Citrus Sinensis ID: 025411

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRGLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVREL
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEEEccccHHHHHHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHcHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcEEEEEccccHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEHHHHHHHHHHcccccccEccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mdhgsnpqmqmsdeqhaihhvnyvpehelhhisngdvmddehdegngvgeseamegdapsdpgslsdnravseigdqltlsfqgqvyvfdsvSPEKVQAVLLLLggrevpsttpaipiannqnnrglpgtpqrlsvPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRnkgqftsaksnnedsasaisswgsnqswagdvngsqnqdivcrhcgisekstpmmrrgpegprtlcNACGLMWANKVREL
Flexible Loop (DISEMBL)
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSttpaipiannqnnrglpgtpqrlsvpqRLASLIrfrekrkernfekkirytvrkevalrmqrnkgqftsaksnneDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGIsekstpmmrrgpeGPRTLCNACGLMWANKVREL
Low Complexity Region (SEG)
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRGLPGTPQRLSVPQRLASLirfrekrkernfekkirYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVREL
Disordered region (IsUnstruct)
*******************HVNYV*************************************************IGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREV*************************************************IRYTVR***********************************************DIVCRHCGI****************TLCNACGLMWAN*****
Disordered Region (DISOPRED)
********************************************************************************SFQGQVYVFDSVSPEKV**********************************************************************************SAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVRE*
Disordered Region (DISEMBL)
***********SDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGE**************LSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRGLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKG*******************GSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVREL
Disordered Region (DISPRO)
*****************I**V*YVPEHELH********************************************GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPST**A****************QRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQ***************************************DI*C**CGISEKSTPMMRRGPEGPRTLCNACGLMWANKVREL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDHGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIANNQNNRGLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVREL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q8H1G0	302	GATA transcription factor	yes	no	0.968	0.811	0.690	1e-93
Q8GXL7	297	GATA transcription factor	no	no	0.972	0.828	0.661	4e-88
Q9LRH6	309	GATA transcription factor	no	no	0.683	0.559	0.538	4e-46
Q8L500	468	Two-component response re	no	no	0.498	0.269	0.312	2e-07
O50055	355	Zinc finger protein CONST	no	no	0.332	0.236	0.370	7e-07
B0G188	695	GATA zinc finger domain-c	yes	no	0.150	0.054	0.525	8e-07
A2YQ93	742	Two-component response re	N/A	no	0.162	0.055	0.560	1e-06
Q0D3B6	742	Two-component response re	no	no	0.162	0.055	0.560	1e-06
Q00858	457	Cutinase gene palindrome-	N/A	no	0.162	0.089	0.488	2e-06
Q93WK5	727	Two-component response re	no	no	0.205	0.071	0.472	2e-06

>sp|Q8H1G0|GAT28_ARATH GATA transcription factor 28 OS=Arabidopsis thaliana GN=GATA28 PE=2 SV=1

 Score =  342 bits (878), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 176/255 (69%), Positives = 202/255 (79%), Gaps = 10/255 (3%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSD 61
           HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS 
Sbjct: 5   HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSH 62

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 63  PGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 122

Query: 117 PIANNQNNR--GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 174
             + +QNNR   LPGTPQR S+PQRLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRN
Sbjct: 123 LGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRN 182

Query: 175 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 234
           KGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 183 KGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAG 242

Query: 235 PRTLCNACGLMWANK 249
           PRTLCNACGLMWANK
Sbjct: 243 PRTLCNACGLMWANK 257

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8GXL7|GAT24_ARATH GATA transcription factor 24 OS=Arabidopsis thaliana GN=GATA24 PE=2 SV=2

 Score =  324 bits (830), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 197/260 (75%), Gaps = 14/260 (5%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNR--GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNK 175
            + +QNNR  GL GTPQRLSVPQRLASL+RFREKRK RNF+K IRYTVRKEVALRMQR K
Sbjct: 120 GSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKK 179

Query: 176 GQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGP 235
           GQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GP
Sbjct: 180 GQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGP 239

Query: 236 RTLCNACGLMWANK--VREL 253
           RTLCNACGLMWANK  +R+L
Sbjct: 240 RTLCNACGLMWANKGTLRDL 259

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRH6|GAT25_ARATH GATA transcription factor 25 OS=Arabidopsis thaliana GN=GATA25 PE=2 SV=2

 Score =  184 bits (468), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/184 (53%), Positives = 123/184 (66%), Gaps = 11/184 (5%)

Query: 73  EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI-PIANNQNNRGLPGTP 131
           E  +QLT+SF+GQVYVFD+V  +KV AVL LLGG    +  P +  +A  QN+  +    
Sbjct: 79  EGANQLTISFRGQVYVFDAVGADKVDAVLSLLGGSTELAPGPQVMELAQQQNHMPVVEYQ 138

Query: 132 QRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKSNNEDSASA 191
            R S+PQR  SL RFR+KR  R FEKK+RY VR+EVALRM RNKGQFTS+K  +      
Sbjct: 139 SRCSLPQRAQSLDRFRKKRNARCFEKKVRYGVRQEVALRMARNKGQFTSSKMTD-----G 193

Query: 192 ISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK-- 249
             + G++Q  A D     + +I C HCGIS K TPMMRRGP GPRTLCNACGL WAN+  
Sbjct: 194 AYNSGTDQDSAQD---DAHPEISCTHCGISSKCTPMMRRGPSGPRTLCNACGLFWANRGT 250

Query: 250 VREL 253
           +R+L
Sbjct: 251 LRDL 254

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L500|APRR9_ARATH Two-component response regulator-like APRR9 OS=Arabidopsis thaliana GN=APRR9 PE=2 SV=2

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 45/144 (31%), Positives = 76/144 (52%), Gaps = 18/144 (12%)

Query: 60  SDPGSLSDNRAVSEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIPIA 119
           SD GS + +     IG   ++SF+ QV +  +V+ +K  + + +   RE  + +  +   
Sbjct: 328 SDQGSATTSSNQENIGSS-SVSFRNQV-LQSTVTNQKQDSPIPVESNRE-KAASKEVEAG 384

Query: 120 NNQNNRGLPG-------------TPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKE 166
           +   N G+ G               QR S  QR A+L++FR KRK+R F+KK+RY  RK+
Sbjct: 385 SQSTNEGIAGQSSSTEKPKEEESAKQRWSRSQREAALMKFRLKRKDRCFDKKVRYQSRKK 444

Query: 167 VALRMQRNKGQFTSAKSNNEDSAS 190
           +A +  R KGQF   ++ N D+++
Sbjct: 445 LAEQRPRVKGQF--VRTVNSDAST 466

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 54.3 bits (129), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 5/89 (5%)

Query: 111 STTPAIPIANNQNNRGLPGTP-----QRLSVPQRLASLIRFREKRKERNFEKKIRYTVRK 165
           STT    ++N ++ + +   P     Q LS   R A ++R+REK+K R FEK IRY  RK
Sbjct: 253 STTSDATVSNPRSPKAVTDQPPYPPAQMLSPRDREARVLRYREKKKMRKFEKTIRYASRK 312

Query: 166 EVALRMQRNKGQFTSAKSNNEDSASAISS 194
             A +  R KG+F   K  +E++  A S+
Sbjct: 313 AYAEKRPRIKGRFAKKKDVDEEANQAFST 341

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|B0G188|GTAP_DICDI GATA zinc finger domain-containing protein 16 OS=Dictyostelium discoideum GN=gtaP PE=4 SV=1

 Score = 54.3 bits (129), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 21/40 (52%), Positives = 28/40 (70%), Gaps = 2/40 (5%)

Query: 212 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR 251
           ++ C  CG++  +TP  RRGP G +TLCNACGL WA  V+
Sbjct: 476 ELSCHTCGVT--NTPEWRRGPNGAKTLCNACGLAWAKSVK 513

Dictyostelium discoideum (taxid: 44689)

>sp|A2YQ93|PRR37_ORYSI Two-component response regulator-like PRR37 OS=Oryza sativa subsp. indica GN=PRR37 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 139 RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFT 179
           R+A++I+FR+KRKERNF KK+RY  RK +A +  R +GQF 
Sbjct: 682 RVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q0D3B6|PRR37_ORYSJ Two-component response regulator-like PRR37 OS=Oryza sativa subsp. japonica GN=PRR37 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/41 (56%), Positives = 32/41 (78%)

Query: 139 RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFT 179
           R+A++I+FR+KRKERNF KK+RY  RK +A +  R +GQF 
Sbjct: 682 RVAAVIKFRQKRKERNFGKKVRYQSRKRLAEQRPRVRGQFV 722

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of PRR73, PRR37, PRR95, PRR59 and PPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q00858|CGPB_FUSSO Cutinase gene palindrome-binding protein OS=Fusarium solani subsp. pisi PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/43 (48%), Positives = 30/43 (69%), Gaps = 2/43 (4%)

Query: 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVRE 252
           +++ VC  CG  +  +P  R+GP GP+TLCNACGL WA K ++
Sbjct: 397 SEEYVCTDCGTLD--SPEWRKGPSGPKTLCNACGLRWAKKEKK 437

Binds a palindromic promoter element essential for induction of fungal cutinase gene.

Fusarium solani subsp. pisi (taxid: 70791)

>sp|Q93WK5|APRR7_ARATH Two-component response regulator-like APRR7 OS=Arabidopsis thaliana GN=APRR7 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/55 (47%), Positives = 39/55 (70%), Gaps = 3/55 (5%)

Query: 136 VPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQF---TSAKSNNED 187
           + QR A+L +FR+KRKER F KK+RY  RK++A +  R +GQF   T+A +++ D
Sbjct: 666 ISQREAALTKFRQKRKERCFRKKVRYQSRKKLAEQRPRVRGQFVRKTAAATDDND 720

Controls photoperiodic flowering response. Seems to be one of the component of the circadian clock. Expression of several members of the ARR-like family is controlled by circadian rhythm. The particular coordinated sequential expression of APRR9, APRR7, APRR5, APRR3 and APPR1 result to circadian waves that may be at the basis of the endogenous circadian clock.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
356526306	300	PREDICTED: GATA transcription factor 28-	0.988	0.833	0.703	1e-101
18403600	302	GATA transcription factor 28 [Arabidopsi	0.968	0.811	0.690	6e-92
15028099	302	putative flowering protein CONSTANS [Ara	0.968	0.811	0.690	1e-91
30686115	295	GATA transcription factor 24 [Arabidopsi	0.972	0.833	0.666	6e-88
297847530	302	hypothetical protein ARALYDRAFT_892135 [	0.988	0.827	0.685	2e-87
449447986	299	PREDICTED: GATA transcription factor 24-	0.964	0.816	0.640	1e-86
449491798	303	PREDICTED: GATA transcription factor 24-	0.964	0.805	0.640	2e-86
18402914	297	GATA transcription factor 24 [Arabidopsi	0.972	0.828	0.661	2e-86
21537322	297	flowering protein CONSTANS, putative [Ar	0.972	0.828	0.661	3e-86
225443335	299	PREDICTED: GATA transcription factor 28-	0.964	0.816	0.680	3e-86

>gi|356526306|ref|XP_003531759.1| PREDICTED: GATA transcription factor 28-like [Glycine max]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/263 (70%), Positives = 218/263 (82%), Gaps = 13/263 (4%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHE---LHHISNGDVMDDEHDEG--NGVGESEAMEGD 57
           HG + ++ ++D QH IH V YV EHE   LHHISNG+ +DD+H++G     G SE+MEG+
Sbjct: 5   HGGDSRIHITDGQHPIH-VPYVQEHEHHGLHHISNGNGIDDDHNDGGDTNCGGSESMEGE 63

Query: 58  APSDPGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPST 112
            PS+ G+L DN AV      + GDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGRE+P T
Sbjct: 64  VPSNHGNLPDNHAVMMDQGGDSGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREIPPT 123

Query: 113 TPAIPIANNQNNRGLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQ 172
            PA+P++ N NNRG  GTPQ+ SVPQRLASLIRFREKRKERN++KKIRYTVRKEVALRMQ
Sbjct: 124 MPAMPVSPNHNNRGYTGTPQKFSVPQRLASLIRFREKRKERNYDKKIRYTVRKEVALRMQ 183

Query: 173 RNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGP 232
           RNKGQFTS+KSNN++SAS  ++WG +++W  D +GSQ QDIVCRHCGISEKSTPMMRRGP
Sbjct: 184 RNKGQFTSSKSNNDESASNATNWGMDENWTADNSGSQQQDIVCRHCGISEKSTPMMRRGP 243

Query: 233 EGPRTLCNACGLMWANK--VREL 253
           EGPRTLCNACGLMWANK  +R+L
Sbjct: 244 EGPRTLCNACGLMWANKGILRDL 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18403600|ref|NP_564593.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|42571823|ref|NP_974002.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|71660840|sp|Q8H1G0.1|GAT28_ARATH RecName: Full=GATA transcription factor 28; AltName: Full=Protein TIFY 2A; AltName: Full=ZIM-like 2 protein gi|23297318|gb|AAN12940.1| putative flowering protein CONSTANS [Arabidopsis thaliana] gi|38603660|dbj|BAD02931.1| GATA-type zinc finger protein [Arabidopsis thaliana] gi|332194567|gb|AEE32688.1| GATA transcription factor 28 [Arabidopsis thaliana] gi|332194568|gb|AEE32689.1| GATA transcription factor 28 [Arabidopsis thaliana]

 Score =  342 bits (878), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 176/255 (69%), Positives = 202/255 (79%), Gaps = 10/255 (3%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSD 61
           HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS 
Sbjct: 5   HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSH 62

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 63  PGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 122

Query: 117 PIANNQNNR--GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 174
             + +QNNR   LPGTPQR S+PQRLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRN
Sbjct: 123 LGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRN 182

Query: 175 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 234
           KGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 183 KGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAG 242

Query: 235 PRTLCNACGLMWANK 249
           PRTLCNACGLMWANK
Sbjct: 243 PRTLCNACGLMWANK 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15028099|gb|AAK76580.1| putative flowering protein CONSTANS [Arabidopsis thaliana]

 Score =  341 bits (875), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 176/255 (69%), Positives = 201/255 (78%), Gaps = 10/255 (3%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSD 61
           HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS 
Sbjct: 5   HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSH 62

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 63  PGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 122

Query: 117 PIANNQNNR--GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 174
             + +QNNR   LPGTPQR S+PQRLASL+RFREKRK RNF KKIRYTVRKEVALRMQRN
Sbjct: 123 LGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFGKKIRYTVRKEVALRMQRN 182

Query: 175 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 234
           KGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 183 KGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAG 242

Query: 235 PRTLCNACGLMWANK 249
           PRTLCNACGLMWANK
Sbjct: 243 PRTLCNACGLMWANK 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30686115|ref|NP_850618.1| GATA transcription factor 24 [Arabidopsis thaliana] gi|14596059|gb|AAK68757.1| Unknown protein [Arabidopsis thaliana] gi|17978695|gb|AAL47341.1| unknown protein [Arabidopsis thaliana] gi|332642950|gb|AEE76471.1| GATA transcription factor 24 [Arabidopsis thaliana]

 Score =  329 bits (844), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 172/258 (66%), Positives = 197/258 (76%), Gaps = 12/258 (4%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNRGLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQ 177
            + +QNNRGL GTPQRLSVPQRLASL+RFREKRK RNF+K IRYTVRKEVALRMQR KGQ
Sbjct: 120 GSPHQNNRGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKKGQ 179

Query: 178 FTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGPRT 237
           FTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GPRT
Sbjct: 180 FTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGPRT 239

Query: 238 LCNACGLMWANK--VREL 253
           LCNACGLMWANK  +R+L
Sbjct: 240 LCNACGLMWANKGTLRDL 257

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297847530|ref|XP_002891646.1| hypothetical protein ARALYDRAFT_892135 [Arabidopsis lyrata subsp. lyrata] gi|297337488|gb|EFH67905.1| hypothetical protein ARALYDRAFT_892135 [Arabidopsis lyrata subsp. lyrata]

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 179/261 (68%), Positives = 203/261 (77%), Gaps = 11/261 (4%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEH-DEGNGVGESEAMEGDAPSD 61
           HGSN +MQ   E     HV Y   H LHHI NG  M D+H D+GN  G SE +E D PS 
Sbjct: 5   HGSNSRMQHIGEAQDPMHVQY-EHHALHHIHNGSGMVDDHADDGNAGGMSEGVETDIPSH 63

Query: 62  PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
           PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct: 64  PGNITDNRGEVVDHGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 123

Query: 117 PIANNQNNR--GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRN 174
             + +QNNR   LPGTPQR S+PQRLASL+RFREKRK RNF+KKIRYTVRKEVALRMQRN
Sbjct: 124 LGSPHQNNRISSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRN 183

Query: 175 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 234
           KGQFTSAKSNN+++ASA SSW SNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct: 184 KGQFTSAKSNNDEAASAGSSWASNQTWAIEGSEAQHQEISCRHCGIGEKSTPMMRRGPAG 243

Query: 235 PRTLCNACGLMWANK--VREL 253
           PRTLCNACGLMWANK  +R+L
Sbjct: 244 PRTLCNACGLMWANKGALRDL 264

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447986|ref|XP_004141747.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 169/264 (64%), Positives = 200/264 (75%), Gaps = 20/264 (7%)

Query: 3   HGSNPQMQMSDEQHAIH--HVNYVPEHELHHISNGDVMDDEHD-EGNGVGESEAMEGDAP 59
           H S+ +M +   QH++H   V     H+LH++SNG+ + DEH+ EG+G+     +E +  
Sbjct: 5   HPSDGRMHIGHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGI---MVVEREVQ 61

Query: 60  SDPGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTP 114
           SD G L++NR V      E  DQLTLS+QGQVYVFDSVSPEKVQAVLLLLGGREVP   P
Sbjct: 62  SDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVP 121

Query: 115 AIPIANNQNNR---------GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRK 165
           +IPI N  N+R          L   P RLSVPQRLASLIRFREKRKERNF+KKIRYTVRK
Sbjct: 122 SIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRK 181

Query: 166 EVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKST 225
           EVALRMQRNKGQFTS+K  +EDS+ A++SW  N+SW+ D NGSQ Q+I+CRHCGISEKST
Sbjct: 182 EVALRMQRNKGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKST 241

Query: 226 PMMRRGPEGPRTLCNACGLMWANK 249
           PMMRRGP+GPRTLCNACGLMWANK
Sbjct: 242 PMMRRGPDGPRTLCNACGLMWANK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449491798|ref|XP_004159006.1| PREDICTED: GATA transcription factor 24-like [Cucumis sativus]

 Score =  325 bits (832), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 169/264 (64%), Positives = 200/264 (75%), Gaps = 20/264 (7%)

Query: 3   HGSNPQMQMSDEQHAIH--HVNYVPEHELHHISNGDVMDDEHD-EGNGVGESEAMEGDAP 59
           H S+ +M +   QH++H   V     H+LH++SNG+ + DEH+ EG+G+     +E +  
Sbjct: 5   HPSDGRMHIGHAQHSMHTQSVQEQEHHDLHYMSNGNGLADEHENEGHGI---MVVEREVQ 61

Query: 60  SDPGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTP 114
           SD G L++NR V      E  DQLTLS+QGQVYVFDSVSPEKVQAVLLLLGGREVP   P
Sbjct: 62  SDHGDLAENRGVMVDRGGENCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVP 121

Query: 115 AIPIANNQNNR---------GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRK 165
           +IPI N  N+R          L   P RLSVPQRLASLIRFREKRKERNF+KKIRYTVRK
Sbjct: 122 SIPITNQPNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRK 181

Query: 166 EVALRMQRNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKST 225
           EVALRMQRNKGQFTS+K  +EDS+ A++SW  N+SW+ D NGSQ Q+I+CRHCGISEKST
Sbjct: 182 EVALRMQRNKGQFTSSKPIHEDSSLAMASWEQNESWSSDGNGSQQQEILCRHCGISEKST 241

Query: 226 PMMRRGPEGPRTLCNACGLMWANK 249
           PMMRRGP+GPRTLCNACGLMWANK
Sbjct: 242 PMMRRGPDGPRTLCNACGLMWANK 265

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402914|ref|NP_566676.1| GATA transcription factor 24 [Arabidopsis thaliana] gi|71660846|sp|Q8GXL7.2|GAT24_ARATH RecName: Full=GATA transcription factor 24; AltName: Full=Protein TIFY 2B; AltName: Full=ZIM-like 1 protein gi|9280218|dbj|BAB01708.1| unnamed protein product [Arabidopsis thaliana] gi|38603658|dbj|BAD02930.1| GATA-type zinc finger protein [Arabidopsis thaliana] gi|332642949|gb|AEE76470.1| GATA transcription factor 24 [Arabidopsis thaliana]

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 197/260 (75%), Gaps = 14/260 (5%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNR--GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNK 175
            + +QNNR  GL GTPQRLSVPQRLASL+RFREKRK RNF+K IRYTVRKEVALRMQR K
Sbjct: 120 GSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKK 179

Query: 176 GQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGP 235
           GQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GP
Sbjct: 180 GQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGP 239

Query: 236 RTLCNACGLMWANK--VREL 253
           RTLCNACGLMWANK  +R+L
Sbjct: 240 RTLCNACGLMWANKGTLRDL 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537322|gb|AAM61663.1| flowering protein CONSTANS, putative [Arabidopsis thaliana]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 172/260 (66%), Positives = 197/260 (75%), Gaps = 14/260 (5%)

Query: 3   HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
           HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct: 5   HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENGMMDDHADG---GMDEGVETDIPSHP 59

Query: 63  GSLSDNRAVS-----EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
           G+ +DNR        E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct: 60  GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query: 118 IANNQNNR--GLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNK 175
            + +QNNR  GL GTPQRLSVPQRLASL+RFREKRK RNF+K IRYTVRKEVALRMQR K
Sbjct: 120 GSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKK 179

Query: 176 GQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGP 235
           GQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GP
Sbjct: 180 GQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGP 239

Query: 236 RTLCNACGLMWANK--VREL 253
           RTLCNACGLMWANK  +R+L
Sbjct: 240 RTLCNACGLMWANKGTLRDL 259

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443335|ref|XP_002263707.1| PREDICTED: GATA transcription factor 28-like [Vitis vinifera]

 Score =  323 bits (829), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 179/263 (68%), Positives = 204/263 (77%), Gaps = 19/263 (7%)

Query: 3   HGSNPQMQMSDEQH-AIHHVNYVPEHE--LHHISNGDVMDDEHDEGNGVGESEAMEGDAP 59
           HG+N  +   D QH  IH  +Y+ EH+  +HH+SNG  MD++HDEG      E MEGD  
Sbjct: 5   HGNNAGIHRPDGQHHPIHVQHYMQEHDHGMHHMSNGGSMDEDHDEGG---SGEGMEGDVQ 61

Query: 60  SDPGSLSDNRAV-------SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPST 112
           +DPG+L+D+R         S+  +QLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVP T
Sbjct: 62  ADPGNLADSRGALTVQPGGSDNQNQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPPT 121

Query: 113 TPAIPIANNQNNRGLPGTPQRLSVPQRLASLIRFREKRKERNFEKKIRYTVRKEVALRMQ 172
            PA+ IA +  NR LPGTPQR +VP RLASLIRFREKRKERNF+KKIRYTVRKEVALRMQ
Sbjct: 122 MPALSIAGH--NRELPGTPQRYNVPHRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQ 179

Query: 173 RNKGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGP 232
           RNKGQFTS+KSN++DSAS    W S  SW    NG  NQ+IVCRHCGISEKSTPMMRRGP
Sbjct: 180 RNKGQFTSSKSNHDDSASTTPGWES--SWGMAGNGPINQEIVCRHCGISEKSTPMMRRGP 237

Query: 233 EGPRTLCNACGLMWANK--VREL 253
           EGPRTLCNACGLMWANK  +R+L
Sbjct: 238 EGPRTLCNACGLMWANKGTLRDL 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2017582	302	ZML2 "ZIM-LIKE 2" [Arabidopsis	0.968	0.811	0.635	7.9e-78
TAIR|locus:505006360	297	ZML1 "ZIM-like 1" [Arabidopsis	0.972	0.828	0.615	4e-74
DICTYBASE|DDB_G0270756	1006	gtaG "GATA zinc finger domain-	0.150	0.037	0.6	1.3e-06
CGD|CAL0005605	442	orf19.1577 [Candida albicans (	0.241	0.138	0.439	5.8e-06
UNIPROTKB|Q5ALK1	442	CaO19.1577 "Putative uncharact	0.241	0.138	0.439	5.8e-06
TAIR|locus:2145259	331	GATA12 "GATA transcription fac	0.118	0.090	0.562	7.3e-06
DICTYBASE|DDB_G0295707	695	gtaP "GATA zinc finger domain-	0.276	0.100	0.376	8.6e-06
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.166	0.281	0.477	1.3e-05
SGD|S000004744	560	GAT2 "Protein containing GATA	0.284	0.128	0.375	3.7e-05
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.284	0.244	0.364	9.3e-05

TAIR|locus:2017582 ZML2 "ZIM-LIKE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 783 (280.7 bits), Expect = 7.9e-78, P = 7.9e-78
 Identities = 162/255 (63%), Positives = 186/255 (72%)

Query:     3 HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVM-DDEHDEGNGVGESEAMEGDAPSD 61
             HGSN +M + + Q  +H V +   H LHHI NG  M DD+ D+GN  G SE +E D PS 
Sbjct:     5 HGSNARMHIREAQDPMH-VQF-EHHALHHIHNGSGMVDDQADDGNAGGMSEGVETDIPSH 62

Query:    62 PGSLSDNRAV-----SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAI 116
             PG+++DNR       SE GDQLTLSFQGQVYVFDSV PEKVQAVLLLLGGRE+P   P  
Sbjct:    63 PGNVTDNRGEVVDRGSEQGDQLTLSFQGQVYVFDSVLPEKVQAVLLLLGGRELPQAAPPG 122

Query:   117 PIANNQNNR--GLPGTPQRLSVPQRLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRN 174
               + +QNNR   LPGTPQR S+PQRLASL                 YTVRKEVALRMQRN
Sbjct:   123 LGSPHQNNRVSSLPGTPQRFSIPQRLASLVRFREKRKGRNFDKKIRYTVRKEVALRMQRN 182

Query:   175 KGQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEG 234
             KGQFTSAKSNN+++ASA SSWGSNQ+WA + + +Q+Q+I CRHCGI EKSTPMMRRGP G
Sbjct:   183 KGQFTSAKSNNDEAASAGSSWGSNQTWAIESSEAQHQEISCRHCGIGEKSTPMMRRGPAG 242

Query:   235 PRTLCNACGLMWANK 249
             PRTLCNACGLMWANK
Sbjct:   243 PRTLCNACGLMWANK 257

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:505006360 ZML1 "ZIM-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
 Identities = 160/260 (61%), Positives = 183/260 (70%)

Query:     3 HGSNPQMQMSDEQHAIHHVNYVPEHELHHISNGDVMDDEHDEGNGVGESEAMEGDAPSDP 62
             HG N +M +   Q+ +H V Y  +H LHHI N + M D+H +G   G  E +E D PS P
Sbjct:     5 HGRNGRMHIGVAQNPMH-VQY-EDHGLHHIDNENSMMDDHADG---GMDEGVETDIPSHP 59

Query:    63 GSLSDNRA--VS---EIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGGREVPSTTPAIP 117
             G+ +DNR   V    E GDQLTLSFQGQVYVFD VSPEKVQAVLLLLGGREVP T P   
Sbjct:    60 GNSADNRGEVVDRGIENGDQLTLSFQGQVYVFDRVSPEKVQAVLLLLGGREVPHTLPTTL 119

Query:   118 IANNQNNR--GLPGTPQRLSVPQRLASLXXXXXXXXXXXXXXXXXYTVRKEVALRMQRNK 175
              + +QNNR  GL GTPQRLSVPQRLASL                 YTVRKEVALRMQR K
Sbjct:   120 GSPHQNNRVLGLSGTPQRLSVPQRLASLLRFREKRKGRNFDKTIRYTVRKEVALRMQRKK 179

Query:   176 GQFTSAKSNNEDSASAISSWGSNQSWAGDVNGSQNQDIVCRHCGISEKSTPMMRRGPEGP 235
             GQFTSAKS+N+DS S  S WGSNQSWA +   +Q  +++CRHCG SEKSTPMMRRGP+GP
Sbjct:   180 GQFTSAKSSNDDSGSTGSDWGSNQSWAVEGTETQKPEVLCRHCGTSEKSTPMMRRGPDGP 239

Query:   236 RTLCNACGLMWANK--VREL 253
             RTLCNACGLMWANK  +R+L
Sbjct:   240 RTLCNACGLMWANKGTLRDL 259

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

DICTYBASE|DDB_G0270756 gtaG "GATA zinc finger domain-containing protein 7" [Dictyostelium discoideum (taxid:44689)]

 Score = 129 (50.5 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
 Identities = 24/40 (60%), Positives = 28/40 (70%)

Query:   213 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVRE 252
             + C +CG   K+TP  RRGP GP TLCNACGL +A K RE
Sbjct:   840 LYCHNCGT--KNTPEWRRGPSGPATLCNACGLAYAKKQRE 877

GO:0030587 "sorocarp development" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

CGD|CAL0005605 orf19.1577 [Candida albicans (taxid:5476)]

 Score = 130 (50.8 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query:   189 ASAISSWGSNQSWAGDVNG--SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 246
             A  +S+  SN +  G++N   S   +I C+HC   E  TP  RRGPEG RTLCNACGL +
Sbjct:   355 AQTLSAVTSNLT-NGNLNTELSAKPEITCQHCCSQE--TPEWRRGPEGSRTLCNACGLFY 411

Query:   247 ANKVRE 252
             +  +++
Sbjct:   412 SKLIKK 417

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5ALK1 CaO19.1577 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 130 (50.8 bits), Expect = 5.8e-06, P = 5.8e-06
 Identities = 29/66 (43%), Positives = 41/66 (62%)

Query:   189 ASAISSWGSNQSWAGDVNG--SQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 246
             A  +S+  SN +  G++N   S   +I C+HC   E  TP  RRGPEG RTLCNACGL +
Sbjct:   355 AQTLSAVTSNLT-NGNLNTELSAKPEITCQHCCSQE--TPEWRRGPEGSRTLCNACGLFY 411

Query:   247 ANKVRE 252
             +  +++
Sbjct:   412 SKLIKK 417

GO:0005575 "cellular_component" evidence=ND

TAIR|locus:2145259 GATA12 "GATA transcription factor 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 100 (40.3 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query:   215 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 246
             C HC  ++K TP  R GP GP+TLCNACG+ +
Sbjct:   221 CLHCA-TDK-TPQWRTGPMGPKTLCNACGVRY 250

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

DICTYBASE|DDB_G0295707 gtaP "GATA zinc finger domain-containing protein 16" [Dictyostelium discoideum (taxid:44689)]

 Score = 130 (50.8 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
 Identities = 29/77 (37%), Positives = 40/77 (51%)

Query:   180 SAKSNNEDSASAISSWGSNQSWAGDVNGSQNQ-----DIVCRHCGISEKSTPMMRRGPEG 234
             S   N  +S    SS G+N + A      +       ++ C  CG++  +TP  RRGP G
Sbjct:   439 SKGGNTNNSGGGSSSGGTNDTQAKKPARRRKMRYGGTELSCHTCGVT--NTPEWRRGPNG 496

Query:   235 PRTLCNACGLMWANKVR 251
              +TLCNACGL WA  V+
Sbjct:   497 AKTLCNACGLAWAKSVK 513

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 103 (41.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
 Identities = 21/44 (47%), Positives = 27/44 (61%)

Query:   210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVREL 253
             N+   C  CG S+  TP+ R GP GP++LCNACG+    K R L
Sbjct:    38 NEKKSCAICGTSK--TPLWRGGPAGPKSLCNACGIRNRKKRRTL 79

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

SGD|S000004744 GAT2 "Protein containing GATA family zinc finger motifs" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 116 (45.9 bits), Expect = 3.7e-05, Sum P(2) = 3.7e-05
 Identities = 30/80 (37%), Positives = 43/80 (53%)

Query:   171 MQRNKGQFTSAK--SNNEDSASAISSWGSNQSWAGDVNGSQNQDIV--CRHCGISEKSTP 226
             +QR     TS+   +N+   A+A+S+  +  +   D      + I+  C HCG  E  TP
Sbjct:   426 IQRQPTLTTSSHFINNSNPGAAAVST--TTPAANSDEKNPNAKKIIEFCFHCG--ETETP 481

Query:   227 MMRRGPEGPRTLCNACGLMW 246
               R+GP G RTLCNACGL +
Sbjct:   482 EWRKGPYGTRTLCNACGLFY 501

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISA

GO:0000981 "sequence-specific DNA binding RNA polymerase II transcription factor activity" evidence=ISA

GO:0046872 "metal ion binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 9.3e-05, P = 9.3e-05
 Identities = 27/74 (36%), Positives = 38/74 (51%)

Query:   180 SAKSNNEDSASAIS-SWGSNQSWAGDVNGSQNQDIVCRHCGISEK-STPMMRRGPEGPRT 237
             +A  NN  S SA   S G +    G   G     ++ R C   +  STP+ R GP GP++
Sbjct:   115 TAPYNNVPSFSANKPSRGCSGGGGGGGGGGGGDSLLARRCANCDTTSTPLWRNGPRGPKS 174

Query:   238 LCNACGLMWANKVR 251
             LCNACG+ +  + R
Sbjct:   175 LCNACGIRFKKEER 188

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8H1G0	GAT28_ARATH	No assigned EC number	0.6901	0.9683	0.8112	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam06203	45	pfam06203, CCT, CCT motif	3e-19
pfam00320	36	pfam00320, GATA, GATA zinc finger	4e-12
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	4e-12
pfam06200	36	pfam06200, tify, tify domain	7e-11
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	1e-10
smart00979	36	smart00979, TIFY, This short possible domain is fo	4e-10
pfam09425	27	pfam09425, CCT_2, Divergent CCT motif	4e-05

>gnl|CDD|203407 pfam06203, CCT, CCT motif

 Score = 78.0 bits (193), Expect = 3e-19
 Identities = 23/45 (51%), Positives = 29/45 (64%)

Query: 139 RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAKS 183
           R A+L+R++EKRK R F+KKIRY  RK VA    R KG+F     
Sbjct: 1   REAALLRYKEKRKTRKFDKKIRYASRKAVAESRPRVKGRFVKQSE 45

This short motif is found in a number of plant proteins. It is rich in basic amino acids and has been called a CCT motif after Co, Col and Toc1. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Toc1 mutants have been identified in this region. Length = 45

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 58.8 bits (143), Expect = 4e-12
 Identities = 19/35 (54%), Positives = 23/35 (65%), Gaps = 2/35 (5%)

Query: 215 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249
           C +CG     TP+ RRGP+G RTLCNACGL +   
Sbjct: 1   CSNCG--TTKTPLWRRGPDGNRTLCNACGLYYRKH 33

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 59.0 bits (143), Expect = 4e-12
 Identities = 19/40 (47%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249
                C +CG +E  TP+ RRGP G +TLCNACGL +   
Sbjct: 1   GSGRSCSNCGTTE--TPLWRRGPSGNKTLCNACGLYYKKH 38

Length = 52

>gnl|CDD|203405 pfam06200, tify, tify domain

 Score = 55.6 bits (135), Expect = 7e-11
 Identities = 15/31 (48%), Positives = 19/31 (61%)

Query: 76  DQLTLSFQGQVYVFDSVSPEKVQAVLLLLGG 106
            QLT+ + GQV VFD V PEK Q ++ L   
Sbjct: 6   AQLTIFYGGQVCVFDDVPPEKAQEIMRLASR 36

This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs. Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 55.1 bits (133), Expect = 1e-10
 Identities = 19/36 (52%), Positives = 22/36 (61%), Gaps = 2/36 (5%)

Query: 214 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249
            C +CG    +TP+ RRGP G  TLCNACGL W   
Sbjct: 1   ACSNCG--TTTTPLWRRGPSGGSTLCNACGLYWKKH 34

Length = 54

>gnl|CDD|198047 smart00979, TIFY, This short possible domain is found in a variety of plant transcription factors that contain GATA domains as well as other motifs

 Score = 53.4 bits (129), Expect = 4e-10
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 72  SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLGG 106
            E   QLT+ + G V VFD V PEK Q ++ L G 
Sbjct: 2   PEGSQQLTIFYGGSVCVFDDVPPEKAQEIMSLAGN 36

Although previously known as the Zim domain this is now called the tify domain after its most conserved amino acids. TIFY proteins can be further classified into two groups depending on the presence (group I) or absence (group II) of a C2C2-GATA domain. Functional annotation of these proteins is still poor, but several screens revealed a link between TIFY proteins of group II and jasmonic acid-related stress response. Length = 36

>gnl|CDD|117965 pfam09425, CCT_2, Divergent CCT motif

 Score = 39.1 bits (92), Expect = 4e-05
 Identities = 13/26 (50%), Positives = 14/26 (53%), Gaps = 1/26 (3%)

Query: 138 QRLASLIRFREKRKERNFEKKIRYTV 163
            R ASL RF EKRK+R       Y V
Sbjct: 3   ARKASLQRFLEKRKDRLV-SAAPYQV 27

This short motif is found in a number of plant proteins. It appears to be related to the N-terminal half of the CCT motif. The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif. Length = 27

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF06200	36	tify: tify domain; InterPro: IPR010399 The tify do	99.69
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.47
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.46
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.45
PF06203	45	CCT: CCT motif; InterPro: IPR010402 The CCT (CONST	99.4
PF09425	27	CCT_2: Divergent CCT motif; InterPro: IPR018467 Th	98.55
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.41
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	97.6
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	91.57

>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants)

Probab=99.69  E-value=2.9e-17  Score=107.34  Aligned_cols=34  Identities=47%  Similarity=0.705  Sum_probs=32.2

Q ss_pred             CCCCCceeEEEccEEEeeCCCCHHHHHHHHHHhC
Q 025411           72 SEIGDQLTLSFQGQVYVFDSVSPEKVQAVLLLLG  105 (253)
Q Consensus        72 ~~~~~QLTIfY~G~V~VfD~v~~eKaq~Im~lA~  105 (253)
                      ++.++||||||+|+|+|||+||+|||++||+||+
T Consensus         2 ~~~~~qLTIfY~G~V~Vfd~v~~~Ka~~im~lA~   35 (36)
T PF06200_consen    2 SPETAQLTIFYGGQVCVFDDVPPDKAQEIMLLAS   35 (36)
T ss_pred             CCCCCcEEEEECCEEEEeCCCCHHHHHHHHHHhc
Confidence            4678999999999999999999999999999997

It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.47  E-value=1.1e-14  Score=95.08  Aligned_cols=35  Identities=54%  Similarity=1.153  Sum_probs=27.9

Q ss_pred             ccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411          215 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR  251 (253)
Q Consensus       215 C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~  251 (253)
                      |.+|++  +.||+||+||.|..+|||||||+|+|..+
T Consensus         1 C~~C~t--t~t~~WR~~~~g~~~LCn~Cg~~~kk~~~   35 (36)
T PF00320_consen    1 CSNCGT--TETPQWRRGPNGNRTLCNACGLYYKKYGK   35 (36)
T ss_dssp             -TTT----ST-SSEEEETTSEE-EEHHHHHHHHHHSS
T ss_pred             CcCCcC--CCCchhhcCCCCCCHHHHHHHHHHHHhCC
Confidence            899999  78999999999998899999999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.46  E-value=2.6e-14  Score=101.41  Aligned_cols=36  Identities=53%  Similarity=1.186  Sum_probs=33.1

Q ss_pred             cccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411          214 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR  251 (253)
Q Consensus       214 ~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~  251 (253)
                      .|++|++  +.||+||+||+|..+|||||||+|+|...
T Consensus         1 ~C~~C~~--~~Tp~WR~g~~~~~~LCNaCgl~~~k~~~   36 (54)
T cd00202           1 ACSNCGT--TTTPLWRRGPSGGSTLCNACGLYWKKHGV   36 (54)
T ss_pred             CCCCCCC--CCCcccccCCCCcchHHHHHHHHHHhcCC
Confidence            4999999  78999999999989999999999998753

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.45  E-value=3.2e-14  Score=100.09  Aligned_cols=40  Identities=45%  Similarity=0.961  Sum_probs=35.8

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhcc
Q 025411          211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVRE  252 (253)
Q Consensus       211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~~  252 (253)
                      ....|++|++  +.||+||+||.|+++|||||||+|+|..+.
T Consensus         2 ~~~~C~~C~~--~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~   41 (52)
T smart00401        2 SGRSCSNCGT--TETPLWRRGPSGNKTLCNACGLYYKKHGGL   41 (52)
T ss_pred             CCCCcCCCCC--CCCCccccCCCCCCcEeecccHHHHHcCCC
Confidence            3568999999  789999999999989999999999987653

>PF06203 CCT: CCT motif; InterPro: IPR010402 The CCT (CONSTANS, CO-like, and TOC1) domain is a highly conserved basic module of ~43 amino acids, which is found near the C terminus of plant proteins often involved in light signal transduction

Probab=99.40  E-value=1.1e-13  Score=94.68  Aligned_cols=44  Identities=57%  Similarity=0.801  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHhhhhcccccccchhhhHHHHHHhHhhcCccccCC
Q 025411          139 RLASLIRFREKRKERNFEKKIRYTVRKEVALRMQRNKGQFTSAK  182 (253)
Q Consensus       139 R~asl~Rf~eKRk~R~~~k~~~Y~~Rk~~A~~r~R~KGrf~ssk  182 (253)
                      |+++|+||+|||+.|.|.|+|+|++||.+|+.++|++|+|++.+
T Consensus         1 R~~~l~Ry~~Kr~~R~f~kkirY~~Rk~~A~~R~RvkGRFvk~~   44 (45)
T PF06203_consen    1 REEKLQRYREKRKRRNFEKKIRYESRKAVADKRPRVKGRFVKKS   44 (45)
T ss_pred             CHHHHHHHHHHHHhhcccccCCcchHHHHHhhCCccCCcccCCC
Confidence            68999999999999999999999999999999999999999864

The CCT domain is found in association with other domains, such as the B-box zinc finger, the GATA-type zinc finger, the ZIM motif or the response regulatory domain. The CCT domain contains a putative nuclear localisation signal within the second half of the CCT motif and has been shown to be involved in nuclear localization and probably also has a role in protein-protein interaction [].; GO: 0005515 protein binding

>PF09425 CCT_2: Divergent CCT motif; InterPro: IPR018467 The short CCT (CO, COL, TOC1) motif is found in a number of plant proteins, including Constans (CO), Constans-like (COL) and TOC1

Probab=98.55  E-value=2.8e-08  Score=60.98  Aligned_cols=25  Identities=52%  Similarity=0.549  Sum_probs=10.0

Q ss_pred             HHHHHHHHHHHHhhhhcccccccchh
Q 025411          137 PQRLASLIRFREKRKERNFEKKIRYT  162 (253)
Q Consensus       137 ~~R~asl~Rf~eKRk~R~~~k~~~Y~  162 (253)
                      ++|++||+||+||||+|+.. +.+|.
T Consensus         2 ~aRK~SLqRFLeKRK~R~~~-~~PY~   26 (27)
T PF09425_consen    2 IARKASLQRFLEKRKDRLAA-KSPYQ   26 (27)
T ss_dssp             ----HHHHHHHHHH------------
T ss_pred             chHHHHHHHHHHHHHHhhcc-CCCCC
Confidence            58999999999999999988 57885

The CCT motif is about 45 amino acids long and contains a putative nuclear localisation signal within the second half of the CCT motif []. The CCT motif is found in the Arabidopsis circadian rhythm protein TOC1, an autoregulatory response regulator homologue the controls the photoperiodic flowering through its clock function []. ; GO: 0005515 protein binding; PDB: 3OGK_V 3OGL_S 3OGM_W.

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.41  E-value=9.8e-08  Score=82.66  Aligned_cols=36  Identities=53%  Similarity=1.159  Sum_probs=34.0

Q ss_pred             cccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411          212 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK  249 (253)
Q Consensus       212 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~  249 (253)
                      ...|.+|++  +.||+||++|.|+..|||||||+|++.
T Consensus       199 ~~~c~~~~~--~~t~~~r~~~~g~~~~cnacgl~~k~~  234 (340)
T KOG1601|consen  199 LRQCSNCGT--TKTPLWRRGPEGPKSLCNACGLRYKKG  234 (340)
T ss_pred             CcccCCCCC--CCCcceecCCCCCccccccchhhhhhc
Confidence            589999999  789999999999999999999999986

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=97.60  E-value=1.4e-05  Score=78.97  Aligned_cols=35  Identities=49%  Similarity=0.924  Sum_probs=30.7

Q ss_pred             ccccccccccccCCCCccccCCC-----CCcccchHHHHHHHh
Q 025411          211 QDIVCRHCGISEKSTPMMRRGPE-----GPRTLCNACGLMWAN  248 (253)
Q Consensus       211 ~~~~C~~C~~~~~~Tp~wR~Gp~-----G~~~LCNaCGl~~~k  248 (253)
                      ....|.+|.+  +.||+|||+..     | -.|||||||+++-
T Consensus       157 ~~~vc~Nc~t--~stPlwrR~~~~~s~~~-n~lcnaCgl~~kl  196 (498)
T COG5641         157 QPHVCSNCKT--TSTPLWRRASSESSLPG-NNLCNACGLYLKL  196 (498)
T ss_pred             ccchhccccc--cCCccccccccccccCC-ccccccccccccc
Confidence            4449999999  89999999999     6 5999999999863

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=91.57  E-value=0.35  Score=48.09  Aligned_cols=38  Identities=21%  Similarity=0.526  Sum_probs=30.5

Q ss_pred             ccccccccccccCCCCcccc-CCCC-CcccchHHHHHHHhhh
Q 025411          211 QDIVCRHCGISEKSTPMMRR-GPEG-PRTLCNACGLMWANKV  250 (253)
Q Consensus       211 ~~~~C~~C~~~~~~Tp~wR~-Gp~G-~~~LCNaCGl~~~k~~  250 (253)
                      ..+.|.+|++  |+.-+|-. ||-+ ...||--|=++|+|..
T Consensus       385 ~g~~CEsC~t--tqs~qWYsWGppnmqcrLCasCWiyWKKyg  424 (693)
T KOG3554|consen  385 DGRACESCYT--TQSLQWYSWGPPNMQCRLCASCWIYWKKYG  424 (693)
T ss_pred             CCCccccccc--ccccceeccCCCCccchhhHHHHHHHHHhc
Confidence            3679999999  78888876 5544 4489999999999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	2e-09
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	3e-08
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	2e-07
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	3e-07
3dfx_A	63	Trans-acting T-cell-specific transcription factor	2e-06

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 51.8 bits (124), Expect = 2e-09
 Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)

Query: 207 GSQN--QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 246
           GS    +   C +C ++E  T   R         CNAC +  
Sbjct: 1   GSHMNKKSFQCSNCSVTE--TIRWRNIRSKEGIQCNACFIYQ 40

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 47.8 bits (114), Expect = 3e-08
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)

Query: 210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 244
           ++   C +CG +   TP+ RR   G   LCNACGL
Sbjct: 2   SEARECVNCGATA--TPLWRRDRTG-HYLCNACGL 33

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 46.2 bits (109), Expect = 2e-07
 Identities = 20/47 (42%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 206 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVRE 252
           NG QN    C +C      TP+ RR PEG + LCNACGL        
Sbjct: 3   NGEQNGPTTCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLHGVV 46

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 213 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGL 244
             C +C      TP+ RR PEG + LCNACGL
Sbjct: 2   TTCTNCFTQT--TPLWRRNPEG-QPLCNACGL 30

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 43.5 bits (102), Expect = 2e-06
 Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 206 NGSQNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 246
           + ++     C +C  +   T + RR   G   +CNACGL +
Sbjct: 1   SAARRAGTSCANCQTTT--TTLWRRNANG-DPVCNACGLYY 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.6
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.58
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.56
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.52
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.47
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.31
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.12
3ogl_Q	21	JAZ1 incomplete degron peptide; leucine-rich repea	98.26
3ogk_Q	22	JAZ1 incomplete degron peptide; leucine rich repea	98.18

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.60  E-value=2.9e-16  Score=105.59  Aligned_cols=36  Identities=44%  Similarity=0.894  Sum_probs=32.8

Q ss_pred             ccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411          213 IVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR  251 (253)
Q Consensus       213 ~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~  251 (253)
                      ..|++|++  +.||+||+||+|+ +|||||||+|++..+
T Consensus         2 ~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~~   37 (43)
T 2vut_I            2 TTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGV   37 (43)
T ss_dssp             CCCSSSCC--CCCSCCEECTTSC-EECHHHHHHHHHHSS
T ss_pred             CcCCccCC--CCCCccccCCCCC-cccHHHHHHHHHhCC
Confidence            57999999  7899999999997 999999999988653

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.58  E-value=7.3e-16  Score=105.04  Aligned_cols=37  Identities=41%  Similarity=0.793  Sum_probs=33.4

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchHHHHHHHhhh
Q 025411          211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKV  250 (253)
Q Consensus       211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~  250 (253)
                      ....|++|++  +.||+||+||+|+ +|||||||+|++..
T Consensus         3 ~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNaCGl~~k~~~   39 (46)
T 1gnf_A            3 EARECVNCGA--TATPLWRRDRTGH-YLCNACGLYHKMNG   39 (46)
T ss_dssp             CSCCCTTTCC--CCCSSCBCCTTCC-CBCSHHHHHHHHTC
T ss_pred             CCCCCCCcCC--CCCCcCccCCCCC-ccchHHHHHHHHcC
Confidence            4568999999  7899999999997 99999999998864

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.56  E-value=1.3e-15  Score=110.16  Aligned_cols=38  Identities=32%  Similarity=0.738  Sum_probs=34.5

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchHHHHHHHhhh
Q 025411          210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKV  250 (253)
Q Consensus       210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~  250 (253)
                      .....|.+|++  +.||+||+||+|+ +|||||||+|++..
T Consensus         5 ~~~~~C~~C~t--t~Tp~WR~gp~G~-~LCNACGl~~~~~~   42 (63)
T 3dfx_A            5 RAGTSCANCQT--TTTTLWRRNANGD-PVCNACGLYYKLHN   42 (63)
T ss_dssp             CTTCCCTTTCC--SCCSSCCCCTTSC-CCCHHHHHHHHHHS
T ss_pred             CCCCcCCCcCC--CCCCccCCCCCCC-chhhHHHHHHHHcC
Confidence            45678999999  7899999999997 99999999999864

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.52  E-value=3e-15  Score=109.24  Aligned_cols=39  Identities=44%  Similarity=0.843  Sum_probs=34.8

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411          210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR  251 (253)
Q Consensus       210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~  251 (253)
                      .....|++|++  +.||+||+||+|. +|||||||+|++..+
T Consensus         7 ~~~~~C~~C~t--~~Tp~WR~gp~G~-~LCNaCGl~~~~~~~   45 (66)
T 4gat_A            7 NGPTTCTNCFT--QTTPLWRRNPEGQ-PLCNACGLFLKLHGV   45 (66)
T ss_dssp             SSSCCCTTTCC--CCCSSCEEETTTE-EECHHHHHHHHHHCS
T ss_pred             CCCCCCCCCCC--CCCCcCCcCCCCC-CccHHHHHHHHHcCC
Confidence            45689999999  7899999999996 999999999998643

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.47  E-value=1.6e-14  Score=106.73  Aligned_cols=40  Identities=20%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             cccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411          210 NQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR  251 (253)
Q Consensus       210 ~~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~  251 (253)
                      .....|++|++  +.||+||+||.+..+|||||||+|++..+
T Consensus         6 ~~~~~C~nC~t--t~Tp~WRrg~~~~g~LCNACGl~~~~~~~   45 (71)
T 2kae_A            6 KKSFQCSNCSV--TETIRWRNIRSKEGIQCNACFIYQRKYNK   45 (71)
T ss_dssp             --CCCCSSSCC--SCCSSCCCCSSSSCCCSSHHHHHHHHHHS
T ss_pred             CCCCcCCccCC--CCCCccccCCCCCCccchHHHHHHHHhCC
Confidence            46689999999  78999999544444999999999998653

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.31  E-value=7.5e-13  Score=106.13  Aligned_cols=38  Identities=32%  Similarity=0.718  Sum_probs=34.4

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411          211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR  251 (253)
Q Consensus       211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~  251 (253)
                      ....|++|++  +.||+||+||+| ++|||||||+|++..+
T Consensus        58 ~~~~C~~C~t--~~tp~WRr~~~g-~~lCNaCgl~~~~~~~   95 (115)
T 4hc9_A           58 AGTSCANCQT--TTTTLWRRNANG-DPVCNACGLYYKLHNI   95 (115)
T ss_dssp             TTCCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHHSS
T ss_pred             ccccCCCcCC--CCcceeEECCCC-CCcchHHHHHHHHhCC
Confidence            4579999999  789999999999 8999999999998754

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.12  E-value=1.7e-11  Score=98.17  Aligned_cols=36  Identities=44%  Similarity=0.843  Sum_probs=31.3

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchHHHHHHHhh
Q 025411          211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK  249 (253)
Q Consensus       211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~  249 (253)
                      ....|.||++  +.||+||+||+| .+|||||||+|++.
T Consensus         4 ~~~~C~~Cg~--~~Tp~WRr~~~g-~~lCnaCgl~~Kl~   39 (115)
T 4hc9_A            4 MGRECVNCGA--TSTPLWRRDGTG-HYLCNACGLYHKMN   39 (115)
T ss_dssp             --CCCTTTCC--SCCSSCEECTTS-CEECHHHHHHHHHH
T ss_pred             CCCCCCCCCC--ccCCcceECCCC-CCcCcchhhhhhhc
Confidence            4679999999  789999999999 69999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	7e-10
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	1e-08
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	7e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (122), Expect = 7e-10
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 3/32 (9%)

Query: 215 CRHCGISEKSTPMMRRGPEGPRTLCNACGLMW 246
           C +CG +   TP+ RR   G   LCNACGL  
Sbjct: 5   CVNCGATA--TPLWRRDRTG-HYLCNACGLYH 33

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 47.9 bits (114), Expect = 1e-08
 Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 3/36 (8%)

Query: 214 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249
            C +C      TP+ RR PEG + LCNACGL     
Sbjct: 2   TCTNCFTQT--TPLWRRNPEG-QPLCNACGLFLKLH 34

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.4 bits (102), Expect = 7e-07
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 209 QNQDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANK 249
           +    VC +C  S   T + RR P G   +CNACGL +   
Sbjct: 1   KRAGTVCSNCQTST--TTLWRRSPMG-DPVCNACGLYYKLH 38

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.66
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.63
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.54

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.5e-18  Score=108.80  Aligned_cols=37  Identities=41%  Similarity=0.806  Sum_probs=33.1

Q ss_pred             cccccccccccCCCCccccCCCCCcccchHHHHHHHhhhc
Q 025411          212 DIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKVR  251 (253)
Q Consensus       212 ~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~~  251 (253)
                      .+.|++|++  +.||+||+||+| ++|||||||+|++..+
T Consensus         2 ~r~C~~Cgt--t~Tp~WR~gp~G-~~LCNACGl~~r~~G~   38 (39)
T d1y0ja1           2 ARECVNCGA--TATPLWRRDRTG-HYLCNACGLYHKMNGQ   38 (39)
T ss_dssp             CCCCSSSCC--CCCSCCEECTTS-CEECSSHHHHHHHSCC
T ss_pred             cCCCCCCCC--CCCcccccCCCC-CEeeHHhHHHHHHhCC
Confidence            468999999  789999999999 6999999999987643

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.63  E-value=4.2e-17  Score=107.08  Aligned_cols=34  Identities=47%  Similarity=0.988  Sum_probs=31.4

Q ss_pred             cccccccccCCCCccccCCCCCcccchHHHHHHHhhh
Q 025411          214 VCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKV  250 (253)
Q Consensus       214 ~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~  250 (253)
                      .|+||++  +.||+||+||+| ++|||||||+|++..
T Consensus         2 ~C~nC~t--t~Tp~WRr~~~G-~~lCNACGl~~k~~g   35 (42)
T d2vuti1           2 TCTNCFT--QTTPLWRRNPEG-QPLCNACGLFLKLHG   35 (42)
T ss_dssp             CCSSSCC--CCCSCCEECTTS-CEECHHHHHHHHHHS
T ss_pred             cCCCCCC--CCCccceeCCCC-CCchhhhhHHHHHcC
Confidence            6999999  789999999999 799999999998764

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.54  E-value=8.7e-16  Score=110.24  Aligned_cols=37  Identities=38%  Similarity=0.847  Sum_probs=33.1

Q ss_pred             ccccccccccccCCCCccccCCCCCcccchHHHHHHHhhh
Q 025411          211 QDIVCRHCGISEKSTPMMRRGPEGPRTLCNACGLMWANKV  250 (253)
Q Consensus       211 ~~~~C~~C~~~~~~Tp~wR~Gp~G~~~LCNaCGl~~~k~~  250 (253)
                      ....|.||++  +.||+||+||+| .+|||||||+|++..
T Consensus         3 ~g~~C~nCgt--~~Tp~WRr~~~G-~~lCNACGl~~~~~~   39 (66)
T d3gata_           3 AGTVCSNCQT--STTTLWRRSPMG-DPVCNACGLYYKLHQ   39 (66)
T ss_dssp             TTCCCTTTCC--CCCSSEEECTTS-CEEEHHHHHHHHHHC
T ss_pred             CCCCCCCCCC--CCCcccccCCCC-CcccchhHHHHHHhC
Confidence            3568999999  789999999999 699999999998754