Citrus Sinensis ID: 025395

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
MLAVFEKSIGKPPAELNLPSTGSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPSIPRSGSAANWADATAVEAE
cEEEEcccccccccccccccccccccccHHHHHHHHHHHccccEEEEcccccEEEEEEccccccccccccccccEEEEEcEEEEcHHHHHHHHccccccccHHHHHHHHHHHHHccccccccccccccccEEEEEEEccccEEEEEEEccccEEEEEEEEcccEEEEEEcccHHHHHccccccccccccEEEcccccEEEEEcccccccEEcccccccEEEEEEEEEcccccccccccccccccccccccccc
ccEEEccccccccHHHccccccccccccHHHHHHHHHHHccccEEEEEcccEEEEEcccccccccccEEEEcccEEEEEHccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHccccEEEEEEEccccEEEEEEcccccEEEEEEEcccccEEEccHHHHHHHHccccccccccccEEEcccccEEccccccccEEcccccccccEEcEEEEEccHHHHHccccccccHcHccccccccc
MLAVFEKsigkppaelnlpstgskkskSRQEIAEIFQILWPetilcnisngnfmglshenesplhprsivvmDDIFCMFIGTSENICELKrhyglsrqATEAMVLIEAYKVLrdrapyppdqvvkDLQGKFAFILFDAKshtlfaardcdggvdlnwgiagdgslicsndsnlmkeacgiscapfppgcmfmngtglmsfvhpLHKVRAivhedddrqiggvSFQVDlytrlpsiprsgsaanwadaTAVEAE
mlavfeksigkppaelnlpstgskksksRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTrlpsiprsgsaanwadATAVEAE
MLAVFEKSIGKPPAELNLPSTGSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPSIPRSGSAANWADATAVEAE
*******************************IAEIFQILWPETILCNISNGNFMGLSHE***PLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPS*******************
MLAVFEKSIGKP***********************FQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLP***RSGSAANWA*A******
MLAVFEKSIGKPPAELNL************EIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPSIPRSGSAANWADATAVEAE
ML**FEKSIGKPPAELNL*S****KSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPS*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLAVFEKSIGKPPAELNLPSTGSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPSIPRSGSAANWADATAVEAE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query253 2.2.26 [Sep-21-2011]
P24805149 Stem-specific protein TSJ N/A no 0.581 0.986 0.644 1e-53
Q54MB4 557 Probable asparagine synth yes no 0.292 0.132 0.386 2e-06
Q10MX3 604 Asparagine synthetase [gl no no 0.296 0.124 0.342 3e-05
Q43011 591 Asparagine synthetase [gl no no 0.296 0.126 0.342 0.0002
P49094 586 Asparagine synthetase [gl N/A no 0.296 0.127 0.328 0.0003
O24661 586 Asparagine synthetase [gl N/A no 0.324 0.139 0.321 0.0004
P49091 586 Asparagine synthetase [gl N/A no 0.296 0.127 0.328 0.0006
>sp|P24805|TSJT1_TOBAC Stem-specific protein TSJT1 OS=Nicotiana tabacum GN=TSJT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  209 bits (533), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 96/149 (64%), Positives = 123/149 (82%), Gaps = 2/149 (1%)

Query: 1   MLAVFEKSIGKPPAELNLPSTG--SKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSH 58
           MLAVFE+SIG+PP EL+LP  G   K++K+R+EIAE F+    ++   ++ NGNFM  SH
Sbjct: 1   MLAVFEQSIGRPPPELSLPQAGIQKKEAKTREEIAESFKTWKQDSTFYHLFNGNFMAFSH 60

Query: 59  ENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPY 118
            NE+PL PRSIVVMDD+FC+F G  +N  +L++HYGLSRQATEAM+++EAYKVLRDRAPY
Sbjct: 61  GNENPLQPRSIVVMDDVFCIFSGALDNTFDLRKHYGLSRQATEAMIMVEAYKVLRDRAPY 120

Query: 119 PPDQVVKDLQGKFAFILFDAKSHTLFAAR 147
           PPDQV+K+L+GKFAFILFD+K+ TLF AR
Sbjct: 121 PPDQVIKELEGKFAFILFDSKASTLFLAR 149

Nicotiana tabacum (taxid: 4097)
>sp|Q54MB4|ASNS_DICDI Probable asparagine synthetase [glutamine-hydrolyzing] OS=Dictyostelium discoideum GN=asns PE=1 SV=1 Back     alignment and function description
>sp|Q10MX3|ASNS1_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 1 OS=Oryza sativa subsp. japonica GN=Os03g0291500 PE=2 SV=1 Back     alignment and function description
>sp|Q43011|ASNS2_ORYSJ Asparagine synthetase [glutamine-hydrolyzing] 2 OS=Oryza sativa subsp. japonica GN=Os06g0265000 PE=2 SV=3 Back     alignment and function description
>sp|P49094|ASNS_MAIZE Asparagine synthetase [glutamine-hydrolyzing] OS=Zea mays GN=ASN1 PE=2 SV=2 Back     alignment and function description
>sp|O24661|ASNS_TRIVS Asparagine synthetase [glutamine-hydrolyzing] OS=Triphysaria versicolor GN=AS PE=2 SV=3 Back     alignment and function description
>sp|P49091|ASNS_BRAOL Asparagine synthetase [glutamine-hydrolyzing] OS=Brassica oleracea PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
356555204254 PREDICTED: stem-specific protein TSJT1-l 0.984 0.980 0.662 1e-98
76160988248 TSJT1-like protein [Solanum tuberosum] 0.980 1.0 0.653 6e-95
78191428247 TSJT1-like protein [Solanum tuberosum] 0.956 0.979 0.648 5e-92
359483468186 PREDICTED: uncharacterized protein LOC10 0.735 1.0 0.736 6e-80
148910276252 unknown [Picea sitchensis] 0.968 0.972 0.508 1e-61
296086983151 unnamed protein product [Vitis vinifera] 0.596 1.0 0.721 5e-61
284521002255 stem-specific protein tsjt1, putative [J 0.968 0.960 0.482 8e-61
388511014254 unknown [Lotus japonicus] 0.968 0.964 0.478 2e-60
449446945254 PREDICTED: stem-specific protein TSJT1-l 0.972 0.968 0.468 4e-60
225461387255 PREDICTED: stem-specific protein TSJT1 [ 0.968 0.960 0.458 5e-60
>gi|356555204|ref|XP_003545925.1| PREDICTED: stem-specific protein TSJT1-like [Glycine max] Back     alignment and taxonomy information
 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 165/249 (66%), Positives = 202/249 (81%)

Query: 1   MLAVFEKSIGKPPAELNLPSTGSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHEN 60
           MLAVF K+IGKPP EL LP+ GS  SK+ +EI + FQ LWP++ + N+ +GNFM LSHE+
Sbjct: 1   MLAVFAKAIGKPPEELRLPAMGSNNSKTPEEIVQKFQSLWPDSAVYNLPHGNFMALSHED 60

Query: 61  ESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPP 120
           ESP+HPR IVV+DDIFC+F+G   NI EL+ HYGL RQATEAM++IEAYK LRDRAPYPP
Sbjct: 61  ESPIHPRCIVVLDDIFCIFMGALANIAELRHHYGLPRQATEAMIVIEAYKALRDRAPYPP 120

Query: 121 DQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACGI 180
           DQV K L GKFAFI+FDAK++TLF ARD +G V   WG+A DGSL+CS+D  +++E CG 
Sbjct: 121 DQVAKHLDGKFAFIIFDAKTYTLFIARDREGSVKFQWGMARDGSLVCSDDPTIIREGCGQ 180

Query: 181 SCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPSIPRSGS 240
           +CA FPPGC+F+NG+GL SF HPLHKV+A+ HEDD   I  V FQVDLYT++PSIPR+GS
Sbjct: 181 ACAAFPPGCIFINGSGLTSFDHPLHKVQAVAHEDDSGNILSVYFQVDLYTKIPSIPRTGS 240

Query: 241 AANWADATA 249
           AANWADA A
Sbjct: 241 AANWADAVA 249

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|76160988|gb|ABA40457.1| TSJT1-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|78191428|gb|ABB29935.1| TSJT1-like protein [Solanum tuberosum] Back     alignment and taxonomy information
>gi|359483468|ref|XP_003632964.1| PREDICTED: uncharacterized protein LOC100252186, partial [Vitis vinifera] Back     alignment and taxonomy information
>gi|148910276|gb|ABR18218.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|296086983|emb|CBI33239.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|284521002|gb|ADB93076.1| stem-specific protein tsjt1, putative [Jatropha curcas] Back     alignment and taxonomy information
>gi|388511014|gb|AFK43573.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|449446945|ref|XP_004141230.1| PREDICTED: stem-specific protein TSJT1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225461387|ref|XP_002284777.1| PREDICTED: stem-specific protein TSJT1 [Vitis vinifera] gi|302143042|emb|CBI20337.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
TAIR|locus:2123994250 AT4G27450 "AT4G27450" [Arabido 0.964 0.976 0.452 9.6e-57
TAIR|locus:2090116253 AT3G15450 "AT3G15450" [Arabido 0.980 0.980 0.426 2.4e-51
TAIR|locus:2084598248 AT3G22850 "AT3G22850" [Arabido 0.968 0.987 0.404 4e-51
TAIR|locus:2170822251 AT5G43830 "AT5G43830" [Arabido 0.968 0.976 0.415 2.5e-49
TAIR|locus:2182137234 AILP1 "AT5G19140" [Arabidopsis 0.889 0.961 0.406 2.2e-41
DICTYBASE|DDB_G0286059 557 asns "asparagine synthetase" [ 0.292 0.132 0.386 0.00015
TAIR|locus:2123994 AT4G27450 "AT4G27450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 584 (210.6 bits), Expect = 9.6e-57, P = 9.6e-57
 Identities = 113/250 (45%), Positives = 164/250 (65%)

Query:     1 MLAVFEKSIGKPPAELNLPSTG--SKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSH 58
             MLA+F ++   PP ELN P++   SK+ K  +E    F + +P     ++S G    L++
Sbjct:     1 MLAIFHEAFAHPPEELNSPASEKCSKQPKLPEETLNDFLLRYPLNTF-SMSFGQAAVLAY 59

Query:    59 ENESP---LHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDR 115
                S    +H R     DDI+C+F G+  N+C+L + YGL++   EAM +IEAY+ LRDR
Sbjct:    60 VRPSASFSIHQRLFCGFDDIYCLFFGSLNNLCQLNKQYGLTKTTNEAMFVIEAYRTLRDR 119

Query:   116 APYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMK 175
              PYP DQVVKDL G F+F+++D+K+ ++F A   DGGV L WGIA DGS++ S+D +++K
Sbjct:   120 GPYPADQVVKDLDGSFSFVVYDSKAGSVFTALGSDGGVKLYWGIAADGSVVISDDLDVIK 179

Query:   176 EACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQVDLYTRLPSI 235
             E C  S APFP GCMF +  GLMSF HP++K++A+   D +  + G +F+VD+Y R+ SI
Sbjct:   180 EGCAKSFAPFPTGCMFHSEGGLMSFEHPMNKIKAMPRVDSEGVLCGANFKVDVYNRVNSI 239

Query:   236 PRSGSAANWA 245
             PR GS ANW+
Sbjct:   240 PRRGSEANWS 249
GO:0008150 "biological_process" evidence=ND
GO:0005886 "plasma membrane" evidence=IDA
GO:0005634 "nucleus" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0001666 "response to hypoxia" evidence=RCA
GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA
GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA
TAIR|locus:2090116 AT3G15450 "AT3G15450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2084598 AT3G22850 "AT3G22850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2170822 AT5G43830 "AT5G43830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2182137 AILP1 "AT5G19140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0286059 asns "asparagine synthetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
pfam12481228 pfam12481, DUF3700, Aluminium induced protein 1e-112
cd01910224 cd01910, Wali7, This domain is present in Wali7, a 1e-107
cd00352220 cd00352, Gn_AT_II, Glutamine amidotransferases cla 1e-17
PTZ00077 586 PTZ00077, PTZ00077, asparagine synthetase-like pro 1e-08
PRK09431 554 PRK09431, asnB, asparagine synthetase B; Provision 4e-07
PLN02549 578 PLN02549, PLN02549, asparagine synthase (glutamine 3e-05
cd00712220 cd00712, AsnB, Glutamine amidotransferases class-I 4e-05
TIGR01536 466 TIGR01536, asn_synth_AEB, asparagine synthase (glu 3e-04
pfam13537120 pfam13537, GATase_7, Glutamine amidotransferase do 4e-04
cd03766181 cd03766, Gn_AT_II_novel, Gn_AT_II_novel 4e-04
COG0367 542 COG0367, AsnB, Asparagine synthase (glutamine-hydr 0.003
TIGR03108 628 TIGR03108, eps_aminotran_1, exosortase A system-as 0.003
>gnl|CDD|221596 pfam12481, DUF3700, Aluminium induced protein Back     alignment and domain information 
 Score =  321 bits (826), Expect = e-112
 Identities = 115/228 (50%), Positives = 151/228 (66%), Gaps = 3/228 (1%)

Query: 2   LAVFEKSIGKPPAELNLP---STGSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSH 58
           LAVF KS+ KPP ELN P      S K K  +E+ + F    P  +  N  +  F+  SH
Sbjct: 1   LAVFHKSVAKPPEELNSPASRLPSSAKKKGPEELLKDFVSANPNAVSVNFGDSAFLAYSH 60

Query: 59  ENESPLHPRSIVVMDDIFCMFIGTSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPY 118
             +SPL PR   V+DDIFC+F G  EN+  L++ YGLS+ A EAM++IEAY+ LRDR PY
Sbjct: 61  SKQSPLLPRLFAVVDDIFCLFQGHLENLASLRQQYGLSKTANEAMLVIEAYRTLRDRGPY 120

Query: 119 PPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEAC 178
           P DQVVKDL+G FAF+L+D+K+ T+F A D DG V L WGIA DGSL+ S+D  L+K  C
Sbjct: 121 PADQVVKDLEGSFAFVLYDSKTGTVFVALDADGSVPLFWGIAADGSLVFSDDLELLKAGC 180

Query: 179 GISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQV 226
           G S APFP GC F +  GL SF HP++K++A+   D + Q+ G +F+V
Sbjct: 181 GKSFAPFPQGCFFSSEGGLRSFEHPMNKLKAVPRVDSEGQMCGATFKV 228

This domain family is found in eukaryotes, and is approximately 120 amino acids in length. There are two conserved sequence motifs: YGL and LRDR. This family is related to GATase enzyme domains. Length = 228
>gnl|CDD|238891 cd01910, Wali7, This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information
>gnl|CDD|238212 cd00352, Gn_AT_II, Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>gnl|CDD|185431 PTZ00077, PTZ00077, asparagine synthetase-like protein; Provisional Back     alignment and domain information
>gnl|CDD|236513 PRK09431, asnB, asparagine synthetase B; Provisional Back     alignment and domain information
>gnl|CDD|178164 PLN02549, PLN02549, asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|238364 cd00712, AsnB, Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information
>gnl|CDD|233454 TIGR01536, asn_synth_AEB, asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>gnl|CDD|222208 pfam13537, GATase_7, Glutamine amidotransferase domain Back     alignment and domain information
>gnl|CDD|239735 cd03766, Gn_AT_II_novel, Gn_AT_II_novel Back     alignment and domain information
>gnl|CDD|223444 COG0367, AsnB, Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|132152 TIGR03108, eps_aminotran_1, exosortase A system-associated amidotransferase 1 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 253
cd01910224 Wali7 This domain is present in Wali7, a protein o 100.0
PF12481228 DUF3700: Aluminium induced protein ; InterPro: IPR 100.0
PLN02549 578 asparagine synthase (glutamine-hydrolyzing) 100.0
PRK09431 554 asnB asparagine synthetase B; Provisional 100.0
PTZ00077 586 asparagine synthetase-like protein; Provisional 100.0
KOG0571 543 consensus Asparagine synthase (glutamine-hydrolyzi 100.0
COG0367 542 AsnB Asparagine synthase (glutamine-hydrolyzing) [ 100.0
TIGR03104 589 trio_amidotrans asparagine synthase family amidotr 100.0
cd00712220 AsnB Glutamine amidotransferases class-II (GATase) 100.0
TIGR01536 467 asn_synth_AEB asparagine synthase (glutamine-hydro 100.0
TIGR03108 628 eps_aminotran_1 exosortase 1 system-associated ami 100.0
PRK08525 445 amidophosphoribosyltransferase; Provisional 100.0
cd03766181 Gn_AT_II_novel Gn_AT_II_novel. This asparagine syn 100.0
PRK07631 475 amidophosphoribosyltransferase; Provisional 100.0
cd00714215 GFAT Glutamine amidotransferases class-II (Gn-AT)_ 100.0
PRK06388 474 amidophosphoribosyltransferase; Provisional 100.0
PRK07272 484 amidophosphoribosyltransferase; Provisional 100.0
PRK07349 500 amidophosphoribosyltransferase; Provisional 100.0
PRK08341 442 amidophosphoribosyltransferase; Provisional 100.0
PRK06781 471 amidophosphoribosyltransferase; Provisional 99.98
PLN02440 479 amidophosphoribosyltransferase 99.98
PRK09123 479 amidophosphoribosyltransferase; Provisional 99.97
cd01907249 GlxB Glutamine amidotransferases class-II (Gn-AT)_ 99.97
cd00715252 GPATase_N Glutamine amidotransferases class-II (GN 99.97
PRK07847 510 amidophosphoribosyltransferase; Provisional 99.97
PRK05793 469 amidophosphoribosyltransferase; Provisional 99.97
PRK09246 501 amidophosphoribosyltransferase; Provisional 99.97
PRK00331 604 glucosamine--fructose-6-phosphate aminotransferase 99.97
TIGR01134 442 purF amidophosphoribosyltransferase. Alternate nam 99.97
TIGR01135 607 glmS glucosamine--fructose-6-phosphate aminotransf 99.97
cd01909199 betaLS_CarA_N Glutamine amidotransferases class-II 99.97
cd00352220 Gn_AT_II Glutamine amidotransferases class-II (GAT 99.97
PF13537125 GATase_7: Glutamine amidotransferase domain; PDB: 99.96
PTZ00295 640 glucosamine-fructose-6-phosphate aminotransferase; 99.96
COG0034 470 PurF Glutamine phosphoribosylpyrophosphate amidotr 99.94
PF13522133 GATase_6: Glutamine amidotransferase domain 99.94
PTZ00394 670 glucosamine-fructose-6-phosphate aminotransferase; 99.93
PLN02981 680 glucosamine:fructose-6-phosphate aminotransferase 99.93
KOG0572 474 consensus Glutamine phosphoribosylpyrophosphate am 99.92
COG0449 597 GlmS Glucosamine 6-phosphate synthetase, contains 99.89
cd00713413 GltS Glutamine amidotransferases class-II (Gn-AT), 99.76
cd01908257 YafJ Glutamine amidotransferases class-II (Gn-AT)_ 99.72
TIGR03442251 conserved hypothetical protein TIGR03442. Members 99.68
PF00310361 GATase_2: Glutamine amidotransferases class-II; In 99.61
KOG1268 670 consensus Glucosamine 6-phosphate synthetases, con 99.59
KOG0573 520 consensus Asparagine synthase [Amino acid transpor 99.52
PRK11750 1485 gltB glutamate synthase subunit alpha; Provisional 99.29
PF13230271 GATase_4: Glutamine amidotransferases class-II; PD 98.67
COG0067371 GltB Glutamate synthase domain 1 [Amino acid trans 98.51
PF09147201 DUF1933: Domain of unknown function (DUF1933); Int 97.59
COG0121252 Predicted glutamine amidotransferase [General func 96.79
KOG0399 2142 consensus Glutamate synthase [Amino acid transport 94.1
>cd01910 Wali7 This domain is present in Wali7, a protein of unknown function, expressed in wheat and induced by aluminum Back     alignment and domain information 
Probab=100.00  E-value=1.7e-57  Score=392.90  Aligned_cols=224  Identities=49%  Similarity=0.906  Sum_probs=205.2

Q ss_pred             eeeecCCcCCCCccccCCCCCCCchHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCCCCCCCceEEeCCcEEEEEEE
Q 025395            2 LAVFEKSIGKPPAELNLPSTGSKKSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENESPLHPRSIVVMDDIFCMFIG   81 (253)
Q Consensus         2 l~vf~~~~~~~P~~l~~~~~~~~~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~~~~~QP~~~~~~~~~lv~nG   81 (253)
                      ||||+|+||+|||||++|.++.. +..-.++++.+...-|++..+.+++...|+++.-..+.-.|.+++.+++++|++||
T Consensus         1 laif~~~~~~~p~el~~~~~~~~-~~~~~~~~~~f~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~rl~~~~~~~~~vfnG   79 (224)
T cd01910           1 LAVFSKAVAKPPEELVSAGSRTP-AKTAEELLKRFLSANPSAVFVHLGAAGFLAYSHHNQSPLHPRLFAVKDDIFCLFQG   79 (224)
T ss_pred             CcccccccCCCChHHcCCCcccc-CCCHHHHHHHHHhcCCCcEEEEcCCceEEEEecCCCCcccCcEECCCCCEEEEEEe
Confidence            89999999999999999987332 44556899999999999999999988999998766667788888888999999999


Q ss_pred             EEcchHHHHHHhcCCCCCCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEEC
Q 025395           82 TSENICELKRHYGLSRQATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAG  161 (253)
Q Consensus        82 eI~N~~eL~~~l~~~~s~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~  161 (253)
                      +|||+.+|+++|+..++.+|+|+|+++|++++++|+++.++++++|+|+|||+|||..++++++|||++|++||||+...
T Consensus        80 eIyN~~eLr~~lg~~~t~sD~evIl~lY~~~~d~G~y~~~~~l~~L~G~FAFvi~D~~~~~l~lARD~~Gi~PLYyg~~~  159 (224)
T cd01910          80 HLDNLGSLKQQYGLSKTANEAMLVIEAYRTLRDRGPYPADQVVKDLEGSFAFVLYDKKTSTVFVASDADGSVPLYWGIAA  159 (224)
T ss_pred             EEcCHHHHHHHhCCCCCCcHHHHHHHHHHHHHhcCCccHHHHHHhcCeEEEEEEEECCCCEEEEEEcCCCCcceEEEEeC
Confidence            99999999999977788899999999999877788777778999999999999999999999999999999999999877


Q ss_pred             CCeEEEEeCchhhhhhcCceeEEeCCCeEEEeCCceEEEeecCCccccccCCCChhhhhcceeEe
Q 025395          162 DGSLICSNDSNLMKEACGISCAPFPPGCMFMNGTGLMSFVHPLHKVRAIVHEDDDRQIGGVSFQV  226 (253)
Q Consensus       162 dg~~~faSe~~aL~~~~~~~i~~~ppG~~~~~~~g~~~y~~~~~~~~~~~~~ds~~~~~~~~f~v  226 (253)
                      ||.++||||+++|...|.+.+.+|||||||.++.|+++|++|.|+++++||+||+++|||++|+|
T Consensus       160 dG~l~FASElkaL~~~c~~~~~~FPpG~~~~s~ggl~~~~~p~~~~~~vp~~~s~g~~cg~~f~v  224 (224)
T cd01910         160 DGSVVFSDDVELVKASCGKSFAPFPKGCFFHSEGGLRSFEHPMNKLKAVPRVDSEGEMCGATFKV  224 (224)
T ss_pred             CCEEEEEeCHHHhhhhhccEEEEECCCCEEeCCCCEEEeeCCCchhhcCCcccCcccEecceeeC
Confidence            89999999999999999777899999999998666999999999999999999999999999997

Wali7 has a single domain similar to the glutamine amidotransferase domain of glucosamine-fructose 6-phosphate synthase (GLMS or GFAT), glutamine phosphoribosylpyrophosphate (Prpp) amidotransferase (GPATase), asparagine synthetase B (AsnB), beta lactam synthetase (beta-LS) and glutamate synthase (GltS). The Wali7 domain is also somewhat similar to the Ntn hydrolase fold of the proteasomal alph and beta subunits.
>PF12481 DUF3700: Aluminium induced protein ; InterPro: IPR024286 This entry represents a domain found in plant proteins that is approximately 120 amino acids in length Back     alignment and domain information
>PLN02549 asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>PRK09431 asnB asparagine synthetase B; Provisional Back     alignment and domain information
>PTZ00077 asparagine synthetase-like protein; Provisional Back     alignment and domain information
>KOG0571 consensus Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase Back     alignment and domain information
>cd00712 AsnB Glutamine amidotransferases class-II (GATase) asparagine synthase_B type Back     alignment and domain information
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing) Back     alignment and domain information
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1 Back     alignment and domain information
>PRK08525 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd03766 Gn_AT_II_novel Gn_AT_II_novel Back     alignment and domain information
>PRK07631 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd00714 GFAT Glutamine amidotransferases class-II (Gn-AT)_GFAT-type Back     alignment and domain information
>PRK06388 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07272 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK07349 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK08341 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK06781 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PLN02440 amidophosphoribosyltransferase Back     alignment and domain information
>PRK09123 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>cd01907 GlxB Glutamine amidotransferases class-II (Gn-AT)_GlxB-type Back     alignment and domain information
>cd00715 GPATase_N Glutamine amidotransferases class-II (GN-AT)_GPAT- type Back     alignment and domain information
>PRK07847 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK05793 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK09246 amidophosphoribosyltransferase; Provisional Back     alignment and domain information
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed Back     alignment and domain information
>TIGR01134 purF amidophosphoribosyltransferase Back     alignment and domain information
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing) Back     alignment and domain information
>cd01909 betaLS_CarA_N Glutamine amidotransferases class-II (GATase) asparagine synthase_betaLS-type Back     alignment and domain information
>cd00352 Gn_AT_II Glutamine amidotransferases class-II (GATase) Back     alignment and domain information
>PF13537 GATase_7: Glutamine amidotransferase domain; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A Back     alignment and domain information
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>COG0034 PurF Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PF13522 GATase_6: Glutamine amidotransferase domain Back     alignment and domain information
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional Back     alignment and domain information
>PLN02981 glucosamine:fructose-6-phosphate aminotransferase Back     alignment and domain information
>KOG0572 consensus Glutamine phosphoribosylpyrophosphate amidotransferase [Nucleotide transport and metabolism] Back     alignment and domain information
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>cd00713 GltS Glutamine amidotransferases class-II (Gn-AT), glutamate synthase (GltS)-type Back     alignment and domain information
>cd01908 YafJ Glutamine amidotransferases class-II (Gn-AT)_YafJ-type Back     alignment and domain information
>TIGR03442 conserved hypothetical protein TIGR03442 Back     alignment and domain information
>PF00310 GATase_2: Glutamine amidotransferases class-II; InterPro: IPR000583 A large group of biosynthetic enzymes are able to catalyse the removal of the ammonia group from glutamine and then to transfer this group to a substrate to form a new carbon-nitrogen group Back     alignment and domain information
>KOG1268 consensus Glucosamine 6-phosphate synthetases, contain amidotransferase and phosphosugar isomerase domains [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK11750 gltB glutamate synthase subunit alpha; Provisional Back     alignment and domain information
>PF13230 GATase_4: Glutamine amidotransferases class-II; PDB: 3MDN_D Back     alignment and domain information
>COG0067 GltB Glutamate synthase domain 1 [Amino acid transport and metabolism] Back     alignment and domain information
>PF09147 DUF1933: Domain of unknown function (DUF1933); InterPro: IPR015230 This domain is predominantly found in carbapenam synthetase, and is composed of two antiparallel six-stranded beta-sheets that form a sandwich, flanked on each side by two alpha-helices Back     alignment and domain information
>COG0121 Predicted glutamine amidotransferase [General function prediction only] Back     alignment and domain information
>KOG0399 consensus Glutamate synthase [Amino acid transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Length = 553 Back     alignment and structure
 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 12/98 (12%)

Query: 100 TEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGI 159
            E  V++  Y+         P+  + DLQG FAF L+D++       RD  G + L  G 
Sbjct: 99  CE--VILALYQE------KGPE-FLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGY 149

Query: 160 AGDGSL-ICSNDSNLMKEACGISCAPFPPGCMFMNGTG 196
              G L + S    L+     I    FP G    +  G
Sbjct: 150 DEHGQLYVASEMKALVPVCRTIK--EFPAGSYLWSQDG 185
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
1ct9_A 553 Asparagine synthetase B; amidotransferase, substra 100.0
1xff_A240 D-fructose-6-, glucosamine--fructose-6-phosphate a 100.0
1ao0_A 459 Glutamine phosphoribosylpyrophosphate amidotransfe 100.0
1ecf_A 504 Glutamine phosphoribosylpyrophosphate amidotransf; 99.97
2bpl_A 608 Glucosamine--fructose-6-phosphate aminotransferase 99.97
1jgt_A 513 Beta-lactam synthetase; asparagine synthetase, cla 99.96
1q15_A 503 CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, 99.95
3mdn_A274 Glutamine aminotransferase class-II domain protei; 99.91
1te5_A257 Conserved hypothetical protein; glutamine amidotra 99.8
1ea0_A 1479 Glutamate synthase [NADPH] large chain; oxidoreduc 99.7
1ofd_A 1520 Ferredoxin-dependent glutamate synthase 2; oxidore 99.69
>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1 Back     alignment and structure
Probab=100.00  E-value=9.6e-40  Score=316.99  Aligned_cols=200  Identities=21%  Similarity=0.282  Sum_probs=172.3

Q ss_pred             hHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCC---CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC---CCCC
Q 025395           26 SKSRQEIAEIFQILWPETILCNISNGNFMGLSHENE---SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL---SRQA   99 (253)
Q Consensus        26 ~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~---~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~---~~s~   99 (253)
                      ...+.+|+++|+|||||+.|++..++++|||+||+.   ..+.||+.+.+++++++|||+|||+.+|+++|..   |.+.
T Consensus        17 ~~~~~~m~~~l~hRGpD~~G~~~~~~~~lgh~Rlsi~~~~~~~QP~~~~~~~~~lv~NGeIyN~~eLr~~L~~~~~f~s~   96 (553)
T 1ct9_A           17 RKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQTG   96 (553)
T ss_dssp             HHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCSC
T ss_pred             HHHHHHHHHHHhccCCCcccEEEECCEEEEEEeeeeeCCCCCCCCeEeCCCCEEEEEEEEEECHHHHHHHHhccCccCCC
Confidence            566889999999999999999999999999999982   3689999988888999999999999999999964   8899


Q ss_pred             CHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhcC
Q 025395          100 TEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEACG  179 (253)
Q Consensus       100 sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~~  179 (253)
                      +|+|+|+++|++      ||.+ ++++|+|+|||++||..+++++++||++|+|||||+...++.++||||.++|...+.
T Consensus        97 sDtEvil~l~~~------~g~~-~l~~l~G~fa~~i~d~~~~~l~~aRD~~G~~PLy~~~~~~~~~~faSe~~al~~~~~  169 (553)
T 1ct9_A           97 SDCEVILALYQE------KGPE-FLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVCR  169 (553)
T ss_dssp             CTTHHHHHHHHH------HTTT-TGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTCS
T ss_pred             CcHHHHHHHHHH------HHHH-HHHhCCccEEEEEEECCCCEEEEEECCCCCCCeEEEEecCCEEEEeechHHHHhhcC
Confidence            999999999997      5654 999999999999999988999999999999999999854678999999999988766


Q ss_pred             ceeEEeCCCeEEEeCCc-eEEEeecCCccc-cccCCC-C-------------hhhhhcceeEeeecCCCC
Q 025395          180 ISCAPFPPGCMFMNGTG-LMSFVHPLHKVR-AIVHED-D-------------DRQIGGVSFQVDLYTRLP  233 (253)
Q Consensus       180 ~~i~~~ppG~~~~~~~g-~~~y~~~~~~~~-~~~~~d-s-------------~~~~~~~~f~v~~~~~l~  233 (253)
                      . |.+|||||++..++| +++||++.+... ..+..+ .             ...+++++..|.+|||||
T Consensus       170 ~-i~~l~pG~~~~~~~g~~~~yw~~~~~~~~~~~~~~~~~~~lr~~L~~aV~~rl~sdvpvgv~LSGGlD  238 (553)
T 1ct9_A          170 T-IKEFPAGSYLWSQDGEIRSYYHRDWFDYDAVKDNVTDKNELRQALEDSVKSHLMSDVPYGVLLSGGLD  238 (553)
T ss_dssp             E-EEECCTTEEEETTTCSEEECCCCGGGSHHHHTTCCCCHHHHHHHHHHHHHHHTCCSSCEEEECCSSHH
T ss_pred             C-EEEECCCeEEEEcCCcEEEeecCCccccccCCCHHHHHHHHHHHHHHHHHHHhcCCCceEEeCCCCcc
Confidence            5 899999999887666 899999875331 222211 1             134577899999999998
>1xff_A D-fructose-6-, glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; complex (transferase/inhibitor), glutamine amidotransferase; HET: GLU; 1.80A {Escherichia coli} SCOP: d.153.1.1 PDB: 1xfg_A* Back     alignment and structure
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1* Back     alignment and structure
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A* Back     alignment and structure
>2bpl_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; amidotransferase, ammonia channeling, glucosamine 6- phosphate synthase; HET: F6R; 2.05A {Escherichia coli} SCOP: c.80.1.1 d.153.1.1 PDB: 1jxa_A* 2j6h_A* 2vf4_X 2vf5_X* 3ooj_A* Back     alignment and structure
>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A* Back     alignment and structure
>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A* Back     alignment and structure
>3mdn_A Glutamine aminotransferase class-II domain protei; structural genomics, PSI-2, protein structure initiative; 2.09A {Ruegeria pomeroyi} Back     alignment and structure
>1te5_A Conserved hypothetical protein; glutamine amidotransferase, amidotransferase, structural genomics, PSI, protein structure initiative; 2.00A {Pseudomonas aeruginosa PAO1} SCOP: d.153.1.1 Back     alignment and structure
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* Back     alignment and structure
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
d1ct9a2192 Asparagine synthetase B, N-terminal domain {Escher 100.0
d1jgta2206 beta-Lactam synthetase {Streptomyces clavuligerus 100.0
d1gph12234 Glutamine PRPP amidotransferase, N-terminal domain 100.0
d1ecfa2249 Glutamine PRPP amidotransferase, N-terminal domain 99.97
d1q15a2204 beta-Lactam synthetase {Pectobacterium carotovorum 99.96
d1xffa_238 Glucosamine 6-phosphate synthase, N-terminal domai 99.96
d1te5a_253 Hypothetical protein YafJ (PA1307) {Pseudomonas ae 99.31
d1ea0a3422 Alpha subunit of glutamate synthase, N-terminal do 99.11
d1ofda3430 Alpha subunit of glutamate synthase, N-terminal do 99.1
>d1ct9a2 d.153.1.1 (A:1-192) Asparagine synthetase B, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ntn hydrolase-like
superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases)
family: Class II glutamine amidotransferases
domain: Asparagine synthetase B, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.9e-44  Score=302.24  Aligned_cols=170  Identities=21%  Similarity=0.315  Sum_probs=154.8

Q ss_pred             chHHHHHHHHHhHhcCCCCccEEEeCCeEEEEEeCCC---CCCCCceEEeCCcEEEEEEEEEcchHHHHHHhcC---CCC
Q 025395           25 KSKSRQEIAEIFQILWPETILCNISNGNFMGLSHENE---SPLHPRSIVVMDDIFCMFIGTSENICELKRHYGL---SRQ   98 (253)
Q Consensus        25 ~~~~~~~ml~~l~hRGpd~~g~~~~~~~~lgh~rl~~---~~~~QP~~~~~~~~~lv~nGeI~N~~eL~~~l~~---~~s   98 (253)
                      .++.+.+|++.|+|||||+.+++..++++|||+||+.   +.+.||+...+++++++|||+|||+.+|+++|..   +.+
T Consensus        16 ~~~~~~~m~~~l~hRGpD~~~~~~~~~~~lgh~Rlsi~~~~~~~~~~~~~~~~~~lv~NGeI~N~~~l~~~l~~~~~~~s   95 (192)
T d1ct9a2          16 LRKKALELSRLMRHRGPDWSGIYASDNAILAHERLSIVDVNAGAQPLYNQQKTHVLAVNGEIYNHQALRAEYGDRYQFQT   95 (192)
T ss_dssp             HHHHHHHHHHTTGGGCBTEEEEEECSSEEEEEEECCCSCTTTCCSSEECTTSCEEEEEEEEETTHHHHHHHHTTTSCCCS
T ss_pred             HHHHHHHHHHHhcccCCCCCCeEEeCCEEEEEEEEEEccccCCcccccccCCceEEEecCccchhHHHHHHHhcCcccCC
Confidence            3678999999999999999999999999999999983   4677888887889999999999999999999865   778


Q ss_pred             CCHHHHHHHHHHHhhhcCCCCHHHHhcccccceEEEEEeCCCCEEEEEEeCCCCceEEEEEECCCeEEEEeCchhhhhhc
Q 025395           99 ATEAMVLIEAYKVLRDRAPYPPDQVVKDLQGKFAFILFDAKSHTLFAARDCDGGVDLNWGIAGDGSLICSNDSNLMKEAC  178 (253)
Q Consensus        99 ~sD~e~il~ly~~~~~~g~~g~~~~l~~L~G~FAfvi~D~~~~~l~~aRD~~G~rPLyyg~~~dg~~~faSe~~aL~~~~  178 (253)
                      .+|+|+++++|++      |+.+ ++++|+|+|||++||..+++|++|||++|+|||||+..+++.++||||+++|...|
T Consensus        96 ~sDtevll~~~~~------~g~~-~~~~l~G~fa~~i~d~~~~~l~~aRD~~G~kPLyy~~~~~g~~~fsSE~k~L~~~~  168 (192)
T d1ct9a2          96 GSDCEVILALYQE------KGPE-FLDDLQGMFAFALYDSEKDAYLIGRDHLGIIPLYMGYDEHGQLYVASEMKALVPVC  168 (192)
T ss_dssp             CCTTHHHHHHHHH------HTTT-TGGGCCEEEEEEEEETTTTEEEEEECTTCCSCCEEEECTTCCEEEESSGGGTTTTC
T ss_pred             CCcHHHHHHHhhh------cchh-hhhhhhhheEEEEEecCcceeEEEEccccceeEEEEEecCcEEEEEeCHHHHHHhh
Confidence            8999999999997      6665 99999999999999999999999999999999999997667899999999999999


Q ss_pred             CceeEEeCCCeEEEeCCc-eEEEee
Q 025395          179 GISCAPFPPGCMFMNGTG-LMSFVH  202 (253)
Q Consensus       179 ~~~i~~~ppG~~~~~~~g-~~~y~~  202 (253)
                      .+ |.+|||||++.+++| +++||+
T Consensus       169 ~~-i~~~~pG~~l~~~~~~i~~y~~  192 (192)
T d1ct9a2         169 RT-IKEFPAGSYLWSQDGEIRSYYH  192 (192)
T ss_dssp             SE-EEECCTTEEEETTTCSEEECCC
T ss_pred             CC-eEEcCCccEEEEcCCcEEeecC
Confidence            87 799999999887755 999874
>d1jgta2 d.153.1.1 (A:4-209) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1gph12 d.153.1.1 (1:1-234) Glutamine PRPP amidotransferase, N-terminal domain {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ecfa2 d.153.1.1 (A:1-249) Glutamine PRPP amidotransferase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q15a2 d.153.1.1 (A:2-205) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]} Back     information, alignment and structure
>d1xffa_ d.153.1.1 (A:) Glucosamine 6-phosphate synthase, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1te5a_ d.153.1.1 (A:) Hypothetical protein YafJ (PA1307) {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase, N-terminal domain {Azospirillum brasilense [TaxId: 192]} Back     information, alignment and structure
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase, N-terminal domain {Synechocystis sp. [TaxId: 1143]} Back     information, alignment and structure