Citrus Sinensis ID: 025376

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG
Secondary Structure (PSIPRED)
ccHHHHHHHHHHcHHHHHHccccHHHHHHHHHHcccccccHHHHHccccccccHHHHHHHccccccccEEEEEEEEEEcccccccccccEEEEEEEEEEEEcccccEEEEEccccHHHHHHHHcccccccccEEEEEEEEEccEEEEEEEccccccEEEEEEEEEEccccccccccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHHHcccEEEcEEEEEEEEEEEcccccccccccEEEEEEEEEEEEccccEEEEEEccccHHHHHHHHcccccccccEEEEEEEEcccccEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEEEEcccccccccHHHccHHcccccccccccccccHHcccccccEEEEEcccccccccccccccccEEccc
Coil and Loop (DISEMBL)
mspydlgkascvcrkwkytirnpvfWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLrpriridglyvsrNTYIRAGVAewkitnpvhIVCYYRYmrffpsgrfiyknsSQKIKDVAKIMNFRAAKadcvftghytlseEKVEAAvlypglrptVLRIRLRLrgttagannRMDLLSLVTSgmndnevnghdediLGVVEgwqddethnpdvpavshkrgltpfvfvpfeeVETSvlnlpvekmdyyvpg
Flexible Loop (DISEMBL)
mspydlgkascvcrkWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSryegswrkmwllrpriridglyvSRNTYIRagvaewkitnpVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVeaavlypglrptvLRIRLrlrgttagannrmDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVetsvlnlpvekmdyyvpg
Low Complexity Region (SEG)
MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG
Disordered region (IsUnstruct)
*****LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQD*******VPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYY***
Disordered Region (DISOPRED)
MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAA*ADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRL*****G*NNRMDLLS*****************************************RGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG
Disordered Region (DISEMBL)
MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG
Disordered Region (DISPRO)
MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q9XI00	328	F-box protein 7 OS=Arabid	yes	no	1.0	0.771	0.796	1e-124
Q8BK06	437	F-box only protein 9 OS=M	yes	no	0.517	0.299	0.381	4e-20
Q9UK97	447	F-box only protein 9 OS=H	yes	no	0.517	0.293	0.374	7e-20
Q3ZBT2	437	F-box only protein 9 OS=B	yes	no	0.517	0.299	0.374	1e-19
Q5U2X1	435	F-box only protein 9 OS=R	yes	no	0.517	0.301	0.374	2e-19
F6Y9J3	431	F-box only protein 9 OS=X	yes	no	0.517	0.303	0.366	6e-19
Q6P3K3	421	F-box only protein 9 OS=D	yes	no	0.549	0.330	0.346	4e-18
O74531	361	F-box protein pof7 OS=Sch	yes	no	0.632	0.443	0.25	3e-13
Q12347	344	F-box protein HRT3 OS=Sac	yes	no	0.292	0.215	0.311	3e-05

>sp|Q9XI00|SKI32_ARATH F-box protein 7 OS=Arabidopsis thaliana GN=SKIP32 PE=1 SV=1

 Score =  444 bits (1141), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/255 (79%), Positives = 235/255 (92%), Gaps = 2/255 (0%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M PYDLG+ASCVCRKW+YT+RNP+FWRNACLKAWQ +GV+ENYKILQS+Y+GSWRKMWLL
Sbjct: 74  MMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAGVIENYKILQSKYDGSWRKMWLL 133

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           R R+R DGLYVSRNTYIRAG+AEWKITNPVHIVCYYRY+RF+PSGRF+YKNSSQK+KDVA
Sbjct: 134 RSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVCYYRYIRFYPSGRFLYKNSSQKLKDVA 193

Query: 121 KIMNFRAAKADCVFTGHYTL--SEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDL 178
           K MNF+A+K++ ++ G YTL  S++K+EAAVLYPG RPTVLRIRLRLRGT  GANNRMDL
Sbjct: 194 KYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLRLRGTAIGANNRMDL 253

Query: 179 LSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETS 238
           LSLVTSG+ND E++  +EDILG+VEGW+DDETHNPD+PAVSHKRG+T FVFVPFEEV+ S
Sbjct: 254 LSLVTSGVNDEEISSTEEDILGLVEGWEDDETHNPDIPAVSHKRGMTAFVFVPFEEVDES 313

Query: 239 VLNLPVEKMDYYVPG 253
           VLNLP EKMDYYV G
Sbjct: 314 VLNLPPEKMDYYVTG 328

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Required for efficient protein synthesis during temperature stress conditions.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8BK06|FBX9_MOUSE F-box only protein 9 OS=Mus musculus GN=Fbxo9 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 75/139 (53%), Gaps = 8/139 (5%)

Query: 6   LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
           L + S VCR +    R+P  WR ACLK W  S +    K++      SWR+M+L RPR+R
Sbjct: 203 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCM----KLVPY---ASWREMFLERPRVR 255

Query: 66  IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
            DG+Y+S+ TYIR G           H V YYRYMRFFP G  +   + ++   +   + 
Sbjct: 256 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYMRFFPDGHVMMLTTPEEPPSIVPRLR 315

Query: 125 FRAAKADCVFTGHYTLSEE 143
            R  + D +  GHY LS++
Sbjct: 316 TRNTRTDAILLGHYRLSQD 334

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Mus musculus (taxid: 10090)

>sp|Q9UK97|FBX9_HUMAN F-box only protein 9 OS=Homo sapiens GN=FBXO9 PE=1 SV=1

 Score = 97.8 bits (242), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 6   LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
           L + S VCR +    R+P  WR ACLK W  S +    K++      SWR+M+L RPR+R
Sbjct: 213 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCI----KLVPY---TSWREMFLERPRVR 265

Query: 66  IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
            DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + ++ + +   + 
Sbjct: 266 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPQSIVPRLR 325

Query: 125 FRAAKADCVFTGHYTLSEE 143
            R  + D +  GHY LS++
Sbjct: 326 TRNTRTDAILLGHYRLSQD 344

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Homo sapiens (taxid: 9606)

>sp|Q3ZBT2|FBX9_BOVIN F-box only protein 9 OS=Bos taurus GN=FBXO9 PE=2 SV=2

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 6   LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
           L + S VCR +    R+P  WR ACLK W  S +    K++      SWR+M+L RPR+R
Sbjct: 203 LEQLSQVCRGFYICARDPEIWRLACLKVWGRSCI----KLVPY---TSWREMFLERPRVR 255

Query: 66  IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
            DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + ++ + +   + 
Sbjct: 256 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYVRFFPDGHVMMLTTPEEPQSIVPRLR 315

Query: 125 FRAAKADCVFTGHYTLSEE 143
            R  + D +  GHY LS++
Sbjct: 316 TRNTRTDAILLGHYRLSQD 334

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Bos taurus (taxid: 9913)

>sp|Q5U2X1|FBX9_RAT F-box only protein 9 OS=Rattus norvegicus GN=Fbxo9 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 52/139 (37%), Positives = 75/139 (53%), Gaps = 8/139 (5%)

Query: 6   LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
           L + S VCR +    R+P  WR ACLK W  S +    K++      SWR+M+L RPR+R
Sbjct: 201 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCM----KLVPF---SSWREMFLERPRVR 253

Query: 66  IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
            DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + ++   +   + 
Sbjct: 254 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPPSIVPRLR 313

Query: 125 FRAAKADCVFTGHYTLSEE 143
            R  + D +  GHY LS++
Sbjct: 314 TRNTRTDAILLGHYRLSQD 332

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex.

Rattus norvegicus (taxid: 10116)

>sp|F6Y9J3|FBX9_XENTR F-box only protein 9 OS=Xenopus tropicalis GN=fbxo9 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 51/139 (36%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 6   LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
           L + S VC+ +    R+P  WR ACLK W  + V    KI+      +WR+M+L RPR+R
Sbjct: 196 LEQLSLVCKGFYICARDPEIWRLACLKVWGRNCV----KIVPY---TTWRQMFLERPRVR 248

Query: 66  IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
            DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + +  + +   + 
Sbjct: 249 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYLRFFPDGHVMMLTTPEDPQTIVPRLR 308

Query: 125 FRAAKADCVFTGHYTLSEE 143
            + A+ D +  GHY LS++
Sbjct: 309 TKNARTDAMLLGHYRLSQD 327

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling.

Xenopus tropicalis (taxid: 8364)

>sp|Q6P3K3|FBX9_DANRE F-box only protein 9 OS=Danio rerio GN=fbxo9 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 51/147 (34%), Positives = 77/147 (52%), Gaps = 8/147 (5%)

Query: 6   LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
           L + S VCR +    R+P  WR+ACL+ W  S      K+L      SWR+M+L RPR+R
Sbjct: 186 LEQLSLVCRGFYICARDPEIWRSACLRVWGRSCT----KMLPY---SSWREMFLERPRVR 238

Query: 66  IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
            DG+Y+S+ +YIR G           H V YYRY+RFFP G+ +   + +        + 
Sbjct: 239 FDGVYISKTSYIRQGEESLDGFYRAWHQVEYYRYLRFFPDGQVMMLTTPEDPLVTVPRLR 298

Query: 125 FRAAKADCVFTGHYTLSEEKVEAAVLY 151
            + ++ D +  GHY LS++      +Y
Sbjct: 299 SKNSRMDSIMFGHYRLSQDTDNQTKVY 325

Substrate recognition component of a (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins and acts as a regulator of mTOR signaling.

Danio rerio (taxid: 7955)

>sp|O74531|POF7_SCHPO F-box protein pof7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pof7 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 84/180 (46%), Gaps = 20/180 (11%)

Query: 6   LGKASCVCRKWKYTIRNPVFWRNACL-----KAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           L   +  C+ +   +R    +R+ C      K WQ S +    + L  +Y+ SW+ ++L 
Sbjct: 137 LSSIALTCKHFAKALRADSLYRSFCYCSCEQKEWQQS-IKSIEEELVEKYQQSWKTLFLK 195

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           +PR R DG Y+S   Y R G ++     P+H++ YYRY+R +P+   I   SS +  DV 
Sbjct: 196 KPRSRFDGCYISVCRYFRPGTSDTSWNQPIHLITYYRYLRLYPNSTCIVYQSSNEPNDVV 255

Query: 121 KIMNFR-------------AAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRG 167
           +  + +              +  +   TG ++++    E  ++YP  +      +L++RG
Sbjct: 256 RNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSG-EMLIVYPASQTYTYVQKLQVRG 314

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q12347|HRT3_YEAST F-box protein HRT3 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HRT3 PE=1 SV=1

 Score = 48.9 bits (115), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/77 (31%), Positives = 42/77 (54%), Gaps = 3/77 (3%)

Query: 33  AWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGV---AEWKITNP 89
           A  L+G+ +     +  + G   +M   RP I+ +G+Y+S   Y+R G    +   +  P
Sbjct: 161 AMDLNGITDINTFEKEIWRGDDYRMLRERPYIKFEGVYISVVNYVRYGSNAESSLSLLKP 220

Query: 90  VHIVCYYRYMRFFPSGR 106
           VH++ YYRY RF+ +G+
Sbjct: 221 VHMITYYRYFRFYENGQ 237

Substrate recognition component of a SCF (SKP1-CUL1-F-box protein) E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins. Probably recognizes and binds to phosphorylated target proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
358248956	329	uncharacterized protein LOC100786704 [Gl	1.0	0.768	0.877	1e-134
356509387	329	PREDICTED: F-box protein 7-like [Glycine	1.0	0.768	0.865	1e-134
357463567	329	F-box protein [Medicago truncatula] gi|2	1.0	0.768	0.845	1e-131
388513465	329	unknown [Lotus japonicus]	1.0	0.768	0.853	1e-131
449449749	379	PREDICTED: F-box protein 7-like [Cucumis	1.0	0.667	0.849	1e-130
359492545	327	PREDICTED: LOW QUALITY PROTEIN: F-box pr	1.0	0.773	0.857	1e-130
449516302	327	PREDICTED: F-box protein 7-like [Cucumis	1.0	0.773	0.849	1e-130
297845164	328	F-box family protein [Arabidopsis lyrata	1.0	0.771	0.803	1e-124
18395030	328	F-box protein 7 [Arabidopsis thaliana] g	1.0	0.771	0.796	1e-122
147841577	296	hypothetical protein VITISV_006219 [Viti	0.928	0.793	0.742	1e-113

>gi|358248956|ref|NP_001239713.1| uncharacterized protein LOC100786704 [Glycine max] gi|255635177|gb|ACU17944.1| unknown [Glycine max]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/253 (87%), Positives = 243/253 (96%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL G+VENYKILQS+Y+GSWRKMWLL
Sbjct: 77  MTPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLFGIVENYKILQSKYDGSWRKMWLL 136

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           RPR+R DGLYVSRNTYIRAGVAEWKITNPVH+VCY+RY+RFFPSGRF+YKNSSQKIKDVA
Sbjct: 137 RPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYLRFFPSGRFLYKNSSQKIKDVA 196

Query: 121 KIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLS 180
           K MNFR++K DCVF GHYTLS++KVEAAVLYPG+RPTVLRIRLRLRGTT GANNRMDL+S
Sbjct: 197 KCMNFRSSKIDCVFGGHYTLSDDKVEAAVLYPGMRPTVLRIRLRLRGTTTGANNRMDLIS 256

Query: 181 LVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVL 240
           LVTSG+N +E +  +EDILGVVEGWQDDETHNPDVPAVSHKRG+TPFVFVPFEEVETSVL
Sbjct: 257 LVTSGVNSSEASAPEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPFVFVPFEEVETSVL 316

Query: 241 NLPVEKMDYYVPG 253
           NLPVEKMDY+VPG
Sbjct: 317 NLPVEKMDYFVPG 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509387|ref|XP_003523431.1| PREDICTED: F-box protein 7-like [Glycine max]

 Score =  482 bits (1241), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 219/253 (86%), Positives = 245/253 (96%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PYDLG+ASCVCRKWKYTIRNPVFWRNACLKAWQLSG+VENY+ILQS+Y+GSWRKMWL 
Sbjct: 77  MTPYDLGRASCVCRKWKYTIRNPVFWRNACLKAWQLSGIVENYRILQSKYDGSWRKMWLS 136

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           RPR+R DGLYVSRNTYIRAGVAEWKITNPVH+VCY+RY+RFFPSGRF+YKNSSQK+KDVA
Sbjct: 137 RPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYLRFFPSGRFLYKNSSQKVKDVA 196

Query: 121 KIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLS 180
           K MNFR++KADCVF GHYTLS++KVEAAVLYPG+RPTVLRIRLR+RGTT+GANNRMDL+S
Sbjct: 197 KCMNFRSSKADCVFGGHYTLSDDKVEAAVLYPGMRPTVLRIRLRIRGTTSGANNRMDLIS 256

Query: 181 LVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVL 240
           LVTSG+N +E +  +EDILGVVEGWQDDETHNPDVPAVSHKRG+TPFVFVPFEEVETSVL
Sbjct: 257 LVTSGVNSSEASAPEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPFVFVPFEEVETSVL 316

Query: 241 NLPVEKMDYYVPG 253
           NLPVEKMDY+VPG
Sbjct: 317 NLPVEKMDYFVPG 329

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463567|ref|XP_003602065.1| F-box protein [Medicago truncatula] gi|217074340|gb|ACJ85530.1| unknown [Medicago truncatula] gi|355491113|gb|AES72316.1| F-box protein [Medicago truncatula] gi|388500196|gb|AFK38164.1| unknown [Medicago truncatula]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 214/253 (84%), Positives = 238/253 (94%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PYD+GKASCVCRKW+YTIRNP FWRNACLK WQLSG VENYKILQS+Y+GSWRKMWLL
Sbjct: 77  MTPYDMGKASCVCRKWRYTIRNPAFWRNACLKGWQLSGAVENYKILQSKYDGSWRKMWLL 136

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           RPR+R DGLY SRNTYIR GVAEWKITNPVH+VCYYRY+RFFPSG+F+YKNSSQKIKDV 
Sbjct: 137 RPRLRFDGLYASRNTYIRVGVAEWKITNPVHVVCYYRYLRFFPSGKFLYKNSSQKIKDVV 196

Query: 121 KIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLS 180
           K MNFR++K DCVF GHYTL+++KVEAAVLYPG+RPTVLRIR+RLRGTT GANNRMDL+S
Sbjct: 197 KSMNFRSSKTDCVFGGHYTLTDDKVEAAVLYPGMRPTVLRIRMRLRGTTTGANNRMDLIS 256

Query: 181 LVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVL 240
           LVTSG++ NE +  +EDILGVVEGWQDDETHNPDVPAVSHKRG+TPFVFVPFEEVETS+L
Sbjct: 257 LVTSGVDTNEASTSEEDILGVVEGWQDDETHNPDVPAVSHKRGMTPFVFVPFEEVETSLL 316

Query: 241 NLPVEKMDYYVPG 253
           NLPVEKMDYYVPG
Sbjct: 317 NLPVEKMDYYVPG 329

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388513465|gb|AFK44794.1| unknown [Lotus japonicus]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 216/253 (85%), Positives = 240/253 (94%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PYD+GKASCVCRKWKYTIRNPVFWR+ACLKAWQ SGVVENYKILQS+Y+GSWRKMWLL
Sbjct: 77  MTPYDMGKASCVCRKWKYTIRNPVFWRHACLKAWQFSGVVENYKILQSKYDGSWRKMWLL 136

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           RPR+R DGLYVSRNTYIRAGVAEWKITNPVH+VCY+RY+RFFPSGRF+YKNSSQK+KDV 
Sbjct: 137 RPRLRTDGLYVSRNTYIRAGVAEWKITNPVHVVCYFRYIRFFPSGRFLYKNSSQKVKDVV 196

Query: 121 KIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLS 180
           K MNFR++KA+CVF G+YTLS++KVEAAVLYPGLRPTVLRIRLRLRGT  GANNRMDL+S
Sbjct: 197 KCMNFRSSKAECVFGGNYTLSDDKVEAAVLYPGLRPTVLRIRLRLRGTATGANNRMDLIS 256

Query: 181 LVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVL 240
           LVTSG+N +E +  +EDILGVV+GWQDDETHNPDVPAVSHKRG+ PFVFVPFEEVE SVL
Sbjct: 257 LVTSGVNSSEASAPEEDILGVVDGWQDDETHNPDVPAVSHKRGMAPFVFVPFEEVEASVL 316

Query: 241 NLPVEKMDYYVPG 253
           NLPVEKMDYYVPG
Sbjct: 317 NLPVEKMDYYVPG 329

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449749|ref|XP_004142627.1| PREDICTED: F-box protein 7-like [Cucumis sativus]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/253 (84%), Positives = 240/253 (94%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PYDLG+ASCVCRKW+YTIRNPVFWRNACLKAWQLSGVVENYK LQS Y+GSWRKMWLL
Sbjct: 127 MTPYDLGRASCVCRKWRYTIRNPVFWRNACLKAWQLSGVVENYKFLQSMYDGSWRKMWLL 186

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           RPRIR DGLYVSRNTYIRAG+AEWKITNPVH+VCY+RY+RFFPSGRF+YKNSSQKIKDVA
Sbjct: 187 RPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGRFLYKNSSQKIKDVA 246

Query: 121 KIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLS 180
           K MNFRA+KADC+F GHYTLS++KVEAAVLY G RPTVLRIR+RLRGT+ GANNRMDLL+
Sbjct: 247 KCMNFRASKADCIFGGHYTLSDDKVEAAVLYSGARPTVLRIRMRLRGTSTGANNRMDLLT 306

Query: 181 LVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVL 240
           LVTSGMN+NEV   +EDILG+VE W+DDETHNPDVPAVSHKRGLTPF+FVPF++VETS L
Sbjct: 307 LVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTPFIFVPFDQVETSEL 366

Query: 241 NLPVEKMDYYVPG 253
           NLPV+KMDY+VPG
Sbjct: 367 NLPVDKMDYFVPG 379

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492545|ref|XP_003634429.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein 7-like [Vitis vinifera]

 Score =  470 bits (1210), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 217/253 (85%), Positives = 241/253 (95%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PY LG+A+CVCRKW+YTIRNPVFWR+ACLKAWQLSGVVENYKILQSRYE SWRKMWLL
Sbjct: 75  MTPYTLGRAACVCRKWRYTIRNPVFWRSACLKAWQLSGVVENYKILQSRYESSWRKMWLL 134

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           RPR+R DGLYVSRNTYIRAGVAEW++TNPVH+VCY+RY+RFFPSGRF+YKNSSQK+KDV 
Sbjct: 135 RPRVRTDGLYVSRNTYIRAGVAEWRVTNPVHVVCYFRYIRFFPSGRFLYKNSSQKVKDVV 194

Query: 121 KIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLS 180
           K MN RA+KADCVF+GHYTLS++K+EAAVLYPG+RPTV RIRLRLRGTTAGANNRMDLLS
Sbjct: 195 KCMNSRASKADCVFSGHYTLSDDKIEAAVLYPGMRPTVWRIRLRLRGTTAGANNRMDLLS 254

Query: 181 LVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVL 240
           LVTSG++DNEVNG DEDILGVVEGW++DETHNPDVPAVSHKRGL  FVFVPFEEVETS L
Sbjct: 255 LVTSGVSDNEVNGPDEDILGVVEGWEEDETHNPDVPAVSHKRGLKAFVFVPFEEVETSDL 314

Query: 241 NLPVEKMDYYVPG 253
           NLPV+KMDYYV G
Sbjct: 315 NLPVDKMDYYVAG 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449516302|ref|XP_004165186.1| PREDICTED: F-box protein 7-like [Cucumis sativus]

 Score =  469 bits (1207), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 215/253 (84%), Positives = 240/253 (94%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PYDLG+ASCVCRKW+YTIRNPVFWRNACLKAWQLSGVVENYK LQS Y+GSWRKMWLL
Sbjct: 75  MTPYDLGRASCVCRKWRYTIRNPVFWRNACLKAWQLSGVVENYKFLQSMYDGSWRKMWLL 134

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           RPRIR DGLYVSRNTYIRAG+AEWKITNPVH+VCY+RY+RFFPSGRF+YKNSSQKIKDVA
Sbjct: 135 RPRIRTDGLYVSRNTYIRAGIAEWKITNPVHLVCYFRYIRFFPSGRFLYKNSSQKIKDVA 194

Query: 121 KIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDLLS 180
           K MNFRA+KADC+F GHYTLS++KVEAAVLY G RPTVLRIR+RLRGT+ GANNRMDLL+
Sbjct: 195 KCMNFRASKADCIFGGHYTLSDDKVEAAVLYSGARPTVLRIRMRLRGTSTGANNRMDLLT 254

Query: 181 LVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETSVL 240
           LVTSGMN+NEV   +EDILG+VE W+DDETHNPDVPAVSHKRGLTPF+FVPF++VETS L
Sbjct: 255 LVTSGMNNNEVGDPEEDILGIVERWRDDETHNPDVPAVSHKRGLTPFIFVPFDQVETSEL 314

Query: 241 NLPVEKMDYYVPG 253
           NLPV+KMDY+VPG
Sbjct: 315 NLPVDKMDYFVPG 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845164|ref|XP_002890463.1| F-box family protein [Arabidopsis lyrata subsp. lyrata] gi|297336305|gb|EFH66722.1| F-box family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  448 bits (1153), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 205/255 (80%), Positives = 235/255 (92%), Gaps = 2/255 (0%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M PYDLG+A+CVCRKW+YT+RNPVFWRNACLKAWQ +GV+ENYKILQS+Y+GSWRKMWLL
Sbjct: 74  MMPYDLGRAACVCRKWRYTVRNPVFWRNACLKAWQTAGVIENYKILQSKYDGSWRKMWLL 133

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           R R+R DGLYVSRNTYIRAG+ EWKITNPVHIVCY+RY+RF+PSGRF+YKNSSQK+KDVA
Sbjct: 134 RSRVRTDGLYVSRNTYIRAGITEWKITNPVHIVCYFRYIRFYPSGRFLYKNSSQKLKDVA 193

Query: 121 KIMNFRAAKADCVFTGHYTL--SEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDL 178
           K MNF+A+K+D ++ G YTL  S++K+EAAVLYPG RPTVLRIRLRLRGT  GANNRMDL
Sbjct: 194 KYMNFKASKSDSLYRGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLRLRGTAIGANNRMDL 253

Query: 179 LSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETS 238
           LSLVTSG+ND E++  +EDILGVVEGW+DDETHNPD+PAVSHKRG+TPFVFVPFEEVE S
Sbjct: 254 LSLVTSGVNDEEISSTEEDILGVVEGWEDDETHNPDIPAVSHKRGMTPFVFVPFEEVEQS 313

Query: 239 VLNLPVEKMDYYVPG 253
           VLNLP EKMDYYV G
Sbjct: 314 VLNLPPEKMDYYVTG 328

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18395030|ref|NP_564150.1| F-box protein 7 [Arabidopsis thaliana] gi|75267563|sp|Q9XI00.1|SKI32_ARATH RecName: Full=F-box protein 7; AltName: Full=SKP1-interacting partner 32 gi|5263329|gb|AAD41431.1|AC007727_20 Contains PF|00646 F-box domain. ESTs gb|Z37267, gb|R90412, gb|Z37268 and gb|T88189 come from this gene [Arabidopsis thaliana] gi|30102634|gb|AAP21235.1| At1g21760 [Arabidopsis thaliana] gi|110736044|dbj|BAE99994.1| hypothetical protein [Arabidopsis thaliana] gi|332192032|gb|AEE30153.1| F-box protein 7 [Arabidopsis thaliana]

 Score =  444 bits (1141), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 203/255 (79%), Positives = 235/255 (92%), Gaps = 2/255 (0%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M PYDLG+ASCVCRKW+YT+RNP+FWRNACLKAWQ +GV+ENYKILQS+Y+GSWRKMWLL
Sbjct: 74  MMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAGVIENYKILQSKYDGSWRKMWLL 133

Query: 61  RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
           R R+R DGLYVSRNTYIRAG+AEWKITNPVHIVCYYRY+RF+PSGRF+YKNSSQK+KDVA
Sbjct: 134 RSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVCYYRYIRFYPSGRFLYKNSSQKLKDVA 193

Query: 121 KIMNFRAAKADCVFTGHYTL--SEEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDL 178
           K MNF+A+K++ ++ G YTL  S++K+EAAVLYPG RPTVLRIRLRLRGT  GANNRMDL
Sbjct: 194 KYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLRLRGTAIGANNRMDL 253

Query: 179 LSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETS 238
           LSLVTSG+ND E++  +EDILG+VEGW+DDETHNPD+PAVSHKRG+T FVFVPFEEV+ S
Sbjct: 254 LSLVTSGVNDEEISSTEEDILGLVEGWEDDETHNPDIPAVSHKRGMTAFVFVPFEEVDES 313

Query: 239 VLNLPVEKMDYYVPG 253
           VLNLP EKMDYYV G
Sbjct: 314 VLNLPPEKMDYYVTG 328

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841577|emb|CAN62099.1| hypothetical protein VITISV_006219 [Vitis vinifera]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 202/272 (74%), Positives = 223/272 (81%), Gaps = 37/272 (13%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
           M+PY LG+A+CVCRKW+YTIRNPVFWR+ACLKAWQLSGVVENYKILQSRYE SWRKMWLL
Sbjct: 43  MTPYTLGRAACVCRKWRYTIRNPVFWRSACLKAWQLSGVVENYKILQSRYESSWRKMWLL 102

Query: 61  RPRIRID-------------------GLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRF 101
           RPR+R D                   GLYVSRNTYIRAGVAEW++TNPVH+         
Sbjct: 103 RPRVRTDDYHCFVTFCPERKFAFHISGLYVSRNTYIRAGVAEWRVTNPVHV--------- 153

Query: 102 FPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPGLRPTVLRI 161
                    NSSQK+KDV K MN RA+KADCVF+GHYTLS++K+EAAVLYPG+RPTV RI
Sbjct: 154 ---------NSSQKVKDVVKCMNSRASKADCVFSGHYTLSDDKIEAAVLYPGMRPTVWRI 204

Query: 162 RLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHK 221
           RLRLRGTTAGANNRMDLLSLVTSG++DNEVNG DEDILGVVEGW++DETHNPDVPAVSHK
Sbjct: 205 RLRLRGTTAGANNRMDLLSLVTSGVSDNEVNGPDEDILGVVEGWEEDETHNPDVPAVSHK 264

Query: 222 RGLTPFVFVPFEEVETSVLNLPVEKMDYYVPG 253
           RGL  FVFVPFEEVETS LNLPV+KMDYYV G
Sbjct: 265 RGLKAFVFVPFEEVETSDLNLPVDKMDYYVAG 296

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2036932	328	FBP7 "AT1G21760" [Arabidopsis	1.0	0.771	0.796	3.4e-116
MGI|MGI:1918788	437	Fbxo9 "f-box protein 9" [Mus m	0.517	0.299	0.388	3.3e-20
UNIPROTKB|Q9UK97	447	FBXO9 "F-box only protein 9" [	0.517	0.293	0.381	4.6e-20
UNIPROTKB|Q3ZBT2	437	FBXO9 "F-box only protein 9" [	0.517	0.299	0.381	7e-20
RGD|1310374	435	Fbxo9 "f-box protein 9" [Rattu	0.517	0.301	0.374	1.5e-19
UNIPROTKB|F6Y9J3	431	fbxo9 "F-box only protein 9" [	0.517	0.303	0.374	4e-19
ZFIN|ZDB-GENE-030131-4194	421	fbxo9 "F-box protein 9" [Danio	0.549	0.330	0.353	2.2e-18
POMBASE|SPCC1827.08c	361	pof7 "F-box protein Pof7" [Sch	0.632	0.443	0.266	2.3e-13
ASPGD|ASPL0000006907	534	fbx1 [Emericella nidulans (tax	0.217	0.102	0.460	4.1e-07
SGD|S000004087	344	HRT3 "Putative SCF-ubiquitin l	0.351	0.258	0.315	5.2e-05

TAIR|locus:2036932 FBP7 "AT1G21760" [Arabidopsis thaliana (taxid:3702)]

 Score = 1145 (408.1 bits), Expect = 3.4e-116, P = 3.4e-116
 Identities = 203/255 (79%), Positives = 235/255 (92%)

Query:     1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
             M PYDLG+ASCVCRKW+YT+RNP+FWRNACLKAWQ +GV+ENYKILQS+Y+GSWRKMWLL
Sbjct:    74 MMPYDLGRASCVCRKWRYTVRNPMFWRNACLKAWQTAGVIENYKILQSKYDGSWRKMWLL 133

Query:    61 RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
             R R+R DGLYVSRNTYIRAG+AEWKITNPVHIVCYYRY+RF+PSGRF+YKNSSQK+KDVA
Sbjct:   134 RSRVRTDGLYVSRNTYIRAGIAEWKITNPVHIVCYYRYIRFYPSGRFLYKNSSQKLKDVA 193

Query:   121 KIMNFRAAKADCVFTGHYTLS--EEKVEAAVLYPGLRPTVLRIRLRLRGTTAGANNRMDL 178
             K MNF+A+K++ ++ G YTLS  ++K+EAAVLYPG RPTVLRIRLRLRGT  GANNRMDL
Sbjct:   194 KYMNFKASKSENLYKGTYTLSMSDDKIEAAVLYPGTRPTVLRIRLRLRGTAIGANNRMDL 253

Query:   179 LSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHKRGLTPFVFVPFEEVETS 238
             LSLVTSG+ND E++  +EDILG+VEGW+DDETHNPD+PAVSHKRG+T FVFVPFEEV+ S
Sbjct:   254 LSLVTSGVNDEEISSTEEDILGLVEGWEDDETHNPDIPAVSHKRGMTAFVFVPFEEVDES 313

Query:   239 VLNLPVEKMDYYVPG 253
             VLNLP EKMDYYV G
Sbjct:   314 VLNLPPEKMDYYVTG 328

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006417 "regulation of translation" evidence=IMP

GO:0009408 "response to heat" evidence=IMP

GO:0009409 "response to cold" evidence=IMP

GO:0090406 "pollen tube" evidence=IDA

MGI|MGI:1918788 Fbxo9 "f-box protein 9" [Mus musculus (taxid:10090)]

 Score = 244 (91.0 bits), Expect = 3.3e-20, P = 3.3e-20
 Identities = 54/139 (38%), Positives = 76/139 (54%)

Query:     6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
             L + S VCR +    R+P  WR ACLK W  S +    K++   Y  SWR+M+L RPR+R
Sbjct:   203 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCM----KLVP--Y-ASWREMFLERPRVR 255

Query:    66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
              DG+Y+S+ TYIR G           H V YYRYMRFFP G  +   + ++   +   + 
Sbjct:   256 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYMRFFPDGHVMMLTTPEEPPSIVPRLR 315

Query:   125 FRAAKADCVFTGHYTLSEE 143
              R  + D +  GHY LS++
Sbjct:   316 TRNTRTDAILLGHYRLSQD 334

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0032006 "regulation of TOR signaling cascade" evidence=ISO

UNIPROTKB|Q9UK97 FBXO9 "F-box only protein 9" [Homo sapiens (taxid:9606)]

 Score = 243 (90.6 bits), Expect = 4.6e-20, P = 4.6e-20
 Identities = 53/139 (38%), Positives = 77/139 (55%)

Query:     6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
             L + S VCR +    R+P  WR ACLK W  S +    K++   Y  SWR+M+L RPR+R
Sbjct:   213 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCI----KLVP--YT-SWREMFLERPRVR 265

Query:    66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
              DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + ++ + +   + 
Sbjct:   266 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPQSIVPRLR 325

Query:   125 FRAAKADCVFTGHYTLSEE 143
              R  + D +  GHY LS++
Sbjct:   326 TRNTRTDAILLGHYRLSQD 344

GO:0004842 "ubiquitin-protein ligase activity" evidence=NAS

GO:0000151 "ubiquitin ligase complex" evidence=NAS

GO:0016567 "protein ubiquitination" evidence=IDA;NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA

GO:0032006 "regulation of TOR signaling cascade" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q3ZBT2 FBXO9 "F-box only protein 9" [Bos taurus (taxid:9913)]

 Score = 241 (89.9 bits), Expect = 7.0e-20, P = 7.0e-20
 Identities = 53/139 (38%), Positives = 77/139 (55%)

Query:     6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
             L + S VCR +    R+P  WR ACLK W  S +    K++   Y  SWR+M+L RPR+R
Sbjct:   203 LEQLSQVCRGFYICARDPEIWRLACLKVWGRSCI----KLVP--YT-SWREMFLERPRVR 255

Query:    66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
              DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + ++ + +   + 
Sbjct:   256 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYVRFFPDGHVMMLTTPEEPQSIVPRLR 315

Query:   125 FRAAKADCVFTGHYTLSEE 143
              R  + D +  GHY LS++
Sbjct:   316 TRNTRTDAILLGHYRLSQD 334

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

RGD|1310374 Fbxo9 "f-box protein 9" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 52/139 (37%), Positives = 75/139 (53%)

Query:     6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
             L + S VCR +    R+P  WR ACLK W  S +    K++      SWR+M+L RPR+R
Sbjct:   201 LEQLSLVCRGFYICARDPEIWRLACLKVWGRSCM----KLVPF---SSWREMFLERPRVR 253

Query:    66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
              DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + ++   +   + 
Sbjct:   254 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYIRFFPDGHVMMLTTPEEPPSIVPRLR 313

Query:   125 FRAAKADCVFTGHYTLSEE 143
              R  + D +  GHY LS++
Sbjct:   314 TRNTRTDAILLGHYRLSQD 332

GO:0005737 "cytoplasm" evidence=ISO;ISS

GO:0016567 "protein ubiquitination" evidence=IEA;ISO;ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISO;ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISO;ISS

UNIPROTKB|F6Y9J3 fbxo9 "F-box only protein 9" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 234 (87.4 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 52/139 (37%), Positives = 77/139 (55%)

Query:     6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
             L + S VC+ +    R+P  WR ACLK W  + V    KI+   Y  +WR+M+L RPR+R
Sbjct:   196 LEQLSLVCKGFYICARDPEIWRLACLKVWGRNCV----KIVP--YT-TWRQMFLERPRVR 248

Query:    66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
              DG+Y+S+ TYIR G           H V YYRY+RFFP G  +   + +  + +   + 
Sbjct:   249 FDGVYISKTTYIRQGEQSLDGFYRAWHQVEYYRYLRFFPDGHVMMLTTPEDPQTIVPRLR 308

Query:   125 FRAAKADCVFTGHYTLSEE 143
              + A+ D +  GHY LS++
Sbjct:   309 TKNARTDAMLLGHYRLSQD 327

GO:0005737 "cytoplasm" evidence=ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0032006 "regulation of TOR signaling cascade" evidence=ISS

ZFIN|ZDB-GENE-030131-4194 fbxo9 "F-box protein 9" [Danio rerio (taxid:7955)]

 Score = 227 (85.0 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 52/147 (35%), Positives = 78/147 (53%)

Query:     6 LGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR 65
             L + S VCR +    R+P  WR+ACL+ W  S      K+L   Y  SWR+M+L RPR+R
Sbjct:   186 LEQLSLVCRGFYICARDPEIWRSACLRVWGRSCT----KMLP--YS-SWREMFLERPRVR 238

Query:    66 IDGLYVSRNTYIRAGVAEWK-ITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMN 124
              DG+Y+S+ +YIR G           H V YYRY+RFFP G+ +   + +        + 
Sbjct:   239 FDGVYISKTSYIRQGEESLDGFYRAWHQVEYYRYLRFFPDGQVMMLTTPEDPLVTVPRLR 298

Query:   125 FRAAKADCVFTGHYTLSEEKVEAAVLY 151
              + ++ D +  GHY LS++      +Y
Sbjct:   299 SKNSRMDSIMFGHYRLSQDTDNQTKVY 325

GO:0032006 "regulation of TOR signaling cascade" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA;ISS

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0019005 "SCF ubiquitin ligase complex" evidence=ISS

POMBASE|SPCC1827.08c pof7 "F-box protein Pof7" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 184 (69.8 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 48/180 (26%), Positives = 86/180 (47%)

Query:     6 LGKASCVCRKWKYTIRNPVFWRNACL-----KAWQLSGVVENYKILQSRYEGSWRKMWLL 60
             L   +  C+ +   +R    +R+ C      K WQ S +    + L  +Y+ SW+ ++L 
Sbjct:   137 LSSIALTCKHFAKALRADSLYRSFCYCSCEQKEWQQS-IKSIEEELVEKYQQSWKTLFLK 195

Query:    61 RPRIRIDGLYVSRNTYIRAGVAEWKITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVA 120
             +PR R DG Y+S   Y R G ++     P+H++ YYRY+R +P+   I   SS +  DV 
Sbjct:   196 KPRSRFDGCYISVCRYFRPGTSDTSWNQPIHLITYYRYLRLYPNSTCIVYQSSNEPNDVV 255

Query:   121 K---IMN---FRAAKADCVF-------TGHYTLSEEKVEAAVLYPGLRPTVLRIRLRLRG 167
             +   + N   F    +  +F       TG ++++    E  ++YP  +      +L++RG
Sbjct:   256 RNFSVQNTSLFSPMSSSPMFSNGNVALTGSWSMTPSG-EMLIVYPASQTYTYVQKLQVRG 314

GO:0000151 "ubiquitin ligase complex" evidence=ISM

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISM

GO:0030674 "protein binding, bridging" evidence=ISM

ASPGD|ASPL0000006907 fbx1 [Emericella nidulans (taxid:162425)]

 Score = 142 (55.0 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 29/63 (46%), Positives = 38/63 (60%)

Query:    53 SWRKMWLLRPRIRIDGLYVSRNTYIRAGVAE------WKITNPVHIVCYYRYMRFFPSGR 106
             SW +++   PRIR  G+Y+S   Y RAG A       W   +P+HIV YYRY+RF+P G 
Sbjct:   301 SWSEVFHSFPRIRFTGVYISTVNYTRAGAASAYSNISWN--SPIHIVTYYRYLRFYPDGT 358

Query:   107 FIY 109
              IY
Sbjct:   359 VIY 361

GO:0003674 "molecular_function" evidence=ND

GO:0005829 "cytosol" evidence=IEA

GO:0019005 "SCF ubiquitin ligase complex" evidence=IEA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0071406 "cellular response to methylmercury" evidence=IEA

SGD|S000004087 HRT3 "Putative SCF-ubiquitin ligase F-box protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 121 (47.7 bits), Expect = 5.2e-05, P = 5.2e-05
 Identities = 29/92 (31%), Positives = 50/92 (54%)

Query:    33 AWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAGV-AEWKIT--NP 89
             A  L+G+ +     +  + G   +M   RP I+ +G+Y+S   Y+R G  AE  ++   P
Sbjct:   161 AMDLNGITDINTFEKEIWRGDDYRMLRERPYIKFEGVYISVVNYVRYGSNAESSLSLLKP 220

Query:    90 VHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAK 121
             VH++ YYRY RF+ +G+ +   S+ +   V K
Sbjct:   221 VHMITYYRYFRFYENGQCLRLLSTDEPSAVVK 252

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA;IPI

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=ISA

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISA

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IGI;ISA

GO:0071406 "cellular response to methylmercury" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XI00	SKI32_ARATH	No assigned EC number	0.7960	1.0	0.7713	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_102442.1 annotation not avaliable (328 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam12937	47	pfam12937, F-box-like, F-box-like	1e-05
pfam00646	48	pfam00646, F-box, F-box domain	2e-04
smart00256	41	smart00256, FBOX, A Receptor for Ubiquitination Ta	0.002

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 41.0 bits (97), Expect = 1e-05
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 2  SPYDLGKASCVCRKWKYTIRNPVFWRNACLK 32
           P DL + + VCR+W+    +   WR  CL+
Sbjct: 17 DPRDLLRLALVCRRWRELASDDSLWRRLCLR 47

This is an F-box-like family. Length = 47

>gnl|CDD|201368 pfam00646, F-box, F-box domain

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 8/31 (25%), Positives = 16/31 (51%)

Query: 1  MSPYDLGKASCVCRKWKYTIRNPVFWRNACL 31
          + P DL + S V ++W+  + +   W+   L
Sbjct: 18 LDPKDLLRLSLVSKRWRSLVDSLKLWKKRLL 48

This domain is approximately 50 amino acids long, and is usually found in the N-terminal half of a variety of proteins. Two motifs that are commonly found associated with the F-box domain are the leucine rich repeats (LRRs; pfam00560 and pfam07723) and the WD repeat (pfam00400). The F-box domain has a role in mediating protein-protein interactions in a variety of contexts, such as polyubiquitination, transcription elongation, centromere binding and translational repression. Length = 48

>gnl|CDD|197608 smart00256, FBOX, A Receptor for Ubiquitination Targets

 Score = 34.7 bits (81), Expect = 0.002
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 1  MSPYDLGKASCVCRKWKYTIRNPVFWRN 28
          + P DL +   V RKW+  I +  FW  
Sbjct: 13 LDPKDLLRLRKVSRKWRSLIDSHDFWFK 40

Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG2997	366	consensus F-box protein FBX9 [General function pre	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.27
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	96.99
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	96.83
KOG3926	332	consensus F-box proteins [Amino acid transport and	94.33
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	84.92
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	83.66
PF06881	109	Elongin_A: RNA polymerase II transcription factor	81.36

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=100.00  E-value=6.9e-62  Score=447.25  Aligned_cols=221  Identities=36%  Similarity=0.596  Sum_probs=204.3

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCchhhhhhhccCCCCcHHHHHHhcccCccCeEEEeecceeeCC
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIRIDGLYVSRNTYIRAG   80 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~~~~~~~~y~~sWr~Mf~~RPRIRfdG~YIS~~~Y~R~G   80 (253)
                      ||.+||+++|+|||+|++++++|++||.+|+++|+..++..+.+++++.|.+|||+||++||||||||||||+|+|+|+|
T Consensus       127 ~d~rsL~~~s~vCr~F~~~~R~~~lwR~aC~KvW~~s~~~ln~~~~~sky~~SWR~Mfl~RpRvrFdG~YIS~~tYiR~G  206 (366)
T KOG2997|consen  127 LDLRSLEQLSLVCRGFYKCARDPELWRLACLKVWQRSCIKLNPKILQSKYYTSWREMFLERPRVRFDGVYISKTTYIRQG  206 (366)
T ss_pred             cchhhHHHhHhhHHHHHHHHcChHHHHHHHHHHHHHhhhccchhhhhhHHHhHHHHHHhhCcceeecceEEEEEeEeecC
Confidence            68999999999999999999999999999999999988888888888999999999999999999999999999999999


Q ss_pred             cccc-cccCceEEEEEeeeEEEecCCcEEEeeccccHHHHhhhhcccccCCCceEEEEEEEeCCEEEEEEecCC------
Q 025376           81 VAEW-KITNPVHIVCYYRYMRFFPSGRFIYKNSSQKIKDVAKIMNFRAAKADCVFTGHYTLSEEKVEAAVLYPG------  153 (253)
Q Consensus        81 ~~~~-~~~~Pvh~VtYYRYLRFfpDGtvl~llS~~~P~~VV~~l~~~~~~~~~~~~G~~~l~~d~v~~~v~~~g------  153 (253)
                      ++++ +|++|||+|||||||||||||+||+++|++||++||++|+.++.+...++.|+|+++++.|++++..++      
T Consensus       207 ~~~~~~~~~PVHlV~YYRYiRFyP~G~~l~~~SsdEP~dvVk~~s~~Nt~~~s~~~g~y~ls~~dv~~al~~~~~~~ps~  286 (366)
T KOG2997|consen  207 ENSLDSFYRPVHLVEYYRYIRFYPDGHVLMLTSSDEPQDVVKRLSTRNTRRDSILLGHYRLSQSDVFAALTKSKERTPSD  286 (366)
T ss_pred             chhhhhhcCcceeeEEEEEEEecCCCcEEEEeCCcChHHHHHhhhhccCcchhhhcccccccCCchhhhhccCcccCchh
Confidence            9999 999999999999999999999999999999999999999999988899999999999988877776321      


Q ss_pred             ------------CcceEEEEEEEEecCCCCccceeEEeEeEEecCCCCCCCCCCCcccccccccccCCCCCCCCCccccc
Q 025376          154 ------------LRPTVLRIRLRLRGTTAGANNRMDLLSLVTSGMNDNEVNGHDEDILGVVEGWQDDETHNPDVPAVSHK  221 (253)
Q Consensus       154 ------------~~~~~f~~~L~lrs~~~g~nnkL~w~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (253)
                                  ..+++|.++|+|++++..+.|+|+|.++.                   +++|+..|+++++.|++.|+
T Consensus       287 ~~~~r~~~~~v~~~s~tfl~~l~l~~~g~rr~~~L~W~~~~-------------------~~~~~d~et~~se~~l~~~k  347 (366)
T KOG2997|consen  287 YKYRRGRRVPVQEASQTFLVELQLCGSGHRRFNKLKWIHHS-------------------ITYKSDKETAVSEFPLTKMK  347 (366)
T ss_pred             hhhhcccccccccccceeEEEEEEecccchhhhhheeeeee-------------------eeEeecccccccCCcccccc
Confidence                        12467999999999999999999998876                   14677889999999999999


Q ss_pred             CCCcceeeeecccccccccC
Q 025376          222 RGLTPFVFVPFEEVETSVLN  241 (253)
Q Consensus       222 rg~~~~~fvp~e~~~~~~ln  241 (253)
                      +| .-|++||+++++.++||
T Consensus       348 ~~-~~FsrV~Sy~~d~e~l~  366 (366)
T KOG2997|consen  348 TP-LFFSRVKSYTADSERLL  366 (366)
T ss_pred             Cc-ceEEEeeeeeccccccC
Confidence            99 88999999999988875

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.27  E-value=5.1e-07  Score=61.11  Aligned_cols=32  Identities=38%  Similarity=0.941  Sum_probs=28.1

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHh
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLK   32 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~   32 (253)
                      ||+.++.++|+|||+|+.++.++.+||++|.+
T Consensus        16 L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~r   47 (47)
T PF12937_consen   16 LDPRDLLRLSLVCRRWRRIANDNSLWRRLCLR   47 (47)
T ss_dssp             S-HHHHHHHTTSSHHHHHHHTCCCHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHCChhhhhhhccC
Confidence            68999999999999999999999999999974

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=96.99  E-value=0.0006  Score=45.62  Aligned_cols=31  Identities=26%  Similarity=0.675  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHH
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACL   31 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~   31 (253)
                      ||+.++.++++|||+|+.++.+..+|+..|.
T Consensus        18 l~~~~~~~l~~vsk~~~~~~~~~~~~~~~~r   48 (48)
T PF00646_consen   18 LDPKDLLRLSLVSKRWRSLVDSPRLWKKIIR   48 (48)
T ss_dssp             S-HHHHHHHCTT-HHHHHHHTTHHHHHHHH-
T ss_pred             CcHHHHHHHHHHhhHHHHHHcCCCccHHHhC
Confidence            6899999999999999999999999999874

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=96.83  E-value=0.001  Score=42.51  Aligned_cols=28  Identities=32%  Similarity=0.661  Sum_probs=26.1

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHH
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRN   28 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~   28 (253)
                      |++.++.++++|||.|+.++.++.+|+.
T Consensus        13 l~~~d~~~~~~vc~~~~~~~~~~~~~~~   40 (41)
T smart00256       13 LPPKDLLRLRKVSRRWRSLIDSHDFWFK   40 (41)
T ss_pred             CCHHHHHHHHHHHHHHHHHhcChhhhhc
Confidence            6889999999999999999999999975

>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]

Probab=94.33  E-value=0.033  Score=51.93  Aligned_cols=58  Identities=14%  Similarity=0.303  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCchhhhhhhccCCCCcHHHHHHh
Q 025376            2 SPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL   60 (253)
Q Consensus         2 Dp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~~~~~~~~y~~sWr~Mf~~   60 (253)
                      |-+||+.+|+|=-.++.|..+..|||.||...|+.-.+. ..+++.+.+.-+||+||-+
T Consensus       219 Dh~dL~s~aqa~etl~~l~~e~~iWkkLcqfHF~erQi~-~~l~l~k~~q~dWkqmyf~  276 (332)
T KOG3926|consen  219 DHRDLESLAQAWETLAKLSEERRIWKKLCQFHFNERQIH-TILILSKKGQKDWKQMYFQ  276 (332)
T ss_pred             CcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHH-HhhhhccccchhHHHHHHH
Confidence            668999999999999999998899999999877542221 1223445555789999865

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.92  E-value=0.35  Score=46.32  Aligned_cols=29  Identities=24%  Similarity=0.453  Sum_probs=25.7

Q ss_pred             HHHHHHHHHhChHHHHhccCchHHHHHHH
Q 025376            3 PYDLGKASCVCRKWKYTIRNPVFWRNACL   31 (253)
Q Consensus         3 p~sL~rlS~VCk~f~~l~~~~~lWR~lC~   31 (253)
                      -.+|.++|.|||+|+.++.++.+|..+=+
T Consensus       115 kk~LL~~~~VC~Rfyr~~~de~lW~~lDl  143 (419)
T KOG2120|consen  115 KKELLKVSGVCKRFYRLASDESLWQTLDL  143 (419)
T ss_pred             HHHHHHHHHHHHHHhhccccccceeeecc
Confidence            35799999999999999999999987754

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=83.66  E-value=0.88  Score=44.16  Aligned_cols=32  Identities=19%  Similarity=0.640  Sum_probs=30.0

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHh
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLK   32 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~   32 (253)
                      ||..||..+-+|||.|..+..++.+||+|-.+
T Consensus        94 ld~~sLc~celv~k~W~r~l~dg~~WKkLie~  125 (499)
T KOG0281|consen   94 LDALSLCACELVCKEWKRVLSDGMLWKKLIER  125 (499)
T ss_pred             cchhhhhHHHHHHHHHHHHhccchHHHHHHHH
Confidence            68999999999999999999999999999765

>PF06881 Elongin_A: RNA polymerase II transcription factor SIII (Elongin) subunit A; InterPro: IPR010684 This family represents a conserved region within RNA polymerase II transcription factor SIII (Elongin) subunit A

Probab=81.36  E-value=1.9  Score=34.27  Aligned_cols=52  Identities=13%  Similarity=0.238  Sum_probs=31.9

Q ss_pred             CHHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCchhhhhhhccCCCCcHHHHHHh
Q 025376            2 SPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL   60 (253)
Q Consensus         2 Dp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~~~~~~~~y~~sWr~Mf~~   60 (253)
                      .|.-|.++-.-|..+  .-.++.||+++|.+-|+......    .. .-..+||.||..
T Consensus        20 ~~~QL~~iE~~np~l--~~~tdeLW~~~i~rdFp~~~~~~----~~-~~~~~Wr~~Y~~   71 (109)
T PF06881_consen   20 SPEQLRRIEDNNPHL--IEDTDELWKKLIKRDFPEESKRQ----KP-KEPESWRELYEK   71 (109)
T ss_pred             CHHHHHHHHHhCCCc--chhhHHHHHHHHHhHCcChhhcc----cc-cccchHHHHHHH
Confidence            455566666666322  23366999999999997521111    11 123699999875

In mammals, the Elongin complex activates elongation by RNA polymerase II by suppressing transient pausing of the polymerase at many sites within transcription units. Elongin is a heterotrimer composed of A, B, and C subunits of 110, 18, and 15 kilodaltons, respectively. Subunit A has been shown to function as the transcriptionally active component of Elongin [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus, 0016021 integral to membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	8e-05
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	1e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	3e-04

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 42.2 bits (98), Expect = 8e-05
 Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 1   MSPYDLGKA-SCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWL 59
           +   +L +A   VC +WK  +     W   C +   +       +         W++ + 
Sbjct: 66  LPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVP------EGSADEERDHWQQFYF 119

Query: 60  LRPRIRIDGLYVSRNTYIRAGVAEWKITNP 89
           L  R       + RN      +  W     
Sbjct: 120 LSKR----RRNLLRNPCGEEDLEGWSDVEH 145

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 37.6 bits (88), Expect = 1e-04
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 1  MSPYDLGKASCVCRKWKYTIRNPVFWRN 28
          +   +L K S VC++W     +   W+ 
Sbjct: 24 LCLPELLKVSGVCKRWYRLASDESLWQT 51

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 1  MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYK 44
          +SP+DL +       W  T+R+P+ WR   L+       V+   
Sbjct: 20 LSPHDLCQLGSTNHYWNETVRDPILWRYFLLRDLPSWSSVDWKS 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	98.15
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.8
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.5
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.47
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.38
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.17
4hfx_A	97	Transcription elongation factor B polypeptide 3; s	90.13
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	86.2

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=98.15  E-value=1.2e-06  Score=80.36  Aligned_cols=59  Identities=19%  Similarity=0.457  Sum_probs=46.2

Q ss_pred             CCHHHHH-HHHHhChHHHHhccCchHHHHHHHhhccCCCchhhhhhhccCCCCcHHHHHHhcccCc
Q 025376            1 MSPYDLG-KASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLLRPRIR   65 (253)
Q Consensus         1 LDp~sL~-rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~~~~~~~~y~~sWr~Mf~~RPRIR   65 (253)
                      |++.+|. |+++|||.|+.|+.++.+||+.|.+.+-.....      ......+||++|+.+|+-|
T Consensus        66 Lp~~~L~~r~~~VCk~Wr~l~~~~~~w~~~~~~~g~~~~~~------~~~~~~~Wk~~y~~~~~gR  125 (297)
T 2e31_A           66 LPATELVQACRLVCLRWKELVDGAPLWLLKCQQEGLVPEGS------ADEERDHWQQFYFLSKRRR  125 (297)
T ss_dssp             SCHHHHHHTGGGTCHHHHHHHTSHHHHHHHHHHTTCCCC-----------CCSCHHHHHHHHHHCC
T ss_pred             CCHHHHHHHHHHHhHHHHHHhcChHHHHHHhhccCcccccc------cCCCCCChhhhheheeccc
Confidence            7899999 999999999999999999999999874322111      1123578999999998665

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=97.80  E-value=7.6e-06  Score=55.40  Aligned_cols=29  Identities=24%  Similarity=0.567  Sum_probs=25.0

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHH
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNA   29 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~l   29 (253)
                      |++.++.++|+|||.|+.++.++.+||.+
T Consensus        24 L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A           24 LCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             SCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            68899999999999999999999999975

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.50  E-value=4e-05  Score=69.31  Aligned_cols=34  Identities=18%  Similarity=0.483  Sum_probs=32.3

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHhhc
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAW   34 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w   34 (253)
                      ||+.+|.++|+|||+|+.++.++.+||++|.+.+
T Consensus        30 l~~~~l~~~~~v~~~w~~~~~~~~~w~~~~~~~~   63 (435)
T 1p22_A           30 LDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMV   63 (435)
T ss_dssp             CCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhc
Confidence            7999999999999999999999999999999864

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.47  E-value=6.4e-05  Score=67.87  Aligned_cols=64  Identities=22%  Similarity=0.517  Sum_probs=43.5

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCch-hhhhh-hccCCCCcHHHHHHhcccC
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVV-ENYKI-LQSRYEGSWRKMWLLRPRI   64 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~-~~~~~-~~~~y~~sWr~Mf~~RPRI   64 (253)
                      ||+.+|.++++|||.|+.++.++.+||++|.+........ ...+. -......+||..|.+|.++
T Consensus        34 l~~~~l~~~~~v~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wk~~~~~~~~~   99 (445)
T 2ovr_B           34 LEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRI   99 (445)
T ss_dssp             SCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhHHHHhhcCchhHhhhheeecccccccccccceecCCCccCCcHHHHHhhhhhh
Confidence            7999999999999999999999999999998643221110 00000 0111236799998876543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.38  E-value=8.5e-05  Score=68.47  Aligned_cols=32  Identities=34%  Similarity=0.755  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHh
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLK   32 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~   32 (253)
                      |+|.+|+++++|||.|+.++.++.|||.+|.+
T Consensus        20 L~p~DL~~l~~vcr~Wr~la~D~~LWr~~l~r   51 (312)
T 3l2o_B           20 LSPHDLCQLGSTNHYWNETVRDPILWRYFLLR   51 (312)
T ss_dssp             SCHHHHHHHHTTCHHHHHHHTCHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHHHHhccchHHHHHHhc
Confidence            79999999999999999999999999999996

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.17  E-value=0.00021  Score=64.40  Aligned_cols=34  Identities=18%  Similarity=0.396  Sum_probs=31.5

Q ss_pred             CCHHHHHHHHHhChHHHHhccC-chHHHHHHHhhc
Q 025376            1 MSPYDLGKASCVCRKWKYTIRN-PVFWRNACLKAW   34 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~-~~lWR~lC~~~w   34 (253)
                      ||+.+|.++++|||.|+.++.+ +.+||++|++..
T Consensus        30 l~~~~l~~~~~v~~~w~~~~~~~~~~w~~~~~~~~   64 (464)
T 3v7d_B           30 LQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN   64 (464)
T ss_dssp             SCHHHHHHHHTTCHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhccc
Confidence            7999999999999999999998 799999998654

>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}

Probab=90.13  E-value=0.26  Score=38.02  Aligned_cols=47  Identities=19%  Similarity=0.360  Sum_probs=24.0

Q ss_pred             HHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCchhhhhhhccCCCCcHHHHHHh
Q 025376            3 PYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL   60 (253)
Q Consensus         3 p~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~~~~~~~~y~~sWr~Mf~~   60 (253)
                      |.-|.++=.-|-  ..+-.++.||+.+|.+-|+....         .-..|||+||..
T Consensus        27 p~QL~~IE~~nP--~L~~dTdeLWk~~c~rdF~~~~p---------~e~esWRelY~r   73 (97)
T 4hfx_A           27 PDQLYRIEEYNH--VLIEETDQLWKVHCHRDFKEERP---------EEYESWREMYLR   73 (97)
T ss_dssp             HHHHHHHHTC--------CCHHHHHHHC----CCSCC---------CSSSCHHHHHHH
T ss_pred             HHHHHHHHHhCc--ccchhhHHHHHHHHHhHCcccCC---------CCCCCHHHHHHH
Confidence            444444444443  22345669999999999975321         234799999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=86.20  E-value=0.19  Score=43.57  Aligned_cols=31  Identities=26%  Similarity=0.539  Sum_probs=27.0

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHH
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACL   31 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~   31 (253)
                      |+..++.++|+|||+|+.++.++.+|+.+-.
T Consensus        24 L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l   54 (336)
T 2ast_B           24 LCLPELLKVSGVCKRWYRLASDESLWQTLDL   54 (336)
T ss_dssp             SCHHHHHHTTSSCHHHHHHHTCSTTSSEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHhcCchhheeecc
Confidence            6788999999999999999988988886544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d2ovrb1	102	a.158.1.1 (B:2263-2364) F-box/WD repeat-containing	6e-08
d1p22a1	118	a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (b	2e-04
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	5e-04
d1nexb1	100	a.158.1.1 (B:270-369) Cdc4 F-box and linker domain	0.003

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 6e-08
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 1   MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENY--KILQSRYEGSWRKMW 58
           + P DL +A+  CR W+    + + WR  C +      +       I        W+  +
Sbjct: 34  LEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAY 93

Query: 59  LLRPRIR 65
           + + RI 
Sbjct: 94  IRQHRID 100

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 8/65 (12%), Positives = 20/65 (30%), Gaps = 6/65 (9%)

Query: 1  MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVENYKILQSRYEGSWRKMWLL 60
          +    L  A  VC++W     + + W+    +  +   +           E      +L 
Sbjct: 30 LDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRTDSLWRGL------AERRGWGQYLF 83

Query: 61 RPRIR 65
          + +  
Sbjct: 84 KNKPP 88

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (80), Expect = 5e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 1  MSPYDLGKASCVCRKWKYTIRNPVFW 26
          +   +L K S VC++W     +   W
Sbjct: 16 LCLPELLKVSGVCKRWYRLASDESLW 41

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 100

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 10/73 (13%), Positives = 21/73 (28%), Gaps = 8/73 (10%)

Query: 1  MSPYDLGKASCVCRKWKYTIRN-PVFWRNACLK-AWQLSGVVENY------KILQSRYEG 52
          +   D+  +  V + W   IR     W+   +   +       +       K  +   + 
Sbjct: 21 LQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISENFVSPKGFNSLNLKLSQKYPKLSQQD 80

Query: 53 SWRKMWLLRPRIR 65
            R  +L    I 
Sbjct: 81 RLRLSFLENIFIL 93

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.08
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	98.53
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.0
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.92

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.8e-11  Score=91.79  Aligned_cols=67  Identities=22%  Similarity=0.488  Sum_probs=50.7

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHhhccCCCchhh-hh-hhccCCCCcHHHHHHhcccCccC
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQLSGVVEN-YK-ILQSRYEGSWRKMWLLRPRIRID   67 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~~~~~~~-~~-~~~~~y~~sWr~Mf~~RPRIRfd   67 (253)
                      ||+.||+++|+|||+|+.++.++.+||.+|.+.|........ .. ........+||++|+++.|+|+|
T Consensus        34 Ld~~dL~~~~~vcr~w~~l~~~~~lW~~~~~r~~~~~~~~~~~~~~~~~~~~~~~WK~~Y~~~~~l~~n  102 (102)
T d2ovrb1          34 LEPKDLLQAAQTCRYWRILAEDNLLWREKCKEEGIDEPLHIKRRKVIKPGFIHSPWKSAYIRQHRIDTN  102 (102)
T ss_dssp             SCHHHHHHHTTSCHHHHHHHTCSHHHHHHHTTTTCCSCCCCCC--CCSSCCCCCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcCCCCchHHHhhhcccCCCCCcCHHHHHHHHHHHhcC
Confidence            799999999999999999999999999999987643221110 01 11123346899999999998865

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.53  E-value=5.4e-09  Score=80.29  Aligned_cols=36  Identities=17%  Similarity=0.458  Sum_probs=33.3

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHHHHHHHhhccC
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFWRNACLKAWQL   36 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lWR~lC~~~w~~   36 (253)
                      ||+.||.++|+|||.|+.++.++.+||++|.+.+..
T Consensus        30 Ld~~dL~~~s~Vck~W~~l~~d~~lWk~~~~~~~~~   65 (118)
T d1p22a1          30 LDAKSLCAAELVCKEWYRVTSDGMLWKKLIERMVRT   65 (118)
T ss_dssp             CCHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHTS
T ss_pred             CCHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhhccc
Confidence            799999999999999999999999999999886543

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=1.7e-06  Score=64.27  Aligned_cols=34  Identities=15%  Similarity=0.378  Sum_probs=30.3

Q ss_pred             CCHHHHHHHHHhChHHHHhc-cCchHHHHHHHhhc
Q 025376            1 MSPYDLGKASCVCRKWKYTI-RNPVFWRNACLKAW   34 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~-~~~~lWR~lC~~~w   34 (253)
                      ||+.||.++|+|||+|+.++ .++.|||++|...+
T Consensus        21 Ld~~dL~~~s~Vcr~W~~~~~~d~~LWr~l~~~~~   55 (100)
T d1nexb1          21 LQFEDIINSLGVSQNWNKIIRKSTSLWKKLLISEN   55 (100)
T ss_dssp             SCHHHHHHHTTTCHHHHHHHHTCSHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHcC
Confidence            79999999999999999886 56799999998754

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.8e-06  Score=55.01  Aligned_cols=26  Identities=27%  Similarity=0.622  Sum_probs=25.1

Q ss_pred             CCHHHHHHHHHhChHHHHhccCchHH
Q 025376            1 MSPYDLGKASCVCRKWKYTIRNPVFW   26 (253)
Q Consensus         1 LDp~sL~rlS~VCk~f~~l~~~~~lW   26 (253)
                      ||+.+|.++|+|||+|+.++.++.+|
T Consensus        16 L~~~dl~~~~~Vcr~w~~l~~~~~lW   41 (41)
T d1fs1a1          16 LCLPELLKVSGVCKRWYRLASDESLW   41 (41)
T ss_dssp             SCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCcccC
Confidence            78999999999999999999999998