Citrus Sinensis ID: 025382

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPPPIAPPPAKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQLNSNQFLC
Secondary Structure (PSIPRED)
ccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccEEEEEEccccccEEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHEEHcccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccccccccccccccccHHHcHHHcccHHHccccccccccccccccccccccccccccccccccHHHHHccHHHHHHccccccccccccccccccccHHHHHHccccccccccEEc
Coil and Loop (DISEMBL)
mcggaliadydevrpvrrerkltsedlwsefgsisdllgldyngkshpkqplkvknekaedssnkaARTEWKEKKTQRVRKNVYRgirqrpwgkwaaeirdpYKGVRVWLGTFNTAEEAARAYDEAAKRIRgdkaklnfaqppppiapppakkrcmpspeltqprfetigtppapapspwvgfgyqnefyqpravddefELSQQISRLESflgleplmsqpsgnvaggcdsvdfwmLDDVAATQQlnsnqflc
Flexible Loop (DISEMBL)
mcggaliadydevrpvrrerkltsedlwseFGSISDLLGLDYNGKshpkqplkvknekaedssnkaartewkekktqrvrknvyrgirqrpwgkwaaeirdpYKGVRVWLGTFNTAEEAARAYDEAAKRIRGdkaklnfaqppppiapppakkrCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQlnsnqflc
Low Complexity Region (SEG)
MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTaeeaaraydeaaKRIRGDKAKLNFaqppppiapppaKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQLNSNQFLC
Disordered region (IsUnstruct)
*****LIADY***************DLWSEFGSISDLLGLDY*************************************RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARA********************************************************PWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPL*****GNVAGGCDSVDFWMLDDVAAT**********
Disordered Region (DISOPRED)
MCGGALIADYDEVR*************************************************************************RQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFA****************************************************************************************CDSVDFWMLDDVAATQQL*****L*
Disordered Region (DISEMBL)
MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHP*******************************RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPPPIAPPPAKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQLNSNQFLC
Disordered Region (DISPRO)
*C**ALI**YDEVR****************************************************************VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPP****************************************************DEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQLNSNQFLC
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPPPIAPPPAKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGCDSVDFWMLDDVAATQQLNSNQFLC
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
P42736	248	Ethylene-responsive trans	yes	no	0.893	0.911	0.460	1e-49
O22259	171	Ethylene-responsive trans	no	no	0.415	0.614	0.496	4e-26
Q6K7E6	365	Ethylene-responsive trans	yes	no	0.343	0.238	0.663	6e-26
Q8H0T5	211	Ethylene-responsive trans	no	no	0.249	0.298	0.803	6e-23
P93007	218	Ethylene-responsive trans	no	no	0.308	0.357	0.630	3e-21
Q9FH54	248	Ethylene-responsive trans	no	no	0.241	0.245	0.737	1e-20
O82503	287	Ethylene-responsive trans	no	no	0.245	0.216	0.703	2e-20
Q9SUQ2	343	Ethylene-responsive trans	no	no	0.458	0.338	0.448	3e-20
Q9LYU3	212	Ethylene-responsive trans	no	no	0.237	0.283	0.75	4e-20
O80341	300	Ethylene-responsive trans	no	no	0.288	0.243	0.6	3e-19

>sp|P42736|RAP23_ARATH Ethylene-responsive transcription factor RAP2-3 OS=Arabidopsis thaliana GN=RAP2-3 PE=1 SV=2

 Score =  196 bits (499), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 121/263 (46%), Positives = 148/263 (56%), Gaps = 37/263 (14%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEF--GSISDLLGLDYNGKSHPKQPLKVKNEK 58
           MCGGA+I+DY  +    + RKLT+E+LWSE    +  D  G     K HP   + VK E 
Sbjct: 1   MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVKEEA 60

Query: 59  AEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEE 118
            +       + +  E   +R RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNTAEE
Sbjct: 61  VK-------KEQATEPGKRRKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 113

Query: 119 AARAYDEAAKRIRGDKAKLNF--------------AQPPPPIAPPPAKKRCMPS---PEL 161
           AA AYD AAK+IRGDKAKLNF                 P     PPAKK C+ S    EL
Sbjct: 114 AAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPRSTDQPPAKKVCVVSQSESEL 173

Query: 162 TQPRFETIGTPPAPAPSPWVGFGYQNEFYQ-PRAVDDEFELSQQISRLESFLGLEPLMSQ 220
           +QP F          P   +GFG  +EF       + +++L QQIS LESFL L+   ++
Sbjct: 174 SQPSF----------PVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAE 223

Query: 221 PSGNVAGGCDSVDFWMLDDVAAT 243
               +      VD WMLDDV A+
Sbjct: 224 QPSQLDESVSEVDMWMLDDVIAS 246

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|O22259|ERF71_ARATH Ethylene-responsive transcription factor ERF071 OS=Arabidopsis thaliana GN=ERF071 PE=2 SV=1

 Score =  118 bits (295), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 69/139 (49%), Positives = 84/139 (60%), Gaps = 34/139 (24%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAE 60
           MCGGA+I+D+                +WS+  S    LG   + K   ++P+ V      
Sbjct: 1   MCGGAIISDF----------------IWSKSESEPSQLGSVSSRK--KRKPVSVS----- 37

Query: 61  DSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAA 120
                      +E+  +R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF TA+EAA
Sbjct: 38  -----------EERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAA 86

Query: 121 RAYDEAAKRIRGDKAKLNF 139
           RAYD AA +IRG KAKLNF
Sbjct: 87  RAYDVAAIKIRGRKAKLNF 105

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K7E6|ERF1_ORYSJ Ethylene-responsive transcription factor 1 OS=Oryza sativa subsp. japonica GN=EREBP1 PE=1 SV=1

 Score =  117 bits (294), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 61/92 (66%), Positives = 68/92 (73%), Gaps = 5/92 (5%)

Query: 74  KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGD 133
           K  +R RKN +RGIRQRPWGKWAAEIRDP KGVRVWLGTFN+AEEAARAYD  A+RIRG 
Sbjct: 110 KSAKRKRKNQFRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNSAEEAARAYDAEARRIRGK 169

Query: 134 KAKLNFAQPPPPIAPPPAKKRCMPSPELTQPR 165
           KAK+NF     P AP  A+KR   S     P+
Sbjct: 170 KAKVNF-----PEAPTTAQKRRAGSTTAKAPK 196

Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8H0T5|ERF73_ARATH Ethylene-responsive transcription factor ERF073 OS=Arabidopsis thaliana GN=ERF073 PE=2 SV=1

 Score =  107 bits (268), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 53/66 (80%), Positives = 56/66 (84%), Gaps = 3/66 (4%)

Query: 74  KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGD 133
           KK Q  R   Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNTAEEAARAYD  AKRIRG 
Sbjct: 18  KKKQSSR---YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAEEAARAYDLEAKRIRGA 74

Query: 134 KAKLNF 139
           KAKLNF
Sbjct: 75  KAKLNF 80

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/84 (63%), Positives = 59/84 (70%), Gaps = 6/84 (7%)

Query: 72  KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIR 131
           +EK   R R   YRG+RQRPWGKWAAEIRDP K  RVWLGTF+TAEEAA AYD+AA   R
Sbjct: 60  QEKSNSRQRN--YRGVRQRPWGKWAAEIRDPNKAARVWLGTFDTAEEAALAYDKAAFEFR 117

Query: 132 GDKAKLNFAQP----PPPIAPPPA 151
           G KAKLNF +     P  + P PA
Sbjct: 118 GHKAKLNFPEHIRVNPTQLYPSPA 141

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH54|EF114_ARATH Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 50/61 (81%)

Query: 79  VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLN 138
           +R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF TAE AA AYDEAA + +G KAKLN
Sbjct: 85  LRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLN 144

Query: 139 F 139
           F
Sbjct: 145 F 145

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O82503|CRF1_ARATH Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 53/64 (82%), Gaps = 2/64 (3%)

Query: 84  YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPP 143
           +RG+RQRPWGKWAAEIRDP + VRVWLGTF+TAEEAA  YD AA ++RG  A+LNF  PP
Sbjct: 87  FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF--PP 144

Query: 144 PPIA 147
           PP+ 
Sbjct: 145 PPVT 148

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUQ2|CRF2_ARATH Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=1 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/127 (44%), Positives = 75/127 (59%), Gaps = 11/127 (8%)

Query: 17  RRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARTEWKEKKT 76
           RR +K  +E ++ + G++  + G     +S  +Q   VK+E        A  T   EKK 
Sbjct: 66  RRVKKFVNE-VYLDSGAV--VTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKK- 121

Query: 77  QRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAK 136
                  +RG+RQRPWGKWAAEIRDP K VR+WLGT+NTAEEAA  YD AA ++RG  A 
Sbjct: 122 -------FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDAL 174

Query: 137 LNFAQPP 143
            NF+  P
Sbjct: 175 TNFSVTP 181

Component of the cytokinin signaling pathway involved in cotyledons, leaves, and embryos development. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYU3|EF113_ARATH Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 49/60 (81%)

Query: 80  RKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNF 139
           R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF TAEEAA AYD AA + +G KAKLNF
Sbjct: 35  RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score = 95.5 bits (236), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 51/85 (60%), Positives = 59/85 (69%), Gaps = 12/85 (14%)

Query: 67  ARTEWKEKKTQRVRKNV-----------YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFN 114
           A+TEW +   +  +  V           YRG+RQRPWGK+AAEIRDP K G RVWLGTF+
Sbjct: 128 AKTEWIQFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFD 187

Query: 115 TAEEAARAYDEAAKRIRGDKAKLNF 139
           TA EAARAYDEAA R+RG KA LNF
Sbjct: 188 TAIEAARAYDEAAFRLRGSKAILNF 212

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
62131147	256	putative ethylene responsive element bin	0.964	0.953	0.580	7e-72
55419648	255	AP2/EREBP transcription factor ERF-2 [Go	0.956	0.949	0.574	3e-70
62131149	261	putative ethylene responsive element bin	0.909	0.881	0.539	3e-61
225431800	259	PREDICTED: ethylene-responsive transcrip	0.920	0.899	0.523	2e-56
147819174	259	hypothetical protein VITISV_012017 [Viti	0.928	0.907	0.520	4e-55
59800345	262	ethylene-responsive element binding prot	0.909	0.877	0.552	8e-55
224110340	248	AP2/ERF domain-containing transcription	0.794	0.810	0.490	5e-53
292668907	274	AP2 domain class transcription factor [M	0.889	0.821	0.496	4e-50
224130484	255	AP2/ERF domain-containing transcription	0.893	0.886	0.501	7e-50
302398557	252	AP2D domain class transcription factor [	0.877	0.880	0.479	3e-49

>gi|62131147|gb|AAX68525.1| putative ethylene responsive element binding protein 2 [Gossypium hirsutum]

 Score =  276 bits (705), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 152/262 (58%), Positives = 181/262 (69%), Gaps = 18/262 (6%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDY-NGKS-------HPKQPL 52
           MCGGA+I+D+     V+R RKLT+EDLWSE  + SDLLGLDY NGK        + K   
Sbjct: 1   MCGGAIISDFI---AVKRGRKLTAEDLWSELDTFSDLLGLDYGNGKESSFTQSDNTKAGS 57

Query: 53  KVKN--EKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWL 110
           K KN  + A +++ K +R   KE KTQR RKN+YRGIRQRPWGKWAAEIRDP+KGVRVWL
Sbjct: 58  KAKNLEKVANETTQKTSRGREKEGKTQRTRKNIYRGIRQRPWGKWAAEIRDPHKGVRVWL 117

Query: 111 GTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPPPIAPPPAKKRCMPSPELTQPRFETIG 170
           GT+NTAEEAARAYDEAAKRIRG+KAKLNF Q  P +  PPAKKRCM +PELT P  E   
Sbjct: 118 GTYNTAEEAARAYDEAAKRIRGEKAKLNFPQ-TPHLTQPPAKKRCMMAPELTPPSSE--- 173

Query: 171 TPPAPAPSPWVGFGYQNEFYQP-RAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGC 229
           T   P P  ++GFGY+N  Y+P  A++ E EL +QIS LESFLGLEP  +    + +   
Sbjct: 174 TKSPPTPQLFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDETTTELSGSAEP 233

Query: 230 DSVDFWMLDDVAATQQLNSNQF 251
           DSVD WMLDD+    Q     F
Sbjct: 234 DSVDLWMLDDLVTHHQQQPQLF 255

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55419648|gb|AAV51937.1| AP2/EREBP transcription factor ERF-2 [Gossypium hirsutum]

 Score =  271 bits (692), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 151/263 (57%), Positives = 183/263 (69%), Gaps = 21/263 (7%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDY-NGKS------HPKQPLK 53
           MCGGA+I+D+     V+R RKLT+EDLWSE  + SDLLGLDY NGK       + K   K
Sbjct: 1   MCGGAIISDFI---AVKRGRKLTAEDLWSELDTFSDLLGLDYGNGKDPFTQFDNTKAGSK 57

Query: 54  VKN--EKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLG 111
            KN  +   +S+ K +R   KE KTQR RKN+YRGIR+RPWGKWAAEIRDP+KGVR+WLG
Sbjct: 58  AKNLEKVTNESTQKTSRGREKEGKTQRTRKNIYRGIRRRPWGKWAAEIRDPHKGVRIWLG 117

Query: 112 TFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPPPIAPPPAKKRCMPSPELTQPRFETIGT 171
           T+NTAEEAARAYDEAAKRIRGDKAKLNF Q  P +  PPAKKRCM +PELT P  E   T
Sbjct: 118 TYNTAEEAARAYDEAAKRIRGDKAKLNFPQ-TPRLTQPPAKKRCMMAPELTPPSSE---T 173

Query: 172 PPAPAPSPWVGFGYQNEFYQP-RAVDDEFELSQQISRLESFLGLEP--LMSQPSGNVAGG 228
              P P P++GFGY+N  Y+P  A++ E EL +QIS LESFLGLEP  + ++ SG+    
Sbjct: 174 KSPPTPQPFMGFGYENGVYRPSEAMESEMELKEQISSLESFLGLEPDEMTTELSGSAE-- 231

Query: 229 CDSVDFWMLDDVAATQQLNSNQF 251
            +SV+ WMLD +    Q     F
Sbjct: 232 PESVNLWMLDHLVTHHQQQPQLF 254

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62131149|gb|AAX68526.1| putative ethylene responsive element binding protein 3 [Gossypium hirsutum]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 144/267 (53%), Positives = 169/267 (63%), Gaps = 37/267 (13%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKA- 59
           MCGGA+I+D+     V+ + KLT +DLWSE    SDLLG D NGKS         N+K  
Sbjct: 1   MCGGAIISDF---VAVKHDPKLTGDDLWSEIDIFSDLLGFDNNGKSFVNHQFHNNNKKLI 57

Query: 60  -----------EDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRV 108
                       ++  K +R     +KTQR RKN YRGIRQRPWGKWAAEIRDP KGVRV
Sbjct: 58  NPKDNQLNKERSETIQKTSRVTKNVEKTQRTRKNFYRGIRQRPWGKWAAEIRDPQKGVRV 117

Query: 109 WLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPP-------PPIAP-PPAKKRCMPSPE 160
           WLGT NTAEEAARAYDEAAKRIRGDKAKLNF Q P       P +   PPAKKRC+  PE
Sbjct: 118 WLGTHNTAEEAARAYDEAAKRIRGDKAKLNFPQTPTKNQAASPALTQLPPAKKRCI-VPE 176

Query: 161 LTQPRFETIGTPPAPAPSPWVGFGY-QNEFYQP-RAVDDEFELSQQISRLESFLGLEP-- 216
           LTQP F+T  +PP P     +G G  ++E Y+P   V+ E EL +QI  LESFLGLE   
Sbjct: 177 LTQPSFQT-DSPPYP-----MGLGSGRSEDYKPIEVVESELELKEQIWSLESFLGLETNH 230

Query: 217 -LMSQPSGNVAGGCDSVDFWMLDDVAA 242
             M+Q SGN  GG DS++ W LDD+  
Sbjct: 231 ETMTQLSGN--GGTDSLELWTLDDLVT 255

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431800|ref|XP_002272426.1| PREDICTED: ethylene-responsive transcription factor RAP2-3 [Vitis vinifera] gi|296083324|emb|CBI22960.3| unnamed protein product [Vitis vinifera]

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 144/275 (52%), Positives = 167/275 (60%), Gaps = 42/275 (15%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDY-NGKS-----------HP 48
           MCGGA+I+ +      +R RKLT EDLWSE  +ISDLLGLD  NG              P
Sbjct: 1   MCGGAIISGF---IAAKRGRKLTKEDLWSELDTISDLLGLDSANGGDDFNPSENRVAPKP 57

Query: 49  KQPLKVKNEKAEDSSNKAARTEWKEKKTQ-RVRKNVYRGIRQRPWGKWAAEIRDPYKGVR 107
           KQ  K  NE    ++ KA R E K+  T  R+RKNVYRGIRQRPWGKWAAEIRDP+KGVR
Sbjct: 58  KQVSKGTNE----NTQKAIRVEEKKSTTTPRIRKNVYRGIRQRPWGKWAAEIRDPHKGVR 113

Query: 108 VWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPP-----PIAPPPAKKRC-MPSPEL 161
           VWLGT+NTAEEAARAYDEAAKRIRGDKAKLNFA P       PI  PP+K+RC +P P  
Sbjct: 114 VWLGTYNTAEEAARAYDEAAKRIRGDKAKLNFADPSSPHFPPPIPLPPSKRRCVVPDPTA 173

Query: 162 TQPRFETIGTPPA---PAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLM 218
                 T+  PP    PAP       Y+NE         E E  +QIS LES LGLEP  
Sbjct: 174 QSSYQPTVPPPPLMTYPAP-------YENE------AASELEFKEQISSLESLLGLEPEQ 220

Query: 219 SQPSGNVAGGCDSVDFWMLDDVAATQQLNSNQFLC 253
           +    N     DSVD WML+D+A+T   +  Q +C
Sbjct: 221 AATQLNEITESDSVDLWMLEDLASTHPHHHRQHVC 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147819174|emb|CAN69221.1| hypothetical protein VITISV_012017 [Vitis vinifera]

 Score =  220 bits (561), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 142/273 (52%), Positives = 168/273 (61%), Gaps = 38/273 (13%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDY-NG---------KSHPKQ 50
           MCGGA+I+ +      +R RKLT EDLWSE  +ISDLLGLD  NG         +  PK 
Sbjct: 1   MCGGAIISGF---IAAKRGRKLTKEDLWSELDTISDLLGLDSANGGDDFNPSENRVAPK- 56

Query: 51  PLKVKNEKAEDSSNKAARTEWKEKKTQ-RVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVW 109
           P +V    +E++  KA R E K+  T  R+RKNVYRGIRQRPWGKWAAEIRDP+KGVRVW
Sbjct: 57  PKQVSKGTSENT-QKAIRVEEKKSTTTPRIRKNVYRGIRQRPWGKWAAEIRDPHKGVRVW 115

Query: 110 LGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPP-----PIAPPPAKKRC-MPSPELTQ 163
           LGT+NTAEEAARAYDEAAKRIRGDKAKLNFA P       PI  PP+K+RC +P P    
Sbjct: 116 LGTYNTAEEAARAYDEAAKRIRGDKAKLNFADPSSPHFPPPIPLPPSKRRCVVPDPTAQS 175

Query: 164 PRFETIGTPPA---PAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLMSQ 220
               T+  PP    PAP       Y+NE         E E  +QIS LES LGLEP  + 
Sbjct: 176 SYQPTVPPPPLMTYPAP-------YENE------AASELEFKEQISSLESLLGLEPEQAA 222

Query: 221 PSGNVAGGCDSVDFWMLDDVAATQQLNSNQFLC 253
              N     DSVD WML+D+A+T   +    +C
Sbjct: 223 TQLNEITESDSVDLWMLEDLASTHPHHHRLHVC 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|59800345|gb|AAX07460.1| ethylene-responsive element binding protein ERF6 [Gossypium hirsutum]

 Score =  219 bits (558), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 148/268 (55%), Positives = 175/268 (65%), Gaps = 38/268 (14%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKS------HPKQPLKV 54
           MCGGA+I+D+  V P + +RKLT +DLWSE    SDLLG D NGKS      H     K+
Sbjct: 1   MCGGAIISDF--VAP-KYDRKLTGDDLWSELDIFSDLLGFDNNGKSFVNHQFHNNNNNKL 57

Query: 55  KNEKAE-------DSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVR 107
            N K         ++  K ++   K +KTQR RKN YRGIRQRPWGKWAAEIRDP KGVR
Sbjct: 58  INPKDNQLNKERSETIQKTSQVTKKVEKTQRTRKNFYRGIRQRPWGKWAAEIRDPQKGVR 117

Query: 108 VWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPP-------PPIAP-PPAKKRCMPSP 159
           VWLGT+NTAEEAARAY EAAKRIRGDKAKLNF Q P       P +   PPAKKRC+  P
Sbjct: 118 VWLGTYNTAEEAARAYYEAAKRIRGDKAKLNFPQTPTKNQAASPALTQLPPAKKRCI-VP 176

Query: 160 ELTQPRFETIGTPPAPAPSPWVGFGY-QNEFYQP-RAVDDEFELSQQISRLESFLGLEP- 216
           ELTQP F+T  +PP P     +G GY ++E Y+P   V+ E EL +QI  LESFLGLE  
Sbjct: 177 ELTQPSFQT-DSPPYP-----MGLGYGRSEDYKPIEVVESELELKEQIWSLESFLGLETN 230

Query: 217 --LMSQPSGNVAGGCDSVDFWMLDDVAA 242
              M+Q SGN  GG DS++ W LDD+  
Sbjct: 231 HETMTQLSGN--GGTDSLELWTLDDLVT 256

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110340|ref|XP_002315490.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222864530|gb|EEF01661.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 136/277 (49%), Positives = 156/277 (56%), Gaps = 76/277 (27%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDY-------NGK-------- 45
           MCGGA+I+D+  V+   R RK T+EDLWSE  S+SD LGLD+       NG         
Sbjct: 1   MCGGAIISDFVSVK---RGRKPTTEDLWSELDSLSDFLGLDHRSMNNINNGSKKENLSNL 57

Query: 46  ---SHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDP 102
                P+QP +V  E+ E  S +A   E  +KK QR RKNVYRGIRQRPWGKWAAEIRDP
Sbjct: 58  KLAQKPRQPNQVITERVEKPS-QATEQEAGKKKVQRTRKNVYRGIRQRPWGKWAAEIRDP 116

Query: 103 YKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNF---------AQPPPP----IAPP 149
           +KGVRVWLGT+NTA+EAA+AYDEAAKRIRGDKAKLNF         A PPPP     APP
Sbjct: 117 HKGVRVWLGTYNTADEAAKAYDEAAKRIRGDKAKLNFPPQPPPTSEAAPPPPPKSEAAPP 176

Query: 150 PAKKRCMPSPELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLE 209
           PAKKRC+  PE                                 A    FE   QI  LE
Sbjct: 177 PAKKRCILGPET--------------------------------AAMASFE---QILNLE 201

Query: 210 SFLGLEPLMSQPSGNVAGG------CDSVDFWMLDDV 240
           SF GLE   +    +  GG      CDSVD WMLDD+
Sbjct: 202 SFHGLETKQTAAQLSCDGGGSGDYNCDSVDPWMLDDL 238

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|292668907|gb|ADE41108.1| AP2 domain class transcription factor [Malus x domestica]

 Score =  204 bits (518), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 138/278 (49%), Positives = 166/278 (59%), Gaps = 53/278 (19%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKN-EKA 59
           MCGGA+I+D+      +R RKLT +DLWSE  +ISDLLG+D++  S  KQP   K  +K 
Sbjct: 1   MCGGAIISDF---IAAKRGRKLTEKDLWSELDTISDLLGIDHS-NSINKQPEDYKVVQKP 56

Query: 60  EDSSNKAA----------RTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVW 109
           + S  KA                  + +RVRKNVYRGIRQRPWGKWAAEIRDP KGVRVW
Sbjct: 57  KPSVTKATSDAKPKKATGAAAAAAAEGKRVRKNVYRGIRQRPWGKWAAEIRDPRKGVRVW 116

Query: 110 LGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQ--------PPPPIAPPPAKKRCMPSP-- 159
           LGT+NTAEEAARAYDEAA RIRGDKAKLNF+Q        P  P  PPP KKRC+ +   
Sbjct: 117 LGTYNTAEEAARAYDEAAVRIRGDKAKLNFSQPPPSSLLPPLAPATPPPTKKRCIVAEST 176

Query: 160 --ELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRA----------VDDEFELSQQISR 207
             E TQP F T             G  Y + FYQ              D  +EL +QIS 
Sbjct: 177 RVESTQPSFHT-------------GSYYYDTFYQGDGDMYAKNEVADGDGGYELKEQISS 223

Query: 208 LESFLGLEPLMS-QPSGNVAGG--CDSVDFWMLDDVAA 242
           LESFLGL+ +++ QPS  V+G    DS+D WMLD++  
Sbjct: 224 LESFLGLDEVVAEQPSQVVSGSGDSDSLDPWMLDNLVT 261

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130484|ref|XP_002328620.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222838602|gb|EEE76967.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  202 bits (515), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 134/267 (50%), Positives = 160/267 (59%), Gaps = 41/267 (15%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGK--------------- 45
           MCGGA+I+D+     V+R R+LT EDLWSE    S+ L  D++                 
Sbjct: 1   MCGGAIISDF---VTVKRGRRLTVEDLWSELDPFSEFLRFDHHSNDNNGSKKDPSNLLFP 57

Query: 46  ---SHPKQPLKVKNEKAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDP 102
              S+  Q  +V  EK E  S+ A   E   KK QR RK+VYRGIRQR WGKWAAEIRDP
Sbjct: 58  QKPSYTIQVQQVITEKVEKPSH-ATEKENGNKKAQRTRKSVYRGIRQRTWGKWAAEIRDP 116

Query: 103 YKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNF--AQPPPPIAPPPAKKRCMPSPE 160
           +KG RVWLGT+NTAEEAA+AYDEAAKRIRGDKAKLNF    PP P APPPAKKRC+ +PE
Sbjct: 117 HKGARVWLGTYNTAEEAAKAYDEAAKRIRGDKAKLNFPSQTPPTPEAPPPAKKRCIVAPE 176

Query: 161 LTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEP--LM 218
                  +  TPP   P      GYQNE         ++EL +QI +LESFLGLEP  + 
Sbjct: 177 TAY--VASPFTPPLQEPYS----GYQNE---------DYELEEQILKLESFLGLEPDQMA 221

Query: 219 SQPSGNVAGGCDSVDFWMLDDVAATQQ 245
           ++   N     DS D WMLDD+    Q
Sbjct: 222 ARLRENGGDNRDSGDLWMLDDLVTHHQ 248

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398557|gb|ADL36573.1| AP2D domain class transcription factor [Malus x domestica]

 Score =  201 bits (510), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 129/269 (47%), Positives = 159/269 (59%), Gaps = 47/269 (17%)

Query: 1   MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKN-EKA 59
           MCGGA+I+D+     V+R  KLT+EDLWS+  +ISDLLG+DY+  S  KQP   K  +K 
Sbjct: 1   MCGGAIISDF---IAVKRALKLTAEDLWSDLDTISDLLGIDYS-NSINKQPENHKVVQKP 56

Query: 60  EDSSNKAARTEWKEKKTQ---------RVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWL 110
           + S  K   ++ K K+           RVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWL
Sbjct: 57  KPSITKVVTSDEKPKQASGSAAAAKGKRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWL 116

Query: 111 GTFNTAEEAARAYDEAAKRIRGDKAKLNFAQ--------PPPPIAPPPAKKRCMPSP--- 159
           GT++TAEEAARAYDEAA RIRGDKAKLNFAQ           P  PPP K+RC+ +    
Sbjct: 117 GTYDTAEEAARAYDEAAVRIRGDKAKLNFAQPPSSSPLPSLAPDTPPPTKRRCIVAESTR 176

Query: 160 -ELTQPRFETIGTPPAPAPSPWVGFGYQNEFYQPRAVDDEFELSQQISRLESFLGLEPLM 218
            E TQP F+T             G  Y +  Y      + +      ++ E   G E ++
Sbjct: 177 VEPTQPSFQT-------------GSYYYDPLYHGGGGGEMY------AKKEVAGGDEVVV 217

Query: 219 SQPSGNVAGG--CDSVDFWMLDDVAATQQ 245
            Q S  V+G    DS+  WMLDD+ A QQ
Sbjct: 218 EQLSQVVSGSGESDSLYLWMLDDLVAYQQ 246

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2089368	248	EBP "ethylene-responsive eleme	0.936	0.955	0.406	4.8e-39
TAIR|locus:2197076	358	RAP2.12 "related to AP2 12" [A	0.264	0.187	0.626	5.4e-28
TAIR|locus:2090975	379	RAP2.2 "related to AP2 2" [Ara	0.276	0.184	0.628	4.8e-24
TAIR|locus:2061956	171	ERF71 "ethylene response facto	0.268	0.397	0.647	6.9e-23
TAIR|locus:2194007	262	ERF73 "ethylene response facto	0.505	0.488	0.422	2.6e-22
UNIPROTKB|Q5MFV3	399	BIERF1 "BTH-induced ERF transc	0.359	0.228	0.494	9.9e-22
UNIPROTKB|Q5MFV0	329	BIERF4 "BTH-induced ERF transc	0.537	0.413	0.361	1.9e-19
TAIR|locus:2170101	220	ERF110 "ethylene response fact	0.292	0.336	0.537	7.5e-18
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.292	0.385	0.540	6.7e-17
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.241	0.231	0.590	2.9e-16

TAIR|locus:2089368 EBP "ethylene-responsive element binding protein" [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 104/256 (40%), Positives = 133/256 (51%)

Query:     1 MCGGALIADYDEVRPVRRERKLTSEDLWSEF--GSISDLLGLDYNGKSHPKQPLKVKNEK 58
             MCGGA+I+DY  +    + RKLT+E+LWSE    +  D  G     K HP   + VK   
Sbjct:     1 MCGGAIISDYAPLVTKAKGRKLTAEELWSELDASAADDFWGFYSTSKLHPTNQVNVK--- 57

Query:    59 AEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXX 118
              E++  K   TE  ++   R RKNVYRGIR+RPWGKWAAEIRDP KGVRVWLGTFNT   
Sbjct:    58 -EEAVKKEQATEPGKR---RKRKNVYRGIRKRPWGKWAAEIRDPRKGVRVWLGTFNTAEE 113

Query:   119 XXXXXXXXXKRIRGDKAKLNFXXXXXXXXXXXXKKRCMPSPELTQPRFETI-------GT 171
                      K+IRGDKAKLNF                 P     QP  + +         
Sbjct:   114 AAMAYDVAAKQIRGDKAKLNFPDLHHPPPPNYTPPPSSPR-STDQPPAKKVCVVSQSESE 172

Query:   172 PPAPA-PSPWVGFGYQNEFYQ-PRAVDDEFELSQQISRLESFLGLEPLMSQPSGNVAGGC 229
                P+ P   +GFG  +EF       + +++L QQIS LESFL L+   ++    +    
Sbjct:   173 LSQPSFPVECIGFGNGDEFQNLSYGFEPDYDLKQQISSLESFLELDGNTAEQPSQLDESV 232

Query:   230 DSVDFWMLDDVAATQQ 245
               VD WMLDDV A+ +
Sbjct:   233 SEVDMWMLDDVIASYE 248

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;IMP;TAS

GO:0005634 "nucleus" evidence=ISM;IDA;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0051707 "response to other organism" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0008219 "cell death" evidence=IMP

GO:0010286 "heat acclimation" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2197076 RAP2.12 "related to AP2 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 5.4e-28, Sum P(3) = 5.4e-28
 Identities = 42/67 (62%), Positives = 46/67 (68%)

Query:    73 EKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRG 132
             EK   R RKN YRGIRQRPWGKWAAEIRDP +G R+WLGTF T            +RIRG
Sbjct:   114 EKSANRKRKNQYRGIRQRPWGKWAAEIRDPREGARIWLGTFKTAEEAARAYDAAARRIRG 173

Query:   133 DKAKLNF 139
              KAK+NF
Sbjct:   174 SKAKVNF 180

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0070483 "detection of hypoxia" evidence=IEP

TAIR|locus:2090975 RAP2.2 "related to AP2 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 4.8e-24, Sum P(2) = 4.8e-24
 Identities = 44/70 (62%), Positives = 49/70 (70%)

Query:    70 EWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKR 129
             E  EK ++R RKN YRGIRQRPWGKWAAEIRDP KG R WLGTF+T            +R
Sbjct:   114 EQAEKSSKRKRKNQYRGIRQRPWGKWAAEIRDPRKGSREWLGTFDTAEEAARAYDAAARR 173

Query:   130 IRGDKAKLNF 139
             IRG KAK+NF
Sbjct:   174 IRGTKAKVNF 183

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0001666 "response to hypoxia" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IEP

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0046685 "response to arsenic-containing substance" evidence=RCA

TAIR|locus:2061956 ERF71 "ethylene response factor 71" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 6.9e-23, Sum P(2) = 6.9e-23
 Identities = 44/68 (64%), Positives = 49/68 (72%)

Query:    72 KEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIR 131
             +E+  +R RKN+YRGIRQRPWGKWAAEIRDP KGVRVWLGTF T             +IR
Sbjct:    38 EERDGKRERKNLYRGIRQRPWGKWAAEIRDPSKGVRVWLGTFKTADEAARAYDVAAIKIR 97

Query:   132 GDKAKLNF 139
             G KAKLNF
Sbjct:    98 GRKAKLNF 105

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0034059 "response to anoxia" evidence=IGI

TAIR|locus:2194007 ERF73 "ethylene response factor 73" [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
 Identities = 60/142 (42%), Positives = 81/142 (57%)

Query:     1 MCGGALIADYDEVRPVRRERKLTSEDLWSEFGSISDLLGLDYNG---KSHPKQPLKVKNE 57
             MCGGA+I+DY  + P +  R  + +  W   G + D    D++G   +    +P    + 
Sbjct:     1 MCGGAVISDY--IAPEKIARS-SGKSSWRSNG-VFDCSIYDFDGNFDELESDEPFVFSST 56

Query:    58 KAEDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXX 117
                 +S  A+  + K+K++ R     Y+GIR+RPWG+WAAEIRDP KGVRVWLGTFNT  
Sbjct:    57 HKHHASGSAS--DGKKKQSSR-----YKGIRRRPWGRWAAEIRDPIKGVRVWLGTFNTAE 109

Query:   118 XXXXXXXXXXKRIRGDKAKLNF 139
                       KRIRG KAKLNF
Sbjct:   110 EAARAYDLEAKRIRGAKAKLNF 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS;IDA

GO:0034059 "response to anoxia" evidence=IGI

GO:0009873 "ethylene mediated signaling pathway" evidence=IMP;TAS

GO:0071369 "cellular response to ethylene stimulus" evidence=IMP

GO:0071456 "cellular response to hypoxia" evidence=IEP

UNIPROTKB|Q5MFV3 BIERF1 "BTH-induced ERF transcriptional factor 1" [Oryza sativa Indica Group (taxid:39946)]

 Score = 236 (88.1 bits), Expect = 9.9e-22, Sum P(2) = 9.9e-22
 Identities = 45/91 (49%), Positives = 53/91 (58%)

Query:    74 KKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGD 133
             +  +R RKN YRGIRQRPWGKWAAEIRDP KGVRVWLGT+NT            ++IRG 
Sbjct:   129 RSAKRKRKNQYRGIRQRPWGKWAAEIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGK 188

Query:   134 KAKLNFXXXXXXXXXXXXKKRCMPSPELTQP 164
             KAK+NF            K+      +L  P
Sbjct:   189 KAKVNFPDEPAVAQKLSLKQNAAKQEKLAPP 219

GO:0009620 "response to fungus" evidence=IEP

UNIPROTKB|Q5MFV0 BIERF4 "BTH-induced ERF transcriptional factor 4" [Oryza sativa Indica Group (taxid:39946)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 56/155 (36%), Positives = 86/155 (55%)

Query:     1 MCGGALIADYDEVRPVRRERKLTSEDLW-------SEFGSISDLLGL---DYNGKSHPKQ 50
             MCGGA++A+     P  R  ++T+  +W        + G+ +D       D++  S  ++
Sbjct:     1 MCGGAILAELIPSAPAAR--RVTAGHVWPGDANKAKKKGARADDFEAAFRDFDNDSDDEE 58

Query:    51 PLKVKNEKAEDSSNKAARTEWKEKK-----TQRVRKNV-YRGIRQRPWGKWAAEIRDPYK 104
              + V+  + E+++++     ++ KK     + R RK   YRG+R+RPWGKWAAEIRDP K
Sbjct:    59 -MMVEEAEEEEATSEHKPFVFRAKKAAAAASSRRRKPAQYRGVRRRPWGKWAAEIRDPVK 117

Query:   105 GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 139
             G+RVWLGTF              + IRGD+AKLNF
Sbjct:   118 GIRVWLGTFTNAEAAALAYDDAARAIRGDRAKLNF 152

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IC

TAIR|locus:2170101 ERF110 "ethylene response factor 110" [Arabidopsis thaliana (taxid:3702)]

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 43/80 (53%), Positives = 52/80 (65%)

Query:    60 EDSSNKAARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXX 119
             E+S +KA   E +EKK +      YRG+RQRPWGKWAAEIRDP++  RVWLGTF+T    
Sbjct:    59 EESMSKAFPEEAREKKRR------YRGVRQRPWGKWAAEIRDPHRAARVWLGTFDTAEAA 112

Query:   120 XXXXXXXXKRIRGDKAKLNF 139
                      R RG+KAKLNF
Sbjct:   113 ARAYDEAALRFRGNKAKLNF 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 40/74 (54%), Positives = 44/74 (59%)

Query:    66 AARTEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXX 125
             +A T+  E      R   YRG+RQRPWGKWAAEIRDP+K  RVWLGTF T          
Sbjct:    43 SAVTKECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHKATRVWLGTFETAEAAARAYDA 102

Query:   126 XXKRIRGDKAKLNF 139
                R RG KAKLNF
Sbjct:   103 AALRFRGSKAKLNF 116

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 36/61 (59%), Positives = 40/61 (65%)

Query:    79 VRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLN 138
             +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLN
Sbjct:    87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLN 146

Query:   139 F 139
             F
Sbjct:   147 F 147

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P42736	RAP23_ARATH	No assigned EC number	0.4600	0.8932	0.9112	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00033049001 SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (259 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	3e-33
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-31
pfam00847	53	pfam00847, AP2, AP2 domain	2e-14

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  115 bits (289), Expect = 3e-33
 Identities = 44/62 (70%), Positives = 48/62 (77%)

Query: 84  YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPP 143
           YRG+RQRPWGKW AEIRDP KG RVWLGTF+TAEEAARAYD AA + RG  A+LNF    
Sbjct: 2   YRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSL 61

Query: 144 PP 145
             
Sbjct: 62  YD 63

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  109 bits (275), Expect = 2e-31
 Identities = 42/57 (73%), Positives = 47/57 (82%)

Query: 84  YRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFA 140
           YRG+RQRPWGKW AEIRDP  G R+WLGTF+TAEEAARAYD AA ++RG  A LNF 
Sbjct: 3   YRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 65.4 bits (160), Expect = 2e-14
 Identities = 28/53 (52%), Positives = 33/53 (62%), Gaps = 4/53 (7%)

Query: 83  VYRGIRQRP-WGKWAAEIRDPY--KGVRVWLGTFNTAEEAARAYDEAAKRIRG 132
            Y+G+R    WG+W AEIRDP   K  R  LGTF T EEAARA   A  ++RG
Sbjct: 2   GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.83
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.8
PHA00280	121	putative NHN endonuclease	99.6
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.1
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	80.03

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.83  E-value=1e-20  Score=136.28  Aligned_cols=61  Identities=69%  Similarity=1.236  Sum_probs=57.2

Q ss_pred             CceeeEEECCCCeEEEEEecCCCCeeeeccCcCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 025382           82 NVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQP  142 (253)
Q Consensus        82 SgYrGVr~r~~GKW~A~I~~~~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~lNFp~~  142 (253)
                      |+|+||+++++|||+|+|+++..|+++|||+|+|+||||+|||.++++++|.++.+|||.+
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPSGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCCCCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888899999999954499999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.80  E-value=2.2e-19  Score=131.00  Aligned_cols=62  Identities=71%  Similarity=1.210  Sum_probs=58.6

Q ss_pred             ceeeEEECCCCeEEEEEecCCCCeeeeccCcCCHHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Q 025382           83 VYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPPP  144 (253)
Q Consensus        83 gYrGVr~r~~GKW~A~I~~~~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~lNFp~~~~  144 (253)
                      +|+||+++++|||+|+|+++.+|+.+|||+|+|+||||+|||.++++++|.++.+|||.+..
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y   62 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPSKGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLY   62 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecCCCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccC
Confidence            48999988899999999999899999999999999999999999999999999999998654

>PHA00280 putative NHN endonuclease

Probab=99.60  E-value=1.5e-15  Score=124.88  Aligned_cols=73  Identities=16%  Similarity=0.271  Sum_probs=63.2

Q ss_pred             hhhhHH-HHHHHhhhhccccCCCceeeEE-ECCCCeEEEEEecCCCCeeeeccCcCCHHHHHHHHHHHHHHhcCCCCC
Q 025382           61 DSSNKA-ARTEWKEKKTQRVRKNVYRGIR-QRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAK  136 (253)
Q Consensus        61 ~~~~~~-~~~~~~~~~~r~~~~SgYrGVr-~r~~GKW~A~I~~~~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~  136 (253)
                      ++-+.. ..+|..|++++++|+|||+||+ .+..|||+|+|++  +||+++||.|+|+|+|+.||+ +++++||+||.
T Consensus        45 ~NLr~~T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~--~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         45 DNLRLALPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA--EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHhhhcCHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE--CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            344443 5677788888899999999997 4568999999999  999999999999999999997 78899999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.10  E-value=1.7e-10  Score=81.11  Aligned_cols=52  Identities=37%  Similarity=0.533  Sum_probs=45.0

Q ss_pred             CceeeEEEC-CCCeEEEEEecCC-C--CeeeeccCcCCHHHHHHHHHHHHHHhcCC
Q 025382           82 NVYRGIRQR-PWGKWAAEIRDPY-K--GVRVWLGTFNTAEEAARAYDEAAKRIRGD  133 (253)
Q Consensus        82 SgYrGVr~r-~~GKW~A~I~~~~-~--gkri~LGtF~T~EEAArAYD~AA~~l~G~  133 (253)
                      |+|+||++. ..++|+|+|++.. +  +++++||.|++++||++||+.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            789999754 4799999999942 2  49999999999999999999999999874

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=80.03  E-value=6.7  Score=26.60  Aligned_cols=38  Identities=21%  Similarity=0.313  Sum_probs=29.4

Q ss_pred             eEEEEEe--cCCCC--eeeeccCcCCHHHHHHHHHHHHHHhc
Q 025382           94 KWAAEIR--DPYKG--VRVWLGTFNTAEEAARAYDEAAKRIR  131 (253)
Q Consensus        94 KW~A~I~--~~~~g--kri~LGtF~T~EEAArAYD~AA~~l~  131 (253)
                      +|..+|.  ++..|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883  43344  66888999999999999988776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		4e-12
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		5e-12

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 84  YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 139
           YRG+RQRPWGK+AAEIRDP K G RVWLGTF T             R+RG +A LNF
Sbjct: 6   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 62

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 68.2 bits (165), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 84  YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 139
           YRG+RQRPWGK+AAEIRDP K G RVWLGTF T             R+RG +A LNF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1gcc_A	63	Ethylene responsive element binding factor 1; tran	9e-35

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  118 bits (297), Expect = 9e-35
 Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)

Query: 84  YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNF 139
           YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD AA R+RG +A LNF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.9
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	94.17
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	91.41
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	84.06

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.90  E-value=2.7e-24  Score=156.89  Aligned_cols=61  Identities=69%  Similarity=1.140  Sum_probs=57.5

Q ss_pred             ceeeEEECCCCeEEEEEecCC-CCeeeeccCcCCHHHHHHHHHHHHHHhcCCCCCCCCCCCC
Q 025382           83 VYRGIRQRPWGKWAAEIRDPY-KGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQPP  143 (253)
Q Consensus        83 gYrGVr~r~~GKW~A~I~~~~-~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~lNFp~~~  143 (253)
                      +||||+++++|||+|+|+++. +|+++|||+|+|+||||+|||.|+++++|.+|.+|||.++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            699999888999999999986 4899999999999999999999999999999999999863

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=94.17  E-value=0.0019  Score=53.86  Aligned_cols=62  Identities=6%  Similarity=-0.057  Sum_probs=40.2

Q ss_pred             hhhhhhHHHH-HHHhhhhccccCCCceeeEEECCCCeEEEEEecCCCCeeeeccCcCCHHHHHHHHH
Q 025382           59 AEDSSNKAAR-TEWKEKKTQRVRKNVYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYD  124 (253)
Q Consensus        59 ~~~~~~~~~~-~~~~~~~~r~~~~SgYrGVr~r~~GKW~A~I~~~~~gkri~LGtF~T~EEAArAYD  124 (253)
                      .+++-++.+. +|..++.....+ +.++||...+.++|.+.|..  + +.++||.|.|.+|||++|.
T Consensus        84 ~~~NL~~~t~~eN~~~~~~~~~~-~~~~g~~~~~~~k~~~vi~~--~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M           84 LSTNLRWVTQKINVENQMSRGTL-NVSKAQQIAKIKNQKPIIVI--S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             CGGGEEEECHHHHHHHHHHHTCC-CCHHHHHHHHHHTCCCEEEE--C-TTSCEEEESCHHHHHHHHT
T ss_pred             CHHHcEECCHHHHhhcccccCcc-cceeeeeeccCCCCceEEEE--c-CCceEEeeCCHHHHHHHHC
Confidence            3445555543 444444333322 22567743334679999998  6 6788999999999999964

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=91.41  E-value=0.19  Score=37.83  Aligned_cols=28  Identities=21%  Similarity=0.311  Sum_probs=22.5

Q ss_pred             cCCCceeeEE-ECCCCeEEEEEecCCCCeee
Q 025382           79 VRKNVYRGIR-QRPWGKWAAEIRDPYKGVRV  108 (253)
Q Consensus        79 ~~~SgYrGVr-~r~~GKW~A~I~~~~~gkri  108 (253)
                      ..+|+|+||+ ..+.+.|.|.-..  +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e--~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD--GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE--TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec--CCeEe
Confidence            4689999996 5557999999998  77764

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=84.06  E-value=1.3  Score=38.34  Aligned_cols=42  Identities=17%  Similarity=0.085  Sum_probs=32.6

Q ss_pred             eeEEECCCCeEEEEEecCCCCeeeeccCcCCHHHHHHHHHHHHHHh
Q 025382           85 RGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTAEEAARAYDEAAKRI  130 (253)
Q Consensus        85 rGVr~r~~GKW~A~I~~~~~gkri~LGtF~T~EEAArAYD~AA~~l  130 (253)
                      .||++++.|.|+.+...  +||++.+|.  |..||..+...+...+
T Consensus        14 ~~v~~~~~g~~~~r~~~--~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           14 PNLYIRNNGYYCYRDPR--TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TTEEEETTTEEEEECTT--TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             ccceecCCCeEEEEeec--CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            46877788999988766  889999996  8888887766655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-29

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (254), Expect = 8e-29
 Identities = 43/57 (75%), Positives = 48/57 (84%), Gaps = 1/57 (1%)

Query: 84  YRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNF 139
           YRG+RQRPWGK+AAEIRDP K G RVWLGTF TAE+AA AYD AA R+RG +A LNF
Sbjct: 3   YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNF 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.9

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=2.2e-24  Score=156.17  Aligned_cols=60  Identities=70%  Similarity=1.170  Sum_probs=56.2

Q ss_pred             ceeeEEECCCCeEEEEEecC-CCCeeeeccCcCCHHHHHHHHHHHHHHhcCCCCCCCCCCC
Q 025382           83 VYRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTAEEAARAYDEAAKRIRGDKAKLNFAQP  142 (253)
Q Consensus        83 gYrGVr~r~~GKW~A~I~~~-~~gkri~LGtF~T~EEAArAYD~AA~~l~G~~A~lNFp~~  142 (253)
                      +||||+++++|||+|+|+++ .+++++|||+|+|+||||+|||.||++++|.+|.+|||..
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~   62 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLR   62 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTT
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCcc
Confidence            59999988899999999986 4678999999999999999999999999999999999975