Citrus Sinensis ID: 025406

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MIIIISIFFLLDTSLPLTIATTMAFHFFIIIPHEACLLWQRNPHSPVALKLQTCSLLPKRKHFYLQLLQKIQLFPTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKILA
Secondary Structure (PSIPRED)
cEEEEEEHHHHcccccccccccccccHHccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccEEEEEEcccEEEEEEcccccccHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHccccccccEEEEEEcccccEEEcccccHHHHHHHccEEEEEccHHHHcccHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEHHHHHHHccccHHHHHHHHcccEEcccccEEEEEcccccccccccccccccccccccccccccccccccccccEEEccccHHHHHHHHHHcccccccccHHcccccccccccccccccccccEEEEEEccccccEEEEEHHHHccHHHHHHHHHHHHcccEEcccccccccccccccccHHHHHHccccccEEEEEEcccccEEEEccccHHHHHHHHHHHEEEcccHHHcccHHHHHHcccccccc
Coil and Loop (DISEMBL)
MIIIISIFFLldtslpltiaTTMAFHFFIIIPHEacllwqrnphspvalklqtcsllpkrKHFYLQLLQKIQLFPtalrkvvgwppirsfrknlagasasklpasespndvpsktvdekpahepgrknpfvkinmdgvpigrkvdlnayDSYEKLSAAVDELFRGLLAAqrdssaggivnkqEEEKAITGvldgsgeytlvyednegdrmlvgdvpwhmFVSTVTRLRVLKSSEVSalsrekfgnsrqdkila
Flexible Loop (DISEMBL)
MIIIISIFFLLDTSLPLTIATTMAFHFFIIIPHEACLLWQRNPHSPVALKLQTCSLLPKRKHFYLQLLQKIQLFPTALRKVVGWPPIRSFRKNLAGAsasklpasespndvpsktvdekpahepgrknpfvkinmdgvPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAqrdssaggivnkqeeekaitgvldgsgeYTLVYEDNEGDRMLVGDVPWHMFVSTVtrlrvlkssevsalsrekfgnsrqdkila
Low Complexity Region (SEG)
MIIIISIFFLLDTSLPLTIATTMAFHFFIIIPHEACLLWQRNPHSPVALKLQTCSLLPKRKHFYLQLLQKIQLFPTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKILA
Disordered region (IsUnstruct)
*IIIISIFFLLDTSLPLTIATTMAFHFFIIIPHEACLLWQRNPHSPVALKLQTCSLLPKRKHFYLQLLQKIQLFPTALRKVVGWPPIRSFR**************************************FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQ****************AITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVL***********************
Disordered Region (DISOPRED)
MIIIISIFFLLDTSLPLTIATTMA***********************************************************WPPIR***************************************NPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAA**********************LDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVL***********************
Disordered Region (DISEMBL)
MIIIISIFFLLDTSLPLTIATTMAFHFFIIIPHEACLLWQRNPHSPVALKLQTCSLLPKRKHFYLQLLQKIQLFPTALRKVVGWPPIRSFRKNLAG***************************PGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSR*************
Disordered Region (DISPRO)
MIIIISIFFLLDTSLPLTIATTMAFHFFIIIPHEACLLWQR*********************************PTALRKVVGWPPIRSFRKNLAGA****************************RKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRD************EKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKF**********
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIIIISIFFLLDTSLPLTIATTMAFHFFIIIPHEACLLWQRNPHSPVALKLQTCSLLPKRKHFYLQLLQKIQLFPTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKILA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q8LAL2	269	Auxin-responsive protein	yes	no	0.667	0.628	0.634	8e-54
Q6H543	300	Auxin-responsive protein	yes	no	0.584	0.493	0.598	2e-49
O24408	267	Auxin-responsive protein	no	no	0.664	0.629	0.609	3e-49
Q5W670	327	Auxin-responsive protein	no	no	0.604	0.467	0.584	1e-44
Q8LQ74	335	Auxin-responsive protein	no	no	0.581	0.438	0.578	6e-44
P0C127	228	Auxin-responsive protein	no	no	0.588	0.653	0.569	3e-41
Q9LG86	238	Auxin-responsive protein	no	no	0.628	0.668	0.539	3e-36
Q38829	246	Auxin-responsive protein	no	no	0.600	0.617	0.433	4e-29
Q38831	247	Auxin-responsive protein	no	no	0.664	0.680	0.417	5e-29
Q9ZSY8	305	Auxin-responsive protein	no	no	0.616	0.511	0.415	6e-28

>sp|Q8LAL2|IAA26_ARATH Auxin-responsive protein IAA26 OS=Arabidopsis thaliana GN=IAA26 PE=1 SV=2

 Score =  210 bits (534), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 113/178 (63%), Positives = 134/178 (75%), Gaps = 9/178 (5%)

Query: 76  TALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINM 135
           TA   VVGWPP+RSFRKNLA  S+SKL    S     +K+ D +   E  ++  FVKINM
Sbjct: 99  TAPGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINM 158

Query: 136 DGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGS 195
           DGVPIGRKVDLNAY+SYE+LS  VD+LFRGLLAAQRD S G     Q EEK I G+LDG 
Sbjct: 159 DGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDG-----QGEEKPIIGLLDGK 213

Query: 196 GEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV-SALSREKFGNSRQDKIL 252
           GE+TL YEDNEGD+MLVGDVPW MFVS+V RLRV+KSSE+ SAL+   FG S+Q+K++
Sbjct: 214 GEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEISSALT---FGCSKQEKMM 268

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6H543|IAA7_ORYSJ Auxin-responsive protein IAA7 OS=Oryza sativa subsp. japonica GN=IAA7 PE=2 SV=1

 Score =  195 bits (496), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 94/157 (59%), Positives = 121/157 (77%), Gaps = 9/157 (5%)

Query: 81  VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPI 140
           VVGWPP+R+FR+NLA +S + L          ++ +         ++ PF+KINMDGVPI
Sbjct: 139 VVGWPPVRTFRRNLATSSKASLELQNGKKAAKAEEI---------KRAPFIKINMDGVPI 189

Query: 141 GRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTL 200
           GRK+DLNA+DSYEKLS AVD+LFRGLLAAQRD    G  + Q+E+ AI+G+LDG+GEYTL
Sbjct: 190 GRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTL 249

Query: 201 VYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 237
           VYED EGD++LVGDVPW MFVS+V RLRVLK+S++S+
Sbjct: 250 VYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSS 286

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O24408|IAA18_ARATH Auxin-responsive protein IAA18 OS=Arabidopsis thaliana GN=IAA18 PE=1 SV=2

 Score =  195 bits (495), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 111/182 (60%), Positives = 134/182 (73%), Gaps = 14/182 (7%)

Query: 76  TALRKVVGWPPIRSFRKNLAGASASKLPA-SESPNDVPSKTVDEKPA---HEPGRKNP-F 130
           TA   VVGWPP+RSFRKNLA  S+SKL   S + N V  K      A    EP R+   F
Sbjct: 92  TAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMF 151

Query: 131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITG 190
           VKINM GVPIGRKVDL+A++SYE+LS  VD+LFRGLLAAQRD       +  E+EK ITG
Sbjct: 152 VKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRD-----FPSSIEDEKPITG 206

Query: 191 VLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV-SALSREKFGNSRQD 249
           +LDG+GEYTL YEDNEGD+MLVGDVPW MFVS+V RLRV+K+SE+ SAL+   +GN +Q+
Sbjct: 207 LLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSEISSALT---YGNGKQE 263

Query: 250 KI 251
           K+
Sbjct: 264 KM 265

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5W670|IAA18_ORYSJ Auxin-responsive protein IAA18 OS=Oryza sativa subsp. japonica GN=IAA18 PE=2 SV=1

 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 93/159 (58%), Positives = 115/159 (72%), Gaps = 6/159 (3%)

Query: 77  ALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMD 136
           A+  VVGWPPIRSFR+NL   S+ K  + E  ND      D+K A    +K P VKINMD
Sbjct: 164 AIPPVVGWPPIRSFRRNLTNGSSFKQ-SPERQND----EADDK-AKPICKKRPLVKINMD 217

Query: 137 GVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSG 196
           G+PIGRKVDL  YDSY+KLS+AV+ELFRG L AQ+D S      +  E+K  +G+LDG+G
Sbjct: 218 GIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTG 277

Query: 197 EYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV 235
            YTLVYEDN+GDRML GD+PW +FVSTV RLRV++ SE+
Sbjct: 278 VYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSEL 316

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8LQ74|IAA6_ORYSJ Auxin-responsive protein IAA6 OS=Oryza sativa subsp. japonica GN=IAA6 PE=2 SV=1

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 92/159 (57%), Positives = 116/159 (72%), Gaps = 12/159 (7%)

Query: 81  VVGWPPIRSFRKNLAGASASK---LPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDG 137
           VVGWPPIRSFR+NLA +S+SK    P +++ N   + T          +KNP VKINMDG
Sbjct: 176 VVGWPPIRSFRRNLASSSSSKHSPEPQNDNANAKVTLTC---------KKNPLVKINMDG 226

Query: 138 VPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGE 197
           +PIGRK+DL AY+SY+ LS+AV +LF G L AQ+D +   I  +  ++K    +LDGSGE
Sbjct: 227 IPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSGE 286

Query: 198 YTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVS 236
           YTLVYED+EGDRMLVGDVPW +FVST  RLRVL+SSE+S
Sbjct: 287 YTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELS 325

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P0C127|IAA16_ORYSJ Auxin-responsive protein IAA16 OS=Oryza sativa subsp. japonica GN=IAA16 PE=2 SV=1

 Score =  168 bits (426), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/165 (56%), Positives = 114/165 (69%), Gaps = 16/165 (9%)

Query: 81  VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPI 140
           VVGWPP+RSFR+NLA +S+S  P        P    D   A   G+   FVK+NMDGVPI
Sbjct: 58  VVGWPPVRSFRRNLASSSSSSKP--------PRGGRDAAAAATGGKVARFVKVNMDGVPI 109

Query: 141 GRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQE-------EEKAITGVLD 193
           GRKVDL A+  Y +LSAAVD LFRGLLAAQRD +                EE+AI G+LD
Sbjct: 110 GRKVDLAAHGGYGELSAAVDRLFRGLLAAQRDPTMATAAAAAAAGESCTGEEEAIAGLLD 169

Query: 194 -GSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 237
            GSGEYTLVYED+EGD+MLVGDVPW+MF++   RLRVL+SS+++A
Sbjct: 170 GGSGEYTLVYEDDEGDQMLVGDVPWNMFIAAARRLRVLRSSDLNA 214

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LG86|IAA2_ORYSJ Auxin-responsive protein IAA2 OS=Oryza sativa subsp. japonica GN=IAA2 PE=2 SV=1

 Score =  152 bits (383), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 89/165 (53%), Positives = 107/165 (64%), Gaps = 6/165 (3%)

Query: 84  WPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRK 143
           WPP+RSFR+NLA +S+S    +  P     +  D+        K  FVKINMDGVPIGRK
Sbjct: 74  WPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMDGVPIGRK 133

Query: 144 VDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYE 203
           VDL AY  Y +LSAAVD+LFRGLLAAQ            E + A  G + G GEYTLVYE
Sbjct: 134 VDLAAYGGYAQLSAAVDKLFRGLLAAQS------AAADGEADAAAAGEMVGGGEYTLVYE 187

Query: 204 DNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQ 248
           D+EGDRMLVGDVPW MF++T  RLRVLKSS++   S  +   SR+
Sbjct: 188 DDEGDRMLVGDVPWQMFIATAKRLRVLKSSDLPPPSLMRAAGSRK 232

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38829|IAA11_ARATH Auxin-responsive protein IAA11 OS=Arabidopsis thaliana GN=IAA11 PE=1 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 69/159 (43%), Positives = 97/159 (61%), Gaps = 7/159 (4%)

Query: 80  KVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP-FVKINMDGV 138
           +VVGWPPIR++R N +  + +K  A+E PN   S+ V++  +     +N  FVK+ MDG+
Sbjct: 88  QVVGWPPIRTYRMN-SMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGI 146

Query: 139 PIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEY 198
           PIGRK+DLNA+  YE LS  ++E+F       R     G +     E  +  + DGS   
Sbjct: 147 PIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHM-----ETPVKILPDGSSGL 201

Query: 199 TLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 237
            L YED EGD MLVGDVPW MF+ +V RLR++K+SE + 
Sbjct: 202 VLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEATG 240

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38831|IAA13_ARATH Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2

 Score =  128 bits (321), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 76/182 (41%), Positives = 103/182 (56%), Gaps = 14/182 (7%)

Query: 75  PTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP----- 129
           P +  +VVGWPPI S R N    + +   A E       K  D++P     + N      
Sbjct: 71  PRSSSQVVGWPPIGSHRMNSLVNNQATKSAREEEEAGKKKVKDDEPKDVTKKVNGKVQVG 130

Query: 130 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAIT 189
           F+K+NMDGV IGRKVDLNA+ SYE L+  ++++F          +  G V    +     
Sbjct: 131 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFF--------RTNPGTVGLTSQFTKPL 182

Query: 190 GVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL-SREKFGNSRQ 248
            +LDGS E+ L YED EGD MLVGDVPW MF+++V RLRV+K+SE + L +R +  N RQ
Sbjct: 183 RLLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNERQ 242

Query: 249 DK 250
            K
Sbjct: 243 RK 244

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZSY8|IAA27_ARATH Auxin-responsive protein IAA27 OS=Arabidopsis thaliana GN=IAA27 PE=1 SV=1

 Score =  124 bits (311), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 10/166 (6%)

Query: 75  PTALRKVVGWPPIRSFRKNLAGASASKLPASESPND-VPSKTVDEKPAHEPGRKNPFVKI 133
           P +  +VVGWPPIRSFRKN   +S S+ P + S  +   +K+  E+P         +VK+
Sbjct: 138 PASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCL-------YVKV 190

Query: 134 NMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLD 193
           +M+G P  RK+DL  Y SY +LS+A++++F      Q   S GG       E  +T +L 
Sbjct: 191 SMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQF-GSHGGCGRDGLNESRLTDLLR 249

Query: 194 GSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 239
           GS EY + YED + D MLVGDVPW MF+ +  +LR++KSSE   L+
Sbjct: 250 GS-EYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLA 294

Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations. Repression is thought to result from the interaction with auxin response factors (ARFs), proteins that bind to the auxin-responsive promoter element (AuxRE). Formation of heterodimers with ARF proteins may alter their ability to modulate early auxin response genes expression.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
359482888	364	PREDICTED: auxin-responsive protein IAA2	0.664	0.461	0.772	3e-67
297743183	364	unnamed protein product [Vitis vinifera]	0.664	0.461	0.772	5e-67
356556539	320	PREDICTED: auxin-responsive protein IAA2	0.679	0.537	0.740	1e-62
302398571	325	ARF domain class transcription factor [M	0.640	0.498	0.766	1e-61
147798046	559	hypothetical protein VITISV_004904 [Viti	0.691	0.313	0.720	4e-61
255549816	320	Auxin-responsive protein IAA6, putative	0.640	0.506	0.783	1e-60
224070983	338	predicted protein [Populus trichocarpa]	0.628	0.470	0.730	2e-60
449466107	326	PREDICTED: auxin-responsive protein IAA2	0.679	0.527	0.715	5e-60
356550493	346	PREDICTED: auxin-responsive protein IAA2	0.667	0.488	0.699	2e-59
365818553	287	IAA26 [Solanum lycopersicum]	0.841	0.742	0.623	3e-58

>gi|359482888|ref|XP_002283588.2| PREDICTED: auxin-responsive protein IAA26-like [Vitis vinifera]

 Score =  260 bits (665), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 150/176 (85%), Gaps = 8/176 (4%)

Query: 75  PTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKIN 134
           PTA   VVGWPPIRSFRKNLA +S+SK PA+ES + VP+K   EKP  E G+K  FVKIN
Sbjct: 189 PTA---VVGWPPIRSFRKNLASSSSSK-PANESQDVVPNKIASEKPV-EVGKKGLFVKIN 243

Query: 135 MDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDG 194
           MDGVPIGRKVDL AYDSYEKLS+AVDELFRGLLAAQRDSSAGGI  K EEEK ITG+LDG
Sbjct: 244 MDGVPIGRKVDLTAYDSYEKLSSAVDELFRGLLAAQRDSSAGGIQTKHEEEKTITGLLDG 303

Query: 195 SGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDK 250
           SGEYTLVYEDNEGDR+LVGDVPWHMFV+TV RLRVLKSSE+SAL     G+S+Q+K
Sbjct: 304 SGEYTLVYEDNEGDRVLVGDVPWHMFVNTVKRLRVLKSSELSALC---LGSSKQEK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743183|emb|CBI36050.3| unnamed protein product [Vitis vinifera]

 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 136/176 (77%), Positives = 150/176 (85%), Gaps = 8/176 (4%)

Query: 75  PTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKIN 134
           PTA   VVGWPPIRSFRKNLA +S+SK PA+ES + VP+K   EKP  E G+K  FVKIN
Sbjct: 189 PTA---VVGWPPIRSFRKNLASSSSSK-PANESQDVVPNKIASEKPV-EVGKKGLFVKIN 243

Query: 135 MDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDG 194
           MDGVPIGRKVDL AYDSYEKLS+AVDELFRGLLAAQRDSSAGGI  K EEEK ITG+LDG
Sbjct: 244 MDGVPIGRKVDLTAYDSYEKLSSAVDELFRGLLAAQRDSSAGGIQTKHEEEKTITGLLDG 303

Query: 195 SGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDK 250
           SGEYTLVYEDNEGDR+LVGDVPWHMFV+TV RLRVLKSSE+SAL     G+S+Q+K
Sbjct: 304 SGEYTLVYEDNEGDRVLVGDVPWHMFVNTVKRLRVLKSSELSALC---LGSSKQEK 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556539|ref|XP_003546582.1| PREDICTED: auxin-responsive protein IAA26-like [Glycine max]

 Score =  245 bits (626), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 131/177 (74%), Positives = 143/177 (80%), Gaps = 5/177 (2%)

Query: 76  TALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHE-PGRKNPFVKIN 134
           TA   VVGWPPIRSFRKNLA +S++  P  ES  +  +K   +KP       K  FVKIN
Sbjct: 141 TAPAPVVGWPPIRSFRKNLASSSSASKPPPESQAEQHNKVAGKKPVDNYANNKGLFVKIN 200

Query: 135 MDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDG 194
           MDGVPIGRKVDLNAYDSYE LS+AVDELFRGLLAAQRDSSAGG+ NKQEEEKAITG+LDG
Sbjct: 201 MDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAITGLLDG 260

Query: 195 SGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKI 251
           SGEYTLVYEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSE+SA +      S+QDKI
Sbjct: 261 SGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTL----GSKQDKI 313

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398571|gb|ADL36580.1| ARF domain class transcription factor [Malus x domestica]

 Score =  242 bits (617), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 125/163 (76%), Positives = 131/163 (80%), Gaps = 1/163 (0%)

Query: 76  TALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINM 135
           TA   VVGWPPIRSFRKNLA    S  PA ES N V  K  + K     G K  FVKINM
Sbjct: 153 TAPAPVVGWPPIRSFRKNLASKKGSSKPAVESENVVQIKDPNGKSVETSG-KGLFVKINM 211

Query: 136 DGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGS 195
           DGVPIGRKVDL AYDSY+KLS+AVDELFRGLLAAQR+S  GG  NKQEEEK ITG+LDGS
Sbjct: 212 DGVPIGRKVDLGAYDSYQKLSSAVDELFRGLLAAQRESCNGGTKNKQEEEKEITGLLDGS 271

Query: 196 GEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSAL 238
           GEYTLVYEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSE+SAL
Sbjct: 272 GEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAL 314

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147798046|emb|CAN73899.1| hypothetical protein VITISV_004904 [Vitis vinifera]

 Score =  240 bits (613), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 129/179 (72%), Positives = 142/179 (79%), Gaps = 4/179 (2%)

Query: 65  LQLLQKIQLFPTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEP 124
           LQ  +K    P +    V  P     RKNLA +S+SK PA+ES + VP+K   EKP  E 
Sbjct: 330 LQNTEKKAFSPASANTAV--PNSSQKRKNLASSSSSK-PANESQDVVPNKIASEKPV-EV 385

Query: 125 GRKNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEE 184
           G+K  FVKINMDGVPIGRKVDL AYDSYEKLS+AVDELFRGLLAAQRDSSAGGI  KQEE
Sbjct: 386 GKKGLFVKINMDGVPIGRKVDLTAYDSYEKLSSAVDELFRGLLAAQRDSSAGGIQTKQEE 445

Query: 185 EKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKF 243
           EK ITG+LDGSGEYTLVYEDNEGDR+LVGDVPWHMFV+TV RLRVLKSSE+SAL RE F
Sbjct: 446 EKTITGLLDGSGEYTLVYEDNEGDRVLVGDVPWHMFVNTVKRLRVLKSSELSALCREFF 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549816|ref|XP_002515959.1| Auxin-responsive protein IAA6, putative [Ricinus communis] gi|223544864|gb|EEF46379.1| Auxin-responsive protein IAA6, putative [Ricinus communis]

 Score =  238 bits (608), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 130/166 (78%), Positives = 138/166 (83%), Gaps = 4/166 (2%)

Query: 76  TALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINM 135
           TA   VVGWPPIRSFRKNLA +++SK  A    N+ P+K V  +   E  +K  FVKINM
Sbjct: 159 TAPGPVVGWPPIRSFRKNLASSNSSKSAADSQ-NESPNKKVASENPVETCKKGLFVKINM 217

Query: 136 DGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGS 195
           DGVPIGRKVDL AYDSYEKLS AVDELFRGLLAAQRDSSAG    KQEEEKAITGVLDGS
Sbjct: 218 DGVPIGRKVDLQAYDSYEKLSIAVDELFRGLLAAQRDSSAG---TKQEEEKAITGVLDGS 274

Query: 196 GEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSRE 241
           GEYTLVYEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSEVSALSR+
Sbjct: 275 GEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSEVSALSRK 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070983|ref|XP_002303315.1| predicted protein [Populus trichocarpa] gi|222840747|gb|EEE78294.1| predicted protein [Populus trichocarpa]

 Score =  238 bits (607), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 125/171 (73%), Positives = 135/171 (78%), Gaps = 12/171 (7%)

Query: 81  VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPI 140
           VVGWPPIRSFRKNLA +S S        N  P+     KPA    +K  FVKINM+GVPI
Sbjct: 178 VVGWPPIRSFRKNLATSSGS--------NSKPTFESQNKPAGT-CKKGLFVKINMEGVPI 228

Query: 141 GRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTL 200
           GRKVDL AYDSYEKLS AVDELFRGLLAAQRDSS  GI+NKQE EKAI GVLDGSGEY L
Sbjct: 229 GRKVDLKAYDSYEKLSTAVDELFRGLLAAQRDSSCNGIMNKQEGEKAIMGVLDGSGEYKL 288

Query: 201 VYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKI 251
           VYEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSEVSAL+    G+S+ +K+
Sbjct: 289 VYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSEVSALN---LGSSKHEKV 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449466107|ref|XP_004150768.1| PREDICTED: auxin-responsive protein IAA26-like [Cucumis sativus] gi|449490048|ref|XP_004158493.1| PREDICTED: auxin-responsive protein IAA26-like [Cucumis sativus]

 Score =  236 bits (603), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 143/179 (79%), Gaps = 7/179 (3%)

Query: 76  TALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSK--TVDEKPAHEPGRKNPFVKI 133
           TA   VVGWPPIRS R+N+A +S SK PASES +  PSK     EKP  + G K  FVKI
Sbjct: 147 TAPAPVVGWPPIRSSRRNIASSSFSK-PASESSDASPSKLPGPGEKPV-DVGGKGLFVKI 204

Query: 134 NMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLD 193
           NMDGVPIGRK+DLNAYDSYEKLS  VDELFRGLLAAQRDSS GG++NKQEEEK ITG+LD
Sbjct: 205 NMDGVPIGRKIDLNAYDSYEKLSFGVDELFRGLLAAQRDSSGGGVLNKQEEEKPITGLLD 264

Query: 194 GSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 252
           GSGEYTLVYEDNEGDR+LVGDVPW MFVST  RLRVLKSSE+ +LS    G S+  K++
Sbjct: 265 GSGEYTLVYEDNEGDRVLVGDVPWQMFVSTAKRLRVLKSSELPSLS---LGCSKSQKMV 320

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550493|ref|XP_003543621.1| PREDICTED: auxin-responsive protein IAA26-like [Glycine max]

 Score =  234 bits (598), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/183 (69%), Positives = 142/183 (77%), Gaps = 14/183 (7%)

Query: 76  TALRKVVGWPPIRSFRKNLAGASASKL-------PASESPNDVPSKTVDEKPAHEPGRKN 128
           TA   VVGWPPIRSFRKNL+ +S++          A +  N V  K   +  A+  G   
Sbjct: 164 TAPAPVVGWPPIRSFRKNLSSSSSASKPPPPPESQAEQQHNKVAGKKPVDNYANNKGL-- 221

Query: 129 PFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAI 188
            FVKINMDGVPIGRKVDLNAYDSYE LS+AVDELFRGLLAAQRDSSAGG+ NKQEEEKAI
Sbjct: 222 -FVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQEEEKAI 280

Query: 189 TGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQ 248
           TG+LDGSGE+TLVYEDNEGDRMLVGDVPWHMFVSTV RLRVLKSSE+SA +      S+Q
Sbjct: 281 TGLLDGSGEFTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSAFTL----GSKQ 336

Query: 249 DKI 251
           DKI
Sbjct: 337 DKI 339

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|365818553|gb|AEX00365.1| IAA26 [Solanum lycopersicum]

 Score =  230 bits (587), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 136/218 (62%), Positives = 157/218 (72%), Gaps = 5/218 (2%)

Query: 25  FHFFIIIPHEACLLWQRNPHSPVALKLQTCSLLPKRKHF-YLQLLQKIQLFPTALRKVVG 83
           F  F+ +   A    QR   S V  K        K+K F     +Q      TA   VVG
Sbjct: 67  FSSFLQLQSTAQKQSQRVQES-VCTKTADLQSTEKKKAFSQTATVQNSAQKRTAPAPVVG 125

Query: 84  WPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRK 143
           WPPIRSFRKNLA +S+S   ASE+ N VP+K+ ++KP  E  +K  FVKINMDG+PIGRK
Sbjct: 126 WPPIRSFRKNLA-SSSSVKSASETQNVVPNKSANKKPM-EICQKGLFVKINMDGIPIGRK 183

Query: 144 VDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQE-EEKAITGVLDGSGEYTLVY 202
           VDL AYDSY KLS+AVD+LFRGL+AAQ DSSAGG   K+E EEKAI+G+LDGSGEYTLVY
Sbjct: 184 VDLKAYDSYHKLSSAVDQLFRGLVAAQNDSSAGGNNEKKEDEEKAISGLLDGSGEYTLVY 243

Query: 203 EDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSR 240
           EDNEGDRMLVGDVPWHMFVSTV RLRVLKSSE+S L+R
Sbjct: 244 EDNEGDRMLVGDVPWHMFVSTVKRLRVLKSSELSTLTR 281

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2088324	269	PAP1 "phytochrome-associated p	0.671	0.631	0.632	2.2e-50
TAIR|locus:2195820	267	IAA18 "indole-3-acetic acid in	0.667	0.632	0.607	1.1e-46
UNIPROTKB|Q6H543	300	IAA7 "Auxin-responsive protein	0.584	0.493	0.617	1.3e-45
UNIPROTKB|Q5W670	327	IAA18 "Auxin-responsive protei	0.604	0.467	0.584	4.5e-43
UNIPROTKB|Q8LQ74	335	IAA6 "Auxin-responsive protein	0.608	0.459	0.587	1.5e-42
UNIPROTKB|Q9LG86	238	IAA2 "Auxin-responsive protein	0.656	0.697	0.552	2.2e-41
TAIR|locus:2180557	175	IAA28 "AT5G25890" [Arabidopsis	0.205	0.297	0.653	1.4e-29
TAIR|locus:2051154	247	IAA13 "auxin-induced protein 1	0.660	0.676	0.431	1.6e-29
TAIR|locus:2139890	302	IAA11 "indole-3-acetic acid in	0.596	0.5	0.436	1.2e-28
TAIR|locus:2119976	305	PAP2 "AT4G29080" [Arabidopsis	0.616	0.511	0.415	1e-27

TAIR|locus:2088324 PAP1 "phytochrome-associated protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 524 (189.5 bits), Expect = 2.2e-50, P = 2.2e-50
 Identities = 112/177 (63%), Positives = 132/177 (74%)

Query:    76 TALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINM 135
             TA   VVGWPP+RSFRKNLA  S+SKL    S     +K+ D +   E  ++  FVKINM
Sbjct:    99 TAPGPVVGWPPVRSFRKNLASTSSSKLGNESSHGGQINKSDDGEKQVETKKEGMFVKINM 158

Query:   136 DGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGS 195
             DGVPIGRKVDLNAY+SYE+LS  VD+LFRGLLAAQRD S G     Q EEK I G+LDG 
Sbjct:   159 DGVPIGRKVDLNAYNSYEQLSFVVDKLFRGLLAAQRDISDG-----QGEEKPIIGLLDGK 213

Query:   196 GEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDKIL 252
             GE+TL YEDNEGD+MLVGDVPW MFVS+V RLRV+KSSE+S  S   FG S+Q+K++
Sbjct:   214 GEFTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKSSEIS--SALTFGCSKQEKMM 268

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=TAS

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

TAIR|locus:2195820 IAA18 "indole-3-acetic acid inducible 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 489 (177.2 bits), Expect = 1.1e-46, P = 1.1e-46
 Identities = 110/181 (60%), Positives = 132/181 (72%)

Query:    76 TALRKVVGWPPIRSFRKNLAGASASKLPA-SESPNDVPSKTVDEKPAH---EPGRKNP-F 130
             TA   VVGWPP+RSFRKNLA  S+SKL   S + N V  K      A    EP R+   F
Sbjct:    92 TAPGPVVGWPPVRSFRKNLASGSSSKLGNDSTTSNGVTLKNQKCDAAAKTTEPKRQGGMF 151

Query:   131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITG 190
             VKINM GVPIGRKVDL+A++SYE+LS  VD+LFRGLLAAQRD       +  E+EK ITG
Sbjct:   152 VKINMYGVPIGRKVDLSAHNSYEQLSFTVDKLFRGLLAAQRD-----FPSSIEDEKPITG 206

Query:   191 VLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQDK 250
             +LDG+GEYTL YEDNEGD+MLVGDVPW MFVS+V RLRV+K+SE+S  S   +GN +Q+K
Sbjct:   207 LLDGNGEYTLTYEDNEGDKMLVGDVPWQMFVSSVKRLRVIKTSEIS--SALTYGNGKQEK 264

Query:   251 I 251
             +
Sbjct:   265 M 265

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0048527 "lateral root development" evidence=RCA

UNIPROTKB|Q6H543 IAA7 "Auxin-responsive protein IAA7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 97/157 (61%), Positives = 123/157 (78%)

Query:    81 VVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPI 140
             VVGWPP+R+FR+NLA +S + L   E  N   +   +E       ++ PF+KINMDGVPI
Sbjct:   139 VVGWPPVRTFRRNLATSSKASL---ELQNGKKAAKAEEI------KRAPFIKINMDGVPI 189

Query:   141 GRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTL 200
             GRK+DLNA+DSYEKLS AVD+LFRGLLAAQRD    G  + Q+E+ AI+G+LDG+GEYTL
Sbjct:   190 GRKIDLNAFDSYEKLSLAVDKLFRGLLAAQRDPLTAGAKDCQQEDVAISGLLDGTGEYTL 249

Query:   201 VYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSA 237
             VYED EGD++LVGDVPW MFVS+V RLRVLK+S++S+
Sbjct:   250 VYEDYEGDKVLVGDVPWGMFVSSVKRLRVLKTSDLSS 286

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q5W670 IAA18 "Auxin-responsive protein IAA18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 455 (165.2 bits), Expect = 4.5e-43, P = 4.5e-43
 Identities = 93/159 (58%), Positives = 115/159 (72%)

Query:    77 ALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMD 136
             A+  VVGWPPIRSFR+NL   S+ K  + E  ND      D+K A    +K P VKINMD
Sbjct:   164 AIPPVVGWPPIRSFRRNLTNGSSFK-QSPERQND----EADDK-AKPICKKRPLVKINMD 217

Query:   137 GVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSG 196
             G+PIGRKVDL  YDSY+KLS+AV+ELFRG L AQ+D S      +  E+K  +G+LDG+G
Sbjct:   218 GIPIGRKVDLQIYDSYQKLSSAVEELFRGFLEAQKDLSCAESGEQGAEDKIFSGLLDGTG 277

Query:   197 EYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV 235
              YTLVYEDN+GDRML GD+PW +FVSTV RLRV++ SE+
Sbjct:   278 VYTLVYEDNDGDRMLAGDIPWKVFVSTVKRLRVMRRSEL 316

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q8LQ74 IAA6 "Auxin-responsive protein IAA6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 94/160 (58%), Positives = 116/160 (72%)

Query:    77 ALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMD 136
             A   VVGWPPIRSFR+NLA +S+SK  + E  ND  +  V         +KNP VKINMD
Sbjct:   172 AAAPVVGWPPIRSFRRNLASSSSSK-HSPEPQNDNANAKVTLTC-----KKNPLVKINMD 225

Query:   137 GVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSG 196
             G+PIGRK+DL AY+SY+ LS+AV +LF G L AQ+D +   I  +  ++K    +LDGSG
Sbjct:   226 GIPIGRKIDLAAYNSYDGLSSAVKQLFHGFLQAQKDQTNAQIAQQGADDKIFYQLLDGSG 285

Query:   197 EYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVS 236
             EYTLVYED+EGDRMLVGDVPW +FVST  RLRVL+SSE+S
Sbjct:   286 EYTLVYEDSEGDRMLVGDVPWKVFVSTAKRLRVLRSSELS 325

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IC

UNIPROTKB|Q9LG86 IAA2 "Auxin-responsive protein IAA2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 439 (159.6 bits), Expect = 2.2e-41, P = 2.2e-41
 Identities = 95/172 (55%), Positives = 115/172 (66%)

Query:    77 ALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMD 136
             A   VVGWPP+RSFR+NLA +S+S    +  P     +  D+        K  FVKINMD
Sbjct:    67 AAAPVVGWPPVRSFRRNLASSSSSSSKQAPPPPSSSPQNGDKASKDGGAEKGMFVKINMD 126

Query:   137 GVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSG 196
             GVPIGRKVDL AY  Y +LSAAVD+LFRGLLAAQ  ++A G     E + A  G + G G
Sbjct:   127 GVPIGRKVDLAAYGGYAQLSAAVDKLFRGLLAAQ-SAAADG-----EADAAAAGEMVGGG 180

Query:   197 EYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFGNSRQ 248
             EYTLVYED+EGDRMLVGDVPW MF++T  RLRVLKSS++   S  +   SR+
Sbjct:   181 EYTLVYEDDEGDRMLVGDVPWQMFIATAKRLRVLKSSDLPPPSLMRAAGSRK 232

GO:0009733 "response to auxin stimulus" evidence=IC

TAIR|locus:2180557 IAA28 "AT5G25890" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 1.4e-29, Sum P(2) = 1.4e-29
 Identities = 34/52 (65%), Positives = 40/52 (76%)

Query:   193 DGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALSREKFG 244
             D + +YTLVYED EGD++LVGDVPW MFVSTV RL VLK+S   +LS  K G
Sbjct:   122 DLNRQYTLVYEDTEGDKVLVGDVPWEMFVSTVKRLHVLKTSHAFSLSPRKHG 173

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2051154 IAA13 "auxin-induced protein 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 79/183 (43%), Positives = 109/183 (59%)

Query:    75 PTALRKVVGWPPIRSFRKN-LAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP---- 129
             P +  +VVGWPPI S R N L    A+K  A E       K  D++P     + N     
Sbjct:    71 PRSSSQVVGWPPIGSHRMNSLVNNQATK-SAREEEEAGKKKVKDDEPKDVTKKVNGKVQV 129

Query:   130 -FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAI 188
              F+K+NMDGV IGRKVDLNA+ SYE L+  ++++F      + +    G+ +  +  K +
Sbjct:   130 GFIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMF-----FRTNPGTVGLTS--QFTKPL 182

Query:   189 TGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS-REKFGNSR 247
               +LDGS E+ L YED EGD MLVGDVPW MF+++V RLRV+K+SE + L+ R +  N R
Sbjct:   183 R-LLDGSSEFVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEANGLAARNQEPNER 241

Query:   248 QDK 250
             Q K
Sbjct:   242 QRK 244

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

TAIR|locus:2139890 IAA11 "indole-3-acetic acid inducible 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 69/158 (43%), Positives = 97/158 (61%)

Query:    80 KVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNP-FVKINMDGV 138
             +VVGWPPIR++R N +  + +K  A+E PN   S+ V++  +     +N  FVK+ MDG+
Sbjct:    88 QVVGWPPIRTYRMN-SMVNQAKASATEDPNLEISQAVNKNRSDSTKMRNSMFVKVTMDGI 146

Query:   139 PIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEY 198
             PIGRK+DLNA+  YE LS  ++E+F       R     G +     E  +  + DGS   
Sbjct:   147 PIGRKIDLNAHKCYESLSNTLEEMFLKPKLGSRTLETDGHM-----ETPVKILPDGSSGL 201

Query:   199 TLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVS 236
              L YED EGD MLVGDVPW MF+ +V RLR++K+SE +
Sbjct:   202 VLTYEDKEGDWMLVGDVPWGMFIGSVRRLRIMKTSEAT 239

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=RCA;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2119976 PAP2 "AT4G29080" [Arabidopsis thaliana (taxid:3702)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 69/166 (41%), Positives = 99/166 (59%)

Query:    75 PTALRKVVGWPPIRSFRKNLAGASASKLPASESPND-VPSKTVDEKPAHEPGRKNPFVKI 133
             P +  +VVGWPPIRSFRKN   +S S+ P + S  +   +K+  E+P         +VK+
Sbjct:   138 PASKAQVVGWPPIRSFRKNSMASSQSQKPGNNSETEEAEAKSGPEQPCL-------YVKV 190

Query:   134 NMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLD 193
             +M+G P  RK+DL  Y SY +LS+A++++F      Q  S  GG       E  +T +L 
Sbjct:   191 SMEGAPYLRKIDLKTYKSYLELSSALEKMFSCFTIGQFGSH-GGCGRDGLNESRLTDLLR 249

Query:   194 GSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEVSALS 239
             GS EY + YED + D MLVGDVPW MF+ +  +LR++KSSE   L+
Sbjct:   250 GS-EYVVTYEDKDSDWMLVGDVPWEMFICSCKKLRIMKSSEAIGLA 294

GO:0005622 "intracellular" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006417 "regulation of translation" evidence=ISS

GO:0009733 "response to auxin stimulus" evidence=ISS;TAS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007389 "pattern specification process" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LAL2	IAA26_ARATH	No assigned EC number	0.6348	0.6679	0.6282	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam02309	188	pfam02309, AUX_IAA, AUX/IAA family	3e-45

>gnl|CDD|216968 pfam02309, AUX_IAA, AUX/IAA family

 Score =  149 bits (379), Expect = 3e-45
 Identities = 62/161 (38%), Positives = 81/161 (50%), Gaps = 43/161 (26%)

Query: 75  PTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKIN 134
           P A  +VVGWPP+RS+RKN      S                             +VK++
Sbjct: 64  PPAKAQVVGWPPVRSYRKNSLREKKSGS---------------------------YVKVS 96

Query: 135 MDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDG 194
           MDG P  RKVDL  Y SY++LS+A++++F          S   I     E   +   L+G
Sbjct: 97  MDGAPYLRKVDLKMYKSYDELSSALEKMF----------SCFTI----GESGLLDL-LNG 141

Query: 195 SGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSSEV 235
           S EY   YED +GD MLVGDVPW MFV +  RLR++K SE 
Sbjct: 142 S-EYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGSEA 181

Transcription of the AUX/IAA family of genes is rapidly induced by the plant hormone auxin. Some members of this family are longer and contain an N terminal DNA binding domain. The function of this region is uncertain. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF02309	215	AUX_IAA: AUX/IAA family; InterPro: IPR003311 The A	100.0
PF00564	84	PB1: PB1 domain; InterPro: IPR000270 The Phox and	97.29
smart00666	81	PB1 PB1 domain. Phox and Bem1p domain, present in	97.06
cd06398	91	PB1_Joka2 The PB1 domain is present in the Nicotia	97.01
cd06407	82	PB1_NLP A PB1 domain is present in NIN like protei	96.97
cd05992	81	PB1 The PB1 domain is a modular domain mediating s	96.72
cd06396	81	PB1_NBR1 The PB1 domain is an essential part of NB	96.49
cd06401	81	PB1_TFG The PB1 domain found in TFG protein, an on	96.29
cd06409	86	PB1_MUG70 The MUG70 protein is a product of the me	95.11
cd06403	80	PB1_Par6 The PB1 domain is an essential part of Pa	94.98
cd06404	83	PB1_aPKC PB1 domain is an essential modular domain	94.98
cd06402	87	PB1_p62 The PB1 domain is an essential part of p62	94.72
cd06397	82	PB1_UP1 Uncharacterized protein 1. The PB1 domain	93.89
cd06408	86	PB1_NoxR The PB1 domain is present in the Epichloe	86.95

>PF02309 AUX_IAA: AUX/IAA family; InterPro: IPR003311 The Aux/IAA family of genes are key regulators of auxin-modified gene expression []

Probab=100.00  E-value=5.2e-54  Score=375.67  Aligned_cols=137  Identities=53%  Similarity=0.896  Sum_probs=6.0

Q ss_pred             CCCCCCCccccCCcchhhcccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceEEEecCcccceeecCCCCCChH
Q 025406           74 FPTALRKVVGWPPIRSFRKNLAGASASKLPASESPNDVPSKTVDEKPAHEPGRKNPFVKINMDGVPIGRKVDLNAYDSYE  153 (253)
Q Consensus        74 ~~~a~aqVVGWPPVRSfRKN~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~fVKV~MDGvpIgRKVDL~~y~sY~  153 (253)
                      .|.+++|+|||||||+||||++...                        .....++||||+|||+||||||||++|+||+
T Consensus        79 ~p~~~~~~vgwpp~~s~r~n~~~~~------------------------~~~~~~~~vKV~mdG~~igRkVDL~~~~sY~  134 (215)
T PF02309_consen   79 PPASKAQVVGWPPVRSFRKNSLSEK------------------------QSSSSRSYVKVNMDGVPIGRKVDLSAYSSYE  134 (215)
T ss_dssp             -------BTTBS----S---------------------------------------------------------------
T ss_pred             CCcccccccCCCccccccccccccc------------------------ccccCCceeEEEecCcccceecCHHHhhCHH
Confidence            3456789999999999999987621                        0122378999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeEEcCCcChhhHhhcceEeEEecCc
Q 025406          154 KLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVTRLRVLKSS  233 (253)
Q Consensus       154 eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwMLVGDVPWemFv~svKRLrImk~S  233 (253)
                      +|+.+|++||.+|.+.++++ .      ..++..+.++++++ +|+|||||+||||||||||||+|||++|||||||+.+
T Consensus       135 ~L~~~L~~MF~~~~i~~~~~-~------~~~~~~~~~~~~~~-~~~l~Y~D~egd~mlvGD~PW~~F~~~vkRl~I~~~~  206 (215)
T PF02309_consen  135 ELSSALEKMFSCFSIEQCGS-H------GLNESGLLDLLNGS-EYVLVYEDKEGDWMLVGDVPWEEFVKSVKRLRIMKSS  206 (215)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhcCCCCcccccc-c------cccchhhccccCCc-ceeEEEECCCCCEEEecCCCHHHHHHHhhccEEecHH
Confidence            99999999998876655433 1      11112233455665 9999999999999999999999999999999999999


Q ss_pred             ccccccccc
Q 025406          234 EVSALSREK  242 (253)
Q Consensus       234 Ea~gl~~~~  242 (253)
                      |+.+|+|+.
T Consensus       207 e~~~~~~r~  215 (215)
T PF02309_consen  207 EAKGLAPRA  215 (215)
T ss_dssp             ---------
T ss_pred             HhcccCCCC
Confidence            999999973

The plant hormone auxin (indole-3-acetic acid, IAA) regulates diverse cellular and developmental responses in plants, including cell division, expansion, differentiation and patterning of embryo responses []. Auxin can regulate the gene expression of several families, including GH3 and SAUR, as well as Aux/IAA itself. The Aux/IAA proteins act as repressors of auxin-induced gene expression, possibly through modulating the activity of DNA-binding auxin response factors (ARFs) (IPR010525 from INTERPRO). Aux/IAA and ARF are thought to interact through C-terminal protein-protein interaction domains found in both Aux/IAA and ARF. Recent evidence suggests that Aux/IAA proteins can also mediate light responses []. Some members of the AUX/IAA family are longer and contain an N-terminal DNA binding domain [] and may have an early function in the establishment of vascular and body patterns in embryonic and post-embryonic development in some plants.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2P1N_F 2P1Q_C 2P1O_C.

>PF00564 PB1: PB1 domain; InterPro: IPR000270 The Phox and Bem1p domain, is present in many eukaryotic cytoplasmic signalling proteins

Probab=97.29  E-value=0.00073  Score=50.01  Aligned_cols=67  Identities=24%  Similarity=0.420  Sum_probs=53.6

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      ||+.-.|. +=|.+.+..--+|++|...+++.|...                            ...+.+.|.|.||||.
T Consensus         4 vK~~~~~~-~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~Y~D~dgD~V   54 (84)
T PF00564_consen    4 VKVRYGGD-IRRIISLPSDVSFDDLRSKIREKFGLL----------------------------DEDFQLKYKDEDGDLV   54 (84)
T ss_dssp             EEEEETTE-EEEEEEECSTSHHHHHHHHHHHHHTTS----------------------------TSSEEEEEEETTSSEE
T ss_pred             EEEEECCe-eEEEEEcCCCCCHHHHHHHHHHHhCCC----------------------------CccEEEEeeCCCCCEE
Confidence            79999995 333588888889999999999999620                            1369999999999999


Q ss_pred             EcCC-cChhhHhhcceE
Q 025406          211 LVGD-VPWHMFVSTVTR  226 (253)
Q Consensus       211 LVGD-VPWemFv~svKR  226 (253)
                      .+-+ .=|++.++.+++
T Consensus        55 ~i~sd~Dl~~a~~~~~~   71 (84)
T PF00564_consen   55 TISSDEDLQEAIEQAKE   71 (84)
T ss_dssp             EESSHHHHHHHHHHHHH
T ss_pred             EeCCHHHHHHHHHHHHh
Confidence            8875 468888887753

The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.; GO: 0005515 protein binding; PDB: 1IPG_A 1IP9_A 2KFK_A 1WMH_A 1VD2_A 1WI0_A 1OEY_C 1PQS_A 1Q1O_A 1TZ1_A ....

>smart00666 PB1 PB1 domain

Probab=97.06  E-value=0.0033  Score=46.48  Aligned_cols=65  Identities=25%  Similarity=0.378  Sum_probs=51.6

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      |||.-.|.  -|.+-+..--+|++|.+.+.+.|..                           . ...+.|.|+|.||||.
T Consensus         4 vK~~~~~~--~~~~~~~~~~s~~dL~~~i~~~~~~---------------------------~-~~~~~l~Y~Dedgd~v   53 (81)
T smart00666        4 VKLRYGGE--TRRLSVPRDISFEDLRSKVAKRFGL---------------------------D-NQSFTLKYQDEDGDLV   53 (81)
T ss_pred             EEEEECCE--EEEEEECCCCCHHHHHHHHHHHhCC---------------------------C-CCCeEEEEECCCCCEE
Confidence            78887553  6778888889999999999999962                           0 1368999999999998


Q ss_pred             EcCC-cChhhHhhcce
Q 025406          211 LVGD-VPWHMFVSTVT  225 (253)
Q Consensus       211 LVGD-VPWemFv~svK  225 (253)
                      .+.+ .=|++.++.++
T Consensus        54 ~l~sd~Dl~~a~~~~~   69 (81)
T smart00666       54 SLTSDEDLEEAIEEYD   69 (81)
T ss_pred             EecCHHHHHHHHHHHH
Confidence            7665 57777777665

Phox and Bem1p domain, present in many eukaryotic cytoplasmic signalling proteins. The domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate.

>cd06398 PB1_Joka2 The PB1 domain is present in the Nicotiana plumbaginifolia Joka2 protein which interacts with sulfur stress inducible UP9 protein

Probab=97.01  E-value=0.0029  Score=49.96  Aligned_cols=68  Identities=21%  Similarity=0.294  Sum_probs=51.6

Q ss_pred             ceEEEecCcccceeecCC---CCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCC
Q 025406          130 FVKINMDGVPIGRKVDLN---AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNE  206 (253)
Q Consensus       130 fVKV~MDGvpIgRKVDL~---~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkE  206 (253)
                      -|||+-+|.-+=-+++++   .--+|++|.+.+.+.|..                           ....+|+|.|.|.|
T Consensus         2 ~vKv~y~~~~rRf~l~~~~~~~d~~~~~L~~kI~~~f~l---------------------------~~~~~~~l~Y~Ded   54 (91)
T cd06398           2 VVKVKYGGTLRRFTFPVAENQLDLNMDGLREKVEELFSL---------------------------SPDADLSLTYTDED   54 (91)
T ss_pred             EEEEEeCCEEEEEEeccccccCCCCHHHHHHHHHHHhCC---------------------------CCCCcEEEEEECCC
Confidence            489999998444455543   467999999999999962                           11247999999999


Q ss_pred             CCeEEcCCcChhhHhhcceE
Q 025406          207 GDRMLVGDVPWHMFVSTVTR  226 (253)
Q Consensus       207 GDwMLVGDVPWemFv~svKR  226 (253)
                      |||...-+.  +++...+.+
T Consensus        55 gd~V~l~~D--~DL~~a~~~   72 (91)
T cd06398          55 GDVVTLVDD--NDLTDAIQY   72 (91)
T ss_pred             CCEEEEccH--HHHHHHHHH
Confidence            999998776  666666655

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module

>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium)

Probab=96.97  E-value=0.0034  Score=48.55  Aligned_cols=55  Identities=18%  Similarity=0.278  Sum_probs=43.3

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      |||...|.  -+.+-|..--+|++|.+.+.++|..                           +..+.|.|.|.|.||||.
T Consensus         3 vK~~~~~d--~~r~~l~~~~~~~~L~~~i~~r~~~---------------------------~~~~~f~LkY~Ddegd~v   53 (82)
T cd06407           3 VKATYGEE--KIRFRLPPSWGFTELKQEIAKRFKL---------------------------DDMSAFDLKYLDDDEEWV   53 (82)
T ss_pred             EEEEeCCe--EEEEEcCCCCCHHHHHHHHHHHhCC---------------------------CCCCeeEEEEECCCCCeE
Confidence            89999886  5556666666999999999999962                           011479999999999998


Q ss_pred             EcCC
Q 025406          211 LVGD  214 (253)
Q Consensus       211 LVGD  214 (253)
                      ++--
T Consensus        54 ~lts   57 (82)
T cd06407          54 LLTC   57 (82)
T ss_pred             Eeec
Confidence            7643

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte

>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity

Probab=96.72  E-value=0.0083  Score=44.05  Aligned_cols=66  Identities=23%  Similarity=0.312  Sum_probs=51.3

Q ss_pred             eEEEecCcccceeecCC-CCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406          131 VKINMDGVPIGRKVDLN-AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  209 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~-~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw  209 (253)
                      |||+-.|.  -|.+=+. .--+|++|.+.|.+.|...                            ...+.+.|+|.||||
T Consensus         3 vK~~~~~~--~~~~~~~~~~~s~~~L~~~i~~~~~~~----------------------------~~~~~l~y~D~e~d~   52 (81)
T cd05992           3 VKVKYGGE--IRRFVVVSRSISFEDLRSKIAEKFGLD----------------------------AVSFKLKYPDEDGDL   52 (81)
T ss_pred             EEEEecCC--CEEEEEecCCCCHHHHHHHHHHHhCCC----------------------------CCcEEEEeeCCCCCE
Confidence            78888774  4555555 8889999999999999620                            136899999999999


Q ss_pred             EEcCC-cChhhHhhcceE
Q 025406          210 MLVGD-VPWHMFVSTVTR  226 (253)
Q Consensus       210 MLVGD-VPWemFv~svKR  226 (253)
                      ..+.+ .=|++-++.+++
T Consensus        53 v~l~sd~Dl~~a~~~~~~   70 (81)
T cd05992          53 VTISSDEDLEEAIEEARR   70 (81)
T ss_pred             EEeCCHHHHHHHHHHHhh
Confidence            98887 577777777653

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06396 PB1_NBR1 The PB1 domain is an essential part of NBR1 protein, next to BRCA1, a scaffold protein mediating specific protein-protein interaction with both titin protein kinase and with another scaffold protein p62

Probab=96.49  E-value=0.011  Score=46.36  Aligned_cols=53  Identities=19%  Similarity=0.293  Sum_probs=44.9

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      |||.-.|.-+--+++-+..-+|++|.+.+.++|+-                           +   .|.+.|-|.||||.
T Consensus         3 vKaty~~d~~rf~~~~~~~~~~~~L~~ev~~rf~l---------------------------~---~f~lKYlDde~e~v   52 (81)
T cd06396           3 LKVTYNGESQSFLVSDSENTTWASVEAMVKVSFGL---------------------------N---DIQIKYVDEENEEV   52 (81)
T ss_pred             EEEEECCeEEEEEecCCCCCCHHHHHHHHHHHhCC---------------------------C---cceeEEEcCCCCEE
Confidence            78999998777777777788999999999999951                           2   58999999999998


Q ss_pred             EcC
Q 025406          211 LVG  213 (253)
Q Consensus       211 LVG  213 (253)
                      ++-
T Consensus        53 ~ls   55 (81)
T cd06396          53 SVN   55 (81)
T ss_pred             EEE
Confidence            763

A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The NBR1 protein contains a type I PB1 domain.

>cd06401 PB1_TFG The PB1 domain found in TFG protein, an oncogenic gene product and fusion partner to nerve growth factor tyrosine kinase receptor TrkA and to the tyrosine kinase ALK

Probab=96.29  E-value=0.029  Score=44.03  Aligned_cols=72  Identities=22%  Similarity=0.437  Sum_probs=49.0

Q ss_pred             eEEEecCcccceeecCCCC-CChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406          131 VKINMDGVPIGRKVDLNAY-DSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  209 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y-~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw  209 (253)
                      +|+.-+|.  -|++=+..- -+|.+|...+++.|..-                         +..+..+.+.|.|.|||+
T Consensus         3 iK~~~g~D--iR~~~~~~~~~t~~~L~~~v~~~F~~~-------------------------~~~~~~flIKYkD~dGDl   55 (81)
T cd06401           3 LKAQLGDD--IRRIPIHNEDITYDELLLMMQRVFRGK-------------------------LGSSDDVLIKYKDEDGDL   55 (81)
T ss_pred             EEEEeCCe--EEEEeccCccccHHHHHHHHHHHhccc-------------------------cCCcccEEEEEECCCCCE
Confidence            67777663  455544443 39999999999999731                         112457999999999999


Q ss_pred             EEcCCc---ChhhHhhcceEeEE
Q 025406          210 MLVGDV---PWHMFVSTVTRLRV  229 (253)
Q Consensus       210 MLVGDV---PWemFv~svKRLrI  229 (253)
                      .-+.+-   -|..=....+||+|
T Consensus        56 VTIts~~dL~~A~~~~~~~~l~~   78 (81)
T cd06401          56 ITIFDSSDLSFAIQCSRILKLTL   78 (81)
T ss_pred             EEeccHHHHHHHHhcCcceEEEE
Confidence            999874   34433334445554

The PB1 domain is a modular domain mediating specific protein-protein interaction in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. The PB1 domains of TFG represent a type I/II PB1 domain. The physiological function of TFG remains unknown.

>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain

Probab=95.11  E-value=0.05  Score=42.94  Aligned_cols=50  Identities=28%  Similarity=0.421  Sum_probs=36.2

Q ss_pred             ccceeecC--CCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeEEcC
Q 025406          139 PIGRKVDL--NAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVG  213 (253)
Q Consensus       139 pIgRKVDL--~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwMLVG  213 (253)
                      |-||.+=+  ....|+.+|.+++.+=|+.-                       .  ...+.|.|.|.|.||||.+.-
T Consensus         8 ~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d-----------------------~--~~~~~~~L~YlDDEgD~VllT   59 (86)
T cd06409           8 PKGRVHRFRLRPSESLEELRTLISQRLGDD-----------------------D--FETHLYALSYVDDEGDIVLIT   59 (86)
T ss_pred             CCCCEEEEEecCCCCHHHHHHHHHHHhCCc-----------------------c--ccCCcccEEEEcCCCCEEEEe
Confidence            45665444  44789999999999988520                       0  002469999999999999864

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is

>cd06403 PB1_Par6 The PB1 domain is an essential part of Par6 protein which in complex with Par3 and aPKC proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.98  E-value=0.077  Score=41.66  Aligned_cols=72  Identities=21%  Similarity=0.295  Sum_probs=50.9

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      ||.+-|+.=-=-.+|.....+|+++++-|+.||..                           . .-.|++-|.|.+||.+
T Consensus         3 VKSkfdaEfRRFsl~r~~~~~f~ef~~ll~~lH~l---------------------------~-~~~f~i~Y~D~~gDLL   54 (80)
T cd06403           3 VKSKFDAEFRRFSLDRNKPGKFEDFYKLLEHLHHI---------------------------P-NVDFLIGYTDPHGDLL   54 (80)
T ss_pred             eecccCCeEEEEEeccccCcCHHHHHHHHHHHhCC---------------------------C-CCcEEEEEeCCCCCEe
Confidence            66666765222234555569999999999999962                           1 1369999999999999


Q ss_pred             EcC-CcChhhHhhcceE-eEEe
Q 025406          211 LVG-DVPWHMFVSTVTR-LRVL  230 (253)
Q Consensus       211 LVG-DVPWemFv~svKR-LrIm  230 (253)
                      -+- |+-...=++++++ |||.
T Consensus        55 PInNDdNf~kAlssa~plLRl~   76 (80)
T cd06403          55 PINNDDNFLKALSSANPLLRIF   76 (80)
T ss_pred             cccCcHHHHHHHHcCCCceEEE
Confidence            765 5566666677775 4443

The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The

>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells

Probab=94.98  E-value=0.085  Score=41.66  Aligned_cols=56  Identities=27%  Similarity=0.328  Sum_probs=42.8

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      ||+.-.|.-.--.+|.  .-+|++|.+.+.+||.-                          .. ...|++.|.|.|||--
T Consensus         3 ~K~~y~gdi~it~~d~--~~s~e~L~~~v~~~c~~--------------------------~~-~q~ft~kw~DEEGDp~   53 (83)
T cd06404           3 VKAAYNGDIMITSIDP--SISLEELCNEVRDMCRF--------------------------HN-DQPFTLKWIDEEGDPC   53 (83)
T ss_pred             EEEEecCcEEEEEcCC--CcCHHHHHHHHHHHhCC--------------------------CC-CCcEEEEEECCCCCce
Confidence            7888899755445555  77899999999999962                          11 1369999999999987


Q ss_pred             EcCCc
Q 025406          211 LVGDV  215 (253)
Q Consensus       211 LVGDV  215 (253)
                      -+...
T Consensus        54 tiSS~   58 (83)
T cd06404          54 TISSQ   58 (83)
T ss_pred             eecCH
Confidence            66653

PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,

>cd06402 PB1_p62 The PB1 domain is an essential part of p62 scaffold protein (alias sequestosome 1,SQSTM) involved in cell signaling, receptor internalization, and protein turnover

Probab=94.72  E-value=0.11  Score=41.03  Aligned_cols=59  Identities=29%  Similarity=0.429  Sum_probs=42.0

Q ss_pred             ceEEEecC---cccceeecC--CCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEec
Q 025406          130 FVKINMDG---VPIGRKVDL--NAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYED  204 (253)
Q Consensus       130 fVKV~MDG---vpIgRKVDL--~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYED  204 (253)
                      .||.+..|   .+=-|++-|  ....+|++|.+.+.++|..                          +.+ ..|++.|.|
T Consensus         2 ~vkayl~~~~~~~EIRRf~l~~~~~~s~~~L~~~V~~~f~~--------------------------l~~-~~ftlky~D   54 (87)
T cd06402           2 TVKAYLLGKDANAEIRRFAIDEDVSTSYEYLVEKVAAVFPS--------------------------LRG-KNFQLFWKD   54 (87)
T ss_pred             eEEEeecCCCCccceEEEEecCCCCcCHHHHHHHHHHHccc--------------------------cCC-CcEEEEEEC
Confidence            56777666   233344444  6667999999999999952                          111 379999999


Q ss_pred             CCCCeEEcCCc
Q 025406          205 NEGDRMLVGDV  215 (253)
Q Consensus       205 kEGDwMLVGDV  215 (253)
                      .|||..-....
T Consensus        55 eeGDlvtIssd   65 (87)
T cd06402          55 EEGDLVAFSSD   65 (87)
T ss_pred             CCCCEEeecCH
Confidence            99998876653

The PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.

>cd06397 PB1_UP1 Uncharacterized protein 1

Probab=93.89  E-value=0.22  Score=39.35  Aligned_cols=66  Identities=18%  Similarity=0.310  Sum_probs=50.9

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      -||+-+|.  .|++....-=+|.+|.+.|+.+|...                           .. .+.++|-|.|||..
T Consensus         3 fKv~~~g~--~RRf~~~~~pt~~~L~~kl~~Lf~lp---------------------------~~-~~~vtYiDeD~D~I   52 (82)
T cd06397           3 FKSSFLGD--TRRIVFPDIPTWEALASKLENLYNLP---------------------------EI-KVGVTYIDNDNDEI   52 (82)
T ss_pred             EEEEeCCc--eEEEecCCCccHHHHHHHHHHHhCCC---------------------------hh-HeEEEEEcCCCCEE
Confidence            48888885  89999888899999999999999631                           01 38999999999987


Q ss_pred             EcC-CcChhhHhhcceE
Q 025406          211 LVG-DVPWHMFVSTVTR  226 (253)
Q Consensus       211 LVG-DVPWemFv~svKR  226 (253)
                      -+- |.=-++|.+-..|
T Consensus        53 Tlssd~eL~d~~~~~~~   69 (82)
T cd06397          53 TLSSNKELQDFYRLSHR   69 (82)
T ss_pred             EecchHHHHHHHHhccc
Confidence            554 4556666654444

The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.

>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA

Probab=86.95  E-value=2.4  Score=33.60  Aligned_cols=64  Identities=17%  Similarity=0.298  Sum_probs=49.1

Q ss_pred             ceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406          130 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  209 (253)
Q Consensus       130 fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw  209 (253)
                      =|||+-.|.  .|-|-+..-=+|++|...+.++|+.                             ...+++-|.|. ||.
T Consensus         4 kVKv~~~~D--v~~i~v~~~i~f~dL~~kIrdkf~~-----------------------------~~~~~iKykDE-GD~   51 (86)
T cd06408           4 RVKVHAQDD--TRYIMIGPDTGFADFEDKIRDKFGF-----------------------------KRRLKIKMKDD-GDM   51 (86)
T ss_pred             EEEEEecCc--EEEEEcCCCCCHHHHHHHHHHHhCC-----------------------------CCceEEEEEcC-CCC
Confidence            488888887  6677777777899999999999961                             13689999999 999


Q ss_pred             EEcCCc-ChhhHhhcce
Q 025406          210 MLVGDV-PWHMFVSTVT  225 (253)
Q Consensus       210 MLVGDV-PWemFv~svK  225 (253)
                      .-++|- =-++=+.++|
T Consensus        52 iti~sq~DLd~Ai~~a~   68 (86)
T cd06408          52 ITMGDQDDLDMAIDTAR   68 (86)
T ss_pred             ccccCHHHHHHHHHHHH
Confidence            888874 3445555554

NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
1vd2_A	89	Protein kinase C, IOTA type; PB1 domain, OPCA moti	95.84
1wmh_B	86	Partitioning defective-6 homolog alpha; kinase, PB	95.36
2kkc_A	102	Sequestosome-1; P62, PB1, autophagy, ubiquitin-pro	94.63
2ktr_A	117	Sequestosome-1; autophagy, NF-KB signaling, HOMO-o	93.33
1q1o_A	98	Cell division control protein 24; PB1 domain, PCCR	87.87
1oey_J	107	P40-PHOX, neutrophil cytosol factor 4; immune syst	83.67

>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A

Probab=95.84  E-value=0.02  Score=44.20  Aligned_cols=57  Identities=23%  Similarity=0.240  Sum_probs=42.7

Q ss_pred             CceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCC
Q 025406          129 PFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGD  208 (253)
Q Consensus       129 ~fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGD  208 (253)
                      +=||++-.|.-+  .+.+..--+|++|...|.++|.-                          .. ...+++.|.|.|||
T Consensus         7 vkvK~~~~gdi~--~~~v~~~i~~~~L~~kv~~~~~~--------------------------~~-~~~f~lky~DEeGD   57 (89)
T 1vd2_A            7 VRVKAYYRGDIM--ITHFEPSISFEGLCNEVRDMCSF--------------------------DN-EQLFTMKWIDEEGD   57 (89)
T ss_dssp             EEEEEESSSCEE--EEEECTTCCHHHHHHHHHHHTTC--------------------------CS-SCCEEEEECCSSSC
T ss_pred             EEEEEEeCCeEE--EEECCCCCCHHHHHHHHHHHhCC--------------------------CC-CCeEEEEEECCCCC
Confidence            568889999744  44444456999999999999962                          01 13699999999999


Q ss_pred             eEEcCC
Q 025406          209 RMLVGD  214 (253)
Q Consensus       209 wMLVGD  214 (253)
                      +.-+-.
T Consensus        58 ~itisS   63 (89)
T 1vd2_A           58 PCTVSS   63 (89)
T ss_dssp             CEECCS
T ss_pred             cccccC
Confidence            876543

>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2

Probab=95.36  E-value=0.038  Score=42.62  Aligned_cols=69  Identities=14%  Similarity=0.125  Sum_probs=50.6

Q ss_pred             CceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCC
Q 025406          129 PFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGD  208 (253)
Q Consensus       129 ~fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGD  208 (253)
                      .-||.+-|+.--=-.+|-+.-.+|++|..-|+++|..                           . ..+|++.|.|.|||
T Consensus         7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L---------------------------~-~~~f~i~Y~D~dGD   58 (86)
T 1wmh_B            7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI---------------------------P-GLDVLLGYTDAHGD   58 (86)
T ss_dssp             EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC---------------------------T-TCCCEEEEECTTSC
T ss_pred             EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCC---------------------------C-CCCEEEEEECCCCC
Confidence            4588888886322345555678999999999999961                           1 13699999999999


Q ss_pred             eEEcCCc-ChhhHhhcce
Q 025406          209 RMLVGDV-PWHMFVSTVT  225 (253)
Q Consensus       209 wMLVGDV-PWemFv~svK  225 (253)
                      ++-.-+. -..+=+.++|
T Consensus        59 LlpInnDdnl~~Al~~a~   76 (86)
T 1wmh_B           59 LLPLTNDDSLHRALASGP   76 (86)
T ss_dssp             EEECCSHHHHHHHTTSSS
T ss_pred             EeeecCHHHHHHHHHhCC
Confidence            9987664 4555556666

>2kkc_A Sequestosome-1; P62, PB1, autophagy, ubiquitin-proteasome system, NF-KB signaling, alternative splicing, apoptosis, cytoplasm, differentiation; NMR {Rattus norvegicus} PDB: 2ktr_B

Probab=94.63  E-value=0.056  Score=42.61  Aligned_cols=61  Identities=23%  Similarity=0.255  Sum_probs=44.0

Q ss_pred             CCceEEEecCc----ccceeecCCC-----------CCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccC
Q 025406          128 NPFVKINMDGV----PIGRKVDLNA-----------YDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVL  192 (253)
Q Consensus       128 ~~fVKV~MDGv----pIgRKVDL~~-----------y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll  192 (253)
                      ++-||++..|.    .=-|++-|..           -.+|++|...++++|..                          |
T Consensus         5 ~~~vKayl~~~~~~~~EiRRF~l~~~~~p~~~~~~~~~s~~~L~~~V~~lFp~--------------------------l   58 (102)
T 2kkc_A            5 SLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPCERLLSRVAVLFPA--------------------------L   58 (102)
T ss_dssp             EEEEEEEEECSSSCEEEEEEEEEESSSCSCSSSCCSCCHHHHHHHHHHHHCTT--------------------------S
T ss_pred             eEEEEEEEccCCCCCCceEEEEeccCCCcccccccccccHHHHHHHHHHHccc--------------------------c
Confidence            35688888752    3346555532           24899999999999963                          1


Q ss_pred             CCCCceEEEEecCCCCeEEcCCc
Q 025406          193 DGSGEYTLVYEDNEGDRMLVGDV  215 (253)
Q Consensus       193 ~gs~eyvltYEDkEGDwMLVGDV  215 (253)
                      .+ .+|.+.|.|.|||..-..+.
T Consensus        59 ~~-~~f~l~Y~DedGDlItiSsD   80 (102)
T 2kkc_A           59 RP-GGFQAHYRAERGDLVAFSSD   80 (102)
T ss_dssp             CS-SCEEEEEECTTCCEEEECSH
T ss_pred             CC-CcEEEEEECCCCCEEEecCH
Confidence            12 36999999999998877664

>2ktr_A Sequestosome-1; autophagy, NF-KB signaling, HOMO-oligomer, PB1 dimer, signaling protein, transport protein; NMR {Rattus norvegicus}

Probab=93.33  E-value=0.16  Score=41.12  Aligned_cols=62  Identities=23%  Similarity=0.262  Sum_probs=44.6

Q ss_pred             CCCceEEEecC----cccceeecCC-----------CCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhcc
Q 025406          127 KNPFVKINMDG----VPIGRKVDLN-----------AYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGV  191 (253)
Q Consensus       127 ~~~fVKV~MDG----vpIgRKVDL~-----------~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~l  191 (253)
                      .++-||++..|    ..==|++-|.           .-.+|++|...++++|..                          
T Consensus        19 ~~l~vKayl~~~~~~~~EIRRF~l~~~~~p~~~~~~~~~s~~~L~~kV~~lFp~--------------------------   72 (117)
T 2ktr_A           19 GSLTVKAYLLGKEEAAREIRRFSFCFSPEPEAEAAAGPGPSERLLSRVAVLFPA--------------------------   72 (117)
T ss_dssp             -CEEEEEEEECSSSCEEEEEEEEECSSSCSCSSSCCSCCHHHHHHHHHHHHCTT--------------------------
T ss_pred             ccEEEEEEEecCCCCCCcEEEEEeccCCCccccccccCCCHHHHHHHHHHHccc--------------------------
Confidence            45789999975    1224555554           135999999999999952                          


Q ss_pred             CCCCCceEEEEecCCCCeEEcCCc
Q 025406          192 LDGSGEYTLVYEDNEGDRMLVGDV  215 (253)
Q Consensus       192 l~gs~eyvltYEDkEGDwMLVGDV  215 (253)
                      |.+ ..|.+.|.|.|||+.-.-..
T Consensus        73 L~~-~~f~l~YkDEdGDlItISsD   95 (117)
T 2ktr_A           73 LRP-GGFQAHYRAERGDLVAFSSD   95 (117)
T ss_dssp             SCS-SCEEEEEECTTCCEEEECSH
T ss_pred             cCC-CcEEEEEECCCCCEEEecCH
Confidence            112 36999999999998876653

>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B

Probab=87.87  E-value=1.4  Score=34.52  Aligned_cols=74  Identities=14%  Similarity=0.262  Sum_probs=52.4

Q ss_pred             CceEEEecCcc----c--ceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEE
Q 025406          129 PFVKINMDGVP----I--GRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVY  202 (253)
Q Consensus       129 ~fVKV~MDGvp----I--gRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltY  202 (253)
                      .-|||+-++..    +  .|.|=...-=+|++|...+.+-|..+..                    .+ .  +....+-|
T Consensus         6 ikVKv~y~~~~~~~~~~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~~--------------------~~-i--~~~~klkY   62 (98)
T 1q1o_A            6 ILFRISYNNNSNNTSSSEIFTLLVEKVWNFDDLIMAINSKISNTHN--------------------NN-I--SPITKIKY   62 (98)
T ss_dssp             EEEEEEECSSCSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHCS--------------------SC-C--CCCCCEEE
T ss_pred             EEEEEEecCcccccccCcEEEEEecCCCCHHHHHHHHHHHHcCCcc--------------------cc-c--cceeEEEE
Confidence            45777766321    2  2566667778999999999999974300                    00 0  13468999


Q ss_pred             ecCCCCeEEcCC-cChhhHhhcce
Q 025406          203 EDNEGDRMLVGD-VPWHMFVSTVT  225 (253)
Q Consensus       203 EDkEGDwMLVGD-VPWemFv~svK  225 (253)
                      +|.|||+...++ .=|+|=+++++
T Consensus        63 kDEdGD~Vtl~sddDl~~A~e~~~   86 (98)
T 1q1o_A           63 QDEDGDFVVLGSDEDWNVAKEMLA   86 (98)
T ss_dssp             ECSSSCEEEECSHHHHHHHHHHHH
T ss_pred             EcCCCCEEEEcCHHHHHHHHHHHH
Confidence            999999988776 58999888763

>1oey_J P40-PHOX, neutrophil cytosol factor 4; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2

Probab=83.67  E-value=1.8  Score=34.62  Aligned_cols=40  Identities=25%  Similarity=0.330  Sum_probs=32.4

Q ss_pred             cCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeEEcCC
Q 025406          145 DLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRMLVGD  214 (253)
Q Consensus       145 DL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwMLVGD  214 (253)
                      ||+.--+|.+|..-..+-|..                              .+-+|-|.|.|||+.-+=|
T Consensus        28 dl~~~P~ykdLl~lmr~~F~~------------------------------~DIaLNYrD~eGDLIrild   67 (107)
T 1oey_J           28 DLSSTPLLKDLLELTRREFQR------------------------------EDIALNYRDAEGDLVRLLS   67 (107)
T ss_dssp             CTTCCCCHHHHHHHHHHHHCC------------------------------SSEEEEEECTTSCEEECCS
T ss_pred             ccccCCCHHHHHHHHHHHhcc------------------------------cceeeeeecCCCCEEEEcc
Confidence            677888999999999998851                              2568999999999965444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d2bkfa1	85	Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Hum	96.89
d1ip9a_	85	Bud emergence mediator Bemp1 {Baker's yeast (Sacch	95.95
d1wmhb_	82	Partitioning defective-6 homolog alpha, PAR-6 alph	84.29

>d2bkfa1 d.15.2.2 (A:1-85) Next to BRCA1 gene 1 protein, NBR1 (KIAA0049) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Next to BRCA1 gene 1 protein, NBR1 (KIAA0049)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.0012  Score=49.08  Aligned_cols=65  Identities=11%  Similarity=0.133  Sum_probs=50.3

Q ss_pred             ceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCe
Q 025406          130 FVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDR  209 (253)
Q Consensus       130 fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDw  209 (253)
                      =|||+..|..+=-+|-...-.+|++|...+.+.|..                              .++.|.|.|.||||
T Consensus         6 tvKvtf~~dt~RF~ls~~~~~~~~~L~~~i~~rf~l------------------------------~~~~lkY~Ddd~e~   55 (85)
T d2bkfa1           6 TLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDL------------------------------NTIQIKYLDEENEE   55 (85)
T ss_dssp             EEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTC------------------------------SSEEEEEECTTSCE
T ss_pred             EEEEEECCceEEEEecCCCCCcHHHHHHHHHHhcCc------------------------------ccceEEEEcCCCCE
Confidence            489999887665577777889999999999999951                              24899999999999


Q ss_pred             EEcCC-cChhhHhhcc
Q 025406          210 MLVGD-VPWHMFVSTV  224 (253)
Q Consensus       210 MLVGD-VPWemFv~sv  224 (253)
                      .++.- .=-++.+..+
T Consensus        56 v~l~~d~dl~E~~~~a   71 (85)
T d2bkfa1          56 VSINSQGEYEEALKMA   71 (85)
T ss_dssp             EEECSHHHHHHHHHHH
T ss_pred             EEEecHHHHHHHHHHH
Confidence            87753 4455554433

>d1ip9a_ d.15.2.2 (A:) Bud emergence mediator Bemp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Bud emergence mediator Bemp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.95  E-value=0.0081  Score=43.52  Aligned_cols=70  Identities=10%  Similarity=0.102  Sum_probs=50.8

Q ss_pred             CCCceEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCC
Q 025406          127 KNPFVKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNE  206 (253)
Q Consensus       127 ~~~fVKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkE  206 (253)
                      ++.=|||+.++.  -|.+=|..--+|.+|...+.+.|..                              ..++|-|+|.|
T Consensus        11 ~~ikVKv~~~~D--~~~~~l~~~it~~dL~~kI~~rf~~------------------------------~~~~lkY~Ded   58 (85)
T d1ip9a_          11 KTTKIKFYYKDD--IFALMLKGDTTYKELRSKIAPRIDT------------------------------DNFKLQTKLFD   58 (85)
T ss_dssp             CCEEEEECBTTC--CEEEEECSCCCHHHHHHHHHHHHTS------------------------------SCEEEEECCSS
T ss_pred             CCEEEEEEECCc--EEEEEeCCCCCHHHHHHHHHHHhCC------------------------------CceEEEEEcCC
Confidence            456789998887  4455555668899999999999951                              24899999999


Q ss_pred             CCeEEcCC-cChhhHhhcceEeE
Q 025406          207 GDRMLVGD-VPWHMFVSTVTRLR  228 (253)
Q Consensus       207 GDwMLVGD-VPWemFv~svKRLr  228 (253)
                      |||..+-+ .=+++=++...||.
T Consensus        59 gd~v~i~sD~Dl~~ai~~~~kl~   81 (85)
T d1ip9a_          59 GSGEEIKTDSQVSNIIQAKLKIS   81 (85)
T ss_dssp             SCCSCCCSHHHHHHHHHTTCCEE
T ss_pred             CCEEEEeCHHHHHHHHHhcCcEE
Confidence            99986654 45565555444443

>d1wmhb_ d.15.2.2 (B:) Partitioning defective-6 homolog alpha, PAR-6 alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: CAD & PB1 domains
family: PB1 domain
domain: Partitioning defective-6 homolog alpha, PAR-6 alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.29  E-value=1.3  Score=32.11  Aligned_cols=67  Identities=15%  Similarity=0.157  Sum_probs=46.8

Q ss_pred             eEEEecCcccceeecCCCCCChHHHHHHHHHHhhhhhhcccCCCCCCccchhhhHHhhhccCCCCCceEEEEecCCCCeE
Q 025406          131 VKINMDGVPIGRKVDLNAYDSYEKLSAAVDELFRGLLAAQRDSSAGGIVNKQEEEKAITGVLDGSGEYTLVYEDNEGDRM  210 (253)
Q Consensus       131 VKV~MDGvpIgRKVDL~~y~sY~eL~~aLe~MF~~~~~~q~~ss~~~~~~~~ee~~~~~~ll~gs~eyvltYEDkEGDwM  210 (253)
                      ||=+-|.+=-=-.+|.+...+|++.+.-|+.|-..                           . .-++.+.|.|..||.+
T Consensus         5 VKSKFdAEfRRFsl~r~~~~~fe~F~~Lle~~H~l---------------------------~-~~~f~i~Y~D~hgDLL   56 (82)
T d1wmhb_           5 VKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQI---------------------------P-GLDVLLGYTDAHGDLL   56 (82)
T ss_dssp             EEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTC---------------------------T-TCCCEEEEECTTSCEE
T ss_pred             eecccCceEEEeeeccccccCHHHHHHHHHHHcCC---------------------------C-CCcEEEEEecCCCCcc
Confidence            44444443222257777889999999999998852                           1 2379999999999999


Q ss_pred             EcCC-cChhhHhhcce
Q 025406          211 LVGD-VPWHMFVSTVT  225 (253)
Q Consensus       211 LVGD-VPWemFv~svK  225 (253)
                      -.-. .-+.-=++|++
T Consensus        57 PINNDdNf~kA~~sa~   72 (82)
T d1wmhb_          57 PLTNDDSLHRALASGP   72 (82)
T ss_dssp             ECCSHHHHHHHTTSSS
T ss_pred             cccCchHHHHHHHhcC
Confidence            8764 44444455665