_dssp             CCEEEECSTTTTBCCCC-------S--CG-----------GGCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHH
T ss_pred             CCEEEEeCCCCeECCCC-------C--Cc-----------CccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHH
Confidence            46899999999987531       0  11           1468999999999999999999999999941         


Q ss_pred             --cccHHHHHHHHHhCCCCCCCcEEEec
Q 025360          172 --ETFGQVTRDNLHNQGFVGYERLIMRT  197 (254)
Q Consensus       172 --e~~r~~T~~~L~~~G~~~~~~lilr~  197 (254)
                        +..++.|++||++.|++ |++|+|+.
T Consensus        61 ~~~~~~~~T~~wL~~~gI~-Yd~Li~gK   87 (124)
T d1xpja_          61 INIHTLPIITEWLDKHQVP-YDEILVGK   87 (124)
T ss_dssp             HHHHTHHHHHHHHHHTTCC-CSEEEECC
T ss_pred             HHHHHHHHHHHHHHHcCCC-ceEEEECC
Confidence              45689999999999998 99999964

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=99.33  E-value=2e-13  Score=108.36  Aligned_cols=101  Identities=16%  Similarity=0.150  Sum_probs=74.4

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhC-CCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQ-GFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEE  219 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~-G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~  219 (254)
                      ...+.+++.+++..++++|++++++||.+    +......+.++ |+..+++.++.+++ ..+||.+   +..+..+++.
T Consensus        82 ~~~~~~~~~~l~~~l~~~~~~~~i~t~~~----~~~~~~~~~~~~~l~~~fd~v~~s~~~~~~Kp~~---~~~~~~~~~~  154 (197)
T d2b0ca1          82 FVALRPEVIAIMHKLREQGHRVVVLSNTN----RLHTTFWPEEYPEIRDAADHIYLSQDLGMRKPEA---RIYQHVLQAE  154 (197)
T ss_dssp             EEEECHHHHHHHHHHHHTTCEEEEEECCC----CCTTSCCGGGCHHHHHHCSEEEEHHHHTCCTTCH---HHHHHHHHHH
T ss_pred             ccccCchhHHHHHHHHhcCCeEEEEeCcc----HHHHHHHHHHcccchhhccceeecccccccccch---HHHHHHHHhc
Confidence            34788999999999999999999999987    23333344554 66556666665544 5566654   3334456666


Q ss_pred             CCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          220 GYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       220 Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      |..  .|++|||+.+|+.+|+ +|.+++.+.+|
T Consensus       155 ~~~~~~~l~vgDs~~di~~A~~aG~~ti~v~~~  187 (197)
T d2b0ca1         155 GFSPSDTVFFDDNADNIEGANQLGITSILVKDK  187 (197)
T ss_dssp             TCCGGGEEEEESCHHHHHHHHTTTCEEEECCST
T ss_pred             CCCCCeEEEEeCCHHHHHHHHHcCCEEEEECCC
Confidence            664  5999999999999987 89999998776

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=99.26  E-value=4.1e-12  Score=97.43  Aligned_cols=67  Identities=16%  Similarity=0.173  Sum_probs=58.1

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHH
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNL  182 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L  182 (254)
                      .|+|||||||.++.       ++               ....|+|+++++++.|+++|++|++.|+|. +..++.|++||
T Consensus         2 ti~vDiDGTl~~~~-------~~---------------~~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~-~~~~~~t~~wL   58 (122)
T d2obba1           2 TIAVDFDGTIVEHR-------YP---------------RIGEEIPFAVETLKLLQQEKHRLILWSVRE-GELLDEAIEWC   58 (122)
T ss_dssp             EEEECCBTTTBCSC-------TT---------------SCCCBCTTHHHHHHHHHHTTCEEEECCSCC-HHHHHHHHHHH
T ss_pred             EEEEEcCCCcCCCC-------CC---------------ccccccHHHHHHHHHHHHCCCeEEEEecCC-CcchHHHHHHH
Confidence            58999999998753       01               135699999999999999999999999999 99999999999


Q ss_pred             HhCCCCCCCcE
Q 025360          183 HNQGFVGYERL  193 (254)
Q Consensus       183 ~~~G~~~~~~l  193 (254)
                      +++|++ |+.+
T Consensus        59 ~~~~i~-yd~i   68 (122)
T d2obba1          59 RARGLE-FYAA   68 (122)
T ss_dssp             HTTTCC-CSEE
T ss_pred             HHcCCC-ceeh
Confidence            999998 6554

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=2.5e-11  Score=99.99  Aligned_cols=99  Identities=12%  Similarity=0.041  Sum_probs=67.6

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCC---cEEEecCC-----------CCCCCCcc
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYE---RLIMRTAA-----------DKGKNAVT  207 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~---~lilr~~~-----------~~~kp~~~  207 (254)
                      ..++.||+.++++.|+++|++++++||..    +..+...|+++|+..++   .+....+.           ..+++...
T Consensus        73 ~~~l~pg~~~~l~~L~~~g~~~~ivS~~~----~~~i~~~l~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~~  148 (226)
T d2feaa1          73 DAKIREGFREFVAFINEHEIPFYVISGGM----DFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGC  148 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEE----HHHHHHHHTTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCCSCCSS
T ss_pred             ccchhHHHHHHHHHHHhcccccccCCcch----hhhHHHHHHHcCCccceeeeeEEEeCCcceeccccccccccccCCHH
Confidence            46799999999999999999999999999    88888999999987543   11111111           11122223


Q ss_pred             cHHHHHHHHHHcCCcEEEEEcCCcccccccccCCcEEE
Q 025360          208 YKSEIRKQLLEEGYRIWGNIGDQWSDLQGECTGNRTFK  245 (254)
Q Consensus       208 yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fk  245 (254)
                      .+..+.+.+. .....+++|||+.+|+.+++...-.|.
T Consensus       149 ~~~~~~~~~~-~~~~~~i~iGDs~~Dl~~a~~A~~~~a  185 (226)
T d2feaa1         149 CKPSVIHELS-EPNQYIIMIGDSVTDVEAAKLSDLCFA  185 (226)
T ss_dssp             CHHHHHHHHC-CTTCEEEEEECCGGGHHHHHTCSEEEE
T ss_pred             HHHHHHHHhc-CCCceEEEEeCchhhHHHHHHCCEEEE
Confidence            3333222222 234679999999999999985445554

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.17  E-value=3.1e-11  Score=102.18  Aligned_cols=61  Identities=25%  Similarity=0.347  Sum_probs=50.8

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.++|+||+||||++.                           ..++|++.++++.|+++|.+++|+||+. ...+....
T Consensus         6 ~ik~vlFDlDGTL~~~---------------------------~~~i~~a~e~l~~l~~~g~~~~~~TN~~-~~~~~~~~   57 (261)
T d1vjra_           6 KIELFILDMDGTFYLD---------------------------DSLLPGSLEFLETLKEKNKRFVFFTNNS-SLGAQDYV   57 (261)
T ss_dssp             GCCEEEECCBTTTEET---------------------------TEECTTHHHHHHHHHHTTCEEEEEESCT-TSCHHHHH
T ss_pred             hCCEEEEeCCCeeEEC---------------------------CccCchHHHHHHHHHHcCCCEEEEeCCC-CCCHHHHH
Confidence            4789999999999975                           3467899999999999999999999987 65566677


Q ss_pred             HHHHhCCCC
Q 025360          180 DNLHNQGFV  188 (254)
Q Consensus       180 ~~L~~~G~~  188 (254)
                      +.+...|++
T Consensus        58 ~~~~~~g~~   66 (261)
T d1vjra_          58 RKLRNMGVD   66 (261)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHhhccc
Confidence            777777763

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.99  E-value=5.1e-10  Score=90.78  Aligned_cols=99  Identities=11%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             CCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH-HH-------HHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHH
Q 025360          143 CPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ-VT-------RDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRK  214 (254)
Q Consensus       143 ~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~-~T-------~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~  214 (254)
                      ..+.+++.+++    ..+..+.+.|+.. ..... .|       ...|...|+..|++.+..++...+||++   .....
T Consensus        96 ~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~Fd~v~~~~~~~~KP~p---~~f~~  167 (225)
T d2g80a1          96 APVYADAIDFI----KRKKRVFIYSSGS-VKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDINTSGKKTET---QSYAN  167 (225)
T ss_dssp             BCCCHHHHHHH----HHCSCEEEECSSC-HHHHHHHHHSBCCTTCTTSCCBCCGGGCCEEECHHHHCCTTCH---HHHHH
T ss_pred             ccchhhHHHHH----hhHHhhhhhhhcc-chhhhhhhhhhhhhHHHHHHhcCCccccceeeeccccCCCCCh---hHhHH
Confidence            44566666654    4567788888877 32221 11       1124566887888888877655567765   22333


Q ss_pred             HHHHcCCc--EEEEEcCCcccccccc-cCCcEEEeCCC
Q 025360          215 QLLEEGYR--IWGNIGDQWSDLQGEC-TGNRTFKLPNP  249 (254)
Q Consensus       215 ~l~~~Gy~--i~~~IGDq~sDi~ga~-~g~r~fklPNp  249 (254)
                      .+++.|..  .|++|||+.+|+.||+ +|++++.+.+|
T Consensus       168 ~~~~lg~~p~e~l~VgD~~~Dv~~A~~aG~~ti~v~r~  205 (225)
T d2g80a1         168 ILRDIGAKASEVLFLSDNPLELDAAAGVGIATGLASRP  205 (225)
T ss_dssp             HHHHHTCCGGGEEEEESCHHHHHHHHTTTCEEEEECCT
T ss_pred             HHHhcccCchhceeecCCHHHHHHHHHcCCEEEEEeCC
Confidence            56666665  5999999999999998 89999998654

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.88  E-value=3.4e-09  Score=84.67  Aligned_cols=103  Identities=13%  Similarity=-0.005  Sum_probs=65.0

Q ss_pred             CCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEecCCC-------CCC-CCcccHHHHH
Q 025360          142 GCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMRTAAD-------KGK-NAVTYKSEIR  213 (254)
Q Consensus       142 ~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr~~~~-------~~k-p~~~yK~~~r  213 (254)
                      ..++.+++.+++..++.+|..++++|+..    .......+.+.+...+....+.....       ... ..........
T Consensus        73 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (210)
T d1j97a_          73 RITPTEGAEETIKELKNRGYVVAVVSGGF----DIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILE  148 (210)
T ss_dssp             TCCBCTTHHHHHHHHHHTTCEEEEEEEEE----HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHHHHHHH
T ss_pred             hhhhhhhHHHHHHHHHHcCCEEEeecccc----cccccchhhccchhhhhhhhhccccccccccccccccccccccchhh
Confidence            57899999999999999999999999988    56666777777776533222211110       000 0111122333


Q ss_pred             HHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCCC
Q 025360          214 KQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       214 ~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPNp  249 (254)
                      ..++..+.  ..+++|||+.+|+....+....+.+ ||
T Consensus       149 ~~~~~~~~~~~~~i~iGDs~nDi~m~~~ag~~va~-na  185 (210)
T d1j97a_         149 KIAKIEGINLEDTVAVGDGANDISMFKKAGLKIAF-CA  185 (210)
T ss_dssp             HHHHHHTCCGGGEEEEESSGGGHHHHHHCSEEEEE-SC
T ss_pred             hHHHHhcccccceEEecCCcChHHHHHHCCCCEEE-CC
Confidence            33344343  3589999999999888733344444 54

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=98.85  E-value=7e-09  Score=87.09  Aligned_cols=68  Identities=19%  Similarity=0.361  Sum_probs=57.3

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||++.                           ..++|++.++++.|+++|++++|+||.+ ...++...+
T Consensus         3 ik~VifDlDGTL~~~---------------------------~~~i~~a~e~i~~l~~~g~~~~~~TN~~-~~~~~~~~~   54 (250)
T d2c4na1           3 IKNVICDIDGVLMHD---------------------------NVAVPGAAEFLHGIMDKGLPLVLLTNYP-SQTGQDLAN   54 (250)
T ss_dssp             CCEEEEECBTTTEET---------------------------TEECTTHHHHHHHHHHTTCCEEEEESCC-SCCHHHHHH
T ss_pred             CCEEEEECCCeeEEC---------------------------CCcCccHHHHHHHHHHCCCcEEEEeCCC-CCCHHHHHH
Confidence            689999999999874                           3467899999999999999999999988 777888889


Q ss_pred             HHHhCCCCCCCcEEEe
Q 025360          181 NLHNQGFVGYERLIMR  196 (254)
Q Consensus       181 ~L~~~G~~~~~~lilr  196 (254)
                      .|++.|++...+.++.
T Consensus        55 ~l~~~G~~~~~~~i~~   70 (250)
T d2c4na1          55 RFATAGVDVPDSVFYT   70 (250)
T ss_dssp             HHHHTTCCCCGGGEEE
T ss_pred             HHhhccccccceeEec
Confidence            9999999754443443

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=98.57  E-value=5.9e-08  Score=81.15  Aligned_cols=65  Identities=18%  Similarity=0.180  Sum_probs=51.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      ++.|+||+||||++..                          -...|.+.+.+++|+++|++++++|||+    .....+
T Consensus         4 iKli~~DlDGTL~~~~--------------------------~~i~~~~~~al~~L~~~gi~v~i~TGR~----~~~~~~   53 (271)
T d1rkqa_           4 IKLIAIDMDGTLLLPD--------------------------HTISPAVKNAIAAARARGVNVVLTTGRP----YAGVHN   53 (271)
T ss_dssp             CCEEEECCCCCCSCTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEECSSC----GGGTHH
T ss_pred             eeEEEEeCCccccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC----HHHHHH
Confidence            6789999999999752                          2244888999999999999999999999    556667


Q ss_pred             HHHhCCCCCCCcEEE
Q 025360          181 NLHNQGFVGYERLIM  195 (254)
Q Consensus       181 ~L~~~G~~~~~~lil  195 (254)
                      .+++.++......++
T Consensus        54 ~~~~l~l~~~~~~~i   68 (271)
T d1rkqa_          54 YLKELHMEQPGDYCI   68 (271)
T ss_dssp             HHHHTTCCSTTCEEE
T ss_pred             HHHHhcCcCCCcEEE
Confidence            778888874434333

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.53  E-value=7.6e-08  Score=78.84  Aligned_cols=124  Identities=16%  Similarity=0.105  Sum_probs=76.0

Q ss_pred             CCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCC-CchHHHHHHHHHHHCCCeEEEEeCCCc------
Q 025360           99 DGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCP-AIPGVLVLFNKLIESGLKVILVTGRDE------  171 (254)
Q Consensus        99 ~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~-~~pg~~ell~~L~~~G~~i~~vTgR~~------  171 (254)
                      ...++++||.||||......        ..|-..       ...-. ..|++.+.++.|.++|+.|+++||-++      
T Consensus        19 ~~~Kia~fDrDGtLik~~~~--------~~~~~~-------~~d~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~gI~rg~~   83 (195)
T d1yj5a1          19 PQGKVAAFDLDGTLITTRSG--------KVFPTS-------PSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIGRGKL   83 (195)
T ss_dssp             CCSCEEEECSBTTTEECSSS--------CSSCSS-------TTCCEESCTTHHHHHHHHHHHTCEEEEEEECHHHHHTSS
T ss_pred             CcCcEEEEECCCceEeeCCC--------CcCCCC-------hhhceeccCCHHHHHHHHHhCCcEEEEecCcchhccCCc
Confidence            45689999999999865311        111100       00112 469999999999999999999999642      


Q ss_pred             --cccHHHHHHHHHhCCCCCCCcEEEecCC-CCCCCCcccHHHHHHHHHHcC------CcEEEEEcCCc-----------
Q 025360          172 --ETFGQVTRDNLHNQGFVGYERLIMRTAA-DKGKNAVTYKSEIRKQLLEEG------YRIWGNIGDQW-----------  231 (254)
Q Consensus       172 --e~~r~~T~~~L~~~G~~~~~~lilr~~~-~~~kp~~~yK~~~r~~l~~~G------y~i~~~IGDq~-----------  231 (254)
                        +...+.....++++|.+  ..++..... .-+||.+   -++...+.+..      ..-+.+|||+.           
T Consensus        84 s~~~~~~~~~~i~~~l~~~--~~i~~~~~~~~~RKP~~---GM~~~~~~~~n~~~~id~~~S~~IGD~~gr~~~~~~~~~  158 (195)
T d1yj5a1          84 PAEVFKGKVEAVLEKLGVP--FQVLVATHAGLNRKPVS---GMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRK  158 (195)
T ss_dssp             CHHHHHHHHHHHHHHHTSC--CEEEEECSSSSSSTTST---HHHHHHHHTSSSSCCCCGGGCEEECSCCCBCTTSBTTBC
T ss_pred             CHHHHHHHHHHHHHHcCCC--ccEEEecCccccCCCcc---HHHHHHHHHhcccccCCcCceEEEeCccCcccccccccc
Confidence              22233345566677876  345666554 4567644   22222333321      23488999975           


Q ss_pred             ------ccccccc-cCCc
Q 025360          232 ------SDLQGEC-TGNR  242 (254)
Q Consensus       232 ------sDi~ga~-~g~r  242 (254)
                            +|++-|. +|.+
T Consensus       159 ~~D~S~sD~~fA~N~gik  176 (195)
T d1yj5a1         159 KKDFSCADRLFALNVGLP  176 (195)
T ss_dssp             SCCSCCHHHHHHHHHTCC
T ss_pred             ccCcchhHHHHHHHCCCc
Confidence                  6777665 5655

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=9.2e-07  Score=71.18  Aligned_cols=126  Identities=10%  Similarity=-0.079  Sum_probs=79.1

Q ss_pred             CceEEEecCCccccchhhhhh---hccCCC---------CCC-hH--------HHHHHHH---h----CCCCCchHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKG---KRYGCD---------PYD-PA--------GFRAWAL---K----GGCPAIPGVLVL  152 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~---~~~g~~---------~~~-~~--------~~~~~~~---~----~~~~~~pg~~el  152 (254)
                      +-.|.+||||||+|....+.+   ..++..         .|. .+        ....+..   .    ...+|+||+.++
T Consensus         3 ~mrI~iDmDGVL~Df~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~ff~~L~p~~gA~e~   82 (195)
T d1q92a_           3 ALRVLVDMDGVLADFEGGFLRKFRARFPDQPFIALEDRRGFWVSEQYGRLRPGLSEKAISIWESKNFFFELEPLPGAVEA   82 (195)
T ss_dssp             CEEEEECSBTTTBCHHHHHHHHHHHHCTTSCCCCGGGCCSSCHHHHHHHHSTTHHHHHHHHHTSTTTTTTCCBCTTHHHH
T ss_pred             ccEEEEECCCccccCHHHHHHHHHHHcCCccccChhhhccchhHHHhCCCcHHHHHHHHHHhhhhhHHhhCCcccCHHHH
Confidence            445899999999997765433   123321         111 11        1122221   1    467999999999


Q ss_pred             HHHHHHCC-CeEEEEeCCCccc---cHHHHHHHHHhCCCC-CCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEE
Q 025360          153 FNKLIESG-LKVILVTGRDEET---FGQVTRDNLHNQGFV-GYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNI  227 (254)
Q Consensus       153 l~~L~~~G-~~i~~vTgR~~e~---~r~~T~~~L~~~G~~-~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~I  227 (254)
                      ++.|++.| +.++++|+++ ..   +...+..||+++..+ .+..++++.+  +..                 +..-+.|
T Consensus        83 l~~L~~~~~~~v~i~t~~~-~~~~~~~~~k~~Wl~~~~~~~~~~~~~~t~~--K~~-----------------~~~d~lI  142 (195)
T d1q92a_          83 VKEMASLQNTDVFICTSPI-KMFKYCPYEKYAWVEKYFGPDFLEQIVLTRD--KTV-----------------VSADLLI  142 (195)
T ss_dssp             HHHHHHSTTEEEEEEECCC-SCCSSHHHHHHHHHHHHHCGGGGGGEEECSC--STT-----------------SCCSEEE
T ss_pred             HHHHhhccCccceEEcccc-ccCcchHHHHHHHHHHhcCCCCccEEEEccc--cce-----------------ecCeEEe
Confidence            99999876 5789999997 43   346788999998332 2456777542  110                 0112579


Q ss_pred             cCCcccccccc-cCCcEEEe
Q 025360          228 GDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       228 GDq~sDi~ga~-~g~r~fkl  246 (254)
                      +|++.-+.... +|..++..
T Consensus       143 DD~p~n~~~~~~~g~~~il~  162 (195)
T d1q92a_         143 DDRPDITGAEPTPSWEHVLF  162 (195)
T ss_dssp             ESCSCCCCSCSSCSSEEEEE
T ss_pred             cCcHHHHHHHhcCCCeEEEE
Confidence            99997665544 67777754

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.52  E-value=9.2e-08  Score=80.41  Aligned_cols=59  Identities=17%  Similarity=0.178  Sum_probs=49.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      ++.|+|||||||++..                          ...-+.+.+.+++|+++|++++++|||+    ...+..
T Consensus         1 iKli~~DlDGTLl~~~--------------------------~~i~~~~~~~l~~l~~~Gi~~~i~TGR~----~~~~~~   50 (285)
T d1nrwa_           1 MKLIAIDLDGTLLNSK--------------------------HQVSLENENALRQAQRDGIEVVVSTGRA----HFDVMS   50 (285)
T ss_dssp             CCEEEEECCCCCSCTT--------------------------SCCCHHHHHHHHHHHHTTCEEEEECSSC----HHHHHH
T ss_pred             CeEEEEECCccccCCC--------------------------CccCHHHHHHHHHHHHCCCEEEEECCCC----HHHHHH
Confidence            3679999999999752                          2245889999999999999999999999    777888


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++++|++.
T Consensus        51 ~~~~l~~~~   59 (285)
T d1nrwa_          51 IFEPLGIKT   59 (285)
T ss_dssp             HHGGGTCCC
T ss_pred             HHHHhCCCc
Confidence            888888864

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=98.49  E-value=1.3e-07  Score=76.38  Aligned_cols=58  Identities=16%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      +--|++||||||++..                          ....+.+.+.+++|+++|+.++++|||+    ......
T Consensus         4 ~~li~~DlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~Gi~~~i~TGR~----~~~~~~   53 (232)
T d1xvia_           4 PLLVFSDLDGTLLDSH--------------------------SYDWQPAAPWLTRLREANVPVILCSSKT----SAEMLY   53 (232)
T ss_dssp             CEEEEEECTTTTSCSS--------------------------CCSCCTTHHHHHHHHHTTCCEEEECSSC----HHHHHH
T ss_pred             CEEEEEECCCCccCCc--------------------------CcCCHHHHHHHHHHHHCCCEEEEEeCCC----hhhchh
Confidence            3457779999999753                          2244667899999999999999999999    677777


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .+.++|+.
T Consensus        54 ~~~~~~~~   61 (232)
T d1xvia_          54 LQKTLGLQ   61 (232)
T ss_dssp             HHHHTTCT
T ss_pred             HHHHhccC
Confidence            88888875

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.48  E-value=7e-08  Score=80.74  Aligned_cols=55  Identities=20%  Similarity=0.308  Sum_probs=45.7

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||++.                           ..++|++.+.++.|++.|++++++||++ ...+....+
T Consensus         2 yk~v~fDlDGTL~~~---------------------------~~~i~~a~~~i~~l~~~g~~~~~~Tn~s-~~~~~~~~~   53 (253)
T d1yv9a1           2 YQGYLIDLDGTIYLG---------------------------KEPIPAGKRFVERLQEKDLPFLFVTNNT-TKSPETVAQ   53 (253)
T ss_dssp             CCEEEECCBTTTEET---------------------------TEECHHHHHHHHHHHHTTCCEEEEECCC-SSCHHHHHH
T ss_pred             CCEEEEcCCCccEeC---------------------------CCcCccHHHHHHHHHHCCCCEEEEeCCC-CCCHHHHHH
Confidence            479999999999875                           3367999999999999999999999988 655666655


Q ss_pred             HHH
Q 025360          181 NLH  183 (254)
Q Consensus       181 ~L~  183 (254)
                      .|.
T Consensus        54 ~L~   56 (253)
T d1yv9a1          54 RLA   56 (253)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.46  E-value=1.8e-07  Score=75.59  Aligned_cols=59  Identities=20%  Similarity=0.156  Sum_probs=45.6

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      +.+.|+||+||||+++.                          ....+.+.+.+++|+++|++++++|||+    .....
T Consensus         1 kiK~i~~D~DGTL~~~~--------------------------~~i~~~~~~~l~~l~~~gi~v~~~TGR~----~~~~~   50 (230)
T d1wr8a_           1 KIKAISIDIDGTITYPN--------------------------RMIHEKALEAIRRAESLGIPIMLVTGNT----VQFAE   50 (230)
T ss_dssp             CCCEEEEESTTTTBCTT--------------------------SCBCHHHHHHHHHHHHTTCCEEEECSSC----HHHHH
T ss_pred             CceEEEEecCCCCcCCC--------------------------CccCHHHHHHHHHHHhCCCeEEEEeCCc----HHHHH
Confidence            36899999999999753                          3355788999999999999999999999    44444


Q ss_pred             HHHHhCCCC
Q 025360          180 DNLHNQGFV  188 (254)
Q Consensus       180 ~~L~~~G~~  188 (254)
                      ..+...++.
T Consensus        51 ~~~~~~~~~   59 (230)
T d1wr8a_          51 AASILIGTS   59 (230)
T ss_dssp             HHHHHHTCC
T ss_pred             HHHHhcCCC
Confidence            444444444

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.42  E-value=1.4e-07  Score=77.08  Aligned_cols=57  Identities=14%  Similarity=0.164  Sum_probs=46.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      ++.|++||||||++..                          .  .+.+.+.++.|+++|++++++|||+    ...+..
T Consensus         2 iKli~~DlDGTLl~~~--------------------------~--~~~~~~ai~~l~~~G~~~~~aTGR~----~~~~~~   49 (243)
T d1wzca1           2 IRLIFLDIDKTLIPGY--------------------------E--PDPAKPIIEELKDMGFEIIFNSSKT----RAEQEY   49 (243)
T ss_dssp             EEEEEECCBTTTBSSS--------------------------C--SGGGHHHHHHHHHTTEEEEEECSSC----HHHHHH
T ss_pred             cEEEEEeCCCCCCCCC--------------------------C--CHHHHHHHHHHHHCCCEEEEEeCCC----HHHHHH
Confidence            3689999999999642                          1  1346788999999999999999999    777777


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++..|+..
T Consensus        50 ~~~~~~~~~   58 (243)
T d1wzca1          50 YRKELEVET   58 (243)
T ss_dssp             HHHHHTCCS
T ss_pred             HHHHhcccc
Confidence            888887763

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=98.42  E-value=9.6e-08  Score=79.86  Aligned_cols=60  Identities=13%  Similarity=0.189  Sum_probs=49.2

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.|+|||||||+++.                         ....-|.+.+.++.|+++|+.++++|||+    ...+..
T Consensus         2 IKli~~DlDGTLl~~~-------------------------~~~~~~~~~~~l~~l~~~gi~~~i~TGR~----~~~~~~   52 (269)
T d1rlma_           2 VKVIVTDMDGTFLNDA-------------------------KTYNQPRFMAQYQELKKRGIKFVVASGNQ----YYQLIS   52 (269)
T ss_dssp             CCEEEECCCCCCSCTT-------------------------SCCCHHHHHHHHHHHHHHTCEEEEECSSC----HHHHGG
T ss_pred             EEEEEEeCCccCcCCC-------------------------CcCChHHHHHHHHHHHHCCCEEEEEcCCC----HHHHHH
Confidence            4689999999999753                         22344789999999999999999999999    777777


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++++++..
T Consensus        53 ~~~~l~~~~   61 (269)
T d1rlma_          53 FFPELKDEI   61 (269)
T ss_dssp             GCTTTTTTS
T ss_pred             HHHHhCccc
Confidence            788877763

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=98.36  E-value=2.2e-07  Score=77.81  Aligned_cols=60  Identities=22%  Similarity=0.285  Sum_probs=47.9

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .++|+||+||||.+.                           ..++|++.++++.|+++|++++++||+. ...++...+
T Consensus         2 yk~vlFDlDGTL~~~---------------------------~~~i~~a~e~l~~l~~~g~~~~~~TN~s-~~~~~~~~~   53 (253)
T d1wvia_           2 YKGYLIDLDGTIYKG---------------------------KDRIPAGEDFVKRLQERQLPYILVTNNT-TRTPEMVQE   53 (253)
T ss_dssp             CCEEEEECBTTTEET---------------------------TEECHHHHHHHHHHHHHTCCEEEEECCC-SSCHHHHHH
T ss_pred             cCEEEEcCcCceEEC---------------------------CCcCccHHHHHHHHHHCCCCEEEEeCCC-CCCHHHHHH
Confidence            579999999999874                           3368999999999999999999999987 555666666


Q ss_pred             HHHh-CCCC
Q 025360          181 NLHN-QGFV  188 (254)
Q Consensus       181 ~L~~-~G~~  188 (254)
                      .|.. .|+.
T Consensus        54 ~l~~~~~~~   62 (253)
T d1wvia_          54 MLATSFNIK   62 (253)
T ss_dssp             HHHHHHSCC
T ss_pred             HHHhhcCcc
Confidence            6643 3553

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.35  E-value=3.5e-06  Score=66.38  Aligned_cols=102  Identities=11%  Similarity=0.104  Sum_probs=60.9

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCCCC---CCCCcccHHHHHHH
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAADK---GKNAVTYKSEIRKQ  215 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~~~---~kp~~~yK~~~r~~  215 (254)
                      ......++...+...+ ..++.++++|+-.    ...+.......++..+..  +........   ..+....+....+.
T Consensus        66 ~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  140 (206)
T d1rkua_          66 ATLKPLEGAVEFVDWL-RERFQVVILSDTF----YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIA  140 (206)
T ss_dssp             TTCCCCTTHHHHHHHH-HTTSEEEEEEEEE----HHHHHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHHHHH
T ss_pred             hhccccchHHHHHHHh-hcCceEEEeccCc----hHHHHHHHHHhCCchhhcceeeeecccccccccccchhhHHHHHHH
Confidence            3456777877777665 5789999999887    677777888888865432  222222111   01111112222222


Q ss_pred             HHHcCCcEEEEEcCCcccccccccCCcEEEeCCC
Q 025360          216 LLEEGYRIWGNIGDQWSDLQGECTGNRTFKLPNP  249 (254)
Q Consensus       216 l~~~Gy~i~~~IGDq~sDi~ga~~g~r~fklPNp  249 (254)
                       .....+.+++|||+.||+.--......+.. ||
T Consensus       141 -~~i~~~eviaiGDg~NDi~Ml~~Ag~gIAm-na  172 (206)
T d1rkua_         141 -FKSLYYRVIAAGDSYNDTTMLSEAHAGILF-HA  172 (206)
T ss_dssp             -HHHTTCEEEEEECSSTTHHHHHHSSEEEEE-SC
T ss_pred             -hcccccceEEecCCccCHHHHHhCCccEEE-CC
Confidence             223456799999999999877744355555 54

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.32  E-value=2.6e-07  Score=82.60  Aligned_cols=96  Identities=23%  Similarity=0.206  Sum_probs=69.6

Q ss_pred             CCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCc--EEEecCC------------CCCCCCcccH
Q 025360          144 PAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYER--LIMRTAA------------DKGKNAVTYK  209 (254)
Q Consensus       144 ~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~--lilr~~~------------~~~kp~~~yK  209 (254)
                      +|.||+.++++.|+++|++++++||++    +..+...|+++|+..|++  .++..++            ..+||.+   
T Consensus       215 ~p~~~v~~~l~~lk~aGi~v~i~Tg~~----~~~a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~KP~p---  287 (380)
T d1qyia_         215 RPVDEVKVLLNDLKGAGFELGIATGRP----YTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLGKPNP---  287 (380)
T ss_dssp             SCHHHHHHHHHHHHHTTCEEEEECSSC----HHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCCTTST---
T ss_pred             cchhhHHHHHHHHHHCCCeEEEECCCC----HHHHHHHHHHcCCcccCCcceEEecchhhhhhhhccccccccCCCh---
Confidence            478899999999999999999999999    888899999999987653  2443221            3445544   


Q ss_pred             HHHHHHHHH--------------cC--CcEEEEEcCCcccccccc-cCCcEEEe
Q 025360          210 SEIRKQLLE--------------EG--YRIWGNIGDQWSDLQGEC-TGNRTFKL  246 (254)
Q Consensus       210 ~~~r~~l~~--------------~G--y~i~~~IGDq~sDi~ga~-~g~r~fkl  246 (254)
                      ......+..              .+  -..|++|||+.+|+.+++ +|.+++.+
T Consensus       288 ~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~vGD~~~D~~aak~Ag~~~Igv  341 (380)
T d1qyia_         288 FSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADLLSAQKIGATFIGT  341 (380)
T ss_dssp             HHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHHHHHHHHTCEEEEE
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHHCCCCEEEE
Confidence            111222221              11  235999999999999998 67766665

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=98.29  E-value=4.1e-07  Score=75.88  Aligned_cols=58  Identities=19%  Similarity=0.242  Sum_probs=44.7

Q ss_pred             cCCCCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHH
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQ  176 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~  176 (254)
                      ++...+.|+||+||||+...                         ....-|.+++.+++|+++|++++++|||+    ..
T Consensus         6 ~~~~ikli~~DlDGTLl~~~-------------------------~~~i~~~~~~al~~l~~~Gi~v~i~TGR~----~~   56 (283)
T d2b30a1           6 KGADIKLLLIDFDGTLFVDK-------------------------DIKVPSENIDAIKEAIEKGYMVSICTGRS----KV   56 (283)
T ss_dssp             TTCCCCEEEEETBTTTBCCT-------------------------TTCSCHHHHHHHHHHHHHTCEEEEECSSC----HH
T ss_pred             cccCccEEEEECCCCCcCCC-------------------------CCcCCHHHHHHHHHHHHCCCEEEEEcCCC----HH
Confidence            34557899999999998532                         23456889999999999999999999999    44


Q ss_pred             HHHHHHH
Q 025360          177 VTRDNLH  183 (254)
Q Consensus       177 ~T~~~L~  183 (254)
                      .....+.
T Consensus        57 ~~~~~~~   63 (283)
T d2b30a1          57 GILSAFG   63 (283)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            4444333

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.26  E-value=5.6e-07  Score=73.44  Aligned_cols=58  Identities=17%  Similarity=0.070  Sum_probs=45.0

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      .+.++||+||||+++.                          ...-+++.+.++.|++.|++++++|||+    ......
T Consensus         3 iKli~~D~DGTL~~~~--------------------------~~i~~~~~~al~~l~~~g~~v~~~TGr~----~~~~~~   52 (225)
T d1l6ra_           3 IRLAAIDVDGNLTDRD--------------------------RLISTKAIESIRSAEKKGLTVSLLSGNV----IPVVYA   52 (225)
T ss_dssp             CCEEEEEHHHHSBCTT--------------------------SCBCHHHHHHHHHHHHTTCEEEEECSSC----HHHHHH
T ss_pred             eEEEEEecCCCCcCCC--------------------------CcCCHHHHHHHHHHHHCCCEEEEEcCCc----hhhhHH
Confidence            4689999999999763                          3455789999999999999999999999    444344


Q ss_pred             HHHhCCCC
Q 025360          181 NLHNQGFV  188 (254)
Q Consensus       181 ~L~~~G~~  188 (254)
                      .....|+.
T Consensus        53 ~~~~~~~~   60 (225)
T d1l6ra_          53 LKIFLGIN   60 (225)
T ss_dssp             HHHHHTCC
T ss_pred             HHHHcCCC
Confidence            44445554

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=5.7e-07  Score=72.73  Aligned_cols=44  Identities=23%  Similarity=0.194  Sum_probs=37.5

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      |++-++|||||||++..                          ....|.+.+.+++|+++|. ++++|||.
T Consensus         2 ~~kl~~fDlDGTLl~~~--------------------------~~i~~~~~~al~~l~~~g~-~~i~Tgr~   45 (243)
T d2amya1           2 GPALCLFDVDGTLTAPR--------------------------QKITKEMDDFLQKLRQKIK-IGVVGGSD   45 (243)
T ss_dssp             CSEEEEEESBTTTBCTT--------------------------SCCCHHHHHHHHHHTTTSE-EEEECSSC
T ss_pred             CCEEEEEcCcCCeeCCC--------------------------CcCCHHHHHHHHHHHcCCC-EEEEcCCC
Confidence            68889999999999752                          3456889999999998885 88999998

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=5.5e-06  Score=71.46  Aligned_cols=94  Identities=18%  Similarity=0.144  Sum_probs=63.1

Q ss_pred             CCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHHhCCCCCCCcEEEe------cCCC----CC-CCCcccH
Q 025360          141 GGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLHNQGFVGYERLIMR------TAAD----KG-KNAVTYK  209 (254)
Q Consensus       141 ~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~~~G~~~~~~lilr------~~~~----~~-kp~~~yK  209 (254)
                      ......||+.+|++.|+++|++++++||.-    ....+..|+++|++...--+..      ++..    .+ -.....|
T Consensus       132 ~~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~----~~~ie~vl~~lg~~~~ni~I~sN~l~f~~~~~~~~~~~~~i~~~~K  207 (291)
T d2bdua1         132 SDVMLKEGYENFFGKLQQHGIPVFIFSAGI----GDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNK  207 (291)
T ss_dssp             SCCCBCBTHHHHHHHHHHHTCCEEEEEEEE----HHHHHHHHHHTTCCBTTEEEEEECEEECTTSBEEEECSSCCCTTCH
T ss_pred             cCCCcccCHHHHHHHHHHcCCeEEEEcCCh----HHHHHHHHHHcCCCccCceEEeeEEEEeCCeeEeeccCCccccccC
Confidence            457788999999999999999999999988    7888899999999732111221      1111    11 1122334


Q ss_pred             HHHHHH-----HHHcCCcEEEEEcCCcccccccc
Q 025360          210 SEIRKQ-----LLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       210 ~~~r~~-----l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      .+....     -...++..++++||+.+|+..+.
T Consensus       208 ~~~~~~~~~~~~~~~~~~~vI~iGDs~~Dl~Ma~  241 (291)
T d2bdua1         208 HDGALKNTDYFSQLKDNSNIILLGDSQGDLRMAD  241 (291)
T ss_dssp             HHHHHTTHHHHHHTTTCCEEEEEESSSGGGGTTT
T ss_pred             cchhhhhHHHHhccCCcCcEEEEeCCHhHHHHHh
Confidence            322111     11135667899999999998776

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.23  E-value=6e-07  Score=74.86  Aligned_cols=44  Identities=25%  Similarity=0.350  Sum_probs=37.0

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      |+|+|||||||++..                         ....-+.+.+.+++|+++|++++++|||+
T Consensus         2 k~if~DlDGTL~~~~-------------------------~~~i~~~~~~al~~l~~~gi~v~~~TGR~   45 (260)
T d2rbka1           2 KALFFDIDGTLVSFE-------------------------THRIPSSTIEALEAAHAKGLKIFIATGRP   45 (260)
T ss_dssp             CEEEECSBTTTBCTT-------------------------TSSCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEEECCCCCcCCC-------------------------CCCCCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            689999999999752                         12344678899999999999999999997

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=98.20  E-value=1.1e-06  Score=70.50  Aligned_cols=118  Identities=18%  Similarity=0.287  Sum_probs=73.4

Q ss_pred             CCceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHH
Q 025360          100 GMDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTR  179 (254)
Q Consensus       100 ~~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~  179 (254)
                      ..+.+|||+||+++|+.-++...+---..|+.              ..+  .-++.|++.|+.++++|++.    ...+.
T Consensus         4 ~ik~~i~DvDGVlTDG~v~~~~dG~e~k~F~~--------------~Dg--~gi~~l~~~gi~~~iis~~~----~~~v~   63 (177)
T d1k1ea_           4 NIKFVITDVDGVLTDGQLHYDANGEAIKSFHV--------------RDG--LGIKMLMDADIQVAVLSGRD----SPILR   63 (177)
T ss_dssp             GCCEEEEECTTTTSCSEEEEETTEEEEEEEEH--------------HHH--HHHHHHHHTTCEEEEEESCC----CHHHH
T ss_pred             cCeEEEEccCCcccCCeEEEeCCCCEEEEEEC--------------cch--HHHHHHhhhcEEEEEecCCc----hhHHH
Confidence            36789999999999876555432200001211              111  13778899999999999999    67777


Q ss_pred             HHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCC--cEEEEEcCCcccccccccCCcEEEeCC
Q 025360          180 DNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWSDLQGECTGNRTFKLPN  248 (254)
Q Consensus       180 ~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~sDi~ga~~g~r~fklPN  248 (254)
                      ....+.++..    ++.+..+  |     ...+++-++..|.  ..+++|||..+|+..-......|...|
T Consensus        64 ~~~~~l~~~~----~~~~~~~--K-----~~~l~~~~~~~~i~~~~v~~vGDd~nDl~~l~~~g~siap~n  123 (177)
T d1k1ea_          64 RRIADLGIKL----FFLGKLE--K-----ETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFAVAD  123 (177)
T ss_dssp             HHHHHHTCCE----EEESCSC--H-----HHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEECTT
T ss_pred             HHHhhhcccc----ccccccc--H-----HHHHHHHHHHhcCCcceeEEecCCccHHHHHhhCCeEEEcCC
Confidence            7888888852    2222111  1     1233334455565  469999999999977663224444443

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=97.90  E-value=3.9e-05  Score=60.68  Aligned_cols=107  Identities=20%  Similarity=0.141  Sum_probs=75.2

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      ..++||.+||++-+.                         -+|+.|++.+.++.|++.|+++.++||-.    ...+...
T Consensus         3 ~~~~~d~~~~~~~~~-------------------------~Dp~R~~~~~~I~~l~~~GI~v~miTGD~----~~tA~~i   53 (168)
T d1wpga2           3 SVICSDKTGTLTTNQ-------------------------LDPPRKEVMGSIQLCRDAGIRVIMITGDN----KGTAIAI   53 (168)
T ss_dssp             CEEEECCTTTTBCCC-------------------------ECCBCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHH
T ss_pred             EEEEECCccEEEEEe-------------------------cCCCchhHHHHHHHHHHCcCEEEEECCCC----HHHHHHH
Confidence            367899999998763                         26899999999999999999999999988    5566666


Q ss_pred             HHhCCCCCCCc----EEEecCC-C----------------CCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          182 LHNQGFVGYER----LIMRTAA-D----------------KGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       182 L~~~G~~~~~~----lilr~~~-~----------------~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      =++.|+..-..    ..+.+.+ +                -..-.+.-|..+-+.+++.|+ .++++||..+|..+-+
T Consensus        54 a~~~Gi~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~ar~~p~~K~~lv~~l~~~g~-~Va~vGDG~nD~~AL~  130 (168)
T d1wpga2          54 CRRIGIFGENEEVADRAYTGREFDDLPLAEQREACRRACCFARVEPSHKSKIVEYLQSYDE-ITAMTGDGVNDAPALK  130 (168)
T ss_dssp             HHHTTSSCTTCCCTTTEEEHHHHHHSCHHHHHHHHHHCCEEESCCHHHHHHHHHHHHHTTC-CEEEEECSGGGHHHHH
T ss_pred             HHHcCCCCCccccccccccccccchhhHHHHhhhhhhhhhhhccchhHHHHHHHHHHhccc-ceeEEecCCCCHHHHH
Confidence            67788853211    0111100 0                000013456777778888885 5788999999986655

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.90  E-value=1.2e-05  Score=61.57  Aligned_cols=96  Identities=19%  Similarity=0.128  Sum_probs=67.4

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      .+++||-+||+.-..                         .+++-|++.+.++.|++.|+++.++||..    ...+...
T Consensus         4 ~~~~~d~~~~~~~g~-------------------------~D~lr~~a~~~I~~L~~~Gi~v~ilTGD~----~~~a~~i   54 (135)
T d2b8ea1           4 TAVIFDKTGTLTKGK-------------------------PDTLKESAKPAVQELKRMGIKVGMITGDN----WRSAEAI   54 (135)
T ss_dssp             CEEEEECCCCCBCSC-------------------------CCCBCTTHHHHHHHHHHTTCEEEEECSSC----HHHHHHH
T ss_pred             EEEEECCceEEEEec-------------------------CCCCCccHHHHHHHHHHcCCEEEEEcCcc----hhhhhHH
Confidence            478999999996431                         47789999999999999999999999988    4444444


Q ss_pred             HHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCcEEEEEcCCcccccccc
Q 025360          182 LHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYRIWGNIGDQWSDLQGEC  238 (254)
Q Consensus       182 L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~i~~~IGDq~sDi~ga~  238 (254)
                      =+++|++.    +...-.      +.-|....+.+++ | ..++++||..+|..+-.
T Consensus        55 a~~lgI~~----v~~~~~------p~~k~~~v~~~q~-~-~~v~~vGDg~nD~~aL~   99 (135)
T d2b8ea1          55 SRELNLDL----VIAEVL------PHQKSEEVKKLQA-K-EVVAFVGDGINDAPALA   99 (135)
T ss_dssp             HHHHTCSE----EECSCC------HHHHHHHHHHHTT-T-SCEEEEECSSSSHHHHH
T ss_pred             Hhhhhhhh----hccccc------hhHHHHHHHHHHc-C-CEEEEEeCCCCcHHHHH
Confidence            46779863    222111      1234444444443 3 47899999999987544

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=97.88  E-value=9.6e-06  Score=67.52  Aligned_cols=56  Identities=16%  Similarity=0.062  Sum_probs=42.4

Q ss_pred             ceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHH
Q 025360          102 DAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDN  181 (254)
Q Consensus       102 ~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~  181 (254)
                      +.++|||||||++..                          ...-|.+.+.++.|++.| .++++|||+    .......
T Consensus         3 Kli~~DlDGTL~~~~--------------------------~~i~~~~~~al~~l~~~~-~~~i~TGR~----~~~~~~~   51 (267)
T d1nf2a_           3 RVFVFDLDGTLLNDN--------------------------LEISEKDRRNIEKLSRKC-YVVFASGRM----LVSTLNV   51 (267)
T ss_dssp             CEEEEECCCCCSCTT--------------------------SCCCHHHHHHHHHHTTTS-EEEEECSSC----HHHHHHH
T ss_pred             EEEEEeCCccccCCc--------------------------CccCHHHHHHHHHHHcCC-EEEEECCCC----hHHHHHH
Confidence            579999999999752                          235578889999998755 799999999    5555566


Q ss_pred             HHhCCCC
Q 025360          182 LHNQGFV  188 (254)
Q Consensus       182 L~~~G~~  188 (254)
                      +.+.+..
T Consensus        52 ~~~~~~~   58 (267)
T d1nf2a_          52 EKKYFKR   58 (267)
T ss_dssp             HHHHSSS
T ss_pred             HHHhccc
Confidence            6665543

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=9.5e-06  Score=64.99  Aligned_cols=40  Identities=28%  Similarity=0.294  Sum_probs=31.9

Q ss_pred             EEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          104 WILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       104 vIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      ++|||||||+++.                          ...-+.+.+.+++|+++|+ ++++|||.
T Consensus         4 ~lFDlDGTLl~~~--------------------------~~is~~~~~~i~~l~~~g~-~~i~tgrr   43 (244)
T d2fuea1           4 CLFDVDGTLTPAR--------------------------QKIDPEVAAFLQKLRSRVQ-IGVVGGSD   43 (244)
T ss_dssp             EEEESBTTTBSTT--------------------------SCCCHHHHHHHHHHTTTSE-EEEECSSC
T ss_pred             EEEccccCccCCC--------------------------CcCCHHHHHHHHHHHhCCC-EEEEecCC
Confidence            5589999999763                          2345788999999999996 66788887

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.86  E-value=6.1e-06  Score=66.02  Aligned_cols=46  Identities=30%  Similarity=0.365  Sum_probs=35.3

Q ss_pred             eEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCC
Q 025360          103 AWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRD  170 (254)
Q Consensus       103 avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~  170 (254)
                      -|+|||||||++..+..                     .....-+.+.+.++.|+++ ..++++|||+
T Consensus         2 Li~~DlDGTL~~~~~~~---------------------~~~~i~~~~~~~l~~l~~~-~~v~i~TGR~   47 (229)
T d1u02a_           2 LIFLDYDGTLVPIIMNP---------------------EESYADAGLLSLISDLKER-FDTYIVTGRS   47 (229)
T ss_dssp             EEEEECBTTTBCCCSCG---------------------GGCCCCHHHHHHHHHHHHH-SEEEEECSSC
T ss_pred             EEEEEecCCCCCCCCCh---------------------hhCCCCHHHHHHHHHHhhC-CCEEEEcCCC
Confidence            37899999999753100                     1245778899999999874 6799999998

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.82  E-value=1.1e-05  Score=66.14  Aligned_cols=57  Identities=18%  Similarity=0.155  Sum_probs=40.8

Q ss_pred             CceEEEecCCccccchhhhhhhccCCCCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHH
Q 025360          101 MDAWILDVDDTCISNVYYYKGKRYGCDPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRD  180 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~  180 (254)
                      +..++|||||||++...                            .+...+-+..++++|+.++++|||+    ......
T Consensus         3 ~~li~~DlDGTL~~~~~----------------------------~~~~~~~~~~~~~~g~~v~i~TGR~----~~~~~~   50 (244)
T d1s2oa1           3 QLLLISDLDNTWVGDQQ----------------------------ALEHLQEYLGDRRGNFYLAYATGRS----YHSARE   50 (244)
T ss_dssp             SEEEEECTBTTTBSCHH----------------------------HHHHHHHHHHTTGGGEEEEEECSSC----HHHHHH
T ss_pred             ceEEEEECcccCCCCCC----------------------------CHHHHHHHHHHHcCCCEEEEECCCC----HHHHHH
Confidence            34577899999997631                            1112233445678899999999999    777777


Q ss_pred             HHHhCCCCC
Q 025360          181 NLHNQGFVG  189 (254)
Q Consensus       181 ~L~~~G~~~  189 (254)
                      .++..++..
T Consensus        51 ~~~~~~~~~   59 (244)
T d1s2oa1          51 LQKQVGLME   59 (244)
T ss_dssp             HHHHHTCCC
T ss_pred             HHHHcCCCC
Confidence            888777753

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00015  Score=57.70  Aligned_cols=125  Identities=13%  Similarity=0.078  Sum_probs=66.6

Q ss_pred             cCCCCceEEEecCCccccchhhhhh-hccCC-CCCChHHHHHHHHhCCCCCchHHHHHHHHHHHCCCeEEEEeCCCcccc
Q 025360           97 SGDGMDAWILDVDDTCISNVYYYKG-KRYGC-DPYDPAGFRAWALKGGCPAIPGVLVLFNKLIESGLKVILVTGRDEETF  174 (254)
Q Consensus        97 ~~~~~~avIfDIDgTll~~~~~~~~-~~~g~-~~~~~~~~~~~~~~~~~~~~pg~~ell~~L~~~G~~i~~vTgR~~e~~  174 (254)
                      ...++..+|+|+||||+.+..-... ..+.. ..++..     ........-||+.+||+.+.+. +.|++-|+-. +..
T Consensus        11 ~~~~k~~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~-----~~~~~v~~RP~l~eFL~~l~~~-yei~I~Ta~~-~~Y   83 (181)
T d1ta0a_          11 QDSDKICVVIDLDETLVHSSFKPVNNADFIIPVEIDGV-----VHQVYVLKRPHVDEFLQRMGEL-FECVLFTASL-AKY   83 (181)
T ss_dssp             GGTTSCEEEECCBTTTEEEESSCCTTCSEEEEEEETTE-----EEEEEEEECTTHHHHHHHHHHH-SEEEEECSSC-HHH
T ss_pred             ccCCCeEEEEeCCCCEEccccCCCCCccceeeecccce-----eeeeEEecCCCHHHHHHHHHhc-eEEEEEcCCc-HHH
Confidence            3456899999999999976421000 00000 000000     0000134689999999999876 9999999999 444


Q ss_pred             HHHHHHHHHhCCCCCCCcEEEecCCCCCCCCcccHHHHHHHHHHcCCc--EEEEEcCCcccccc
Q 025360          175 GQVTRDNLHNQGFVGYERLIMRTAADKGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQWSDLQG  236 (254)
Q Consensus       175 r~~T~~~L~~~G~~~~~~lilr~~~~~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~sDi~g  236 (254)
                      .+...+.|...+.  +...+.|+.-.... ....|     .|...|..  -++.|+|+..-...
T Consensus        84 A~~il~~ldp~~~--~~~~~~r~~c~~~~-~~~~K-----dL~~l~~~l~~vvivDd~~~~~~~  139 (181)
T d1ta0a_          84 ADPVADLLDKWGA--FRARLFRESCVFHR-GNYVK-----DLSRLGRDLRRVLILDNSPASYVF  139 (181)
T ss_dssp             HHHHHHHHCSSCC--EEEEECGGGSEEET-TEEEC-----CGGGSCSCGGGEEEECSCGGGGTT
T ss_pred             HHHHHHHhccCCc--eeEEEEeeeeeecC-Ccccc-----cHhhcCCCHHHeEEEcCChhhhhc
Confidence            4444444433222  22233333221111 11122     24445543  47779998876654

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=94.67  E-value=0.029  Score=50.24  Aligned_cols=99  Identities=17%  Similarity=0.200  Sum_probs=61.6

Q ss_pred             CchHHHHHHHHHHHCCCeEEEEeCCCccccHHHHHHHHH------hCCCCCCCcEEEecCC----------------CCC
Q 025360          145 AIPGVLVLFNKLIESGLKVILVTGRDEETFGQVTRDNLH------NQGFVGYERLIMRTAA----------------DKG  202 (254)
Q Consensus       145 ~~pg~~ell~~L~~~G~~i~~vTgR~~e~~r~~T~~~L~------~~G~~~~~~lilr~~~----------------~~~  202 (254)
                      .-|.+..+|+.|++.|.++|++||.+ -..-+.+...+-      -..+..+|++++....                ..+
T Consensus       186 k~~~l~~~L~~lr~~GKklFLiTNS~-~~y~~~~m~y~~~~~~~~g~dWr~lFDvVIv~A~KP~FF~~~~~~~~v~~~~g  264 (458)
T d2bdea1         186 REKEVVEGLKHFIRYGKKIFILTNSE-YSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRFLSVNPENG  264 (458)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEEECSSC-HHHHHHHHHHHHGGGSCTTCCGGGTEEEEEESCCHHHHHHSCCCEEEECTTTC
T ss_pred             CChhHHHHHHHHHHcCCeEEEEecCc-HHHHHHHhhhhcccCCCCCCChHHhceEEEeCCCCCCccCCCCcceEEeCCCC
Confidence            35788899999999999999999999 544444444444      2244446777665421                111


Q ss_pred             C--------CCcccH---HHHHHHHHHcCC--cEEEEEcCCc-ccccccc--cCCcEEEe
Q 025360          203 K--------NAVTYK---SEIRKQLLEEGY--RIWGNIGDQW-SDLQGEC--TGNRTFKL  246 (254)
Q Consensus       203 k--------p~~~yK---~~~r~~l~~~Gy--~i~~~IGDq~-sDi~ga~--~g~r~fkl  246 (254)
                      .        ...+|.   .....++  .|.  ..|++|||+. +||...+  .|=||+.+
T Consensus       265 ~l~~~~~~~~~~vY~gGn~~~l~~l--lg~~g~~VLY~GDhi~~Di~~~kk~~gWrT~~I  322 (458)
T d2bdea1         265 TMTNVHGPIVPGVYQGGNAKKFTED--LGVGGDEILYIGDHIYGDILRLKKDCNWRTALV  322 (458)
T ss_dssp             CEEECCSCCCSEEEEECCHHHHHHH--TTCCGGGEEEEESSCCSCHHHHHHHHCSEEEEE
T ss_pred             ccccCCccccCCccccCCHHHHHHH--hCCCCCcEEEECCccchhhhhhhhhcCCceEEe
Confidence            0        011333   1122222  233  3699999999 6998876  57777765

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=92.37  E-value=0.027  Score=45.57  Aligned_cols=42  Identities=19%  Similarity=0.193  Sum_probs=30.3

Q ss_pred             CCCCcccHHHHHHHHHHcCC--cEEEEEcCCcc-cccccc-cCCcEEEe
Q 025360          202 GKNAVTYKSEIRKQLLEEGY--RIWGNIGDQWS-DLQGEC-TGNRTFKL  246 (254)
Q Consensus       202 ~kp~~~yK~~~r~~l~~~Gy--~i~~~IGDq~s-Di~ga~-~g~r~fkl  246 (254)
                      +||.+.....   .++..|.  ..+++|||+.. ||.||+ +|++++.+
T Consensus       179 gKP~p~~~~~---al~~l~i~~~~~~mIGDs~~~DI~gA~~aG~~si~V  224 (253)
T d1wvia_         179 GKPEAVIMNK---ALDRLGVKRHEAIMVGDNYLTDITAGIKNDIATLLV  224 (253)
T ss_dssp             STTSHHHHHH---HHHHHTSCGGGEEEEESCTTTTHHHHHHTTCEEEEE
T ss_pred             ccCCccccee---hhhhccccccceEEEcCChHHHHHHHHHCCCCEEEE
Confidence            4776544433   4454454  45999999975 999998 89999886

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=89.66  E-value=0.084  Score=42.36  Aligned_cols=44  Identities=23%  Similarity=0.168  Sum_probs=31.5

Q ss_pred             CCCCCcccHHHHHHHHHHcCCc--EEEEEcCCc-ccccccc-cCCcEEEeC
Q 025360          201 KGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQW-SDLQGEC-TGNRTFKLP  247 (254)
Q Consensus       201 ~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~-sDi~ga~-~g~r~fklP  247 (254)
                      .+||.+.+   ....+++.|..  .+++|||+. +|+.+|+ +|++++.+.
T Consensus       174 ~~KP~p~~---~~~a~~~lgi~p~e~v~IGD~~~~DI~~a~~aG~~tilV~  221 (250)
T d2c4na1         174 VGKPSPWI---IRAALNKMQAHSEETVIVGDNLRTDILAGFQAGLETILVL  221 (250)
T ss_dssp             CSTTSTHH---HHHHHHHHTCCGGGEEEEESCTTTHHHHHHHTTCEEEEES
T ss_pred             cccchhhh---HhhhhhhhcCCchheEEecCChHHHHHHHHHCCCCEEEEC
Confidence            34665433   33455666665  499999997 6999998 899999863

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=87.50  E-value=0.14  Score=40.89  Aligned_cols=43  Identities=19%  Similarity=0.290  Sum_probs=30.3

Q ss_pred             CCCCCcccHHHHHHHHHHcCCc--EEEEEcCCc-ccccccc-cCCcEEEe
Q 025360          201 KGKNAVTYKSEIRKQLLEEGYR--IWGNIGDQW-SDLQGEC-TGNRTFKL  246 (254)
Q Consensus       201 ~~kp~~~yK~~~r~~l~~~Gy~--i~~~IGDq~-sDi~ga~-~g~r~fkl  246 (254)
                      .+||.+.+.   ...++..|..  .+++|||++ +|++||+ +|++++.+
T Consensus       178 ~~KP~~~~~---~~~~~~~gi~~~~~l~IGD~~~~DI~~a~~aG~~si~V  224 (253)
T d1yv9a1         178 IGKPKAIIM---ERAIAHLGVEKEQVIMVGDNYETDIQSGIQNGIDSLLV  224 (253)
T ss_dssp             CSTTSHHHH---HHHHHHHCSCGGGEEEEESCTTTHHHHHHHHTCEEEEE
T ss_pred             ecccchhHH---HHHHHHhCCCccceEEecCChHHHHHHHHHCCCCEEEE
Confidence            356654332   2345555654  599999997 5999998 89999876

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.84  E-value=0.26  Score=42.30  Aligned_cols=20  Identities=25%  Similarity=0.448  Sum_probs=17.6

Q ss_pred             CceEEEecCCccccchhhhh
Q 025360          101 MDAWILDVDDTCISNVYYYK  120 (254)
Q Consensus       101 ~~avIfDIDgTll~~~~~~~  120 (254)
                      ++.|+||+||++++...+|-
T Consensus         1 ~~~i~fd~dGVll~~~~~~D   20 (380)
T d1qyia_           1 MKKILFDVDGVFLSEERCFD   20 (380)
T ss_dssp             CCEEEECSBTTTBCSHHHHH
T ss_pred             CceEEEeCCcEEEcceeecc
Confidence            47899999999999988874