Citrus Sinensis ID: 025390

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
MQPFLSPLRLQCFRFLTPLPSLNHSLLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLADRSNHLSNTTTGMSPSSPPSPSTDVVPAPAPAGEYSPPEGTVEVNPTPAPEPNKKPNAASSTFVNVASTIGAFAASSLLLAF
cccccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccccccccccHHHHHccccEEEccEEEEEEccccccEEEEcHHHHccccccccccccccccEEEEEcccccEEEEEccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
ccccccccccHHHHHHcccccccccEEEcHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcccEEEEEccccccEEccccccccHHHHHccccEEEccEEEEEEccccccEEEEcHHHHHHcccccccEEEcccccEEEEcccccEEEEEccccccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcc
mqpflsplrlqcfrfltplpslnhslLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFliggkgnwgtptdnttlnYNQWAEKNRFQIGDSIVFKyasgqdsvlQVNKDAytncsteypvarytdghtvftfkqsgpyyfisgnkdncvnneKLAVIVLADrsnhlsntttgmspssppspstdvvpapapageysppegtvevnptpapepnkkpnaasstFVNVASTIGAFAASSLLLAF
MQPFLSPLRLQCFRFLTPLPSLNHSLLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIggkgnwgtptdnTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLADRSNHLSNTttgmspssppspsTDVVPAPAPAGEYSPPEGTVEVNPTPAPEPNKKPNAASSTFVNVASTIGAFAASSLLLAF
MQPFLSPLRLQCFRFltplpslnhslllslpMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLADRSNHLSNTTTGMspssppspstdvvpapapaGEYSPPEGTVEVnptpapepnkkpnaaSSTFVNVASTIGafaasslllaf
*****SPLRLQCFRFLTPLPSLNHSLLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLAD*************************************************************FVNVASTIGAFAAS******
***FLSPLRLQCFRFLTPLPSLNHSLLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVI*********************************************************************ASTIGAFAASSLLLAF
MQPFLSPLRLQCFRFLTPLPSLNHSLLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLADRSNHLS********************APAPAGEYSPPEGTVEVNPTPAPEPNKKPNAASSTFVNVASTIGAFAASSLLLAF
*QPFLSPLRLQCFRFLTPLPSLNHSLLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLAD************************************************************TFVNVASTIGAFAASSLLLAF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRRooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiii
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MQPFLSPLRLQCFRFLTPLPSLNHSLLLSLPMAQKMLMRLDLGSRCGAIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLADRSNHLSNTTTGMSPSSPPSPSTDVVPAPAPAGEYSPPEGTVEVNPTPAPEPNKKPNAASSTFVNVASTIGAFAASSLLLAF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query253 2.2.26 [Sep-21-2011]
Q9T076 349 Early nodulin-like protei no no 0.462 0.335 0.458 3e-27
Q9SK27182 Early nodulin-like protei no no 0.600 0.835 0.397 5e-27
Q8LC95186 Early nodulin-like protei no no 0.466 0.634 0.458 3e-26
Q5JNJ5237 Early nodulin-like protei no no 0.470 0.502 0.420 2e-21
P93328180 Early nodulin-16 OS=Medic N/A no 0.474 0.666 0.352 8e-15
P93329268 Early nodulin-20 OS=Medic N/A no 0.482 0.455 0.322 2e-13
Q02917187 Early nodulin-55-2 OS=Gly no no 0.466 0.631 0.341 3e-13
Q07488196 Blue copper protein OS=Ar no no 0.494 0.637 0.283 4e-11
P80728108 Mavicyanin OS=Cucurbita p N/A no 0.363 0.851 0.347 2e-10
P42849115 Umecyanin OS=Armoracia ru N/A no 0.403 0.886 0.317 4e-10
>sp|Q9T076|ENL2_ARATH Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1 Back     alignment and function desciption
 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 75/120 (62%), Gaps = 3/120 (2%)

Query: 54  ILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDS 113
           +L L  L   S AR+F +GG G W T   N   NY  W+ KNRF + D++ F YA G DS
Sbjct: 16  LLSLSTLFTISNARKFNVGGSGAWVT---NPPENYESWSGKNRFLVHDTLYFSYAKGADS 72

Query: 114 VLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLADR 173
           VL+VNK  Y  C+T+ P+ R  DG +  +  + GP+YFISGN+DNC   +KL V+V++ R
Sbjct: 73  VLEVNKADYDACNTKNPIKRVDDGDSEISLDRYGPFYFISGNEDNCKKGQKLNVVVISAR 132

Arabidopsis thaliana (taxid: 3702)
>sp|Q9SK27|ENL1_ARATH Early nodulin-like protein 1 OS=Arabidopsis thaliana GN=At2g25060 PE=1 SV=2 Back     alignment and function description
>sp|Q8LC95|ENL3_ARATH Early nodulin-like protein 3 OS=Arabidopsis thaliana GN=At5g25090 PE=1 SV=2 Back     alignment and function description
>sp|Q5JNJ5|ENL1_ORYSJ Early nodulin-like protein 1 OS=Oryza sativa subsp. japonica GN=ENODL1 PE=1 SV=1 Back     alignment and function description
>sp|P93328|NO16_MEDTR Early nodulin-16 OS=Medicago truncatula GN=ENOD16 PE=3 SV=1 Back     alignment and function description
>sp|P93329|NO20_MEDTR Early nodulin-20 OS=Medicago truncatula GN=ENOD20 PE=3 SV=1 Back     alignment and function description
>sp|Q02917|NO552_SOYBN Early nodulin-55-2 OS=Glycine max GN=ENOD55-2 PE=2 SV=1 Back     alignment and function description
>sp|Q07488|BCB1_ARATH Blue copper protein OS=Arabidopsis thaliana GN=BCB PE=1 SV=2 Back     alignment and function description
>sp|P80728|MAVI_CUCPE Mavicyanin OS=Cucurbita pepo PE=1 SV=1 Back     alignment and function description
>sp|P42849|UMEC_ARMRU Umecyanin OS=Armoracia rusticana PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
255563723219 Early nodulin 55-2 precursor, putative [ 0.810 0.936 0.543 2e-58
224124262221 predicted protein [Populus trichocarpa] 0.758 0.868 0.515 2e-46
224115252193 predicted protein [Populus trichocarpa] 0.719 0.943 0.528 2e-46
356542203230 PREDICTED: early nodulin-like protein 1- 0.806 0.886 0.454 3e-46
225461070223 PREDICTED: early nodulin-like protein 1 0.743 0.843 0.522 1e-44
449489980261 PREDICTED: early nodulin-like protein 1- 0.656 0.636 0.461 2e-44
388513189247 unknown [Lotus japonicus] 0.841 0.862 0.433 1e-43
388517867247 unknown [Lotus japonicus] 0.841 0.862 0.429 2e-43
449468486232 PREDICTED: early nodulin-like protein 2- 0.762 0.831 0.441 2e-43
449470427212 PREDICTED: early nodulin-like protein 3- 0.711 0.849 0.457 5e-42
>gi|255563723|ref|XP_002522863.1| Early nodulin 55-2 precursor, putative [Ricinus communis] gi|223537947|gb|EEF39561.1| Early nodulin 55-2 precursor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/206 (54%), Positives = 144/206 (69%), Gaps = 1/206 (0%)

Query: 48  AIRALGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKY 107
           A   LG+ C++L++QK +A +F +GG   W  P + T   YNQWAEK RFQIGDS++F Y
Sbjct: 15  AFAVLGLFCVMLMLQKGDAIQFTVGGAKGWTVPKNTTAYEYNQWAEKTRFQIGDSLLFVY 74

Query: 108 ASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAV 167
              QDSVL VNK  Y +C+T   +A Y DGHTV+TF +SG +YFISGNKDNC+ NEKL V
Sbjct: 75  KPDQDSVLLVNKQDYDSCTTTAALATYDDGHTVYTFNRSGHFYFISGNKDNCLKNEKLIV 134

Query: 168 IVLADRSNHLSNTTTGMSPSSPPSPSTDVVPAPAPAGEYSPPEGTVEVNPTPAPEPNKKP 227
           +VLADRSN  S T    + S PPS    +VP+PAPAGE +PP GTVE NP+P+P  +  P
Sbjct: 135 VVLADRSNRSSYTNETTTASPPPSGEMGIVPSPAPAGEEAPPAGTVENNPSPSPVSD-TP 193

Query: 228 NAASSTFVNVASTIGAFAASSLLLAF 253
           NAAS  +++ ++ IGAF AS L+L F
Sbjct: 194 NAASVIYMSFSAAIGAFFASYLILIF 219

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224124262|ref|XP_002319287.1| predicted protein [Populus trichocarpa] gi|118485290|gb|ABK94504.1| unknown [Populus trichocarpa] gi|222857663|gb|EEE95210.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224115252|ref|XP_002316983.1| predicted protein [Populus trichocarpa] gi|222860048|gb|EEE97595.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356542203|ref|XP_003539559.1| PREDICTED: early nodulin-like protein 1-like [Glycine max] Back     alignment and taxonomy information
>gi|225461070|ref|XP_002279020.1| PREDICTED: early nodulin-like protein 1 [Vitis vinifera] gi|297735968|emb|CBI23942.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449489980|ref|XP_004158475.1| PREDICTED: early nodulin-like protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388513189|gb|AFK44656.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|388517867|gb|AFK46995.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449468486|ref|XP_004151952.1| PREDICTED: early nodulin-like protein 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449470427|ref|XP_004152918.1| PREDICTED: early nodulin-like protein 3-like [Cucumis sativus] gi|449524420|ref|XP_004169221.1| PREDICTED: early nodulin-like protein 3-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
TAIR|locus:2085775203 ENODL9 "early nodulin-like pro 0.501 0.625 0.546 3.5e-36
TAIR|locus:2179240186 ENODL13 "early nodulin-like pr 0.505 0.688 0.446 2.8e-27
TAIR|locus:2040164182 ENODL14 "early nodulin-like pr 0.498 0.692 0.429 5.7e-27
TAIR|locus:2116767177 ENODL15 "early nodulin-like pr 0.486 0.694 0.436 2.5e-26
TAIR|locus:2174428182 ENODL10 "early nodulin-like pr 0.466 0.648 0.479 3.6e-25
TAIR|locus:2137672 349 ENODL2 "early nodulin-like pro 0.462 0.335 0.458 9.7e-25
TAIR|locus:2118691190 ENODL12 "early nodulin-like pr 0.434 0.578 0.482 9.7e-25
TAIR|locus:2154679 370 ENODL1 "early nodulin-like pro 0.426 0.291 0.477 1.6e-24
TAIR|locus:505006529199 ENODL3 "early nodulin-like pro 0.415 0.527 0.444 1.8e-23
TAIR|locus:2127861221 ENODL4 "early nodulin-like pro 0.450 0.515 0.371 1.6e-22
TAIR|locus:2085775 ENODL9 "early nodulin-like protein 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
 Identities = 71/130 (54%), Positives = 95/130 (73%)

Query:    53 GILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQD 112
             G+LC ++++ ++ AREF +GG   W  P+ +    Y+QWAE++RFQIGDS++F Y S QD
Sbjct:    14 GLLCFLMIVDRAYAREFTVGGATGWTVPSGSQV--YSQWAEQSRFQIGDSLLFVYQSNQD 71

Query:   113 SVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLAD 172
             SVLQV +DAY +C+T+ P A++ DG T  T   SGPYYFISGNKDNC  NEKL VIV+AD
Sbjct:    72 SVLQVTRDAYDSCNTDSPTAKFADGKTSVTLNHSGPYYFISGNKDNCKKNEKLVVIVMAD 131

Query:   173 RSNHLSNTTT 182
             RS +  NT +
Sbjct:   132 RSGN-KNTAS 140
GO:0005507 "copper ion binding" evidence=IEA;ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0009055 "electron carrier activity" evidence=IEA
GO:0031225 "anchored to membrane" evidence=TAS
TAIR|locus:2179240 ENODL13 "early nodulin-like protein 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2040164 ENODL14 "early nodulin-like protein 14" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2116767 ENODL15 "early nodulin-like protein 15" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174428 ENODL10 "early nodulin-like protein 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2137672 ENODL2 "early nodulin-like protein 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118691 ENODL12 "early nodulin-like protein 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154679 ENODL1 "early nodulin-like protein 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006529 ENODL3 "early nodulin-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127861 ENODL4 "early nodulin-like protein 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XI.450.1
hypothetical protein (193 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
pfam0229884 pfam02298, Cu_bind_like, Plastocyanin-like domain 1e-29
PLN03148167 PLN03148, PLN03148, Blue copper-like protein; Prov 5e-15
TIGR00601 378 TIGR00601, rad23, UV excision repair protein Rad23 0.003
>gnl|CDD|216965 pfam02298, Cu_bind_like, Plastocyanin-like domain Back     alignment and domain information 
 Score =  106 bits (266), Expect = 1e-29
 Identities = 27/81 (33%), Positives = 43/81 (53%)

Query: 81  TDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTV 140
           T     +Y  WA    F++GD++VF Y  G  +V++V K  Y +C+T  P+  YT G+ +
Sbjct: 2   TVPLNADYTLWASGKTFRVGDTLVFNYDKGFHNVVEVTKADYESCNTSKPIRTYTTGNDI 61

Query: 141 FTFKQSGPYYFISGNKDNCVN 161
               + G +YFI G   +C  
Sbjct: 62  IPLTKPGQHYFICGVPGHCKG 82

This family represents a domain found in flowering plants related to the copper binding protein plastocyanin. Some members of this family may not bind copper due to the lack of key residues. Length = 84
>gnl|CDD|178693 PLN03148, PLN03148, Blue copper-like protein; Provisional Back     alignment and domain information
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 253
PLN03148167 Blue copper-like protein; Provisional 100.0
PF0229885 Cu_bind_like: Plastocyanin-like domain; InterPro: 99.97
PRK02710119 plastocyanin; Provisional 98.46
PF0012799 Copper-bind: Copper binding proteins, plastocyanin 98.34
TIGR0265699 cyanin_plasto plastocyanin. Members of this family 98.23
TIGR03102115 halo_cynanin halocyanin domain. Halocyanins are bl 98.08
COG3794128 PetE Plastocyanin [Energy production and conversio 97.98
TIGR02375116 pseudoazurin pseudoazurin. Pseudoazurin, also call 97.85
TIGR0265783 amicyanin amicyanin. Members of this family are am 96.87
TIGR03095148 rusti_cyanin rusticyanin. Rusticyanin is a blue co 96.72
PF06525196 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Memb 95.93
KOG3858233 consensus Ephrin, ligand for Eph receptor tyrosine 95.65
PF00812145 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a 95.62
PF13473104 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 94.68
TIGR03096135 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as de 94.17
TIGR03094195 sulfo_cyanin sulfocyanin. Members of this family a 93.49
COG4454158 Uncharacterized copper-binding protein [Inorganic 89.85
TIGR02695125 azurin azurin. Azurin is a blue copper-binding pro 88.19
TIGR02376311 Cu_nitrite_red nitrite reductase, copper-containin 82.97
PLN02604 566 oxidoreductase 82.02
PRK02888635 nitrous-oxide reductase; Validated 81.27
>PLN03148 Blue copper-like protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-41  Score=290.59  Aligned_cols=113  Identities=30%  Similarity=0.665  Sum_probs=102.7

Q ss_pred             HHHHHHHHhhhccceeEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCc
Q 025390           52 LGILCLVLLMQKSEAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPV  131 (253)
Q Consensus        52 l~l~~~lll~~~a~A~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi  131 (253)
                      +.+++++++...+.|++|+|||+.||+..     .+|++|+++++|+|||+|+|+|++++|+|+||++++|++|+..+++
T Consensus         6 l~~~~~~~~~~~~~a~~~~VGd~~GW~~~-----~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi   80 (167)
T PLN03148          6 LFCFFALFSASATTATDHIVGANKGWNPG-----INYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAA   80 (167)
T ss_pred             HHHHHHHHhhhhccceEEEeCCCCCcCCC-----CChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCc
Confidence            33344445566788999999999999853     3799999999999999999999999999999999999999999999


Q ss_pred             ccccCCceEEEEeccccEEEEeCCCCCCCCCCeEEEEEe
Q 025390          132 ARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVL  170 (253)
Q Consensus       132 ~~~s~G~t~v~L~~~G~~YFICgv~gHC~~GmKlaI~V~  170 (253)
                      ..|++|+++|+|+++|+|||||| .+||++||||+|+|.
T Consensus        81 ~~~tsG~d~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~  118 (167)
T PLN03148         81 GNWTSGKDFIPLNKAKRYYFICG-NGQCFNGMKVTILVH  118 (167)
T ss_pred             ceecCCCcEEEecCCccEEEEcC-CCccccCCEEEEEEc
Confidence            99999999999999999999999 589999999999994

>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>PRK02710 plastocyanin; Provisional Back     alignment and domain information
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ] Back     alignment and domain information
>TIGR02656 cyanin_plasto plastocyanin Back     alignment and domain information
>TIGR03102 halo_cynanin halocyanin domain Back     alignment and domain information
>COG3794 PetE Plastocyanin [Energy production and conversion] Back     alignment and domain information
>TIGR02375 pseudoazurin pseudoazurin Back     alignment and domain information
>TIGR02657 amicyanin amicyanin Back     alignment and domain information
>TIGR03095 rusti_cyanin rusticyanin Back     alignment and domain information
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus Back     alignment and domain information
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO) Back     alignment and domain information
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D Back     alignment and domain information
>TIGR03096 nitroso_cyanin nitrosocyanin Back     alignment and domain information
>TIGR03094 sulfo_cyanin sulfocyanin Back     alignment and domain information
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR02695 azurin azurin Back     alignment and domain information
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing Back     alignment and domain information
>PLN02604 oxidoreductase Back     alignment and domain information
>PRK02888 nitrous-oxide reductase; Validated Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
1x9r_A116 Umecyanin From Horse Raddish- Crystal Structure Of 1e-11
1ws7_A109 Crystal Structure Of Mavicyanin From Cucurbita Pepo 1e-11
2cbp_A96 Cucumber Basic Protein, A Blue Copper Protein Lengt 3e-07
1f56_A91 Spinach Plantacyanin Length = 91 5e-05
1jer_A138 Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 6e-04
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The Oxidised Form Length = 116 Back     alignment and structure 
Iteration: 1

 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/104 (31%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 67  REFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCS 126
            ++ +GG   W  P+D     Y  WA    F++GD + F +A+G   V  V KDA+ NC 
Sbjct: 2   EDYDVGGDMEWKRPSDPKF--YITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCK 59
Query: 127 TEYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170
            E P++  T          +GP Y+I    D+C   +KL++ V+
Sbjct: 60  KENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVV 103
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo Medullosa (Zucchini) Length = 109 Back     alignment and structure
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein Length = 96 Back     alignment and structure
>pdb|1F56|A Chain A, Spinach Plantacyanin Length = 91 Back     alignment and structure
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0 Length = 138 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 3e-39
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 2e-38
1jer_A138 Cucumber stellacyanin; electron transport, copper, 9e-37
2cbp_A96 Cucumber basic protein; electron transport, phytoc 2e-35
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 4e-32
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Length = 116 Back     alignment and structure
 Score =  131 bits (331), Expect = 3e-39
 Identities = 35/121 (28%), Positives = 56/121 (46%), Gaps = 7/121 (5%)

Query: 68  EFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCST 127
           ++ +GG   W  P+D     Y  WA    F++GD + F +A+G   V  V KDA+ NC  
Sbjct: 3   DYDVGGDMEWKRPSDPK--FYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKK 60

Query: 128 EYPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVLADRSNHLSNTTTGMSPS 187
           E P++  T          +GP Y+I    D+C   +KL++ V+            G +P 
Sbjct: 61  ENPISHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINVVGAGG-----AGGGATPG 115

Query: 188 S 188
           +
Sbjct: 116 A 116
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Length = 109 Back     alignment and structure
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138 Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Length = 96 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Length = 91 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
1jer_A138 Cucumber stellacyanin; electron transport, copper, 100.0
1ws8_A109 Mavicyanin; oxidized form, phytocyanin, cupredoxin 100.0
1x9u_A116 Umecyanin; cupredoxin, phytocyanin, copper binding 100.0
2cbp_A96 Cucumber basic protein; electron transport, phytoc 100.0
1f56_A91 Plantacyanin; cupredoxin, copper protein, beta bar 100.0
1qhq_A140 Protein (auracyanin); electron transfer, cupredoxi 99.26
1bxv_A91 Plastocyanin; copper protein, electron transfer; 1 99.15
2cal_A154 Rusticyanin; iron respiratory electron transport c 99.05
1iuz_A98 Plastocyanin; electron transport; 1.60A {Ulva pert 98.88
2aan_A139 Auracyanin A; cupredoxin fold, electron transport; 98.85
1plc_A99 Plastocyanin; electron transport; 1.33A {Populus n 98.82
2gim_A106 Plastocyanin; beta sheet, Cu, helix, electron tran 98.82
1pmy_A123 Pseudoazurin; electron transfer(cuproprotein); 1.5 98.82
1paz_A123 Pseudoazurin precursor; electron transfer(cupropro 98.77
2plt_A98 Plastocyanin; electron transport; 1.50A {Chlamydom 98.77
1kdj_A102 Plastocyanin; electron transfer, photosystem, PAI- 98.74
1byp_A99 Protein (plastocyanin); electron transfer, photosy 98.72
1b3i_A97 PETE protein, protein (plastocyanin); electron tra 98.69
3tu6_A127 Pseudoazurin (blue copper protein); cupredoxins, b 98.68
3erx_A123 Pseudoazurin; copper protein, high-resolution, E t 98.66
1pcs_A98 Plastocyanin; electron transport; 2.15A {Synechocy 98.57
3ef4_A124 Pseudoazurin, blue copper protein; electron transf 98.57
3c75_A132 Amicyanin; copper proteins, electron transfer comp 98.08
3cvb_A105 Plastocyanin; cupredoxin, SELF assembly, copper, e 98.07
3ay2_A167 Lipid modified azurin protein; beta sandwich, bact 97.99
4hci_A100 Cupredoxin 1; structural genomics, niaid, national 97.98
1cuo_A129 Protein (azurin ISO-2); beta barrel, periplasmic, 97.95
2ux6_A122 Pseudoazurin; type-1 copper, metal-binding, redox 97.94
2ov0_A105 Amicyanin; beta-sandwich, electron transport; 0.75 97.88
1id2_A106 Amicyanin; beta barrel, type-1 blue copper protein 97.83
2iaa_C128 Azurin; quinoprotein, tryptophan tryptophylquinone 97.66
1nwp_A128 Azurin; electron transport, cupredoxin, electron t 97.63
1iko_P178 Ephrin-B2; greek KEY, glycosylation, signaling pro 97.57
2ccw_A129 Azurin II, AZN-2; electron transport (cuproprotein 97.56
2x11_B177 Ephrin-A5; receptor-signaling protein complex, dev 97.51
3czu_B182 Ephrin-A1; ATP-binding, kinase, nucleotide-binding 97.1
1shx_A138 Ephrin-A5; ephrin signaling, hormone-growth factor 97.02
3d12_B141 Ephrin-B3; beta propeller, protein-receptor comple 96.98
1iby_A112 Nitrosocyanin; RED copper, cupredoxin, beta hairpi 96.61
2vsm_B140 Ephrin-B2; developmental protein, henipavirus, neu 96.59
2cua_A135 Protein (CUA); CUA center, electron transport; 1.6 96.35
2wo3_B157 Ephrin-A2; transferase-signaling protein complex, 96.16
3hei_B132 Ephrin-A1; EPH receptor tyrosine kinase, cell memb 94.98
3fsa_A125 Azurin; copper, cupredoxin fold, metal-binding, pr 94.9
2dv6_A 447 Nitrite reductase; electron transfer, reduction, d 93.32
3s8f_B168 Cytochrome C oxidase subunit 2; complex IV, respir 92.03
1fwx_A595 Nitrous oxide reductase; beta-propeller domain, cu 91.78
3sbq_A638 Nitrous-oxide reductase; beta-propeller, cupredoxi 90.32
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
Probab=100.00  E-value=4.8e-42  Score=285.14  Aligned_cols=108  Identities=23%  Similarity=0.523  Sum_probs=101.3

Q ss_pred             ceeEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEE-CcccCCCCCCCCCcccccCCceEEEE
Q 025390           65 EAREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQV-NKDAYTNCSTEYPVARYTDGHTVFTF  143 (253)
Q Consensus        65 ~A~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V-~k~~YdsC~~s~pi~~~s~G~t~v~L  143 (253)
                      +|++|+|||+.||+++++  ..+|++||++++|+|||+|+|+|++++|+|+|| +|++|+.|+..+++..+++|+++|+|
T Consensus         2 ~a~~~~VGg~~GW~~~~~--~~~Y~~Wa~~~~F~vGD~LvF~y~~~~HsV~~V~~~~~y~~C~~s~p~~~~~~G~~~v~L   79 (138)
T 1jer_A            2 QSTVHIVGDNTGWSVPSS--PNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACNFVNSDNDVERTSPVIER   79 (138)
T ss_dssp             CCCEEETTGGGCSSCCSS--TTHHHHHHHTCCEETTCEEEECCCTTTCCCEEESCHHHHHHTCCTTSCCCCCCCSCEEEE
T ss_pred             CceEEEECCcCcCcCCCC--ccchhhhhcCCcCcCCCEEEEeecCCCceEEEeCchhhcCccCCCCccccccCCCeEEEe
Confidence            578999999999999853  258999999999999999999999999999999 99999999999999999999999999


Q ss_pred             -eccccEEEEeCCCCCCCCCCeEEEEEecCCC
Q 025390          144 -KQSGPYYFISGNKDNCVNNEKLAVIVLADRS  174 (253)
Q Consensus       144 -~~~G~~YFICgv~gHC~~GmKlaI~V~a~~s  174 (253)
                       +++|++||||++++||++||||+|+|.+.++
T Consensus        80 ~~~~G~~YFicg~~gHC~~GmKl~I~V~~~~~  111 (138)
T 1jer_A           80 LDELGMHYFVCTVGTHCSNGQKLSINVVAANA  111 (138)
T ss_dssp             CCSSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred             ccCCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence             9999999999999999999999999987654
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A Back     alignment and structure
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A Back     alignment and structure
>2cbp_A Cucumber basic protein; electron transport, phytocyanin, type 1 copper protein; 1.80A {Cucumis sativus} SCOP: b.6.1.1 Back     alignment and structure
>1f56_A Plantacyanin; cupredoxin, copper protein, beta barrel, plant protein; 2.05A {Spinacia oleracea} SCOP: b.6.1.1 Back     alignment and structure
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A Back     alignment and structure
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A Back     alignment and structure
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A Back     alignment and structure
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A Back     alignment and structure
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus} Back     alignment and structure
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A Back     alignment and structure
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A Back     alignment and structure
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1 Back     alignment and structure
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A* Back     alignment and structure
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1 Back     alignment and structure
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A Back     alignment and structure
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A Back     alignment and structure
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A* Back     alignment and structure
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti} Back     alignment and structure
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A Back     alignment and structure
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A Back     alignment and structure
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0 Back     alignment and structure
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} Back     alignment and structure
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A Back     alignment and structure
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae} Back     alignment and structure
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A Back     alignment and structure
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A Back     alignment and structure
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A Back     alignment and structure
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ... Back     alignment and structure
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1 Back     alignment and structure
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C* Back     alignment and structure
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A Back     alignment and structure
>1iko_P Ephrin-B2; greek KEY, glycosylation, signaling protein; HET: NAG MAN; 1.92A {Mus musculus} SCOP: b.6.1.5 Back     alignment and structure
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A Back     alignment and structure
>2x11_B Ephrin-A5; receptor-signaling protein complex, developmental protein, signaling platform, kinase, transferase, neurogenesis, receptor, cataract; 4.83A {Homo sapiens} Back     alignment and structure
>3czu_B Ephrin-A1; ATP-binding, kinase, nucleotide-binding, receptor, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG MAN; 2.65A {Homo sapiens} PDB: 3mbw_B* Back     alignment and structure
>1shx_A Ephrin-A5; ephrin signaling, hormone-growth factor complex; HET: NAG; 2.10A {Mus musculus} SCOP: b.6.1.5 PDB: 1shw_A* 3mx0_B* Back     alignment and structure
>3d12_B Ephrin-B3; beta propeller, protein-receptor complex, envelope protein, glycoprotein, hemagglutinin, hydrolase, membrane, signal-AN transmembrane; HET: NAG BMA MAN BGC LXZ NGA GL0 GLC LXB NGZ GXL; 3.00A {Mus musculus} Back     alignment and structure
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A Back     alignment and structure
>2vsm_B Ephrin-B2; developmental protein, henipavirus, neurogenesis, glycoprotein, paramyxovirus, envelope protein, cell surface receptor, hendra, virion; HET: NAG; 1.80A {Homo sapiens} PDB: 2wo2_B* 2i85_A 3gxu_B 2vsk_B 2hle_B 1kgy_E Back     alignment and structure
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B* Back     alignment and structure
>2wo3_B Ephrin-A2; transferase-signaling protein complex, EFN, EPHA4, KINA ephrin, complex, membrane, cell surface receptor, tyrosine- kinase, glycoprotein; HET: NAG; 2.35A {Homo sapiens} Back     alignment and structure
>3hei_B Ephrin-A1; EPH receptor tyrosine kinase, cell membrane, disulfi glycoprotein, GPI-anchor, lipoprotein, membrane, ATP-bindin kinase; 2.00A {Homo sapiens} SCOP: b.6.1.0 Back     alignment and structure
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ... Back     alignment and structure
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans} Back     alignment and structure
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ... Back     alignment and structure
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A Back     alignment and structure
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 253
d2cbpa_96 b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativ 5e-36
d1ws8a_104 b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) 1e-33
d1jera_110 b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativ 9e-32
d1f56a_91 b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia olera 1e-29
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 96 Back     information, alignment and structure

class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Plantacyanin
species: Cucumber (Cucumis sativus) [TaxId: 3659]

 Score =  121 bits (304), Expect = 5e-36
 Identities = 30/102 (29%), Positives = 46/102 (45%), Gaps = 8/102 (7%)

Query: 69  FLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTE 128
           +++GG G W       T N   W +  RF+ GD ++F Y     +V+ VN+  ++ C+T 
Sbjct: 3   YVVGGSGGW-------TFNTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTP 55

Query: 129 YPVARYTDGHTVFTFKQSGPYYFISGNKDNCVNNEKLAVIVL 170
                YT G         G  YFI     +C +  K+AV  L
Sbjct: 56  AGAKVYTSGRDQIKLP-KGQSYFICNFPGHCQSGMKIAVNAL 96
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Length = 104 Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Length = 110 Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 91 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
d1ws8a_104 Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663 100.0
d2cbpa_96 Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1jera_110 Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3 100.0
d1f56a_91 Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 99.97
d1bypa_99 Plastocyanin {White campion (Silene pratensis) [Ta 98.98
d1iuza_98 Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 98.86
d2plta_98 Plastocyanin {Green alga (Chlamydomonas reinhardti 98.8
d2cj3a1105 Plastocyanin {Anabaena variabilis [TaxId: 1172]} 98.79
d1kdja_102 Plastocyanin {Fern (Adiantum capillus-veneris) [Ta 98.78
d1adwa_123 Pseudoazurin {Thiosphaera pantotropha [TaxId: 8236 98.68
d1plca_99 Plastocyanin {Poplar (Populus nigra), variant ital 98.67
d2q5ba1105 Plastocyanin {Cyanobacterium (Phormidium laminosum 98.66
d2jxma197 Plastocyanin {Photosynthetic prokaryote (Prochloro 98.62
d1paza_120 Pseudoazurin {Alcaligenes faecalis, strain s-6 [Ta 98.56
d1pmya_123 Pseudoazurin {Methylobacterium extorquens, strain 98.49
d1bqka_124 Pseudoazurin {Achromobacter cycloclastes [TaxId: 2 98.48
d1qhqa_139 Auracyanin {Chloroflexus aurantiacus [TaxId: 1108] 98.37
d1pcsa_98 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.36
d1bxua_91 Plastocyanin {Cyanobacterium (Synechocystis sp.), 98.25
d2ov0a1105 Amicyanin {Paracoccus denitrificans [TaxId: 266]} 98.1
d1id2a_106 Amicyanin {Paracoccus versutus (Thiobacillus versu 97.7
d1cuoa_129 Azurin {Methylomonas sp. j [TaxId: 32038]} 97.48
d2ccwa1129 Azurin {Alcaligenes xylosoxidans, NCIMB (11015), d 97.29
d1shxa1138 Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} 97.09
d1e30a_153 Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920 97.04
d1ibya_112 Red copper protein nitrosocyanin {Nitrosomonas eur 96.91
d1ikop_141 Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 96.84
d1nwpa_128 Azurin {Pseudomonas putida [TaxId: 303]} 95.83
d1jzga_128 Azurin {Pseudomonas aeruginosa [TaxId: 287]} 95.71
d1fwxa1132 Nitrous oxide reductase, C-terminal domain {Paraco 95.56
d2cuaa_122 Cytochrome c oxidase {Thermus thermophilus, ba3 ty 95.24
d1qnia1131 Nitrous oxide reductase, C-terminal domain {Pseudo 94.89
d1aoza1129 Ascorbate oxidase {Zucchini (Cucurbita pepo var. m 94.72
d1kbva1151 Nitrite reductase, NIR {Neisseria gonorrhoeae, Ani 93.02
d1gyca1130 Laccase {Trametes versicolor, laccase 2 [TaxId: 53 90.99
d1oe2a1159 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 90.39
d1mzya1153 Nitrite reductase, NIR {Rhodobacter sphaeroides [T 86.09
d2q9oa1162 Laccase {Melanocarpus albomyces [TaxId: 204285]} 84.36
d2bw4a1157 Nitrite reductase, NIR {Alcaligenes xylosoxidans [ 84.22
d1hfua1131 Laccase {Inky cap fungus (Coprinus cinereus) [TaxI 82.51
>d1ws8a_ b.6.1.1 (A:) Mavicyanin {Zucchini (Cucurbita pepo) [TaxId: 3663]} Back     information, alignment and structure
class: All beta proteins
fold: Cupredoxin-like
superfamily: Cupredoxins
family: Plastocyanin/azurin-like
domain: Mavicyanin
species: Zucchini (Cucurbita pepo) [TaxId: 3663]

Probab=100.00  E-value=7.3e-39  Score=251.82  Aligned_cols=102  Identities=31%  Similarity=0.712  Sum_probs=98.0

Q ss_pred             eeEEEecCCCCCCCCCCCCCcchhhhhccCceeeCCEEEEEecCCCceEEEECcccCCCCCCCCCcccccCCceEEEEec
Q 025390           66 AREFLIGGKGNWGTPTDNTTLNYNQWAEKNRFQIGDSIVFKYASGQDSVLQVNKDAYTNCSTEYPVARYTDGHTVFTFKQ  145 (253)
Q Consensus        66 A~~~~VGg~~GWt~~~~~~~~~Y~~WAs~~tF~VGDsLvF~Y~~g~hsVv~V~k~~YdsC~~s~pi~~~s~G~t~v~L~~  145 (253)
                      |++|+|||+.||+++++   .+|++|+++++|+|||+|+|+|+++.|+|+||++++|++|+..+++..+++|++.|+|++
T Consensus         2 at~~~VGg~~gW~~~~~---~~Y~~Wa~~~~f~vGD~l~F~y~~~~h~V~~v~~~~y~~C~~~~~~~~~~~G~~~v~l~~   78 (104)
T d1ws8a_           2 ATVHKVGDSTGWTTLVP---YDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNSSSPAASYTSGADSIPLKR   78 (104)
T ss_dssp             CCEEETTGGGCSCSSSC---CCHHHHHHTSCBCTTCEEEEECCTTTCCEEEECHHHHHHTCCSSCSEEECSSEEEEECCS
T ss_pred             CcEEEeCCcCccCcCCC---cCHHHHhhCCcCCCCCEEEEEECCCCceEEEECHHHhcCCcCCCccccccCCCeEEEEec
Confidence            78999999999998764   479999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccEEEEeCCCCCCCCCCeEEEEEe
Q 025390          146 SGPYYFISGNKDNCVNNEKLAVIVL  170 (253)
Q Consensus       146 ~G~~YFICgv~gHC~~GmKlaI~V~  170 (253)
                      +|++||||++++||++||||+|+|+
T Consensus        79 ~g~~yF~C~~~~HC~~Gmkl~I~V~  103 (104)
T d1ws8a_          79 PGTFYFLCGIPGHCQLGQKVEIKVD  103 (104)
T ss_dssp             SEEEEEECCSTTTTTTTCEEEEEEC
T ss_pred             CccEEEECCCcchhhCCCEEEEEEC
Confidence            9999999999999999999999996
>d2cbpa_ b.6.1.1 (A:) Plantacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1jera_ b.6.1.1 (A:) Stellacyanin {Cucumber (Cucumis sativus) [TaxId: 3659]} Back     information, alignment and structure
>d1f56a_ b.6.1.1 (A:) Plantacyanin {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
>d1bypa_ b.6.1.1 (A:) Plastocyanin {White campion (Silene pratensis) [TaxId: 52853]} Back     information, alignment and structure
>d1iuza_ b.6.1.1 (A:) Plastocyanin {Ulva pertusa, a sea lettuce [TaxId: 3120]} Back     information, alignment and structure
>d2plta_ b.6.1.1 (A:) Plastocyanin {Green alga (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2cj3a1 b.6.1.1 (A:1-105) Plastocyanin {Anabaena variabilis [TaxId: 1172]} Back     information, alignment and structure
>d1kdja_ b.6.1.1 (A:) Plastocyanin {Fern (Adiantum capillus-veneris) [TaxId: 13818]} Back     information, alignment and structure
>d1adwa_ b.6.1.1 (A:) Pseudoazurin {Thiosphaera pantotropha [TaxId: 82367]} Back     information, alignment and structure
>d1plca_ b.6.1.1 (A:) Plastocyanin {Poplar (Populus nigra), variant italica [TaxId: 3691]} Back     information, alignment and structure
>d2q5ba1 b.6.1.1 (A:1-105) Plastocyanin {Cyanobacterium (Phormidium laminosum) [TaxId: 32059]} Back     information, alignment and structure
>d2jxma1 b.6.1.1 (A:1-97) Plastocyanin {Photosynthetic prokaryote (Prochlorothrix hollandica) [TaxId: 1223]} Back     information, alignment and structure
>d1paza_ b.6.1.1 (A:) Pseudoazurin {Alcaligenes faecalis, strain s-6 [TaxId: 511]} Back     information, alignment and structure
>d1pmya_ b.6.1.1 (A:) Pseudoazurin {Methylobacterium extorquens, strain am1 [TaxId: 408]} Back     information, alignment and structure
>d1bqka_ b.6.1.1 (A:) Pseudoazurin {Achromobacter cycloclastes [TaxId: 223]} Back     information, alignment and structure
>d1qhqa_ b.6.1.1 (A:) Auracyanin {Chloroflexus aurantiacus [TaxId: 1108]} Back     information, alignment and structure
>d1pcsa_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 6803 [TaxId: 1143]} Back     information, alignment and structure
>d1bxua_ b.6.1.1 (A:) Plastocyanin {Cyanobacterium (Synechocystis sp.), pcc 7942 [TaxId: 1143]} Back     information, alignment and structure
>d2ov0a1 b.6.1.1 (A:1-105) Amicyanin {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1id2a_ b.6.1.1 (A:) Amicyanin {Paracoccus versutus (Thiobacillus versutus) [TaxId: 34007]} Back     information, alignment and structure
>d1cuoa_ b.6.1.1 (A:) Azurin {Methylomonas sp. j [TaxId: 32038]} Back     information, alignment and structure
>d2ccwa1 b.6.1.1 (A:1-129) Azurin {Alcaligenes xylosoxidans, NCIMB (11015), different isoforms [TaxId: 85698]} Back     information, alignment and structure
>d1shxa1 b.6.1.5 (A:32-170) Ephrin-a5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1e30a_ b.6.1.1 (A:) Rusticyanin {Thiobacillus ferrooxidans [TaxId: 920]} Back     information, alignment and structure
>d1ibya_ b.6.1.4 (A:) Red copper protein nitrosocyanin {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1ikop_ b.6.1.5 (P:) Ephrin-b2 ectodomain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nwpa_ b.6.1.1 (A:) Azurin {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d1jzga_ b.6.1.1 (A:) Azurin {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1fwxa1 b.6.1.4 (A:452-581) Nitrous oxide reductase, C-terminal domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d2cuaa_ b.6.1.2 (A:) Cytochrome c oxidase {Thermus thermophilus, ba3 type [TaxId: 274]} Back     information, alignment and structure
>d1qnia1 b.6.1.4 (A:451-581) Nitrous oxide reductase, C-terminal domain {Pseudomonas nautica [TaxId: 2743]} Back     information, alignment and structure
>d1aoza1 b.6.1.3 (A:1-129) Ascorbate oxidase {Zucchini (Cucurbita pepo var. medullosa) [TaxId: 3663]} Back     information, alignment and structure
>d1kbva1 b.6.1.3 (A:13-163) Nitrite reductase, NIR {Neisseria gonorrhoeae, AniA [TaxId: 485]} Back     information, alignment and structure
>d1gyca1 b.6.1.3 (A:1-130) Laccase {Trametes versicolor, laccase 2 [TaxId: 5325]} Back     information, alignment and structure
>d1oe2a1 b.6.1.3 (A:1-159) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1mzya1 b.6.1.3 (A:41-193) Nitrite reductase, NIR {Rhodobacter sphaeroides [TaxId: 1063]} Back     information, alignment and structure
>d2q9oa1 b.6.1.3 (A:1-162) Laccase {Melanocarpus albomyces [TaxId: 204285]} Back     information, alignment and structure
>d2bw4a1 b.6.1.3 (A:8-164) Nitrite reductase, NIR {Alcaligenes xylosoxidans [TaxId: 85698]} Back     information, alignment and structure
>d1hfua1 b.6.1.3 (A:1-131) Laccase {Inky cap fungus (Coprinus cinereus) [TaxId: 5346]} Back     information, alignment and structure