Citrus Sinensis ID: 025417

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
MFSFVSKRLSLMMMTKVCCFQRNFSSALPPLVPVKLPSKMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQHSEVKLVFQ
ccHHHHHHHHHHHHHcccccccccccccccccccccccccEEEEEEEEccccccHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHcccccccEEEEcccccccEEcccccccccccccEEEccccccEEEEEEEccccEEEEEccccccccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccccccccccccEEEEEc
cccHHHHHHHHHHHHccccHcccccccccccccccccccccEEEEEEEccccccHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccHcHEEEEEccccccEccccccccccccccEEEEEccccEEEEEEEccccEEEEEEEccccccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccEEEEEEcccccEEEEEEc
MFSFVSKRLSLMMMTKVCcfqrnfssalpplvpvklpskmethfwyvlpdevksESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQtncqvnprslkfkktiygkpevdwengdkwcppplhfnishtsslvacgvtvnvpigiDVEEKQRRLKNKILAFAKryfspdevKLLTAISDPEIQRQELIKLWTLKEAYVKAVGrgfsaapfntFTIRARVVKMggfhhfdtqhsevklvfq
MFSFVSKRLSLMMMTKVCCFQRNFSSALPPLVPVKLPSKMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIAryqtncqvnprslkfkktIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFakryfspdEVKLltaisdpeiqRQELIKLWTLKEAYVKAVGrgfsaapfnTFTIRARVVKMGGFHHfdtqhsevklvfq
MFSFVSKRLSLMMMTKVCCFQRNFssalpplvpvklpskMETHFWYVLPDEVKsesllsqysellsPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQHSEVKLVFQ
*****SKRLSLMMMTKVCCFQRNFSSALPPLVPVKLPSKMETHFWYVLPDEVK*******************LYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQH********
**S*****L************************VKLPSKMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQHSEVKLVFQ
MFSFVSKRLSLMMMTKVCCFQRNFSSALPPLVPVKLPSKMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQHSEVKLVFQ
MFSFVSKRLSLMMMTKVCCFQRNFSSALPPLVPVKLPSKMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQHSEVKLVFQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MFSFVSKRLSLMMMTKVCCFQRNFSSALPPLVPVKLPSKMETHFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFHHFDTQHSEVKLVFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query253 2.2.26 [Sep-21-2011]
P39144224 4'-phosphopantetheinyl tr yes no 0.573 0.647 0.323 5e-16
P39135224 4'-phosphopantetheinyl tr yes no 0.584 0.660 0.342 7e-15
P37695237 4'-phosphopantetheinyl tr yes no 0.656 0.700 0.316 3e-14
P40683237 4'-phosphopantetheinyl tr N/A no 0.644 0.687 0.282 2e-13
Q9F4F7224 4'-phosphopantetheinyl tr no no 0.553 0.625 0.333 2e-13
Q55185246 Putative 4'-phosphopantet N/A no 0.604 0.621 0.337 3e-13
P55810233 4'-phosphopantetheinyl tr no no 0.505 0.549 0.348 7e-11
Q9CQF6309 L-aminoadipate-semialdehy yes no 0.652 0.533 0.25 5e-08
Q9NRN7309 L-aminoadipate-semialdehy yes no 0.632 0.517 0.252 6e-08
Q5NVE1309 L-aminoadipate-semialdehy yes no 0.632 0.517 0.252 6e-08
>sp|P39144|LP14_BACIU 4'-phosphopantetheinyl transferase OS=Bacillus subtilis GN=lpa-14 PE=3 SV=1 Back     alignment and function desciption
 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 53/164 (32%), Positives = 86/164 (52%), Gaps = 19/164 (11%)

Query: 68  REKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENG 127
           REK   ++ + D  +   L+  +L+RT  A+      ++P  + F    YGKP +     
Sbjct: 29  REKCRRFYHKEDAHR--TLIGDMLIRTAAAKAYG---LDPAGISFGVQEYGKPYIP---- 79

Query: 128 DKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLL 187
                P +HFNISH+   + C V  + PIGID+E    ++K   +  AKR+FSP E   L
Sbjct: 80  ---ALPDMHFNISHSGRWIVCAVD-SKPIGIDIE----KMKPGTIDIAKRFFSPTEYSDL 131

Query: 188 TAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRAR 231
            A   P+ Q      LW++KE+++K  G+G S  P ++F++R +
Sbjct: 132 QA-KHPDQQTDYFYHLWSMKESFIKQAGKGLS-LPLDSFSVRLK 173
May activate the peptidyl carrier protein (PCP) domains of surfactin synthetase SRF1/2/3 and iturin A synthetase, by transferring the 4'-phosphopantetheinyl moiety of coenzyme A (CoA) to a serine residue. Required for the coproduction of the lipopeptide antibiotics, iturin A and surfactin.
Bacillus subtilis (taxid: 1423)
EC: 2EC: .EC: 7EC: .EC: 8EC: .EC: -
>sp|P39135|SFP_BACSU 4'-phosphopantetheinyl transferase sfp OS=Bacillus subtilis (strain 168) GN=sfp PE=1 SV=2 Back     alignment and function description
>sp|P37695|HETI_NOSS1 4'-phosphopantetheinyl transferase HetI OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=hetI PE=3 SV=2 Back     alignment and function description
>sp|P40683|GSP_ANEMI 4'-phosphopantetheinyl transferase gsp OS=Aneurinibacillus migulanus GN=gsp PE=3 SV=2 Back     alignment and function description
>sp|Q9F4F7|FFP_BACIU 4'-phosphopantetheinyl transferase ffp OS=Bacillus subtilis GN=ffp PE=3 SV=1 Back     alignment and function description
>sp|Q55185|Y495_SYNY3 Putative 4'-phosphopantetheinyl transferase slr0495 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=slr0495 PE=3 SV=1 Back     alignment and function description
>sp|P55810|PSF1_BACPU 4'-phosphopantetheinyl transferase psf-1 OS=Bacillus pumilus GN=psf-1 PE=1 SV=1 Back     alignment and function description
>sp|Q9CQF6|ADPPT_MOUSE L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Mus musculus GN=Aasdhppt PE=2 SV=1 Back     alignment and function description
>sp|Q9NRN7|ADPPT_HUMAN L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Homo sapiens GN=AASDHPPT PE=1 SV=2 Back     alignment and function description
>sp|Q5NVE1|ADPPT_PONAB L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase OS=Pongo abelii GN=AASDHPPT PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
297743021323 unnamed protein product [Vitis vinifera] 0.932 0.730 0.690 4e-91
359482492317 PREDICTED: uncharacterized protein LOC10 0.885 0.706 0.714 2e-90
22330990300 4'-phosphopantetheinyl transferase [Arab 0.869 0.733 0.654 3e-84
356546091324 PREDICTED: 4'-phosphopantetheinyl transf 0.889 0.694 0.650 5e-83
12322905275 unknown protein; 54614-52946 [Arabidopsi 0.869 0.8 0.651 8e-83
79607890300 4'-phosphopantetheinyl transferase [Arab 0.869 0.733 0.645 2e-82
2947064 569 unknown protein [Arabidopsis thaliana] 0.869 0.386 0.636 6e-82
297833928300 4'-phosphopantetheinyl transferase famil 0.901 0.76 0.635 1e-81
255578955315 magnesium ion binding protein, putative 0.905 0.726 0.639 2e-81
449446241331 PREDICTED: 4'-phosphopantetheinyl transf 0.830 0.634 0.633 1e-77
>gi|297743021|emb|CBI35888.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  340 bits (871), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 165/239 (69%), Positives = 189/239 (79%), Gaps = 3/239 (1%)

Query: 1   MFSFVSKRLSLMMMTKVCCFQRNFSSALPPLVPVKLPSKMETHFWYVLPDEVKSESLLSQ 60
           MFSF+      M   K+ CFQRNFS +   LVPV+LPS+METHFWY+LPDEVKS +LL+Q
Sbjct: 1   MFSFLHMASFTM---KIHCFQRNFSFSSSALVPVQLPSRMETHFWYILPDEVKSATLLNQ 57

Query: 61  YSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKP 120
           Y ++LSP EK+N+  M GD  KKSALLAR LVRTTIARYQ N QV+P SLKF+K IYGKP
Sbjct: 58  YLDILSPCEKENVLRMHGDNLKKSALLARALVRTTIARYQINSQVSPTSLKFRKNIYGKP 117

Query: 121 EVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFS 180
           EVDW+N     PPPLHFNISHTSSL+ACGVT++ PIGIDVEEKQR  KN IL+FA+RYFS
Sbjct: 118 EVDWQNHYDRNPPPLHFNISHTSSLIACGVTLDSPIGIDVEEKQRTTKNNILSFARRYFS 177

Query: 181 PDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKMGGFH 239
           P EV+ L+ ISDPEIQR E +KLWTLKEAYVKA+GRGFSAAPF  FTIR R    G  H
Sbjct: 178 PHEVESLSIISDPEIQRLEFLKLWTLKEAYVKALGRGFSAAPFKNFTIRFRAATKGHLH 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359482492|ref|XP_002274180.2| PREDICTED: uncharacterized protein LOC100241207 [Vitis vinifera] Back     alignment and taxonomy information
>gi|22330990|ref|NP_187754.2| 4'-phosphopantetheinyl transferase [Arabidopsis thaliana] gi|17979266|gb|AAL49949.1| AT3g11470/F24K9_14 [Arabidopsis thaliana] gi|20147157|gb|AAM10295.1| AT3g11470/F24K9_14 [Arabidopsis thaliana] gi|332641530|gb|AEE75051.1| 4'-phosphopantetheinyl transferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356546091|ref|XP_003541465.1| PREDICTED: 4'-phosphopantetheinyl transferase-like [Glycine max] Back     alignment and taxonomy information
>gi|12322905|gb|AAG51443.1|AC008153_16 unknown protein; 54614-52946 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|79607890|ref|NP_974284.2| 4'-phosphopantetheinyl transferase [Arabidopsis thaliana] gi|332641529|gb|AEE75050.1| 4'-phosphopantetheinyl transferase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|2947064|gb|AAC05345.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297833928|ref|XP_002884846.1| 4'-phosphopantetheinyl transferase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330686|gb|EFH61105.1| 4'-phosphopantetheinyl transferase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|255578955|ref|XP_002530330.1| magnesium ion binding protein, putative [Ricinus communis] gi|223530134|gb|EEF32046.1| magnesium ion binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449446241|ref|XP_004140880.1| PREDICTED: 4'-phosphopantetheinyl transferase sfp-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
TAIR|locus:2080737300 AT3G11470 [Arabidopsis thalian 0.790 0.666 0.61 1.2e-65
TAIR|locus:2058877 661 AT2G02770 [Arabidopsis thalian 0.679 0.260 0.538 9.8e-48
TIGR_CMR|CPS_3106282 CPS_3106 "4-phosphopantetheiny 0.687 0.617 0.354 7e-22
TIGR_CMR|CBU_0221243 CBU_0221 "phosphopantethiene-- 0.450 0.469 0.344 7.1e-13
FB|FBgn0052099290 eap "ebony activating protein" 0.573 0.5 0.319 7.3e-09
UNIPROTKB|G3MZI2308 G3MZI2 "Uncharacterized protei 0.577 0.474 0.266 8.8e-09
UNIPROTKB|F1MS62309 AASDHPPT "Uncharacterized prot 0.577 0.472 0.259 5.5e-08
UNIPROTKB|F1SV35306 AASDHPPT "Uncharacterized prot 0.577 0.477 0.259 7.2e-08
UNIPROTKB|Q9NRN7309 AASDHPPT "L-aminoadipate-semia 0.577 0.472 0.253 7.4e-08
UNIPROTKB|Q5NVE1309 AASDHPPT "L-aminoadipate-semia 0.577 0.472 0.253 9.8e-08
TAIR|locus:2080737 AT3G11470 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 668 (240.2 bits), Expect = 1.2e-65, P = 1.2e-65
 Identities = 122/200 (61%), Positives = 157/200 (78%)

Query:    40 METHFWYVLPDEVKXXXXXXXXXXXXXPREKKNLYHMQGDQFKKSALLARVLVRTTIARY 99
             METH W++ PDEVK             P EK+ +  M+GD+ KK+ALLAR LVRTTIAR 
Sbjct:    29 METHLWFIRPDEVKSTSLLKHYSQLLSPTEKEKVLQMRGDELKKNALLARTLVRTTIARC 88

Query:   100 QTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGID 159
              TN +V+P++L FKK +YGKPEVDW+N      PPLHFNISHT SL+ACGVTV+VP+GID
Sbjct:    89 MTNNEVDPKALMFKKNMYGKPEVDWQNYTNCNNPPLHFNISHTDSLIACGVTVHVPVGID 148

Query:   160 VEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFS 219
             VE+K+R++K+ ILAFA+R++S DEVK L+ + DPE+QR+E IKLWTLKEAYVKA+G+GFS
Sbjct:   149 VEDKERKIKHDILAFAERFYSADEVKFLSTLPDPEVQRKEFIKLWTLKEAYVKALGKGFS 208

Query:   220 AAPFNTFTIRARVVKMGGFH 239
             AAPFNTFTI+++V   G ++
Sbjct:   209 AAPFNTFTIQSKVGTKGEYN 228
GO:0000287 "magnesium ion binding" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0008152 "metabolic process" evidence=ISS
GO:0008897 "holo-[acyl-carrier-protein
GO:0009059 "macromolecule biosynthetic process" evidence=IEA
GO:0016740 "transferase activity" evidence=ISS
TAIR|locus:2058877 AT2G02770 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3106 CPS_3106 "4-phosphopantetheinyl transferase" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CBU_0221 CBU_0221 "phosphopantethiene--protein transferase domain protein" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
FB|FBgn0052099 eap "ebony activating protein" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|G3MZI2 G3MZI2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MS62 AASDHPPT "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SV35 AASDHPPT "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9NRN7 AASDHPPT "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5NVE1 AASDHPPT "L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.7.8LOW CONFIDENCE prediction!
4th Layer2.7.8.70.737

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
COG2091223 COG2091, Sfp, Phosphopantetheinyl transferase [Coe 2e-26
pfam01648108 pfam01648, ACPS, 4'-phosphopantetheinyl transferas 1e-14
TIGR00556128 TIGR00556, pantethn_trn, phosphopantetheine--prote 2e-07
COG0736127 COG0736, AcpS, Phosphopantetheinyl transferase (ho 2e-05
PRK10351187 PRK10351, PRK10351, holo-(acyl carrier protein) sy 6e-05
PRK14659122 PRK14659, acpS, 4'-phosphopantetheinyl transferase 2e-04
PRK00070126 PRK00070, acpS, 4'-phosphopantetheinyl transferase 0.002
>gnl|CDD|225002 COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme metabolism] Back     alignment and domain information 
 Score =  102 bits (255), Expect = 2e-26
 Identities = 50/193 (25%), Positives = 85/193 (44%), Gaps = 19/193 (9%)

Query: 39  KMETHFWYVLPDEVKSESLLSQYS-ELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIA 97
            M T F   +     S+  L +     L   E +     +  + ++  L +R+L+R  ++
Sbjct: 1   MMATVFVVGIQ----SDRPLIERRLPSLLSEEARRGPRYRNKRDRERFLASRLLLRALLS 56

Query: 98  RYQTNCQVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIG 157
                  ++P  L+      GKP +  EN        L FNISH+   VA  ++    IG
Sbjct: 57  IAL---GLDPELLQISYGERGKPYLPDEN-------LLDFNISHSGDYVAVALSKEGEIG 106

Query: 158 IDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRG 217
           +D+E  + R +    + A R+F P E   L  + D +   +   +LWTLKEA +KA G+G
Sbjct: 107 VDIE--KIRPRAGWRSLAARFFHPFEPNELAWL-DKDQDNEAFYRLWTLKEAVLKATGKG 163

Query: 218 FSAAPFNTFTIRA 230
             A   ++  +  
Sbjct: 164 -LADGLSSVDLTP 175

Length = 223
>gnl|CDD|216625 pfam01648, ACPS, 4'-phosphopantetheinyl transferase superfamily Back     alignment and domain information
>gnl|CDD|233022 TIGR00556, pantethn_trn, phosphopantetheine--protein transferase domain Back     alignment and domain information
>gnl|CDD|223807 COG0736, AcpS, Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|182399 PRK10351, PRK10351, holo-(acyl carrier protein) synthase 2; Provisional Back     alignment and domain information
>gnl|CDD|237780 PRK14659, acpS, 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>gnl|CDD|234610 PRK00070, acpS, 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 253
KOG0945289 consensus Alpha-aminoadipic semialdehyde dehydroge 100.0
COG2091223 Sfp Phosphopantetheinyl transferase [Coenzyme meta 100.0
PRK10351187 holo-(acyl carrier protein) synthase 2; Provisiona 99.97
PRK10251207 phosphopantetheinyltransferase component of entero 99.94
COG2977228 EntD Phosphopantetheinyl transferase component of 99.84
PF01648115 ACPS: 4'-phosphopantetheinyl transferase superfami 99.59
PRK14659122 acpS 4'-phosphopantetheinyl transferase; Provision 99.57
TIGR00556128 pantethn_trn phosphopantethiene--protein transfera 99.5
PRK14656126 acpS 4'-phosphopantetheinyl transferase; Provision 99.48
PRK14660125 acpS 4'-phosphopantetheinyl transferase; Provision 99.44
TIGR00516121 acpS holo-[acyl-carrier-protein] synthase. Formerl 99.43
PRK14658115 acpS 4'-phosphopantetheinyl transferase; Provision 99.43
PRK14661169 acpS 4'-phosphopantetheinyl transferase; Provision 99.42
PRK14657123 acpS 4'-phosphopantetheinyl transferase; Provision 99.4
COG0736127 AcpS Phosphopantetheinyl transferase (holo-ACP syn 99.39
PRK00070126 acpS 4'-phosphopantetheinyl transferase; Provision 99.3
PRK14663116 acpS 4'-phosphopantetheinyl transferase; Provision 99.29
PRK14662120 acpS 4'-phosphopantetheinyl transferase; Provision 99.28
PRK14658115 acpS 4'-phosphopantetheinyl transferase; Provision 99.21
PRK00070126 acpS 4'-phosphopantetheinyl transferase; Provision 99.12
PRK14659122 acpS 4'-phosphopantetheinyl transferase; Provision 98.83
PRK14660125 acpS 4'-phosphopantetheinyl transferase; Provision 98.83
COG0736127 AcpS Phosphopantetheinyl transferase (holo-ACP syn 98.79
PRK14662120 acpS 4'-phosphopantetheinyl transferase; Provision 98.79
PRK14663116 acpS 4'-phosphopantetheinyl transferase; Provision 98.78
TIGR00516121 acpS holo-[acyl-carrier-protein] synthase. Formerl 98.77
PRK14657123 acpS 4'-phosphopantetheinyl transferase; Provision 98.6
PRK14656126 acpS 4'-phosphopantetheinyl transferase; Provision 98.53
PRK14661169 acpS 4'-phosphopantetheinyl transferase; Provision 98.18
TIGR00556128 pantethn_trn phosphopantethiene--protein transfera 97.65
PF01648115 ACPS: 4'-phosphopantetheinyl transferase superfami 97.11
PF1398647 DUF4224: Domain of unknown function (DUF4224) 85.02
>KOG0945 consensus Alpha-aminoadipic semialdehyde dehydrogenase-phosphopantetheinyl transferase [Amino acid transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=6e-36  Score=257.50  Aligned_cols=201  Identities=36%  Similarity=0.564  Sum_probs=169.2

Q ss_pred             CCCCCCCCCCCCeEEEEEEeCCCC-CChhhHHHHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCC
Q 025417           29 PPLVPVKLPSKMETHFWYVLPDEV-KSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNP  107 (253)
Q Consensus        29 ~~~~~~~~~~~~~v~lw~~~~~~~-~~~~~~~~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p  107 (253)
                      |..++...|.-...+.|.+....+ ..-+++..+.+.|+++|++|+.+|+..+|+...|+||++.|++++.+   .|++|
T Consensus         4 ~~~~~~~v~r~~~~~~wAf~~~~~e~s~a~f~~a~~~ls~se~erI~qfr~~~DakaaL~grLl~R~~~a~~---~~~~~   80 (289)
T KOG0945|consen    4 PSLVPCKVPRWMISLQWAFVVPDFEKSLALFRHAVQSLSPSEKERILQFRFDEDAKAALAGRLLVRHLVAIY---LGVPW   80 (289)
T ss_pred             chhhhhhhhHHHhhhhhheecchhhhhHHHHHHHHHhCCHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH---hCCCh
Confidence            445555555545567786554433 33457888889999999999999999999999999999999999999   79999


Q ss_pred             CceeEeeCCCCCceeecCCCCCCCCCCeEEEEcccccceeEEEccccccccchhHH-HHhhhhhHHHHHHhcCCHHHHHH
Q 025417          108 RSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEK-QRRLKNKILAFAKRYFSPDEVKL  186 (253)
Q Consensus       108 ~~i~i~~~~~GkP~l~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~~~VGVDIE~~-~~~~~~~~~~l~~~~fs~~E~~~  186 (253)
                      ++++|.++.+|||.+.+.. -....+.++|||||.|++++||.....+|||||+.. .+....++.++++++||++|++.
T Consensus        81 n~l~f~rt~~GKP~l~qn~-~~p~~~~f~fNvSH~gd~iv~at~~~~~VGIDIm~~~~r~~~~e~l~~~kr~fS~~E~k~  159 (289)
T KOG0945|consen   81 NELRFSRTEYGKPVLWQNY-SNPFSPTFGFNVSHQGDLIVVATTVHVPVGIDIMRPKERKTAHEELELFKRVFSEDEWKM  159 (289)
T ss_pred             hHeEeecccCCCcchhhcc-cCCCCCCccceeeeeceEEEEeccCCcccceeeeecccccchHHHHHHHHHhcCHHHHHH
Confidence            9999999999999543221 112357899999999999999998789999999998 44456788999999999999999


Q ss_pred             HhcCCCchHHHHHHHHHHHHHHHHHhccCCCCCCCCCceEEEEecCCC
Q 025417          187 LTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVK  234 (253)
Q Consensus       187 l~~~~~~~~~~~~f~~~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~~~~~  234 (253)
                      +.+.+++..+...||++||+||||+||+|.||. .+|+.+.|...+-+
T Consensus       160 l~s~~~e~~~~~~FyrlWtLKEa~lKAtGvGl~-~~L~~~~F~~~p~~  206 (289)
T KOG0945|consen  160 LKSAPDEEVQRTMFYRLWTLKEAILKATGVGLN-TDLSLLDFSANPFN  206 (289)
T ss_pred             HHcCCChhhHHHHHHHHHHHHHHHHHHhcCCcc-cccccccccccccc
Confidence            999998888999999999999999999999998 78888888877665

>COG2091 Sfp Phosphopantetheinyl transferase [Coenzyme metabolism] Back     alignment and domain information
>PRK10351 holo-(acyl carrier protein) synthase 2; Provisional Back     alignment and domain information
>PRK10251 phosphopantetheinyltransferase component of enterobactin synthase multienzyme complex; Provisional Back     alignment and domain information
>COG2977 EntD Phosphopantetheinyl transferase component of siderophore synthetase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding Back     alignment and domain information
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain Back     alignment and domain information
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase Back     alignment and domain information
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism] Back     alignment and domain information
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14658 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK00070 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14659 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14660 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>COG0736 AcpS Phosphopantetheinyl transferase (holo-ACP synthase) [Lipid metabolism] Back     alignment and domain information
>PRK14662 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14663 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>TIGR00516 acpS holo-[acyl-carrier-protein] synthase Back     alignment and domain information
>PRK14657 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14656 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>PRK14661 acpS 4'-phosphopantetheinyl transferase; Provisional Back     alignment and domain information
>TIGR00556 pantethn_trn phosphopantethiene--protein transferase domain Back     alignment and domain information
>PF01648 ACPS: 4'-phosphopantetheinyl transferase superfamily; InterPro: IPR008278 These proteins transfer the 4'-phosphopantetheine (4'-PP) moiety from coenzyme A (CoA) to the invariant serine of pp-binding Back     alignment and domain information
>PF13986 DUF4224: Domain of unknown function (DUF4224) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
1qr0_A228 Crystal Structure Of The 4'-Phosphopantetheinyl Tra 7e-15
2cg5_A319 Structure Of Aminoadipate-Semialdehyde Dehydrogenas 2e-08
2byd_A323 Structure Of Aminoadipate-semialdehyde Dehydrogenas 2e-08
>pdb|1QR0|A Chain A, Crystal Structure Of The 4'-Phosphopantetheinyl Transferase Sfp- Coenzyme A Complex Length = 228 Back     alignment and structure 
Iteration: 1

 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 58/165 (35%), Positives = 84/165 (50%), Gaps = 25/165 (15%)
Query: 68  REKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPEVDWENG 127
           REK   ++ + D  +   LL  VLVR+ I+R     Q++   ++F    YGKP       
Sbjct: 29  REKCRRFYHKEDAHR--TLLGDVLVRSVISR---QYQLDKSDIRFSTQEYGKP------- 76
Query: 128 DKWCPPPL---HFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEV 184
              C P L   HFNISH+   V  G   + PIGID+E    + K   L  AKR+FS  E 
Sbjct: 77  ---CIPDLPDAHFNISHSGRWV-IGAFDSQPIGIDIE----KTKPISLEIAKRFFSKTEY 128
Query: 185 KLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSAAPFNTFTIR 229
             L A  D + Q      LW++KE+++K  G+G S  P ++F++R
Sbjct: 129 SDLLA-KDKDEQTDYFYHLWSMKESFIKQEGKGLS-LPLDSFSVR 171
>pdb|2CG5|A Chain A, Structure Of Aminoadipate-Semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase In Complex With Cytosolic Acyl Carrier Protein And Coenzyme A Length = 319 Back     alignment and structure
>pdb|2BYD|A Chain A, Structure Of Aminoadipate-semialdehyde Dehydrogenase- Phosphopantetheinyl Transferase Length = 323 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
2c43_A323 Aminoadipate-semialdehyde dehydrogenase- phosphopa 3e-42
1qr0_A228 4'-phosphopantetheinyl transferase SFP; protein-co 2e-39
3f09_A143 Holo-[acyl-carrier-protein] synthase; structural g 5e-08
1f7l_A121 Holo-(acyl carrier protein) synthase; 9-strand pse 6e-07
1fth_A122 ACPS, acyl carrier protein synthase; bacterial fat 2e-06
2qg8_A163 Acyl carrier protein synthase PY06285; malaria, 3' 5e-06
2bdd_A182 ACP-synthase; structural genomics, structural geno 5e-06
3hyk_A122 Holo-[acyl-carrier-protein] synthase; structural g 6e-06
2was_A122 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FA 7e-06
3h88_A129 Holo-[acyl-carrier-protein] synthase; alpha-beta s 1e-05
2wds_A143 Holo-[acyl-carrier-protein] synthase; phosphopante 2e-05
3nfd_A153 Phosphopantethiene protein transferase, PPT1P; acy 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-05
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A* Length = 323 Back     alignment and structure
 Score =  145 bits (367), Expect = 3e-42
 Identities = 39/189 (20%), Positives = 76/189 (40%), Gaps = 10/189 (5%)

Query: 45  WYV-LPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNC 103
           W       + S +        + P EK+ +      +  K+A+  R+++R  +A      
Sbjct: 29  WAFSCGTWLPSRAEWLLAVRSIQPEEKERIGQFVFARDAKAAMAGRLMIRKLVAEK---L 85

Query: 104 QVNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEK 163
            +    ++ ++T  GKP +  ++ + +  P  +FNISH            + +GID+ + 
Sbjct: 86  NIPWNHIRLQRTAKGKPVLAKDSSNPY--PNFNFNISHQGDYAVLAAEPELQVGIDIMKT 143

Query: 164 QRRLKNKILAF---AKRYFSPDEVKLLTAISDPEIQRQELIKLWTLKEAYVKAVGRGFSA 220
               +  I  F    KR F+  E + + +  D   Q     + W LKE+++KA+G G   
Sbjct: 144 SFPGRGSIPEFFHIMKRKFTNKEWETIRSFKDEWTQLDMFYRNWALKESFIKAIGVGL-G 202

Query: 221 APFNTFTIR 229
                    
Sbjct: 203 FELQRLEFD 211
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1 d.150.1.1 Length = 228 Back     alignment and structure
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, CO complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A* Length = 121 Back     alignment and structure
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A* Length = 122 Back     alignment and structure
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SG structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii} Length = 163 Back     alignment and structure
>2bdd_A ACP-synthase; structural genomics, structural genomics conso SGC, transferase; 2.28A {Plasmodium yoelii yoelii} Length = 182 Back     alignment and structure
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, I diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} Length = 122 Back     alignment and structure
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD, NADP, transferase, phosphoprotein, oxidoreductase, lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A* 2was_B Length = 122 Back     alignment and structure
>2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM, fatty acid biosynthesis, lipid synthesis, transferase, polyketides; HET: COA; 1.35A {Streptomyces coelicolor} PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A* Length = 143 Back     alignment and structure
>3nfd_A Phosphopantethiene protein transferase, PPT1P; acyl carrier protein synthase, mycobacterium tuberculosis, A carrier protein; HET: COA; 1.89A {Corynebacterium ammoniagenes} PDB: 3ne9_A* Length = 153 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
1qr0_A228 4'-phosphopantetheinyl transferase SFP; protein-co 100.0
2c43_A323 Aminoadipate-semialdehyde dehydrogenase- phosphopa 100.0
3f09_A143 Holo-[acyl-carrier-protein] synthase; structural g 99.74
1fth_A122 ACPS, acyl carrier protein synthase; bacterial fat 99.68
3hyk_A122 Holo-[acyl-carrier-protein] synthase; structural g 99.63
3h88_A129 Holo-[acyl-carrier-protein] synthase; alpha-beta s 99.63
2was_A122 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FA 99.63
1f7l_A121 Holo-(acyl carrier protein) synthase; 9-strand pse 99.61
3gwm_A129 Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 99.52
2bdd_A182 ACP-synthase; structural genomics, structural geno 99.5
2qg8_A163 Acyl carrier protein synthase PY06285; malaria, 3' 99.49
2wds_A143 Holo-[acyl-carrier-protein] synthase; phosphopante 99.46
3ota_A129 Holo-[acyl-carrier-protein] synthase; structural g 99.46
3nfd_A153 Phosphopantetheine protein transferase, PPT1P; acy 99.42
1f7l_A121 Holo-(acyl carrier protein) synthase; 9-strand pse 99.26
3f09_A143 Holo-[acyl-carrier-protein] synthase; structural g 99.22
3hyk_A122 Holo-[acyl-carrier-protein] synthase; structural g 99.07
1fth_A122 ACPS, acyl carrier protein synthase; bacterial fat 98.98
3ota_A129 Holo-[acyl-carrier-protein] synthase; structural g 98.96
3gwm_A129 Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 98.95
3h88_A129 Holo-[acyl-carrier-protein] synthase; alpha-beta s 98.89
2was_A122 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FA 98.8
2qg8_A163 Acyl carrier protein synthase PY06285; malaria, 3' 98.78
2bdd_A182 ACP-synthase; structural genomics, structural geno 98.74
3nfd_A153 Phosphopantetheine protein transferase, PPT1P; acy 98.72
2wds_A143 Holo-[acyl-carrier-protein] synthase; phosphopante 98.72
2uv9_A1878 Fatty acid synthase alpha subunits; fungal, dehydr 98.7
2uv8_A1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 98.47
1qr0_A228 4'-phosphopantetheinyl transferase SFP; protein-co 97.84
2uv8_A1887 Fatty acid synthase subunit alpha (FAS2); fatty ac 97.56
2uv9_A1878 Fatty acid synthase alpha subunits; fungal, dehydr 97.49
2c43_A323 Aminoadipate-semialdehyde dehydrogenase- phosphopa 96.87
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1 d.150.1.1 Back     alignment and structure
Probab=100.00  E-value=3.3e-38  Score=272.54  Aligned_cols=194  Identities=27%  Similarity=0.435  Sum_probs=168.9

Q ss_pred             EEEEEEeCCCCCChhhHHHHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCCCce
Q 025417           42 THFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPE  121 (253)
Q Consensus        42 v~lw~~~~~~~~~~~~~~~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~GkP~  121 (253)
                      +++|.++.+...++..++.+.++|+++|++++.+|+++++|.+|++||.++|++++++   +|++|.+++|.++++|||+
T Consensus         1 ~~v~~~~~~~~~~~~~~~~~~~~Ls~~E~~~~~~~~~~~~r~~~la~R~~~r~al~~~---lg~~~~~i~i~~~~~GkP~   77 (228)
T 1qr0_A            1 MKIYGIYMDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQ---YQLDKSDIRFSTQEYGKPC   77 (228)
T ss_dssp             CEEEEEECSSCCCHHHHHHHHTTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH---TTCCGGGCCCEECTTSCEE
T ss_pred             CEEEEEECCCcCCHHHHHHHHhhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH---hCcCHHHcEEeeCcCCCce
Confidence            4699999876445556778889999999999999999999999999999999999998   7999999999999999999


Q ss_pred             eecCCCCCCCCCCeEEEEcccccceeEEEccccccccchhHHHHhhhhhHHHHHHhcCCHHHHHHHhcCCCchHHHHHHH
Q 025417          122 VDWENGDKWCPPPLHFNISHTSSLVACGVTVNVPIGIDVEEKQRRLKNKILAFAKRYFSPDEVKLLTAISDPEIQRQELI  201 (253)
Q Consensus       122 l~~~~~~~~~~~~~~fSISHs~~~v~~a~s~~~~VGVDIE~~~~~~~~~~~~l~~~~fs~~E~~~l~~~~~~~~~~~~f~  201 (253)
                      +..       .++++||||||+++++|+++ ..+||||||.+.+.   + ..+++++||++|++++...+. +.+...|+
T Consensus        78 l~~-------~~~~~~SiSHs~~~a~~a~~-~~~vGiDie~i~~~---~-~~~~~~~~t~~E~~~l~~~~~-~~~~~~~~  144 (228)
T 1qr0_A           78 IPD-------LPDAHFNISHSGRWVIGAFD-SQPIGIDIEKTKPI---S-LEIAKRFFSKTEYSDLLAKDK-DEQTDYFY  144 (228)
T ss_dssp             CTT-------CTTCEEEEEEETTEEEEEEE-SSCCEEEEEECCCC---C-HHHHSSSSCHHHHHHHHHSCH-HHHHHHHH
T ss_pred             EeC-------CCCceEEecccCCeEEEEEC-CCCEEEEeEECCCC---c-HHHHHHhCCHHHHHHHHhCCh-hhHHHHHH
Confidence            984       35799999999999999998 69999999998763   2 388999999999999998763 45678999


Q ss_pred             HHHHHHHHHHhccCCCCCCCCCceEEEEecCCCc-----------cc-EEeecCCCeEEEEee
Q 025417          202 KLWTLKEAYVKAVGRGFSAAPFNTFTIRARVVKM-----------GG-FHHFDTQHSEVKLVF  252 (253)
Q Consensus       202 ~~Wt~KEA~~Ka~G~GL~~~~l~~~~i~~~~~~~-----------~~-~~~~~~~~~~~~~~~  252 (253)
                      .+||+|||++|++|+||. .++++++|..++.+.           .. .+.+++++|.++++.
T Consensus       145 ~~wt~KEA~~Ka~G~gl~-~~~~~~~i~~~~~g~~~~~~~~~~~~~~~~s~~~~~~y~~Av~~  206 (228)
T 1qr0_A          145 HLWSMKESFIKQEGKGLS-LPLDSFSVRLHQDGQVSIELPDSHSPCYIKTYEVDPGYKMAVCA  206 (228)
T ss_dssp             HHHHHHHHHHHHHCSTTS-CCSSCCEEEECGGGCEEEECSCTTSCCEEEEECSCTTEEEEEEE
T ss_pred             HHHHHHHHHHHHhCCCCC-CCCceEEEeeCCCCCeEEecCCCCCCeEEEEEecCCCEEEEEEE
Confidence            999999999999999998 799999998775432           11 378889999988864
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A* Back     alignment and structure
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A* Back     alignment and structure
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, I diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} SCOP: d.150.1.0 Back     alignment and structure
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD, NADP, transferase, phosphoprotein, oxidoreductase, lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A* 2was_B Back     alignment and structure
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, CO complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A* Back     alignment and structure
>3gwm_A Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 9-stand pseudo beta barrel protein, cytoplasm, fatty acid biosynthesis; 1.70A {Mycobacterium smegmatis} PDB: 3h7q_A* 3ne3_B 3ne1_A 3hqj_A* 4hc6_A Back     alignment and structure
>2bdd_A ACP-synthase; structural genomics, structural genomics conso SGC, transferase; 2.28A {Plasmodium yoelii yoelii} Back     alignment and structure
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SG structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii} Back     alignment and structure
>2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM, fatty acid biosynthesis, lipid synthesis, transferase, polyketides; HET: COA; 1.35A {Streptomyces coelicolor} PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A* Back     alignment and structure
>3nfd_A Phosphopantetheine protein transferase, PPT1P; acyl carrier protein synthase, mycobacterium tuberculosis, A carrier protein; HET: COA; 1.89A {Corynebacterium ammoniagenes} PDB: 3ne9_A* Back     alignment and structure
>1f7l_A Holo-(acyl carrier protein) synthase; 9-strand pseudo beta barrel protein, COA complex protein, CO complex, transferase; HET: COA; 1.50A {Bacillus subtilis} SCOP: d.150.1.2 PDB: 1f7t_A 1f80_A* Back     alignment and structure
>3hyk_A Holo-[acyl-carrier-protein] synthase; structural genomics, I diseases; HET: MSE A3P; 2.31A {Bacillus anthracis} SCOP: d.150.1.0 Back     alignment and structure
>1fth_A ACPS, acyl carrier protein synthase; bacterial fatty acid biosynthesis, acyl carrier synthase, coenzyme A, X-RAY crystallography; HET: A3P; 1.90A {Streptococcus pneumoniae} SCOP: d.150.1.2 PDB: 1fte_A 1ftf_A* Back     alignment and structure
>3gwm_A Holo-[acyl-carrier-protein] synthase; HOMO-trimer, 9-stand pseudo beta barrel protein, cytoplasm, fatty acid biosynthesis; 1.70A {Mycobacterium smegmatis} PDB: 3h7q_A* 3ne3_B 3ne1_A 3hqj_A* 4hc6_A Back     alignment and structure
>2was_A 3-oxoacyl-[acyl-carrier-protein] synthase; COA, FAS, PPT, NAD, NADP, transferase, phosphoprotein, oxidoreductase, lipid synthesis; 1.90A {Saccharomyces cerevisiae} PDB: 2wat_A* 2was_B Back     alignment and structure
>2qg8_A Acyl carrier protein synthase PY06285; malaria, 3'5'ADP, SG structural genomics consortium, transferase; HET: A3P; 2.00A {Plasmodium yoelii yoelii} Back     alignment and structure
>2bdd_A ACP-synthase; structural genomics, structural genomics conso SGC, transferase; 2.28A {Plasmodium yoelii yoelii} Back     alignment and structure
>3nfd_A Phosphopantetheine protein transferase, PPT1P; acyl carrier protein synthase, mycobacterium tuberculosis, A carrier protein; HET: COA; 1.89A {Corynebacterium ammoniagenes} PDB: 3ne9_A* Back     alignment and structure
>2wds_A Holo-[acyl-carrier-protein] synthase; phosphopantetheine ARM, fatty acid biosynthesis, lipid synthesis, transferase, polyketides; HET: COA; 1.35A {Streptomyces coelicolor} PDB: 2wdo_A* 2jca_A 2jbz_A* 2wdy_A* Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>1qr0_A 4'-phosphopantetheinyl transferase SFP; protein-coenzyme A complex; HET: COA; 1.90A {Bacillus subtilis} SCOP: d.150.1.1 d.150.1.1 Back     alignment and structure
>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Back     alignment and structure
>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Back     alignment and structure
>2c43_A Aminoadipate-semialdehyde dehydrogenase- phosphopantetheinyl transferase; fatty acid biosynthesis, coenzyme A; HET: COA; 1.93A {Homo sapiens} PDB: 2byd_A* 2cg5_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 253
d1qr0a1101 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transfe 3e-18
d1qr0a2127 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl trans 7e-14
d1ftha_117 d.150.1.2 (A:) Holo-(acyl carrier protein) synthas 2e-05
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]} Length = 101 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: 4'-phosphopantetheinyl transferase
superfamily: 4'-phosphopantetheinyl transferase
family: 4'-Phosphopantetheinyl transferase SFP
domain: 4'-Phosphopantetheinyl transferase SFP
species: Bacillus subtilis [TaxId: 1423]

 Score = 75.3 bits (185), Expect = 3e-18
 Identities = 26/107 (24%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 45  WYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQ 104
           + +  D   S+    ++   +SP +++        +     LL  VLVR+ I+R     Q
Sbjct: 4   YGIYMDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQ---YQ 60

Query: 105 VNPRSLKFKKTIYGKPEVDWENGDKWCPPPLHFNISHTSSLVACGVT 151
           ++   ++F    YGKP +          P  HFNISH+   V     
Sbjct: 61  LDKSDIRFSTQEYGKPCIPD-------LPDAHFNISHSGRWVIGAFD 100
>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]} Length = 127 Back     information, alignment and structure
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]} Length = 117 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
d1qr0a1101 4'-Phosphopantetheinyl transferase SFP {Bacillus s 99.9
d1qr0a2127 4'-Phosphopantetheinyl transferase SFP {Bacillus s 99.77
d1ftha_117 Holo-(acyl carrier protein) synthase ACPS {Strepto 99.58
d1f7la_118 Holo-(acyl carrier protein) synthase ACPS {Bacillu 99.43
d1ftha_117 Holo-(acyl carrier protein) synthase ACPS {Strepto 99.18
d1f7la_118 Holo-(acyl carrier protein) synthase ACPS {Bacillu 99.11
d1qr0a2127 4'-Phosphopantetheinyl transferase SFP {Bacillus s 96.92
d1qr0a1101 4'-Phosphopantetheinyl transferase SFP {Bacillus s 81.37
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: 4'-phosphopantetheinyl transferase
superfamily: 4'-phosphopantetheinyl transferase
family: 4'-Phosphopantetheinyl transferase SFP
domain: 4'-Phosphopantetheinyl transferase SFP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=9.9e-24  Score=158.14  Aligned_cols=100  Identities=26%  Similarity=0.417  Sum_probs=92.5

Q ss_pred             EEEEEEeCCCCCChhhHHHHhccCCHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhhhhcCCCCCCceeEeeCCCCCce
Q 025417           42 THFWYVLPDEVKSESLLSQYSELLSPREKKNLYHMQGDQFKKSALLARVLVRTTIARYQTNCQVNPRSLKFKKTIYGKPE  121 (253)
Q Consensus        42 v~lw~~~~~~~~~~~~~~~~~~~L~~~E~~r~~~~~~~~~r~~~l~~R~llr~~L~~~~~~~g~~p~~i~i~~~~~GkP~  121 (253)
                      +.+|.+..+...+....+.++.+|+++|++|+.+|+.+++|.++++||.++|.+|+++   +|++|.++.|.++++|||+
T Consensus         1 ~~i~~i~~~~~~~~~~~~~~~~~Ls~~e~~r~~r~~~~~dr~~~l~~r~llr~~l~~~---~~~~p~~i~~~~~~~GKP~   77 (101)
T d1qr0a1           1 MKIYGIYMDRPLSQEENERFMTFISPEKREKCRRFYHKEDAHRTLLGDVLVRSVISRQ---YQLDKSDIRFSTQEYGKPC   77 (101)
T ss_dssp             CEEEEEECSSCCCHHHHHHHHTTSCHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHH---TTCCGGGCCCEECTTSCEE
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHCCHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHH---hCCCccceeEEeCCCCCcc
Confidence            3689999887766777888999999999999999999999999999999999999998   8999999999999999999


Q ss_pred             eecCCCCCCCCCCeEEEEcccccceeEEEc
Q 025417          122 VDWENGDKWCPPPLHFNISHTSSLVACGVT  151 (253)
Q Consensus       122 l~~~~~~~~~~~~~~fSISHs~~~v~~a~s  151 (253)
                      +.+       .++++||||||++||+||++
T Consensus        78 l~~-------~~~i~FNiSHsg~~vv~avs  100 (101)
T d1qr0a1          78 IPD-------LPDAHFNISHSGRWVIGAFD  100 (101)
T ss_dssp             CTT-------CTTCEEEEEEETTEEEEEEE
T ss_pred             ccC-------CCCcEEEecccCCeEEEEEe
Confidence            974       36799999999999999997
>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1f7la_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qr0a2 d.150.1.1 (A:102-228) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1qr0a1 d.150.1.1 (A:1-101) 4'-Phosphopantetheinyl transferase SFP {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure