Citrus Sinensis ID: 025402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPHRPM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccEEccccccccccccHHHHccccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccEEEEEEccccccccccccccHHHcccEEEccccccccEEEEccccccccccEEEEEcccccEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAnrtysssdhhhfnnniniggvtaqvppvpnakqsrifvkadskdsslivkdghqwrkygqkvtkdnpsprayfrcsmassgcpvkkkvQRCMEDKSFLVATyegehnhdvqcsslgqsssltnycspkssivhcpdyqttdsfgsdvtldltlsgsnqetrpprnlmqvcDDKKKIEEYVASLTKDPSFTIAVADAVAssingpphrpm
Flexible Loop (DISEMBL)
MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIfvkadskdsslivkdghqwrkygqkvtkdnpsprayfrcsmassgcpvkkkVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLsgsnqetrpprnlmqvcDDKKKIEEYVASLTKDPSFTIAVADAVASsingpphrpm
Low Complexity Region (SEG)
MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFnnniniggVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPHRPM
Disordered region (IsUnstruct)
*********************NLRHLVKAMNNQCNDLLARIHEANRTYS**DHHHFNNNINIGGVTAQV**********IFV********LIVKDGHQWRKYG***********AYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ***********NYCSPKSSIVHCPDYQTTDSFGSDVTL*************************KIEEYVASLTKDPSFTIAVAD**************
Disordered Region (DISOPRED)
******K****************************************************************************ADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN*************************************************************************ASLTKDPSFTIAVADAVAS**********
Disordered Region (DISEMBL)
MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASS*********
Disordered Region (DISPRO)
MMILQMKLLQAKLEHVRKQ*******************************************************AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEH******************************************************************************KDPSFTIAVADAVA***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMILQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYSSSDHHHFNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPHRPM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q9SAH7	302	Probable WRKY transcripti	yes	no	0.675	0.566	0.454	5e-31
Q9C5T4	310	WRKY transcription factor	no	no	0.573	0.467	0.482	6e-31
Q9SK33	271	Probable WRKY transcripti	no	no	0.810	0.756	0.349	3e-30
Q9XEC3	528	Probable WRKY transcripti	no	no	0.407	0.195	0.462	1e-22
Q9C519	553	WRKY transcription factor	no	no	0.292	0.133	0.584	1e-22
Q93WT0	538	Probable WRKY transcripti	no	no	0.292	0.137	0.584	1e-22
Q9ZSI7	489	Probable WRKY transcripti	no	no	0.573	0.296	0.321	2e-21
Q9C9F0	374	Probable WRKY transcripti	no	no	0.446	0.302	0.433	9e-21
Q8VWV6	480	Probable WRKY transcripti	no	no	0.296	0.156	0.564	3e-20
Q9LXG8	548	Probable WRKY transcripti	no	no	0.347	0.160	0.483	8e-20

>sp|Q9SAH7|WRK40_ARATH Probable WRKY transcription factor 40 OS=Arabidopsis thaliana GN=WRKY40 PE=1 SV=1

 Score =  134 bits (338), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 79/174 (45%), Positives = 107/174 (61%), Gaps = 3/174 (1%)

Query: 72  VPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKK 131
           V   K SR++ K ++ D++L+VKDG+QWRKYGQKVT+DNPSPRAYF+C+ A S C VKKK
Sbjct: 124 VVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPS-CSVKKK 182

Query: 132 VQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDV 191
           VQR +ED+S LVATYEGEHNH +  S +  ++ L  + S   S           S    V
Sbjct: 183 VQRSVEDQSVLVATYEGEHNHPMP-SQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPV 241

Query: 192 TLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 245
           T  + +  S + T P   +      K  +E+  +SLTKDP+FT A+A AV   +
Sbjct: 242 TT-VDMIESKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKL 294

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9C5T4|WRK18_ARATH WRKY transcription factor 18 OS=Arabidopsis thaliana GN=WRKY18 PE=1 SV=2

 Score =  134 bits (337), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 84/174 (48%), Positives = 104/174 (59%), Gaps = 29/174 (16%)

Query: 75  AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQR 134
           AK S ++V  ++ D+SL VKDG QWRKYGQKVT+DNPSPRAYFRCS A S CPVKKKVQR
Sbjct: 157 AKVSTVYVPTETSDTSLTVKDGFQWRKYGQKVTRDNPSPRAYFRCSFAPS-CPVKKKVQR 215

Query: 135 CMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDVTLD 194
             ED S LVATYEG HNH      LG ++S  +  S   S              S VTLD
Sbjct: 216 SAEDPSLLVATYEGTHNH------LGPNASEGDATSQGGS--------------STVTLD 255

Query: 195 LTLSGSNQ---ETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 245
           L ++G ++   E     N MQ       I++  +SLTKD  FT A+A A++  +
Sbjct: 256 L-VNGCHRLALEKNERDNTMQEV----LIQQMASSLTKDSKFTAALAAAISGRL 304

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Positively modulates defense-related gene expression and disease resistance.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK33|WRK60_ARATH Probable WRKY transcription factor 60 OS=Arabidopsis thaliana GN=WRKY60 PE=1 SV=1

 Score =  132 bits (331), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 127/255 (49%), Gaps = 50/255 (19%)

Query: 8   LLQAKLEHVRKQNENLRHLVK-------AMNNQCNDLLAR-----IHEANRTYSSSDHHH 55
           +LQ ++  V  +N+ L  ++        A+NN   +L +R     ++  N+  +      
Sbjct: 44  MLQDEINRVNSENKKLTEMLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGKRKQE 103

Query: 56  FNNNIN--IGGVTAQVPPVPNAKQ--SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNP 111
            +  ++  IG     +  + N K   S  +  A+  D+SL VKDG+QWRKYGQK+T+DNP
Sbjct: 104 LDEFVSSPIGLSLGPIENITNDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKITRDNP 163

Query: 112 SPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSP 171
           SPRAYFRCS + S C VKKKVQR  ED SFLVATYEG HNH                  P
Sbjct: 164 SPRAYFRCSFSPS-CLVKKKVQRSAEDPSFLVATYEGTHNH----------------TGP 206

Query: 172 KSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQ-ETRPPRNLMQVCDDKKKIEEYVASLTKD 230
            +S+               V LDL   G    E +  R  +Q       +++  +SLTKD
Sbjct: 207 HASVSRT------------VKLDLVQGGLEPVEEKKERGTIQEV----LVQQMASSLTKD 250

Query: 231 PSFTIAVADAVASSI 245
           P FT A+A A++  +
Sbjct: 251 PKFTAALATAISGRL 265

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XEC3|WRK42_ARATH Probable WRKY transcription factor 42 OS=Arabidopsis thaliana GN=WRKY42 PE=2 SV=1

 Score =  107 bits (266), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/106 (46%), Positives = 72/106 (67%), Gaps = 3/106 (2%)

Query: 65  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 124
           V  Q       +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA  
Sbjct: 265 VIEQAAAEATMRKARVSVRARSE--APMLSDGCQWRKYGQKMAKGNPCPRAYYRCTMAV- 321

Query: 125 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCS 170
           GCPV+K+VQRC ED++ L+ TYEG HNH +  +++  +S+ T   S
Sbjct: 322 GCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTTAAAS 367

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C519|WRKY6_ARATH WRKY transcription factor 6 OS=Arabidopsis thaliana GN=WRKY6 PE=1 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 62/77 (80%), Gaps = 3/77 (3%)

Query: 76  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
           +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA+ GCPV+K+VQRC
Sbjct: 296 RKARVSVRARSE--APMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAT-GCPVRKQVQRC 352

Query: 136 MEDKSFLVATYEGEHNH 152
            ED+S L+ TYEG HNH
Sbjct: 353 AEDRSILITTYEGNHNH 369

Transcription factor involved in the control of processes related to senescence and pathogen defense. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93WT0|WRK31_ARATH Probable WRKY transcription factor 31 OS=Arabidopsis thaliana GN=WRKY31 PE=2 SV=1

 Score =  106 bits (265), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 45/77 (58%), Positives = 61/77 (79%), Gaps = 3/77 (3%)

Query: 76  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
           +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA  GCPV+K+VQRC
Sbjct: 281 RKARVSVRARSE--AAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMA-GGCPVRKQVQRC 337

Query: 136 MEDKSFLVATYEGEHNH 152
            ED+S L+ TYEG HNH
Sbjct: 338 AEDRSILITTYEGNHNH 354

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSI7|WRK47_ARATH Probable WRKY transcription factor 47 OS=Arabidopsis thaliana GN=WRKY47 PE=2 SV=2

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 65/202 (32%), Positives = 92/202 (45%), Gaps = 57/202 (28%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 64
           Q+  L+ +LE + ++N  L+HL+  ++   NDL  R+  A +T     HH  + ++   G
Sbjct: 98  QISRLKLELERLHEENHKLKHLLDEVSESYNDLQRRVLLARQTQVEGLHHKQHEDVPQAG 157

Query: 65  VTAQV----------------------------------PPVPNAKQ------------- 77
            +  +                                  P  P   Q             
Sbjct: 158 SSQALENRRPKDMNHETPATTLKRRSPDDVDGRDMHRGSPKTPRIDQNKSTNHEEQQNPH 217

Query: 78  -------SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKK 130
                  +R+ V+A S   +  V DG QWRKYGQK+ K NP PRAY+RC+MA  GCPV+K
Sbjct: 218 DQLPYRKARVSVRARS--DATTVNDGCQWRKYGQKMAKGNPCPRAYYRCTMA-VGCPVRK 274

Query: 131 KVQRCMEDKSFLVATYEGEHNH 152
           +VQRC ED + L  TYEG HNH
Sbjct: 275 QVQRCAEDTTILTTTYEGNHNH 296

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9F0|WRKY9_ARATH Probable WRKY transcription factor 9 OS=Arabidopsis thaliana GN=WRKY9 PE=2 SV=1

 Score =  100 bits (249), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 78/120 (65%), Gaps = 7/120 (5%)

Query: 76  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
           +++R+ V+A  + +++   DG QWRKYGQK  K NP PRAY+RC++A  GCPV+K+VQRC
Sbjct: 219 RKARVSVRARCETATM--NDGCQWRKYGQKTAKGNPCPRAYYRCTVAP-GCPVRKQVQRC 275

Query: 136 MEDKSFLVATYEGEHNH--DVQCSSLGQSSSLTNYCSPKSS--IVHCPDYQTTDSFGSDV 191
           +ED S L+ TYEG HNH   V  +++  ++S + +    SS  + H   YQT  +  S +
Sbjct: 276 LEDMSILITTYEGTHNHPLPVGATAMASTASTSPFLLLDSSDNLSHPSYYQTPQAIDSSL 335

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VWV6|WRK61_ARATH Probable WRKY transcription factor 61 OS=Arabidopsis thaliana GN=WRKY61 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/78 (56%), Positives = 60/78 (76%), Gaps = 3/78 (3%)

Query: 75  AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQR 134
            K++R+ V+  S+  +  + DG QWRKYGQK+ K NP PRAY+RC++A+S CPV+K+VQR
Sbjct: 174 VKKTRVSVR--SRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAAS-CPVRKQVQR 230

Query: 135 CMEDKSFLVATYEGEHNH 152
           C ED S L++TYEG HNH
Sbjct: 231 CSEDMSILISTYEGTHNH 248

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LXG8|WRK72_ARATH Probable WRKY transcription factor 72 OS=Arabidopsis thaliana GN=WRKY72 PE=2 SV=1

 Score = 97.4 bits (241), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 65/91 (71%), Gaps = 3/91 (3%)

Query: 76  KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
           K++R+ V+A  +  +  + DG QWRKYGQK+ K NP PRAY+RC++A  GCPV+K+VQRC
Sbjct: 211 KRARVCVRA--RCDTPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTVA-PGCPVRKQVQRC 267

Query: 136 MEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 166
            +D S L+ TYEG H+H +  S+   +S+ +
Sbjct: 268 ADDMSILITTYEGTHSHSLPLSATTMASTTS 298

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
147864790	259	hypothetical protein VITISV_036455 [Viti	0.940	0.918	0.484	2e-50
359476150	261	PREDICTED: WRKY transcription factor 18-	0.936	0.908	0.470	1e-46
296082063	262	unnamed protein product [Vitis vinifera]	0.936	0.904	0.474	1e-46
224141959	271	predicted protein [Populus trichocarpa]	0.865	0.808	0.470	5e-42
351724539	278	transcription factor [Glycine max] gi|16	0.905	0.823	0.425	2e-41
357437111	255	WRKY transcription factor [Medicago trun	0.889	0.882	0.420	9e-41
255639751	278	unknown [Glycine max]	0.905	0.823	0.425	1e-40
355398579	271	WRKY transcription factor [(Populus tome	0.873	0.815	0.445	1e-40
356552420	278	PREDICTED: probable WRKY transcription f	0.873	0.794	0.418	3e-40
356509880	261	PREDICTED: LOW QUALITY PROTEIN: probable	0.865	0.839	0.405	7e-38

>gi|147864790|emb|CAN84058.1| hypothetical protein VITISV_036455 [Vitis vinifera]

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 122/252 (48%), Positives = 161/252 (63%), Gaps = 14/252 (5%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 64
           ++++L+ +LE +RK+NE+LR  ++ M ++   L A + +   T S    H  + + N   
Sbjct: 12  KVEVLKIELERLRKENEDLRLXLEIMGSKYEVLQAHLQKNMATISPD--HGSSXDSNKRP 69

Query: 65  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 124
            T +V     AK S++FV+ + KD SL VKDG QWRKYGQK+TKDNPSPRAYFRCSMA  
Sbjct: 70  RTEEVS---VAKASQVFVRTNPKDKSLTVKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQ 126

Query: 125 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTT 184
            CPVKKKVQRC+ED S LVATYEG HNH+    +    SS +     K  + + P   T 
Sbjct: 127 -CPVKKKVQRCLEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTV 185

Query: 185 DSFGSDVTLDLTLS--GSNQETRPPRNLMQVCDDKK----KIEEYVASLTKDPSFTIAVA 238
           D F   VTLDLTLS  G+ QE R P+N M+  D +K    ++EEYVASLTKD +FT+A+A
Sbjct: 186 DPFQPTVTLDLTLSGTGTGQENRRPQNFMK--DYRKSNCGRVEEYVASLTKDTNFTLALA 243

Query: 239 DAVASSINGPPH 250
            AVA SI   P+
Sbjct: 244 AAVARSITDQPN 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476150|ref|XP_002282812.2| PREDICTED: WRKY transcription factor 18-like [Vitis vinifera]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 119/253 (47%), Positives = 159/253 (62%), Gaps = 16/253 (6%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 64
           ++++L+ +LE +RK+NE+LR  ++ M ++   L A + +   T S    H  + + N   
Sbjct: 12  KVEVLKIELERLRKENEDLRLGLEIMGSKYEVLQAHLQKNMATISPD--HGSSQDSNKRP 69

Query: 65  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 124
            T +V     AK S++FV+ + KD SL++KDG QWRKYGQK+TKDNPSPRAYFRCSMA  
Sbjct: 70  RTEEVS---VAKASQVFVRTNPKDKSLVMKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQ 126

Query: 125 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTT 184
            CPVKKKVQRCMED S LVATYEG HNH+    +    SS +     K  + + P   T 
Sbjct: 127 -CPVKKKVQRCMEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTV 185

Query: 185 DSFGSDVTLD----LTLSGSNQETRPPRNLMQVCDDKK----KIEEYVASLTKDPSFTIA 236
           D F   VTLD     T +G+ QE R P+N M+  D +K    ++EEYVASLTKD +FT+A
Sbjct: 186 DPFQPTVTLDLTLSGTGTGTGQEKRRPQNFME--DYRKSNCGRVEEYVASLTKDTNFTLA 243

Query: 237 VADAVASSINGPP 249
           +A AVA SI   P
Sbjct: 244 LAAAVARSITDQP 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082063|emb|CBI21068.3| unnamed protein product [Vitis vinifera]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 120/253 (47%), Positives = 158/253 (62%), Gaps = 16/253 (6%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 64
           ++++L+ +LE +RK+NE+LR  ++ M ++   L A + +   T S    H  + + N   
Sbjct: 13  KVEVLKIELERLRKENEDLRLGLEIMGSKYEVLQAHLQKNMATISPD--HGSSQDSNKRP 70

Query: 65  VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 124
            T +V     AK S++FV+ + KD SL VKDG QWRKYGQK+TKDNPSPRAYFRCSMA  
Sbjct: 71  RTEEVS---VAKASQVFVRTNPKDKSLTVKDGFQWRKYGQKITKDNPSPRAYFRCSMAPQ 127

Query: 125 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTT 184
            CPVKKKVQRCMED S LVATYEG HNH+    +    SS +     K  + + P   T 
Sbjct: 128 -CPVKKKVQRCMEDSSILVATYEGAHNHEPPHDAPAGGSSYSPDSPIKGLVANFPCPTTV 186

Query: 185 DSFGSDVTLD----LTLSGSNQETRPPRNLMQVCDDKK----KIEEYVASLTKDPSFTIA 236
           D F   VTLD     T +G+ QE R P+N M+  D +K    ++EEYVASLTKD +FT+A
Sbjct: 187 DPFQPTVTLDLTLSGTGTGTGQEKRRPQNFME--DYRKSNCGRVEEYVASLTKDTNFTLA 244

Query: 237 VADAVASSINGPP 249
           +A AVA SI   P
Sbjct: 245 LAAAVARSITDQP 257

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141959|ref|XP_002324328.1| predicted protein [Populus trichocarpa] gi|222865762|gb|EEF02893.1| predicted protein [Populus trichocarpa]

 Score =  177 bits (448), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/251 (47%), Positives = 151/251 (60%), Gaps = 32/251 (12%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN----RTYSS-SDHHHFNNN 59
           +++ LQ +LEH +K+NE+LR ++  M  + + L A I E      +T S+ +D     + 
Sbjct: 10  KVEALQFELEHRQKENESLRFMLGVMTRRFSILQAEIQETEEHQQKTASNLADGDQACHE 69

Query: 60  INIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRC 119
           I      A+   VP  K SRI V++ S D SLIVKDG+QWRKYGQKVTKDNPSPRAYFRC
Sbjct: 70  ILDSNKRARFE-VPITKASRILVRSHSNDKSLIVKDGYQWRKYGQKVTKDNPSPRAYFRC 128

Query: 120 SMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSS----- 174
           SMA + CPVKKKVQRC+ED S LVA+Y+GEHNH+    S GQ       CSP +S     
Sbjct: 129 SMAPN-CPVKKKVQRCVEDDSVLVASYDGEHNHEPN-GSHGQY-----LCSPHTSSSKIS 181

Query: 175 ----IVHCPDYQTTDSFGSDVTLDLTLSG-SNQETR-PPRNLMQVCD------DKKKIEE 222
               ++ CP           + LDLTLS  SNQ+   P +  M+ C       +K  IEE
Sbjct: 182 ITNHVLKCP--IEIPPLQPSIALDLTLSSPSNQQKENPSKRSMEDCGKINNNCNKNYIEE 239

Query: 223 YVASLTKDPSF 233
           YVASLTKDP+F
Sbjct: 240 YVASLTKDPTF 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724539|ref|NP_001237573.1| transcription factor [Glycine max] gi|166203234|gb|ABY84657.1| transcription factor [Glycine max]

 Score =  175 bits (443), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 159/270 (58%), Gaps = 41/270 (15%)

Query: 1   MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNI 60
           +M  +++ L+A+L+ VR++N  LR +++ +N++C  L   + + N+    + H   ++N 
Sbjct: 11  IMDEKVETLKAELQRVREENNTLRLMLEVLNSKCTKLEIHLQDINK----AQHKGMSSN- 65

Query: 61  NIGGVTAQVPP-----------VPNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTK 108
            IG VT  VPP           +P AK+  +IFV+   KD SLIVKDG+QWRKYGQKVTK
Sbjct: 66  QIGSVT--VPPMFDTNKRPRLELPTAKKPLQIFVRTHPKDDSLIVKDGYQWRKYGQKVTK 123

Query: 109 DNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNY 168
           DN SPRAYFRC MA   CP KKKVQRC+ DKS LVA Y+GEH+H      L +SSS T  
Sbjct: 124 DNASPRAYFRCYMAPI-CPAKKKVQRCLHDKSILVAIYDGEHSH----GPLDESSSSTPK 178

Query: 169 CSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDD-----------K 217
            S   +    P   +  +    + +DL LSG +Q  R      + C+D            
Sbjct: 179 GSSPVANNKLPLMTSVPNDKEAMNIDLALSGWSQTDR------RHCEDVMQQNNNNGGSN 232

Query: 218 KKIEEYVASLTKDPSFTIAVADAVASSING 247
            KIEEYV+SL KDP FT+++A+AVA +I G
Sbjct: 233 IKIEEYVSSLIKDPDFTMSLAEAVARTITG 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437111|ref|XP_003588831.1| WRKY transcription factor [Medicago truncatula] gi|355477879|gb|AES59082.1| WRKY transcription factor [Medicago truncatula]

 Score =  172 bits (437), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 108/257 (42%), Positives = 151/257 (58%), Gaps = 32/257 (12%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIH----EANRTYSSSDHHHFNNNI 60
           +++ L+ +L+ VR++N  LR +++ M+ +C  L + +     E +R   SS+H    +  
Sbjct: 8   KVETLELELQQVREENNTLRFMLEVMSIKCTKLESHLQDIKKEEHRGIISSNHQ-IESIP 66

Query: 61  NIGGVTAQVPPVPNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRC 119
           NI          P A++  ++FV+    D SLI+KDG+QWRKYGQKVTKDN SPRAYFRC
Sbjct: 67  NIDSSKRARLEFPTAQKPLQVFVRTQPNDESLIIKDGYQWRKYGQKVTKDNASPRAYFRC 126

Query: 120 SMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCP 179
           SMA S CP KKKVQ+C+ D+S LVATY+GEH+H V   S   SSS     +PK       
Sbjct: 127 SMAPS-CPAKKKVQKCIHDRSILVATYDGEHSHGVPNESFKPSSS-----TPK------- 173

Query: 180 DYQTTDSFGSDVTLDLTLSGSNQE---TRPPRNLMQVCDDKK--KIEEYVASLTKDPSFT 234
                   GS ++  L    S++E   TR   N+MQ    ++  KIEEY +SL KDP FT
Sbjct: 174 --------GSSISNKLPTRLSDKEAISTRICENVMQQFGVERHIKIEEYASSLIKDPDFT 225

Query: 235 IAVADAVASSINGPPHR 251
            A+A+AVA +I    H+
Sbjct: 226 AALAEAVARTITDQEHK 242

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255639751|gb|ACU20169.1| unknown [Glycine max]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 115/270 (42%), Positives = 158/270 (58%), Gaps = 41/270 (15%)

Query: 1   MMILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNI 60
           +M  +++ ++A+L+ VR++N  LR +++ ++++   L   + E N+T     H   ++N 
Sbjct: 11  IMDEKVETIKAELKRVREENNTLRMMLEVLSSKYTKLETHLQEINKT----QHKGMSSN- 65

Query: 61  NIGGVTAQVPPV-----------PNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTK 108
            IG VT  VPP+           P AK+  +IFVK   KD SLIVKDG+QWRKYGQKVTK
Sbjct: 66  QIGSVT--VPPMFQTNKRPRLEFPTAKKPLQIFVKTHPKDDSLIVKDGYQWRKYGQKVTK 123

Query: 109 DNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNY 168
           DN SPRAYFRC MA   CP KKKVQRC+ DKS LVA Y+GEH+H      L +SSS T  
Sbjct: 124 DNASPRAYFRCYMAPI-CPAKKKVQRCLHDKSILVAIYDGEHSH----GPLDESSSSTPK 178

Query: 169 CSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDD-----------K 217
            S   +    P   +  +    + +DL LSG +Q  R      + C+D            
Sbjct: 179 GSSPVANNKLPLMTSVPNDKEAMNIDLALSGWSQTDR------RHCEDVMQQNNNNGGSN 232

Query: 218 KKIEEYVASLTKDPSFTIAVADAVASSING 247
            KIEEYV+SL KDP FT+++A+AVA +I G
Sbjct: 233 IKIEEYVSSLIKDPDFTMSLAEAVARTITG 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355398579|gb|AER70306.1| WRKY transcription factor [(Populus tomentosa x P. bolleana) x P. tomentosa]

 Score =  172 bits (436), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 111/249 (44%), Positives = 147/249 (59%), Gaps = 28/249 (11%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE---------ANRTYSSSDHHH 55
           +++ L+ +LEH +K+NE LR +++ M  + + L A I E         +N T      H 
Sbjct: 10  KVEALRFELEHRQKENEKLRFMLEVMTRRFSILQAEIQETEEHQQKAASNLTEGDQACHE 69

Query: 56  FNNNINIGGVTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRA 115
             ++            VP  K SRI V++ S D SLIVKDG+QWRKYGQKVTKDNPSPRA
Sbjct: 70  ILDSNKRARFE-----VPITKASRILVRSHSNDKSLIVKDGYQWRKYGQKVTKDNPSPRA 124

Query: 116 YFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSS---LGQSSSLTNYCSPK 172
           YFRCSMA + CPVKKKVQRC++D S LVATY+GEHNH+   S    L   +S ++  S  
Sbjct: 125 YFRCSMAPN-CPVKKKVQRCVDDDSVLVATYDGEHNHEPNGSHGHYLCSPNSSSSKISIT 183

Query: 173 SSIVHCPDYQTTDSFGSDVTLDLTLS--GSNQETRPPRNLMQVCD------DKKKIEEYV 224
           + ++ CP           + LDLTLS   + QE +P +  M+ C       +K  IEEYV
Sbjct: 184 NHVLKCP--IEIPPLQPSIALDLTLSSPSNQQEEKPSKRSMEDCGKINNNHNKNYIEEYV 241

Query: 225 ASLTKDPSF 233
           ASLTKDP+F
Sbjct: 242 ASLTKDPNF 250

Source: (Populus tomentosa x P. bolleana) x P. tomentosa

Species: (Populus tomentosa x P. bolleana) x P. tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552420|ref|XP_003544566.1| PREDICTED: probable WRKY transcription factor 40-like [Glycine max]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 113/270 (41%), Positives = 161/270 (59%), Gaps = 49/270 (18%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 64
           +++ L+A+L+ VR++N  LR +++ +N++C  L   + E N+    + H   ++N  IG 
Sbjct: 15  KVETLKAELQRVREENNTLRLMLEVLNSKCTKLEIHLQEINK----AQHKGMSSN-QIGS 69

Query: 65  VTAQVPP-----------VPNAKQS-RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPS 112
           VT  VPP           +P AK+  +IFV+   KD SLIVKDG+QWRKYGQKVTKDN S
Sbjct: 70  VT--VPPMFDTNKRPRLELPTAKKPLQIFVRTHPKDDSLIVKDGYQWRKYGQKVTKDNAS 127

Query: 113 PRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN----HDVQCSSLGQSSSLTNY 168
           PRAYFRCSMA   CPVKKKVQRC+ DKS +VATY+GEHN    H+   S+   SS + N 
Sbjct: 128 PRAYFRCSMAPM-CPVKKKVQRCLHDKSIVVATYDGEHNHAAIHESSSSTSKGSSPVVNN 186

Query: 169 CSPKSSIVHCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDDKK---------- 218
               +SI++  +          + + L LSG +Q T   R+    C+D            
Sbjct: 187 LPLMTSILNDKE---------PMNIGLALSGWSQ-TDHRRH----CEDAMQQNNNNGGSN 232

Query: 219 -KIEEYVASLTKDPSFTIAVADAVASSING 247
            +IEEYV+SL K+P F++++A+AV  +I G
Sbjct: 233 IRIEEYVSSLIKNPDFSMSLAEAVVRTITG 262

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509880|ref|XP_003523671.1| PREDICTED: LOW QUALITY PROTEIN: probable WRKY transcription factor 40-like [Glycine max]

 Score =  163 bits (412), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 152/259 (58%), Gaps = 40/259 (15%)

Query: 5   QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRTYSSSDHHHFNNNINIGG 64
           +++ L+AKL+ V++ N  LR +++ ++++C  L + + E N    + +      +   G 
Sbjct: 4   EVETLEAKLQRVKEDNRTLRVMLETLSSKCEKLQSHLQEIN----NEEQQVGTKSDQSGS 59

Query: 65  VTAQVPPVPNA-KQSRIFVKADSKDSSLIVKDGHQWRKYGQK-VTKDNPSPRAYFRCSMA 122
           V    P    A K S+IF K   KD+SL+VKDG+QW+KYGQK VTKDNPSPRAYF+CS+A
Sbjct: 60  VLLARPEFSMAQKPSQIFFKTHPKDNSLMVKDGYQWKKYGQKKVTKDNPSPRAYFKCSLA 119

Query: 123 SSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIV------ 176
            S CPVKK+VQR ++DKS LVATYEG+HNH V    L  SSS+     P++SI+      
Sbjct: 120 PS-CPVKKRVQRSIQDKSILVATYEGKHNHGVFHDLLKPSSSI-----PETSIMINNLPM 173

Query: 177 -HCPDYQTTDSFGSDVTLDLTLSGSNQETRPPRNLMQVCDD---------KKKIEEYVAS 226
            + P+ + T      V +DL L   +Q        +++CDD         K KIE Y + 
Sbjct: 174 TNMPNDKDT------VNIDLALCNWDQTD------IRLCDDVKQQNDRGSKSKIEGYASP 221

Query: 227 LTKDPSFTIAVADAVASSI 245
           L KDP F + +A+AV  S+
Sbjct: 222 LVKDPDFIMPLAEAVVHSL 240

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2124874	310	WRKY18 "WRKY DNA-binding prote	0.470	0.383	0.532	1.1e-33
TAIR|locus:2025687	302	WRKY40 "WRKY DNA-binding prote	0.695	0.582	0.446	5.2e-33
TAIR|locus:2133432	489	WRKY47 [Arabidopsis thaliana (	0.339	0.175	0.528	9.7e-32
TAIR|locus:2047395	271	WRKY60 "WRKY DNA-binding prote	0.616	0.575	0.394	2.3e-31
UNIPROTKB|Q6IEL0	348	WRKY71 "Transcription factor W	0.648	0.471	0.441	2.7e-29
TAIR|locus:2137179	528	WRKY42 [Arabidopsis thaliana (	0.391	0.187	0.480	8e-28
TAIR|locus:2018052	553	WRKY6 [Arabidopsis thaliana (t	0.347	0.159	0.516	1.5e-27
TAIR|locus:2034964	480	WRKY61 "WRKY DNA-binding prote	0.545	0.287	0.4	5.4e-27
TAIR|locus:2120623	538	WRKY31 "WRKY DNA-binding prote	0.347	0.163	0.516	2.4e-26
TAIR|locus:2150876	548	WRKY72 "WRKY DNA-binding prote	0.347	0.160	0.483	1.1e-25

TAIR|locus:2124874 WRKY18 "WRKY DNA-binding protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
 Identities = 66/124 (53%), Positives = 80/124 (64%)

Query:    45 NRTYSSSDHHHFXXXXXXXXVTAQVPPVPN----AKQSRIFVKADSKDSSLIVKDGHQWR 100
             N + +   HHH         + +   PV +    AK S ++V  ++ D+SL VKDG QWR
Sbjct:   123 NSSSNEDHHHHHQQHEQKNQLLSCKRPVTDSFNKAKVSTVYVPTETSDTSLTVKDGFQWR 182

Query:   101 KYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLG 160
             KYGQKVT+DNPSPRAYFRCS A S CPVKKKVQR  ED S LVATYEG HNH    +S G
Sbjct:   183 KYGQKVTRDNPSPRAYFRCSFAPS-CPVKKKVQRSAEDPSLLVATYEGTHNHLGPNASEG 241

Query:   161 QSSS 164
              ++S
Sbjct:   242 DATS 245

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

TAIR|locus:2025687 WRKY40 "WRKY DNA-binding protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
 Identities = 80/179 (44%), Positives = 108/179 (60%)

Query:    72 VPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKK 131
             V   K SR++ K ++ D++L+VKDG+QWRKYGQKVT+DNPSPRAYF+C+ A S C VKKK
Sbjct:   124 VVKEKVSRVYYKTEASDTTLVVKDGYQWRKYGQKVTRDNPSPRAYFKCACAPS-CSVKKK 182

Query:   132 VQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSFGSDV 191
             VQR +ED+S LVATYEGEHNH +  S +  ++ L  + S   S           S    V
Sbjct:   183 VQRSVEDQSVLVATYEGEHNHPMP-SQIDSNNGLNRHISHGGSASTPVAANRRSSLTVPV 241

Query:   192 TLDLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSINGPPH 250
             T  + +  S + T P   +      K  +E+  +SLTKDP+FT A+A AV   +    H
Sbjct:   242 TT-VDMIESKKVTSPTSRIDFPQVQKLLVEQMASSLTKDPNFTAALAAAVTGKLYQQNH 299

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0050691 "regulation of defense response to virus by host" evidence=IGI

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009646 "response to absence of light" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

TAIR|locus:2133432 WRKY47 [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 9.7e-32, Sum P(3) = 9.7e-32
 Identities = 47/89 (52%), Positives = 65/89 (73%)

Query:    76 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
             +++R+ V+A S D++  V DG QWRKYGQK+ K NP PRAY+RC+MA  GCPV+K+VQRC
Sbjct:   223 RKARVSVRARS-DATT-VNDGCQWRKYGQKMAKGNPCPRAYYRCTMAV-GCPVRKQVQRC 279

Query:   136 MEDKSFLVATYEGEHNHDVQCSSLGQSSS 164
              ED + L  TYEG HNH +  S+   +++
Sbjct:   280 AEDTTILTTTYEGNHNHPLPPSATAMAAT 308

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2047395 WRKY60 "WRKY DNA-binding protein 60" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 2.3e-31, Sum P(2) = 2.3e-31
 Identities = 69/175 (39%), Positives = 97/175 (55%)

Query:     8 LLQAKLEHVRKQNENLRHLVK-------AMNNQCNDLLAR-----IHEANRTYSSSDHHH 55
             +LQ ++  V  +N+ L  ++        A+NN   +L +R     ++  N+  +      
Sbjct:    44 MLQDEINRVNSENKKLTEMLARVCEKYYALNNLMEELQSRKSPESVNFQNKQLTGKRKQE 103

Query:    56 FXXXXXXXXVTAQVPPVPN-----AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDN 110
                      +   + P+ N     A  S  +  A+  D+SL VKDG+QWRKYGQK+T+DN
Sbjct:   104 LDEFVSSP-IGLSLGPIENITNDKATVSTAYFAAEKSDTSLTVKDGYQWRKYGQKITRDN 162

Query:   111 PSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSL 165
             PSPRAYFRCS + S C VKKKVQR  ED SFLVATYEG HNH    +S+ ++  L
Sbjct:   163 PSPRAYFRCSFSPS-CLVKKKVQRSAEDPSFLVATYEGTHNHTGPHASVSRTVKL 216

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0031347 "regulation of defense response" evidence=RCA;IMP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0042742 "defense response to bacterium" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=IEP;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0016045 "detection of bacterium" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

UNIPROTKB|Q6IEL0 WRKY71 "Transcription factor WRKY71" [Oryza sativa Indica Group (taxid:39946)]

 Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
 Identities = 76/172 (44%), Positives = 100/172 (58%)

Query:    76 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
             K S+++V AD  D SL+VKDG+QWRKYGQKVTKDNP PRAYFRCS A + CPVKKKVQR 
Sbjct:   175 KISKLYVHADPSDLSLVVKDGYQWRKYGQKVTKDNPCPRAYFRCSFAPA-CPVKKKVQRS 233

Query:   136 MEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSS--IVHCPDYQTTDSFGSDVTL 193
              ED + LVATYEGEHNH      L QS++  +  S KS+    H P              
Sbjct:   234 AEDNTILVATYEGEHNHGQPPPPL-QSAAQNSDGSGKSAGKPPHAPAAAPPAPVVPHRQH 292

Query:   194 DLTLSGSNQETRPPRNLMQVCDDKKKIEEYVASLTKDPSFTIAVADAVASSI 245
             +  +    Q+      +++    +   E+   +LT+DPSF  A+  A++  I
Sbjct:   293 EPVVVNGEQQAAAASEMIR----RNLAEQMAMTLTRDPSFKAALVTALSGRI 340

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0006952 "defense response" evidence=IMP

GO:0009685 "gibberellin metabolic process" evidence=IEP

TAIR|locus:2137179 WRKY42 [Arabidopsis thaliana (taxid:3702)]

 Score = 259 (96.2 bits), Expect = 8.0e-28, Sum P(3) = 8.0e-28
 Identities = 49/102 (48%), Positives = 69/102 (67%)

Query:    65 VTAQVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS 124
             V  Q       +++R+ V+A S+   L   DG QWRKYGQK+ K NP PRAY+RC+MA  
Sbjct:   265 VIEQAAAEATMRKARVSVRARSEAPML--SDGCQWRKYGQKMAKGNPCPRAYYRCTMAV- 321

Query:   125 GCPVKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 166
             GCPV+K+VQRC ED++ L+ TYEG HNH +  +++  +S+ T
Sbjct:   322 GCPVRKQVQRCAEDRTILITTYEGNHNHPLPPAAMNMASTTT 363

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2018052 WRKY6 [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 1.5e-27, Sum P(2) = 1.5e-27
 Identities = 47/91 (51%), Positives = 70/91 (76%)

Query:    76 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
             +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA+ GCPV+K+VQRC
Sbjct:   296 RKARVSVRARSE--APMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAT-GCPVRKQVQRC 352

Query:   136 MEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 166
              ED+S L+ TYEG HNH +  +++  +S+ T
Sbjct:   353 AEDRSILITTYEGNHNHPLPPAAVAMASTTT 383

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

GO:0016036 "cellular response to phosphate starvation" evidence=IMP

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IMP

GO:0080169 "cellular response to boron-containing substance deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2034964 WRKY61 "WRKY DNA-binding protein 61" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 5.4e-27, Sum P(2) = 5.4e-27
 Identities = 58/145 (40%), Positives = 87/145 (60%)

Query:    68 QVPPVPNAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCP 127
             ++ P    K++R+ V+  S+  +  + DG QWRKYGQK+ K NP PRAY+RC++A+S CP
Sbjct:   167 EILPQNLVKKTRVSVR--SRCETPTMNDGCQWRKYGQKIAKGNPCPRAYYRCTIAAS-CP 223

Query:   128 VKKKVQRCMEDKSFLVATYEGEHNHDVQCSSLGQSSSLTNYCSPKSSIVHCPDYQTTDSF 187
             V+K+VQRC ED S L++TYEG HNH +  S+   +S+ +   S   S          D  
Sbjct:   224 VRKQVQRCSEDMSILISTYEGTHNHPLPMSATAMASATSAAASMLLSGASSSSSAAADLH 283

Query:   188 GSDVTLDLTLSGSNQETRPPRNLMQ 212
             G    L+ +LSG+N   +P  + +Q
Sbjct:   284 G----LNFSLSGNNITPKPKTHFLQ 304

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010043 "response to zinc ion" evidence=RCA

TAIR|locus:2120623 WRKY31 "WRKY DNA-binding protein 31" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 2.4e-26, Sum P(2) = 2.4e-26
 Identities = 47/91 (51%), Positives = 68/91 (74%)

Query:    76 KQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRC 135
             +++R+ V+A S+  + ++ DG QWRKYGQK+ K NP PRAY+RC+MA  GCPV+K+VQRC
Sbjct:   281 RKARVSVRARSE--AAMISDGCQWRKYGQKMAKGNPCPRAYYRCTMAG-GCPVRKQVQRC 337

Query:   136 MEDKSFLVATYEGEHNHDVQCSSLGQSSSLT 166
              ED+S L+ TYEG HNH +  ++   +S+ T
Sbjct:   338 AEDRSILITTYEGNHNHPLPPAATAMASTTT 368

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2150876 WRKY72 "WRKY DNA-binding protein 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 243 (90.6 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
 Identities = 44/91 (48%), Positives = 64/91 (70%)

Query:    74 NAKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQ 133
             + K++R+ V+A     ++   DG QWRKYGQK+ K NP PRAY+RC++A  GCPV+K+VQ
Sbjct:   209 HVKRARVCVRARCDTPTM--NDGCQWRKYGQKIAKGNPCPRAYYRCTVAP-GCPVRKQVQ 265

Query:   134 RCMEDKSFLVATYEGEHNHDVQCSSLGQSSS 164
             RC +D S L+ TYEG H+H +  S+   +S+
Sbjct:   266 RCADDMSILITTYEGTHSHSLPLSATTMAST 296

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006952 "defense response" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
smart00774	59	smart00774, WRKY, DNA binding domain	2e-29
pfam03106	60	pfam03106, WRKY, WRKY DNA -binding domain	5e-28

>gnl|CDD|214815 smart00774, WRKY, DNA binding domain

 Score =  104 bits (263), Expect = 2e-29
 Identities = 35/60 (58%), Positives = 44/60 (73%), Gaps = 1/60 (1%)

Query: 93  VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH 152
           + DG+QWRKYGQKV K +P PR+Y+RC+    GCP KK+VQR  +D S +  TYEGEH H
Sbjct: 1   LDDGYQWRKYGQKVIKGSPYPRSYYRCTYT-QGCPAKKQVQRSDDDPSVVEVTYEGEHTH 59

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding. Length = 59

>gnl|CDD|145969 pfam03106, WRKY, WRKY DNA -binding domain

 Score =  101 bits (253), Expect = 5e-28
 Identities = 34/61 (55%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 93  VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH 152
           + DG+ WRKYGQK  K +P PR+Y+RC+  S GCPVKK+V+R  +D   +  TYEGEHNH
Sbjct: 1   LDDGYNWRKYGQKPVKGSPFPRSYYRCT--SPGCPVKKQVERSSDDPQIVEITYEGEHNH 58

Query: 153 D 153
            
Sbjct: 59  P 59

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	99.97
smart00774	59	WRKY DNA binding domain. The WRKY domain is a DNA	99.97
PF04500	62	FLYWCH: FLYWCH zinc finger domain; InterPro: IPR00	96.19
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	94.14
COG4026	290	Uncharacterized protein containing TOPRIM domain,	90.68
PF00170	64	bZIP_1: bZIP transcription factor cAMP response el	87.92
PF05377	55	FlaC_arch: Flagella accessory protein C (FlaC); In	84.92
PF06295	128	DUF1043: Protein of unknown function (DUF1043); In	84.0
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	83.19
PF04201	162	TPD52: Tumour protein D52 family; InterPro: IPR007	82.11
PRK11677	134	hypothetical protein; Provisional	82.08

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=99.97  E-value=2.7e-33  Score=204.86  Aligned_cols=60  Identities=55%  Similarity=1.113  Sum_probs=52.1

Q ss_pred             ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCC
Q 025402           93 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDV  154 (253)
Q Consensus        93 ~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~  154 (253)
                      ++|||+|||||||.|+|+++||+||||++.  ||+|+|+|||+.+|+.+++|||+|+|||+.
T Consensus         1 ~~Dgy~WRKYGqK~i~g~~~pRsYYrCt~~--~C~akK~Vqr~~~d~~~~~vtY~G~H~h~k   60 (60)
T PF03106_consen    1 LDDGYRWRKYGQKNIKGSPYPRSYYRCTHP--GCPAKKQVQRSADDPNIVIVTYEGEHNHPK   60 (60)
T ss_dssp             --SSS-EEEEEEEEETTTTCEEEEEEEECT--TEEEEEEEEEETTCCCEEEEEEES--SS--
T ss_pred             CCCCCchhhccCcccCCCceeeEeeecccc--ChhheeeEEEecCCCCEEEEEEeeeeCCCC
Confidence            589999999999999999999999999997  799999999999999999999999999973

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

>smart00774 WRKY DNA binding domain

Probab=99.97  E-value=3.8e-32  Score=198.86  Aligned_cols=59  Identities=59%  Similarity=1.133  Sum_probs=56.0

Q ss_pred             ccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCC
Q 025402           93 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNH  152 (253)
Q Consensus        93 ~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH  152 (253)
                      ++|||+|||||||.|+|+++||+||||++.+ ||+|+|+|||+++|+.+++|||+|+|||
T Consensus         1 ~~DGy~WRKYGQK~ikgs~~pRsYYrCt~~~-~C~a~K~Vq~~~~d~~~~~vtY~g~H~h   59 (59)
T smart00774        1 LDDGYQWRKYGQKVIKGSPFPRSYYRCTYSQ-GCPAKKQVQRSDDDPSVVEVTYEGEHTH   59 (59)
T ss_pred             CCCcccccccCcEecCCCcCcceEEeccccC-CCCCcccEEEECCCCCEEEEEEeeEeCC
Confidence            4799999999999999999999999999943 6999999999999999999999999998

The WRKY domain is a DNA binding domain found in one or two copies in a superfamily of plant transcription factors. These transcription factors are involved in the regulation of various physiological programs that are unique to plants, including pathogen defense, senescence and trichome development. The domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger-like motif. It binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core is essential for function and WRKY binding.

>PF04500 FLYWCH: FLYWCH zinc finger domain; InterPro: IPR007588 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.19  E-value=0.0034  Score=43.44  Aligned_cols=52  Identities=33%  Similarity=0.558  Sum_probs=28.1

Q ss_pred             ccccCCccccccCccccCCCCCCcceeecccCCC-CCcccccceeecCCCcEEEEEeccccCC
Q 025402           91 LIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASS-GCPVKKKVQRCMEDKSFLVATYEGEHNH  152 (253)
Q Consensus        91 ~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~-gC~akKqVQr~~~D~~~~~vtY~G~HnH  152 (253)
                      .++-|||.-+++...      ....|+||+.... +|+|+=.+.  .++. . ++...++|||
T Consensus        10 ~L~~~Gy~y~~~~~~------~~~~~WrC~~~~~~~C~a~~~~~--~~~~-~-~~~~~~~HnH   62 (62)
T PF04500_consen   10 KLVYDGYRYYFNKRN------DGKTYWRCSRRRSHGCRARLITD--AGDG-R-VVRTNGEHNH   62 (62)
T ss_dssp             EEEETTEEEEEEEE-------SS-EEEEEGGGTTS----EEEEE----TT-E-EEE-S---SS
T ss_pred             EEEECCeEEECcCCC------CCcEEEEeCCCCCCCCeEEEEEE--CCCC-E-EEECCCccCC
Confidence            467899988776554      3468999998753 799988777  3344 3 3344499998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. C2H2-type (classical) zinc fingers (Znf) were the first class to be characterised. They contain a short beta hairpin and an alpha helix (beta/beta/alpha structure), where a single zinc atom is held in place by Cys(2)His(2) (C2H2) residues in a tetrahedral array. C2H2 Znf's can be divided into three groups based on the number and pattern of fingers: triple-C2H2 (binds single ligand), multiple-adjacent-C2H2 (binds multiple ligands), and separated paired-C2H2 []. C2H2 Znf's are the most common DNA-binding motifs found in eukaryotic transcription factors, and have also been identified in prokaryotes []. Transcription factors usually contain several Znf's (each with a conserved beta/beta/alpha structure) capable of making multiple contacts along the DNA, where the C2H2 Znf motifs recognise DNA sequences by binding to the major groove of DNA via a short alpha-helix in the Znf, the Znf spanning 3-4 bases of the DNA []. C2H2 Znf's can also bind to RNA and protein targets []. This entry represents a potential FLYWCH Zn-finger domain found in a number of eukaryotic proteins. FLYWCH is a C2H2-type zinc finger characterised by five conserved hydrophobic residues, containing the conserved sequence motif: F/Y-X(n)-L-X(n)-F/Y-X(n)-WXCX(6-12)CX(17-22)HXH where X indicates any amino acid. This domain was first characterised in Drosophila Modifier of mdg4 proteins, Mod(mgd4), putative chromatin modulators involved in higher order chromatin domains. Mod(mdg4) proteins share a common N-terminal BTB/POZ domain, but differ in their C-terminal region, most containing C-terminal FLYWCH zinc finger motifs []. The FLYWCH domain in Mod(mdg4) proteins has a putative role in protein-protein interactions; for example, Mod(mdg4)-67.2 interacts with DNA-binding protein Su(Hw) via its FLYWCH domain. FLYWCH domains have been described in other proteins as well, including suppressor of killer of prune, Su(Kpn), which contains 4 terminal FLYWCH zinc finger motifs in a tandem array and a C-terminal glutathione SH-transferase (GST) domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 2RPR_A.

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=94.14  E-value=0.058  Score=40.47  Aligned_cols=30  Identities=33%  Similarity=0.627  Sum_probs=26.2

Q ss_pred             CCCcccccceeecCCCcEEEEEeccccCCCC
Q 025402          124 SGCPVKKKVQRCMEDKSFLVATYEGEHNHDV  154 (253)
Q Consensus       124 ~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~  154 (253)
                      .||+|+=.|-+.. |+...++.+..+|||+.
T Consensus        60 tgC~a~i~v~~~~-~~~w~v~~~~~~HNH~L   89 (91)
T PF03101_consen   60 TGCKARINVKRRK-DGKWRVTSFVLEHNHPL   89 (91)
T ss_pred             cCCCEEEEEEEcc-CCEEEEEECcCCcCCCC
Confidence            4799999998866 77788899999999987

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]

Probab=90.68  E-value=0.64  Score=43.34  Aligned_cols=43  Identities=21%  Similarity=0.349  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Q 025402            4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANR   46 (253)
Q Consensus         4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~   46 (253)
                      -|++.++++|.++..||-+|.+|+..+...|..|+.+|.++-.
T Consensus       163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~  205 (290)
T COG4026         163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEP  205 (290)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhcc
Confidence            3556777778888889999999999999999999999998854

>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization

Probab=87.92  E-value=3  Score=30.16  Aligned_cols=39  Identities=18%  Similarity=0.314  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402            3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI   41 (253)
Q Consensus         3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l   41 (253)
                      ..+++.|+.++..+..||..|..-+..+-..+..|..++
T Consensus        25 k~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~~e~   63 (64)
T PF00170_consen   25 KQYIEELEEKVEELESENEELKKELEQLKKEIQSLKSEN   63 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            367889999999999999999999999999999888764

; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....

>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []

Probab=84.92  E-value=6.1  Score=29.11  Aligned_cols=45  Identities=20%  Similarity=0.403  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402            2 MILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT   47 (253)
Q Consensus         2 ~~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~   47 (253)
                      +++++..+...+.-++.||+.|++-|+.+.++-..|-+ |.+++.+
T Consensus         5 lEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~-lYE~Vs~   49 (55)
T PF05377_consen    5 LENELPRIESSINTVKKENEEISESVEKIEENVKDLLS-LYEVVSN   49 (55)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHc
Confidence            46788888899999999999999999999888876654 4455444

In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].

>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function

Probab=84.00  E-value=4.5  Score=33.46  Aligned_cols=43  Identities=9%  Similarity=0.261  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHH
Q 025402            3 ILQMKLLQAKLEHVRKQNEN----LRHLVKAMNNQCNDLLARIHEAN   45 (253)
Q Consensus         3 ~~el~~l~~EL~rv~eEN~r----L~~mL~~~~~~y~~Lq~~l~~~~   45 (253)
                      +.||+..+.||.+.+.|...    =.++|..|.++|..|..||.+--
T Consensus        31 ~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~~Y~~l~~Hla~~a   77 (128)
T PF06295_consen   31 EQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQDYQKLYQHLAKGA   77 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677777777777766554    33488889999999999997653

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=83.19  E-value=7.9  Score=29.56  Aligned_cols=43  Identities=16%  Similarity=0.249  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc
Q 025402            5 QMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEANRT   47 (253)
Q Consensus         5 el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~~~   47 (253)
                      |++.|+++-....+||..|+.-..++...+.+.+.+|..++.+
T Consensus        26 e~eeLke~n~~L~~e~~~L~~en~~L~~e~~~~~~rl~~LL~k   68 (72)
T PF06005_consen   26 ENEELKEKNNELKEENEELKEENEQLKQERNAWQERLRSLLGK   68 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4444555544455557777777778888888888888877653

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma

Probab=82.11  E-value=4.5  Score=35.61  Aligned_cols=39  Identities=21%  Similarity=0.417  Sum_probs=35.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 025402            3 ILQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARI   41 (253)
Q Consensus         3 ~~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l   41 (253)
                      +.|-+.|+.||.+|.+|-..|+..|..-...+..|+..|
T Consensus        28 EeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL   66 (162)
T PF04201_consen   28 EEEREELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL   66 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            457789999999999999999999999988888888775

Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].

>PRK11677 hypothetical protein; Provisional

Probab=82.08  E-value=5.8  Score=33.68  Aligned_cols=41  Identities=17%  Similarity=0.280  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHH
Q 025402            3 ILQMKLLQAKLEHVRKQN----ENLRHLVKAMNNQCNDLLARIHE   43 (253)
Q Consensus         3 ~~el~~l~~EL~rv~eEN----~rL~~mL~~~~~~y~~Lq~~l~~   43 (253)
                      +.||+..+.||++.+.|.    -+-.++|+.|.++|..|..||..
T Consensus        35 e~eLe~~k~ele~YkqeV~~HFa~TA~Ll~~L~~~Y~~Ly~HlA~   79 (134)
T PRK11677         35 QYELEKNKAELEEYRQELVSHFARSAELLDTMAKDYRQLYQHMAK   79 (134)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356666666666655554    35678899999999999999965

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
2ayd_A	76	Crystal Structure Of The C-Terminal Wrky Domainof A		4e-17
1wj2_A	78	Solution Structure Of The C-Terminal Wrky Domain Of		1e-15

>pdb|2AYD|A Chain A, Crystal Structure Of The C-Terminal Wrky Domainof Atwrky1, An Sa-Induced And Partially Npr1-Dependent Transcription Factor Length = 76

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 92  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 151
           IV DG++WRKYGQK  K +P PR+Y+RCS  S GCPVKK V+R   D   L+ TYEG+H+
Sbjct: 13  IVNDGYRWRKYGQKSVKGSPYPRSYYRCS--SPGCPVKKHVERSSHDTKLLITTYEGKHD 70
Query: 152 HDV 154
           HD+
Sbjct: 71  HDM 73

>pdb|1WJ2|A Chain A, Solution Structure Of The C-Terminal Wrky Domain Of Atwrky4 Length = 78

Iteration: 1
 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 33/63 (52%), Positives = 47/63 (74%), Gaps = 2/63 (3%)
Query: 92  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 151
           ++ DG++WRKYGQKV K NP PR+Y++C+  + GC V+K V+R   D   +V TYEG+HN
Sbjct: 16  LLDDGYRWRKYGQKVVKGNPYPRSYYKCT--TPGCGVRKHVERAATDPKAVVTTYEGKHN 73
Query: 152 HDV 154
           HD+
Sbjct: 74  HDL 76

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	5e-34
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	2e-33

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A* Length = 78

 Score =  116 bits (293), Expect = 5e-34
 Identities = 35/80 (43%), Positives = 51/80 (63%), Gaps = 4/80 (5%)

Query: 75  AKQSRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQR 134
                  V+  S+    ++ DG++WRKYGQKV K NP PR+Y++C+  + GC V+K V+R
Sbjct: 1   GSSGSSGVQTTSEVD--LLDDGYRWRKYGQKVVKGNPYPRSYYKCT--TPGCGVRKHVER 56

Query: 135 CMEDKSFLVATYEGEHNHDV 154
              D   +V TYEG+HNHD+
Sbjct: 57  AATDPKAVVTTYEGKHNHDL 76

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana} Length = 76

 Score =  115 bits (289), Expect = 2e-33
 Identities = 41/77 (53%), Positives = 52/77 (67%), Gaps = 4/77 (5%)

Query: 78  SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCME 137
           SRI V   +     IV DG++WRKYGQK  K +P PR+Y+RCS  S GCPVKK V+R   
Sbjct: 1   SRIVVHTQTLFD--IVNDGYRWRKYGQKSVKGSPYPRSYYRCS--SPGCPVKKHVERSSH 56

Query: 138 DKSFLVATYEGEHNHDV 154
           D   L+ TYEG+H+HD+
Sbjct: 57  DTKLLITTYEGKHDHDM 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
2ayd_A	76	WRKY transcription factor 1; beta strands, zinc fi	100.0
1wj2_A	78	Probable WRKY transcription factor 4; DNA-binding	100.0
2zxx_A	79	Geminin; coiled-coil, cell cycle, coiled coil, DNA	90.89
2rpr_A	87	Flywch-type zinc finger-containing protein 1; flyw	88.5
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	87.35
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	81.23

>2ayd_A WRKY transcription factor 1; beta strands, zinc finger; 1.60A {Arabidopsis thaliana}

Probab=100.00  E-value=5.5e-36  Score=227.72  Aligned_cols=75  Identities=53%  Similarity=0.983  Sum_probs=70.1

Q ss_pred             ceeEEecccCCCcccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025402           78 SRIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC  156 (253)
Q Consensus        78 ~rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p~  156 (253)
                      +||.|++.++  ..+++|||+|||||||.|+|+++||+||||++.  ||+|+|+|||+++|+.+++|||+|+|||+.|.
T Consensus         1 ~r~~v~t~~~--~~~~~DGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   75 (76)
T 2ayd_A            1 SRIVVHTQTL--FDIVNDGYRWRKYGQKSVKGSPYPRSYYRCSSP--GCPVKKHVERSSHDTKLLITTYEGKHDHDMPP   75 (76)
T ss_dssp             CEEEEEEECS--SSCCCCSSCEEEEEEECCTTCSSCEEEEEECST--TCCCEEEEEECSSSTTEEEEEEESCCSSCCCC
T ss_pred             CeEEEEecCC--CCcCCCCchhhhCcccccCCCCCceeEeEcCCC--CCCceeeEEEECCCCCEEEEEEccCcCCCCCC
Confidence            5899999875  468899999999999999999999999999985  79999999999999999999999999999885

>1wj2_A Probable WRKY transcription factor 4; DNA-binding domain, zinc-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.79.1.1 PDB: 2lex_A*

Probab=100.00  E-value=3.7e-35  Score=224.17  Aligned_cols=74  Identities=47%  Similarity=0.903  Sum_probs=66.3

Q ss_pred             eeEEecccCCCcccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025402           79 RIFVKADSKDSSLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC  156 (253)
Q Consensus        79 rv~v~~~~~d~s~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p~  156 (253)
                      +|.|++.++  ..+++|||+|||||||.|+|+++||+||||++.  ||+|+|+|||+.+|+.+++|||+|+|||+.|.
T Consensus         5 ~~~~~t~s~--~~~~dDGy~WRKYGQK~ikgs~~PRsYYrCt~~--gC~a~K~Ver~~~d~~~~~~tY~G~H~H~~p~   78 (78)
T 1wj2_A            5 SSGVQTTSE--VDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   78 (78)
T ss_dssp             ---CCCCCC--CCCCCSSSCBCCCEEECCTTCSSCEEEEEEECS--SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             eEEEeccCC--CCcCCCCchhhhCcccccCCCcCeeEEeecCcC--CCCcEeeEEEEcCCCCEEEEEEeeEcCCCCCC
Confidence            677888875  368899999999999999999999999999985  79999999999999999999999999999884

>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}

Probab=90.89  E-value=0.25  Score=37.60  Aligned_cols=27  Identities=15%  Similarity=0.402  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 025402            4 LQMKLLQAKLEHVRKQNENLRHLVKAM   30 (253)
Q Consensus         4 ~el~~l~~EL~rv~eEN~rL~~mL~~~   30 (253)
                      .+++.+++|+.++++||+.|++|++.+
T Consensus        41 ~~ie~~~eEi~~LkeEN~~L~el~~~~   67 (79)
T 2zxx_A           41 KEIEQKDSEIARLRKENKDLAEVAEHV   67 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467888999999999999999999987

>2rpr_A Flywch-type zinc finger-containing protein 1; flywch domain, alternative splicing, DNA-binding, metal- binding, nucleus, metal binding protein; NMR {Homo sapiens}

Probab=88.50  E-value=0.34  Score=35.93  Aligned_cols=53  Identities=19%  Similarity=0.403  Sum_probs=34.4

Q ss_pred             cccccCCccccccCccccCCCCCCcceeecccCC-CCCcccccceeecCCCcEEEEEeccccCCCCC
Q 025402           90 SLIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMAS-SGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQ  155 (253)
Q Consensus        90 s~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~-~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p  155 (253)
                      ..++-|||...+--+      ...+.|.+|+... .+|+|+-....   +.    +...+.|||++.
T Consensus        21 ~~Lv~~Gy~Y~~~~~------~~~~~yWrC~~~~~~kCrARi~T~~---~~----~~~~~~HnH~p~   74 (87)
T 2rpr_A           21 RFLVHESFLYRKEKA------AGEKVYWMCRDQARLGCRSRAITQG---HR----IMVMRSHCHQPD   74 (87)
T ss_dssp             EEEEETTEEEEEEEE------CSSCEEEEEGGGTTSCCCCEEEEET---TE----EEECSCCSSCCC
T ss_pred             cEEEECCEEEEeeec------CCCcEEEEecCCCCCCCCEEEEEcC---CC----EECCCCcCCCCc
Confidence            457789998775321      1236899999753 46999855442   21    235688999754

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=87.35  E-value=2.5  Score=29.57  Aligned_cols=42  Identities=17%  Similarity=0.266  Sum_probs=36.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 025402            4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHEAN   45 (253)
Q Consensus         4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~~~   45 (253)
                      ..+..|+.++..+.+-|.+|.++|..--..-..|..+|-.+.
T Consensus         9 ~r~~~l~~~l~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A            9 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            456689999999999999999999999998899998887763

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=81.23  E-value=4.6  Score=28.68  Aligned_cols=40  Identities=20%  Similarity=0.294  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 025402            4 LQMKLLQAKLEHVRKQNENLRHLVKAMNNQCNDLLARIHE   43 (253)
Q Consensus         4 ~el~~l~~EL~rv~eEN~rL~~mL~~~~~~y~~Lq~~l~~   43 (253)
                      .+.+.|+.++..+..+|..|+.-+..+-.-...|..-|.+
T Consensus        23 ~~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll~e   62 (63)
T 1ci6_A           23 AEQEALTGECKELEKKNEALKERADSLAKEIQYLKDLIEE   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5678899999999999999999999988888888766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1wj2a_	71	g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cr	1e-24

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 71

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.4 bits (227), Expect = 1e-24
 Identities = 33/63 (52%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 92  IVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHN 151
           ++ DG++WRKYGQKV K NP PR+Y++C+    GC V+K V+R   D   +V TYEG+HN
Sbjct: 9   LLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHN 66

Query: 152 HDV 154
           HD+
Sbjct: 67  HDL 69

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1wj2a_	71	WRKY DNA-binding protein 4 {Thale cress (Arabidops	100.0

>d1wj2a_ g.79.1.1 (A:) WRKY DNA-binding protein 4 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: WRKY DNA-binding domain
superfamily: WRKY DNA-binding domain
family: WRKY DNA-binding domain
domain: WRKY DNA-binding protein 4
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=8.3e-36  Score=222.44  Aligned_cols=64  Identities=52%  Similarity=1.040  Sum_probs=61.2

Q ss_pred             ccccCCccccccCccccCCCCCCcceeecccCCCCCcccccceeecCCCcEEEEEeccccCCCCCC
Q 025402           91 LIVKDGHQWRKYGQKVTKDNPSPRAYFRCSMASSGCPVKKKVQRCMEDKSFLVATYEGEHNHDVQC  156 (253)
Q Consensus        91 ~~~~DGy~WRKYGQK~ikg~~~PRsYYRCs~~~~gC~akKqVQr~~~D~~~~~vtY~G~HnH~~p~  156 (253)
                      ++++|||+|||||||.|+|+++||+||||++.  ||+|+|+|||+++|+.+++|||+|+|||+.|+
T Consensus         8 ~~~dDGy~WRKYGQK~ikgs~~pRsYYrCt~~--~C~a~K~Vqr~~~d~~~~~vtY~G~H~h~~Ps   71 (71)
T d1wj2a_           8 DLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTP--GCGVRKHVERAATDPKAVVTTYEGKHNHDLPA   71 (71)
T ss_dssp             CCCCSSSCBCCCEEECCTTCSSCEEEEEEECS--SCEEEEEEEEETTTTSEEEEEEESCCSSCCCC
T ss_pred             ccCCCCcEecccCceeccCCCCceEEEEcccc--CCCCcceEEEEcCCCCEEEEEEeeEeCCCCCC
Confidence            57899999999999999999999999999985  79999999999999999999999999999884