Citrus Sinensis ID: 025430

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVSTENDNLSSDGEADDDGDDDEIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASSGKKSQS
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
melrgshnvrgthaattgggredcwsegatgtlIEAWGDRYVRlnrghlrqkDWKEVAESVNsrengvkpkktdiqcKNRIDTLKKKYKiekakpppskwpfyyrldsligndavsskkpanitlrvkskprtsfvgrsvstendnlssdgeadddgdddeIVVKKVHrmedvdlsdgAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKskrkqrpassgkksqs
melrgshnvrgthaattgggredcwsEGATGTLIEAWGDRYVRLNRghlrqkdwKEVAesvnsrengvkpkktdiqcknridtlkkkykiekakpppskwpfYYRLDSLIGndavsskkpanitlrvkskprtsfvgrsvstendnlssdgeadddgddDEIVVKKVHrmedvdlsdgaaCRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLeiqkskrkqrpassgkksqs
MELRGSHNVRgthaattgggREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLkkkykiekakpppSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVSTENDNLSSdgeadddgdddeIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASSGKKSQS
*********************EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDW********************************************KWPFYYRLDSLIGND*************************************************VVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE*************RLEFIKDVECERMNMFMG***********************
****************************ATGTLIEAWGDRYVR****HLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLK***************PFYYRLDSL**********************************************************************ACRELA**********************************VECERMNMF*************************
******************GGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVS****************DDDEIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLE*******************
**********************DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGND*****************************************************************AACRELARAILKFGEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSK**************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MELRGSHNVRGTHAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSVSTENDNLSSDGEADDDGDDDEIVVKKVHRMEDVDLSDGAACRELARAILKFGEIxxxxxxxxxxxxxxxxxxxxxFIKDVECERMNMFMGAQLEIQKSKRKQRPASSGKKSQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
255574826274 transcription factor, putative [Ricinus 0.920 0.850 0.691 2e-81
224098720251 predicted protein [Populus trichocarpa] 0.830 0.836 0.694 9e-80
225439493291 PREDICTED: uncharacterized protein LOC10 0.909 0.790 0.567 9e-66
297735640226 unnamed protein product [Vitis vinifera] 0.762 0.853 0.596 4e-63
359486490 613 PREDICTED: uncharacterized protein LOC10 0.889 0.367 0.584 2e-62
297736579 527 unnamed protein product [Vitis vinifera] 0.810 0.388 0.595 1e-61
10178132248 unnamed protein product [Arabidopsis tha 0.897 0.915 0.575 7e-57
18414919246 sequence-specific DNA binding transcript 0.893 0.918 0.573 2e-56
30680994249 sequence-specific DNA binding transcript 0.881 0.895 0.572 4e-55
224112457286 predicted protein [Populus trichocarpa] 0.869 0.769 0.583 3e-54
>gi|255574826|ref|XP_002528320.1| transcription factor, putative [Ricinus communis] gi|223532275|gb|EEF34078.1| transcription factor, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 168/243 (69%), Positives = 195/243 (80%), Gaps = 10/243 (4%)

Query: 13  HAATTGGGREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKK 72
           H +  GGGREDCWSEGAT TLIEAWGDRYV LNRG+LRQKDWKEVA++VNSR+NGVKPKK
Sbjct: 11  HHSRAGGGREDCWSEGATETLIEAWGDRYVNLNRGNLRQKDWKEVADAVNSRQNGVKPKK 70

Query: 73  TDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLIG-NDAVSSKKPANITLRVKSKP 131
           TDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSL+G N+  + +KP  +TL VK KP
Sbjct: 71  TDIQCKNRIDTLKKKYKIEKAKPPPSKWPFYYRLDSLVGVNNHPTKRKPNAVTLTVKRKP 130

Query: 132 RTSFVGRSVSTENDNLSSDGEADDDGDDDEIVVKKVHRMEDVDLSDGAACRELARAILKF 191
                  +V +  +  S   E +D G  DE V+KK HRMEDVD SDGAACRELARAILKF
Sbjct: 131 -------AVYSSTETTSFHEEEEDVG-FDERVIKKEHRMEDVDCSDGAACRELARAILKF 182

Query: 192 GEIYERIESAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQ-RPASSGKK 250
           GEIYERIES+KQ+QM ELEK+R+EF K+VE ER+N+FM AQLE++K   K+ + ASS   
Sbjct: 183 GEIYERIESSKQQQMFELEKQRMEFTKEVEFERLNLFMDAQLELEKQALKRAKYASSTPV 242

Query: 251 SQS 253
            Q+
Sbjct: 243 CQA 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224098720|ref|XP_002311242.1| predicted protein [Populus trichocarpa] gi|222851062|gb|EEE88609.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225439493|ref|XP_002270392.1| PREDICTED: uncharacterized protein LOC100253914 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297735640|emb|CBI18134.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359486490|ref|XP_002272959.2| PREDICTED: uncharacterized protein LOC100251820 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297736579|emb|CBI25450.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|10178132|dbj|BAB11544.1| unnamed protein product [Arabidopsis thaliana] gi|227202542|dbj|BAH56744.1| AT5G05550 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|18414919|ref|NP_568158.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|15010668|gb|AAK73993.1| AT5g05550/MOP10_9 [Arabidopsis thaliana] gi|16974319|gb|AAL31144.1| AT5g05550/MOP10_9 [Arabidopsis thaliana] gi|332003504|gb|AED90887.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|30680994|ref|NP_850774.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] gi|332003505|gb|AED90888.1| sequence-specific DNA binding transcription factor [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|224112457|ref|XP_002316198.1| predicted protein [Populus trichocarpa] gi|222865238|gb|EEF02369.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query253
TAIR|locus:2169722249 AT5G05550 [Arabidopsis thalian 0.877 0.891 0.5 7.2e-52
TAIR|locus:2074658249 AT3G11100 [Arabidopsis thalian 0.893 0.907 0.489 4.6e-50
TAIR|locus:2087472 443 ASIL2 "Arabidopsis 6B-interact 0.371 0.212 0.551 5.2e-39
TAIR|locus:2076401321 AT3G58630 [Arabidopsis thalian 0.395 0.311 0.456 2.4e-35
TAIR|locus:2014445383 ASIL1 "6B-interacting protein 0.387 0.255 0.485 3.6e-33
TAIR|locus:2091757333 AT3G24490 [Arabidopsis thalian 0.857 0.651 0.296 2.4e-21
TAIR|locus:2096134296 AT3G54390 [Arabidopsis thalian 0.355 0.304 0.411 5.2e-21
TAIR|locus:2100108 542 AT3G10030 [Arabidopsis thalian 0.351 0.164 0.371 3.2e-12
TAIR|locus:2042401372 AT2G44730 [Arabidopsis thalian 0.241 0.163 0.426 1.9e-09
TAIR|locus:2087288310 AT3G24860 [Arabidopsis thalian 0.367 0.3 0.295 1.4e-08
TAIR|locus:2169722 AT5G05550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 114/228 (50%), Positives = 145/228 (63%)

Query:    21 REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80
             RED WSE AT TL+EAWG+RYV+LN G+LRQ DWK+VA++VNSR      KKTD+QCKNR
Sbjct:    20 REDWWSEEATATLVEAWGNRYVKLNHGNLRQNDWKDVADAVNSRHGDNSRKKTDLQCKNR 79

Query:    81 IDTLXXXXXXXXXXXXXSKWPFYYRLDSLIGNDAVSSKKPANITLRVKSKPRTSFVGRSV 140
             +DTL             S W FY RLD LIG   V  K    +   VKS P  + +  + 
Sbjct:    80 VDTLKKKYKTEKAKLSPSTWRFYNRLDVLIG--PVVKKSAGGV---VKSAPFKNHLNPTG 134

Query:   141 STEN-DNLSSXXXXXXXXXXXXIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE 199
             S     +L               V +K  R+E+VDLS+G+ CRELA AILKFGE+YERIE
Sbjct:   135 SNSTGSSLEDDDEDDDEVGDWEFVARKHPRVEEVDLSEGSTCRELATAILKFGEVYERIE 194

Query:   200 SAKQKQMMELEKERLEFIKDVECERMNMFMGAQLEIQKSKRKQRPASS 247
               KQ+ M+ELEK+R+E  K+VE +RMNM M  QLEI+KSK ++R ++S
Sbjct:   195 GKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEKSKHRKRASAS 242
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2074658 AT3G11100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087472 ASIL2 "Arabidopsis 6B-interacting protein 1-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076401 AT3G58630 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2014445 ASIL1 "6B-interacting protein 1-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091757 AT3G24490 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096134 AT3G54390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100108 AT3G10030 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042401 AT2G44730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087288 AT3G24860 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
pfam1383784 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-bindi 3e-16
pfam1277696 pfam12776, Myb_DNA-bind_3, Myb/SANT-like DNA-bindi 2e-05
pfam1054584 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase tra 0.001
>gnl|CDD|222409 pfam13837, Myb_DNA-bind_4, Myb/SANT-like DNA-binding domain Back     alignment and domain information 
 Score = 71.5 bits (176), Expect = 3e-16
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 22  EDCWSEGATGTLIEAWGDRYV-RLNRGHLRQKD-WKEVAESVNSRENGVKPKKTDIQCKN 79
            + W++  T  LIE WG+R      RG  R K  W+E+AE +  R       ++  QCK 
Sbjct: 1   RNKWTDEETRALIEIWGERLDSLFQRGTKRNKHVWEEIAEKMAER----GYNRSAEQCKE 56

Query: 80  RIDTLKKKYKIEK--AKPPPSKWPFYYR 105
           +   LKKKYK EK   K   S WPF+  
Sbjct: 57  KWKNLKKKYKKEKESNKGSGSSWPFFEE 84

This presumed domain appears to be related to other Myb/SANT-like DNA binding domains. In particular pfam10545 seems most related. This family is greatly expanded in plants and appears in several proteins annotated as transposon proteins. Length = 84
>gnl|CDD|221767 pfam12776, Myb_DNA-bind_3, Myb/SANT-like DNA-binding domain Back     alignment and domain information
>gnl|CDD|220803 pfam10545, MADF_DNA_bdg, Alcohol dehydrogenase transcription factor Myb/SANT-like Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 253
KOG4282345 consensus Transcription factor GT-2 and related pr 100.0
PF1383790 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; 99.82
PF1277696 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; 98.61
smart0059589 MADF subfamily of SANT domain. 98.54
PF1054585 MADF_DNA_bdg: Alcohol dehydrogenase transcription 98.24
PF1387378 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain 98.22
PF0024948 Myb_DNA-binding: Myb-like DNA-binding domain; Inte 97.84
smart0071749 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi 97.29
PF1392160 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 97.25
cd0016745 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do 97.13
PLN03212249 Transcription repressor MYB5; Provisional 95.39
PLN03091 459 hypothetical protein; Provisional 95.24
PF0450498 DUF573: Protein of unknown function, DUF573; Inter 95.16
PLN03212249 Transcription repressor MYB5; Provisional 93.9
PLN03091 459 hypothetical protein; Provisional 89.95
KOG0457 438 consensus Histone acetyltransferase complex SAGA/A 89.43
KOG1279506 consensus Chromatin remodeling factor subunit and 88.27
COG5259531 RSC8 RSC chromatin remodeling complex subunit RSC8 87.42
PRK13923170 putative spore coat protein regulator protein YlbO 83.21
TIGR02894161 DNA_bind_RsfA transcription factor, RsfA family. I 82.73
KOG0051607 consensus RNA polymerase I termination factor, Myb 81.95
>KOG4282 consensus Transcription factor GT-2 and related proteins, contains trihelix DNA-binding/SANT domain [Transcription] Back     alignment and domain information 
Probab=100.00  E-value=7.8e-32  Score=250.57  Aligned_cols=216  Identities=33%  Similarity=0.442  Sum_probs=150.9

Q ss_pred             CCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC----CC
Q 025430           22 EDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP----PP   97 (253)
Q Consensus        22 ~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~----~~   97 (253)
                      .++|+.+||++||++|+++|..|+++++++++|++||.++...    +++||+.||++||+||+++||++|.+.    ..
T Consensus        54 ~~~Ws~~et~~Li~~~~~~~~~~~~~~~k~~~We~va~k~~~~----g~~rs~~qck~K~~nl~k~Yk~~k~~~~~~~~~  129 (345)
T KOG4282|consen   54 EPRWSEEETLTLIEIRGEMDVALRRGKLKGPLWEEVARKMAEL----GYPRSPKQCKAKIENLKKKYKKEKAKKEGSGEG  129 (345)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHh----CCCCCHHHHHHHHHHHHHHHHHHhcccCCCCCC
Confidence            7999999999999999999999999999999999999987763    588999999999999999999999986    48


Q ss_pred             CCCcchHHHHHhhC-CCCCC---------CCCCCcccccc----cCCCCCC-----------CC-CC-----C---CCCC
Q 025430           98 SKWPFYYRLDSLIG-NDAVS---------SKKPANITLRV----KSKPRTS-----------FV-GR-----S---VSTE  143 (253)
Q Consensus        98 s~W~fFd~LD~Llg-~~~~~---------~~~p~~~~~~~----~~~p~~~-----------~~-~~-----~---~~~~  143 (253)
                      +.|+||+.||.++. ..++.         ...|.++....    ..+|...           .+ .+     .   ....
T Consensus       130 s~~~ff~~le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~  209 (345)
T KOG4282|consen  130 SSWKFFSELEALLITFKARPRSDEVGPGNASAPLTLSVSSEPQFSSNPTELQFDGSSLEDSSQPSGLNEDNSNSSSPEPV  209 (345)
T ss_pred             ccchHHHHHHHHHhccCCCCCCCCCCcccccCccccCCCCCCCCCCCccccccCCCcCCCCCcccccCccccccCCCCCC
Confidence            89999999999997 22210         01111111000    0000000           00 00     0   0000


Q ss_pred             CCC------CCCCCCCCCCCCCh-hhhhhhhcccccccCCcchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 025430          144 NDN------LSSDGEADDDGDDD-EIVVKKVHRMEDVDLSDGAACRELARAILKFGEIYERIE-SAKQKQMMELEKERLE  215 (253)
Q Consensus       144 ~~~------~~sd~~~~~~~~~~-~~~~~k~~r~~~~~~~~g~~~~ela~aI~~f~e~yer~E-~~K~~~~~elEk~Rme  215 (253)
                      .+.      .+++.++..+...+ .....++.+........+..++++++++.+|+++|+++| ..++++|.++|++||+
T Consensus       210 ~~~~~~~~~~s~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~e~~r~~  289 (345)
T KOG4282|consen  210 AGSLSNDTSSSSSPDDSADSEGGKSSSRKRRVRKDGSKEGIEELMREVARSQERLDEVLERVEEKKEQERMSEEEKWRME  289 (345)
T ss_pred             CcchhhccccccchhcccccccCCCCCCCccccccccchhHHHHhhhhhhhHHHHHHHHHHHhccchHhhhhHHHHHHHH
Confidence            000      01111111111110 111111111222222345689999999999999999999 9999999999999999


Q ss_pred             hh---HHHHHHHHHHHHHHHHHHHHhhhc
Q 025430          216 FI---KDVECERMNMFMGAQLEIQKSKRK  241 (253)
Q Consensus       216 f~---kdlE~~r~~~~~~~Q~ei~~~~~~  241 (253)
                      |+   +++|++++++++++|++|+.|+..
T Consensus       290 ~~~r~ke~e~~~~~~~~~~~~~i~~i~~~  318 (345)
T KOG4282|consen  290 EIERNKELELARQERIQETQLEIRSIKAI  318 (345)
T ss_pred             HHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            99   999999999999999999988765

>PF13837 Myb_DNA-bind_4: Myb/SANT-like DNA-binding domain; PDB: 2EBI_A 2JMW_A Back     alignment and domain information
>PF12776 Myb_DNA-bind_3: Myb/SANT-like DNA-binding domain; InterPro: IPR024752 This domain, found in a range of uncharacterised proteins, may be related to Myb/SANT-like DNA binding domains Back     alignment and domain information
>smart00595 MADF subfamily of SANT domain Back     alignment and domain information
>PF10545 MADF_DNA_bdg: Alcohol dehydrogenase transcription factor Myb/SANT-like; InterPro: IPR006578 The MADF (myb/SANT-like domain in Adf-1) domain is an approximately 80-amino-acid module that directs sequence specific DNA binding to a site consisting of multiple tri-nucleotide repeats Back     alignment and domain information
>PF13873 Myb_DNA-bind_5: Myb/SANT-like DNA-binding domain Back     alignment and domain information
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins Back     alignment and domain information
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains Back     alignment and domain information
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A Back     alignment and domain information
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>PF04504 DUF573: Protein of unknown function, DUF573; InterPro: IPR007592 This is a family of uncharacterised proteins Back     alignment and domain information
>PLN03212 Transcription repressor MYB5; Provisional Back     alignment and domain information
>PLN03091 hypothetical protein; Provisional Back     alignment and domain information
>KOG0457 consensus Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics] Back     alignment and domain information
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription] Back     alignment and domain information
>PRK13923 putative spore coat protein regulator protein YlbO; Provisional Back     alignment and domain information
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family Back     alignment and domain information
>KOG0051 consensus RNA polymerase I termination factor, Myb superfamily [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query253
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 2e-10
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Length = 86 Back     alignment and structure
 Score = 54.8 bits (132), Expect = 2e-10
 Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 21  REDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNR 80
           R + W +  T +LI          N     +  W++++  +  RE G    ++   C ++
Sbjct: 3   RAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKM--REKGF--DRSPDMCTDK 58

Query: 81  IDTLKKKYKIEK---AKPPPSKWPFY 103
              L K++K  K        +K  +Y
Sbjct: 59  WRNLLKEFKKAKHHDRGNGSAKMSYY 84

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
2ebi_A86 DNA binding protein GT-1; DNA-binding domain, phos 99.84
3sjm_A64 Telomeric repeat-binding factor 2; human telomeric 97.96
2cu7_A72 KIAA1915 protein; nuclear protein, SANT domain, DN 97.89
2d9a_A60 B-MYB, MYB-related protein B; DNA binding, structu 97.79
1x41_A60 Transcriptional adaptor 2-like, isoform B; transcr 97.76
2elk_A58 SPCC24B10.08C protein; hypothetical protein, struc 97.66
1w0t_A53 Telomeric repeat binding factor 1; telomere, DNA-b 97.64
2yus_A79 SWI/SNF-related matrix-associated actin- dependent 97.62
2dim_A70 Cell division cycle 5-like protein; MYB_DNA-bindin 97.61
2yum_A75 ZZZ3 protein, zinc finger ZZ-type-containing prote 97.58
1guu_A52 C-MYB, MYB proto-oncogene protein; transcription, 97.53
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 97.39
1ity_A69 TRF1; helix-turn-helix, telomeres, DNA binding, MY 97.39
2din_A66 Cell division cycle 5-like protein; MYB_DNA-bindin 97.37
1gvd_A52 MYB proto-oncogene protein; transcription, transcr 97.34
2cqr_A73 RSGI RUH-043, DNAJ homolog subfamily C member 1; m 97.32
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 97.31
2ltp_A89 Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s 96.35
2llk_A73 Cyclin-D-binding MYB-like transcription factor 1; 97.25
2juh_A121 Telomere binding protein TBP1; helix, nucleus, nuc 97.12
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 97.09
2cjj_A93 Radialis; plant development, DNA-binding protein, 97.07
2roh_A122 RTBP1, telomere binding protein-1; plant, nucleus, 97.03
2ckx_A83 NGTRF1, telomere binding protein TBP1; nuclear pro 96.89
2cqq_A72 RSGI RUH-037, DNAJ homolog subfamily C member 1; m 96.8
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.66
2aje_A105 Telomere repeat-binding protein; DNA-binding, Trp, 96.64
1wgx_A73 KIAA1903 protein; MYB DNA-binding domain, human cD 96.51
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 96.31
3osg_A126 MYB21; transcription-DNA complex, MYB2, R2R3 domai 96.3
1h8a_C128 AMV V-MYB, MYB transforming protein; transcription 96.25
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 96.17
2k9n_A107 MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind 96.06
1gv2_A105 C-MYB, MYB proto-oncogene protein; transcription, 96.01
1x58_A62 Hypothetical protein 4930532D21RIK; MUS musculus a 95.75
2eqr_A61 N-COR1, N-COR, nuclear receptor corepressor 1; SAN 95.67
2iw5_B235 Protein corest, REST corepressor 1; oxidoreductase 95.52
1h89_C159 C-MYB, MYB proto-oncogene protein; transcription/D 95.46
1ign_A246 Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, 95.08
3zqc_A131 MYB3; transcription-DNA complex, DNA-binding prote 94.45
1ug2_A95 2610100B20RIK gene product; hypothetical protein, 92.41
2xag_B482 REST corepressor 1; amine oxidase, chromatin regul 91.23
2yqk_A63 Arginine-glutamic acid dipeptide repeats protein; 90.06
1fex_A59 TRF2-interacting telomeric RAP1 protein; helix tur 87.48
3hm5_A93 DNA methyltransferase 1-associated protein 1; DNA 84.41
2lr8_A70 CAsp8-associated protein 2; structural genomics, n 80.87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A* Back     alignment and structure
Probab=99.84  E-value=3.6e-21  Score=146.26  Aligned_cols=82  Identities=17%  Similarity=0.336  Sum_probs=73.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhhCCC---C
Q 025430           20 GREDCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEKAKP---P   96 (253)
Q Consensus        20 ~r~~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK~~~---~   96 (253)
                      .|...||++||.+||++|++...++..+..+...|++||+.|.+++    +.+|+.||++||++|++.||++|+++   +
T Consensus         2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G----~~rs~~qC~~K~~nL~k~Yk~~k~~~~~sG   77 (86)
T 2ebi_A            2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKG----FDRSPDMCTDKWRNLLKEFKKAKHHDRGNG   77 (86)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHCSCSSCCCCCC
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            3678999999999999999999999888877789999999999864    68999999999999999999999985   3


Q ss_pred             CCCCcchHH
Q 025430           97 PSKWPFYYR  105 (253)
Q Consensus        97 ~s~W~fFd~  105 (253)
                      +.+||||++
T Consensus        78 ~~~~~yf~e   86 (86)
T 2ebi_A           78 SAKMSYYKE   86 (86)
T ss_dssp             CCCCCCCCC
T ss_pred             CCCCCCCCc
Confidence            569999973
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A Back     alignment and structure
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus} Back     alignment and structure
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1 Back     alignment and structure
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe} Back     alignment and structure
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A Back     alignment and structure
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Back     alignment and structure
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A Back     alignment and structure
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A Back     alignment and structure
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens} Back     alignment and structure
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa} Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Back     alignment and structure
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa} Back     alignment and structure
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A Back     alignment and structure
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3 Back     alignment and structure
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3 Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A Back     alignment and structure
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3 Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A Back     alignment and structure
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A Back     alignment and structure
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1 Back     alignment and structure
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B* Back     alignment and structure
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C Back     alignment and structure
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A Back     alignment and structure
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis} Back     alignment and structure
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3 Back     alignment and structure
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B* Back     alignment and structure
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3 Back     alignment and structure
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens} Back     alignment and structure
>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query253
d2cjja163 Radialis {Garden snapdragon (Antirrhinum majus) [T 97.85
d1w0ta_52 DNA-binding domain of human telomeric protein, hTR 97.83
d1x41a147 Transcriptional adaptor 2-like, TADA2L, isoform b 97.66
d2cqra160 DnaJ homolog subfamily C member 1 {Human (Homo sap 97.59
d2cu7a165 MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960 97.48
d1ug2a_95 2610100b20rik gene product {Mouse (Mus musculus) [ 97.47
d1w0ua_55 Telomeric repeat binding factor 2, TRF2 {Human (Ho 97.46
d1gv2a247 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.34
d2iw5b165 REST corepressor 1, CoREST {Human (Homo sapiens) [ 97.25
d1guua_50 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.19
d1gvda_52 c-Myb, DNA-binding domain {Mouse (Mus musculus) [T 97.18
d2ckxa183 Telomere binding protein TBP1 {Tobacco (Nicotiana 96.96
d1igna186 DNA-binding domain of rap1 {Baker's yeast (Sacchar 96.86
d1xc5a168 Nuclear receptor corepressor 2 {Human (Homo sapien 96.17
d2cqqa159 DnaJ homolog subfamily C member 1 {Human (Homo sap 94.13
d2crga157 Metastasis associated protein MTA3 {Mouse (Mus mus 86.11
>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=97.85  E-value=2.4e-05  Score=54.30  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=44.1

Q ss_pred             CCCCHHHHHHHHHHHhhHHHhhhcCCCChhhHHHHHHHHHcccCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 025430           23 DCWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVNSRENGVKPKKTDIQCKNRIDTLKKKYKIEK   92 (253)
Q Consensus        23 ~~WSe~ET~~LIdawger~~ql~rg~lr~k~W~eVA~~V~~r~~~~k~~kT~~QCrnKid~LKKrYK~eK   92 (253)
                      ..||.+|-..|++++...    ..++  ...|..||..|.        .||..||++++..|.+..+.+.
T Consensus         2 ~~WT~eEd~~L~~~v~~~----~~~~--~~~W~~Ia~~l~--------gRt~~qc~~r~~~L~~dik~ie   57 (63)
T d2cjja1           2 RPWSAKENKAFERALAVY----DKDT--PDRWANVARAVE--------GRTPEEVKKHYEILVEDIKYIE   57 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHS----CTTC--TTHHHHHHHHST--------TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH----CCCC--chHHHHHHHHcC--------CCCHHHHHHHHHHHHHHhhccc
Confidence            479999999999998432    2221  125999999993        3899999999999999888754
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Back     information, alignment and structure
>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure