Citrus Sinensis ID: 025458

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEELSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSNTILPPPNIHRHS
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccHHHccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccccHHHccccccccccHHHHHHccccccccccc
Coil and Loop (DISEMBL)
manssgnhhqehshghghghghgrhpssfnattpnqsngnsiTLAERWSAIlkhnpgissewtLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEELSRkskdkkervidpsvkpahfaarsnvlpyastiippnyddgfslkaiggnigdTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNtsaimrqmpplpvhlneelsntilpppnihrhs
Flexible Loop (DISEMBL)
manssgnhHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKiavhlnnktvrdvalrcrwmtkkenskrrkeelsrkskdkkervidpsvkpahfaarsnvlpyASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNeelsntilpppnihrhs
Low Complexity Region (SEG)
MANssgnhhqehshghghghghgrhpssFNATTPNQSNGNSITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTkkenskrrkeelsrkskdkkerVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSNTILPPPNIHRHS
Disordered region (IsUnstruct)
*****************************************ITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT*******************************HFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNT********************************
Disordered Region (DISOPRED)
*********************************************************ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRC****************************************************************GGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNT***MRQMPPLPVHLNEELSNTI**********
Disordered Region (DISEMBL)
*************************PSSFNATTPNQSNGNSITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK*********************VIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSNTILPPPNIHRHS
Disordered Region (DISPRO)
****************************************************KHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK**************************************PYASTII*PN*DDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSNTILPP*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKxxxxxxxxxxxxxxxxxxxxxVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSNTILPPPNIHRHS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
449468874	245	PREDICTED: uncharacterized protein LOC10	0.928	0.955	0.598	3e-78
225434010	254	PREDICTED: uncharacterized protein LOC10	0.956	0.948	0.593	2e-75
356550398	232	PREDICTED: uncharacterized protein LOC10	0.892	0.969	0.588	3e-75
356557026	231	PREDICTED: uncharacterized protein LOC10	0.892	0.974	0.584	1e-74
224133336	240	predicted protein [Populus trichocarpa]	0.944	0.991	0.581	5e-73
296081339	206	unnamed protein product [Vitis vinifera]	0.765	0.936	0.666	1e-71
255586382	246	conserved hypothetical protein [Ricinus	0.869	0.890	0.585	1e-66
224092992	218	predicted protein [Populus trichocarpa]	0.789	0.912	0.611	5e-65
356545425	232	PREDICTED: uncharacterized protein LOC10	0.912	0.991	0.542	2e-64
255648345	232	unknown [Glycine max]	0.912	0.991	0.538	5e-64

>gi|449468874|ref|XP_004152146.1| PREDICTED: uncharacterized protein LOC101222201 [Cucumis sativus] gi|449524858|ref|XP_004169438.1| PREDICTED: uncharacterized LOC101222201 [Cucumis sativus]

 Score =  297 bits (760), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 149/249 (59%), Positives = 184/249 (73%), Gaps = 15/249 (6%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAIL--KHNPGI 58
           MAN SGNH +            G+  SSF+   P+  N   +  A+  S+ L  KHNPGI
Sbjct: 1   MANPSGNHQEA-----------GQPSSSFDGGNPSNGNSTPVPAADNSSSALAMKHNPGI 49

Query: 59  SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRK 118
           S++WT +EQ  LE+GL+KYA++ ++ RYAKIA+ L NKTVRDVALRCRWM KKENSKRRK
Sbjct: 50  STDWTSDEQVTLEEGLKKYAAESSVIRYAKIAMQLPNKTVRDVALRCRWMNKKENSKRRK 109

Query: 119 EE--LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDT 176
           EE  L+RK+KDKKERV D S+K A  AAR NV PY   +IP + DDG S KAIGG  G+ 
Sbjct: 110 EEHNLTRKNKDKKERVSDSSMKSAQVAARPNVPPYGMPMIPMDNDDGVSYKAIGGTTGEL 169

Query: 177 LEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNE 236
           LE+NA A+NQIS+NLA+FQIQDNISL CQTRDNIL+I+N++N    +M+QMPPLPV +NE
Sbjct: 170 LEQNAHAMNQISSNLASFQIQDNISLFCQTRDNILKIMNDLNEMPEVMKQMPPLPVKVNE 229

Query: 237 ELSNTILPP 245
           EL+NTILPP
Sbjct: 230 ELANTILPP 238

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434010|ref|XP_002272798.1| PREDICTED: uncharacterized protein LOC100257710 [Vitis vinifera]

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 146/246 (59%), Positives = 180/246 (73%), Gaps = 5/246 (2%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISS 60
           MAN SG H QE  H     +G G +PS+  +  P   N      A   +  +KHNPGI+ 
Sbjct: 1   MANPSGTH-QEPGHASSSFNGGG-NPSN-GSVAPASENSGPPAGAVATATAMKHNPGIAM 57

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
           +WT EEQ++LE+GL  Y+SD  + RYAKIA+ L NKTVRDVALRCRWM+KKENSKRRKE+
Sbjct: 58  DWTPEEQSVLEEGLNAYSSDSNIIRYAKIAMQLQNKTVRDVALRCRWMSKKENSKRRKED 117

Query: 121 --LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLE 178
             LSRKSKDKKE+V +PS K +H A+R+NV PYA  +IP + DDG S KAIGG+ G  LE
Sbjct: 118 HNLSRKSKDKKEKVTEPSAKSSHLASRTNVPPYAMPMIPMDNDDGISYKAIGGSTGQLLE 177

Query: 179 KNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEEL 238
           +NA+A NQISANLA+ QIQDNISL CQ RDNI  ILN++N+   +MRQMPPLPV +NE+L
Sbjct: 178 QNAQAFNQISANLASLQIQDNISLFCQARDNIQAILNDLNDMPEVMRQMPPLPVKINEDL 237

Query: 239 SNTILP 244
            N+ILP
Sbjct: 238 VNSILP 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550398|ref|XP_003543574.1| PREDICTED: uncharacterized protein LOC100819879 [Glycine max]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/250 (58%), Positives = 182/250 (72%), Gaps = 25/250 (10%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISS 60
           MAN SGNH QEH+H               +++ P  S           +  +KHNPGIS 
Sbjct: 2   MANPSGNH-QEHTH-------------VVSSSAPETSGA---------ALAMKHNPGISL 38

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
           +WT EEQAILEDGL KYAS+  + RYAKIA+ L  KTVRDVALR RWM KKENSKRRK++
Sbjct: 39  DWTAEEQAILEDGLSKYASESNIVRYAKIALQLQQKTVRDVALRVRWMNKKENSKRRKDD 98

Query: 121 --LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLE 178
             L+RKSKDKKERV DP+VK ++F ARSNV PYA  +I  + DDG S  AIGG  GD LE
Sbjct: 99  HNLTRKSKDKKERVSDPAVKSSNFVARSNVSPYAPPMIAMDNDDGISYTAIGGPTGDLLE 158

Query: 179 KNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEEL 238
           +NA+ALNQIS NL+AFQ+Q+NI+L CQTRDNIL+I+NE+N++  +M+QMPPLPV +NEEL
Sbjct: 159 QNAQALNQISTNLSAFQVQENINLFCQTRDNILKIMNELNDSPEVMKQMPPLPVKVNEEL 218

Query: 239 SNTILPPPNI 248
           +N+ILP  N+
Sbjct: 219 ANSILPRTNL 228

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356557026|ref|XP_003546819.1| PREDICTED: uncharacterized protein LOC100801419 [Glycine max]

 Score =  285 bits (729), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 146/250 (58%), Positives = 182/250 (72%), Gaps = 25/250 (10%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISS 60
           MAN SGNH QEH+H               +++ P  S           +  +KHNPGIS 
Sbjct: 1   MANPSGNH-QEHTH-------------VVSSSAPETSGA---------ALAMKHNPGISL 37

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
           +WT EEQAILEDGL KYAS+  + RYAKIA+ L  KTVRDVALR RWM KKENSKRRK++
Sbjct: 38  DWTAEEQAILEDGLSKYASESNIVRYAKIALQLQQKTVRDVALRVRWMNKKENSKRRKDD 97

Query: 121 --LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLE 178
             L+RKSKDKKERV DP+VK ++F ARSNV PYA  +I  + DDG S  AIGG  GD LE
Sbjct: 98  HNLTRKSKDKKERVSDPAVKSSNFTARSNVSPYAPPMITMDNDDGISYTAIGGPTGDLLE 157

Query: 179 KNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEEL 238
           +NA+ALNQIS NL+AFQ+Q+NI+L CQTRDNIL+I+NE+N++  +M+QMPPLPV +NEEL
Sbjct: 158 QNAQALNQISTNLSAFQVQENINLFCQTRDNILKIMNELNDSPEVMKQMPPLPVKVNEEL 217

Query: 239 SNTILPPPNI 248
           +++ILP  N+
Sbjct: 218 ASSILPRTNL 227

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133336|ref|XP_002328017.1| predicted protein [Populus trichocarpa] gi|222837426|gb|EEE75805.1| predicted protein [Populus trichocarpa]

 Score =  280 bits (716), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 187/253 (73%), Gaps = 15/253 (5%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISS 60
           MAN SG H+QE + G          PSSFN + PN  NGN +       + LKHNPGIS+
Sbjct: 1   MANPSGTHNQEGNQG----------PSSFNGSNPN--NGN-LGQDPSSGSSLKHNPGISN 47

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
           +WT EEQAILE+GL KYA +  + RYAKIA+ L NKTVRDVALRCRWMTKKENSKRRKE+
Sbjct: 48  DWTGEEQAILEEGLAKYAMETNVVRYAKIALQLPNKTVRDVALRCRWMTKKENSKRRKED 107

Query: 121 -LSRKSKDKKERVIDPSVKPAHF-AARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLE 178
            L RKSKDKKER  DPS K ++F A R NV P+A+ ++P + D+G S   IGG  G+ L 
Sbjct: 108 NLVRKSKDKKERHNDPSAKTSNFMATRPNVTPFATPMMPLDSDEGISYDVIGGVTGELLN 167

Query: 179 KNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEEL 238
           +NA+ L+QISANLA++QIQ+N+SLL QTRDNI +++NEM++   +M+QMPPLPV LN++L
Sbjct: 168 QNAQTLHQISANLASYQIQENLSLLRQTRDNICKVMNEMDDVPELMKQMPPLPVKLNDDL 227

Query: 239 SNTILPPPNIHRH 251
           ++TIL PPN+ R 
Sbjct: 228 ADTILLPPNLPRQ 240

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296081339|emb|CBI17685.3| unnamed protein product [Vitis vinifera]

 Score =  275 bits (704), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/195 (66%), Positives = 159/195 (81%), Gaps = 2/195 (1%)

Query: 52  LKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111
           +KHNPGI+ +WT EEQ++LE+GL  Y+SD  + RYAKIA+ L NKTVRDVALRCRWM+KK
Sbjct: 1   MKHNPGIAMDWTPEEQSVLEEGLNAYSSDSNIIRYAKIAMQLQNKTVRDVALRCRWMSKK 60

Query: 112 ENSKRRKEE--LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAI 169
           ENSKRRKE+  LSRKSKDKKE+V +PS K +H A+R+NV PYA  +IP + DDG S KAI
Sbjct: 61  ENSKRRKEDHNLSRKSKDKKEKVTEPSAKSSHLASRTNVPPYAMPMIPMDNDDGISYKAI 120

Query: 170 GGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPP 229
           GG+ G  LE+NA+A NQISANLA+ QIQDNISL CQ RDNI  ILN++N+   +MRQMPP
Sbjct: 121 GGSTGQLLEQNAQAFNQISANLASLQIQDNISLFCQARDNIQAILNDLNDMPEVMRQMPP 180

Query: 230 LPVHLNEELSNTILP 244
           LPV +NE+L N+ILP
Sbjct: 181 LPVKINEDLVNSILP 195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255586382|ref|XP_002533838.1| conserved hypothetical protein [Ricinus communis] gi|223526217|gb|EEF28540.1| conserved hypothetical protein [Ricinus communis]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 137/234 (58%), Positives = 168/234 (71%), Gaps = 15/234 (6%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSS-FNA-TTPNQSNGNSITLAERWSAILKHNPGI 58
           MAN SG HHQ+           G H SS FN    P   +GNS    E     LKHNPGI
Sbjct: 1   MANPSGVHHQQE----------GNHASSSFNGGNIPTNGHGNS--GPETSGTNLKHNPGI 48

Query: 59  SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRK 118
           S++WTLEEQAILED L +YA++ ++ RYAKIAV L NKTVRDVALRCRWMTKKE SKRRK
Sbjct: 49  STDWTLEEQAILEDALNQYAAESSVIRYAKIAVQLQNKTVRDVALRCRWMTKKEYSKRRK 108

Query: 119 EE-LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTL 177
           E+ L+RKSKDKKERV DPSVK + F ARSNV PYA+++IP  YDDG +   I G  G+ L
Sbjct: 109 EDSLARKSKDKKERVTDPSVKASRFMARSNVHPYATSMIPMEYDDGMAYNGIDGVTGELL 168

Query: 178 EKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLP 231
           ++NA+AL+ ISANL+  Q+Q+NISLLCQTRDNIL+I+N++  TS ++     +P
Sbjct: 169 DQNAKALDHISANLSTMQLQENISLLCQTRDNILKIMNDIKWTSDMLVMCVQMP 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224092992|ref|XP_002309778.1| predicted protein [Populus trichocarpa] gi|222852681|gb|EEE90228.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (647), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 123/201 (61%), Positives = 163/201 (81%), Gaps = 2/201 (0%)

Query: 52  LKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111
           LKHNPGIS++WT EEQ ILE+GL  +A +  + RYAKIA++L NKTVRDVALRCRWM KK
Sbjct: 18  LKHNPGISTDWTFEEQTILEEGLVDFAEETNVVRYAKIAINLPNKTVRDVALRCRWMNKK 77

Query: 112 ENSKRRKEE-LSRKSKDKKERVIDPSVKPAHF-AARSNVLPYASTIIPPNYDDGFSLKAI 169
           E SKRRKE+ L+R+S+DKKER  DPS K ++F AAR +V P+A+ ++P   ++G S  AI
Sbjct: 78  EQSKRRKEDNLARRSRDKKERHGDPSAKTSNFMAARPSVSPFATPMLPLESEEGISYDAI 137

Query: 170 GGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPP 229
           GG  GD L++NA+ LNQISANLA+FQIQ+N++LL +TRDNI +I+N+MN+   +M+QMPP
Sbjct: 138 GGVTGDLLKQNAQILNQISANLASFQIQENLNLLRRTRDNIRKIMNQMNDVPELMKQMPP 197

Query: 230 LPVHLNEELSNTILPPPNIHR 250
           LPV LN++L++TIL PPN+ R
Sbjct: 198 LPVKLNDDLADTILLPPNLPR 218

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545425|ref|XP_003541143.1| PREDICTED: uncharacterized protein LOC100795518 [Glycine max]

 Score =  251 bits (641), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 135/249 (54%), Positives = 169/249 (67%), Gaps = 19/249 (7%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISS 60
           MANSSGNH +E +             SSFN        GN    A   +  +KHNPGI+ 
Sbjct: 1   MANSSGNHEEEQTTHVA---------SSFN--------GNLAPDASPTALAMKHNPGIAL 43

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
           +WTL+EQ ILE+GL  +AS+  LTRYAKIA +LNNKTVRDVALR RWM KKEN KRRK++
Sbjct: 44  DWTLQEQTILEEGLSLFASEPNLTRYAKIAQNLNNKTVRDVALRVRWMNKKENCKRRKDD 103

Query: 121 LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKN 180
             RKSKDKK  V DP+V+ +H+ A+ NV PYA  +   + DDG S  AIGG  G+ LE+N
Sbjct: 104 FPRKSKDKK--VSDPAVRSSHYTAQPNVSPYAPAMTMMDNDDGISHIAIGGPTGELLEQN 161

Query: 181 ARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSN 240
           A+ALN+IS NLAA Q+Q NI+L  QTRDNI++ILN+MN+    M+QMPPLP  +NE + N
Sbjct: 162 AQALNKISTNLAALQLQGNINLFSQTRDNIIKILNDMNDMQEAMKQMPPLPFKINETIFN 221

Query: 241 TILPPPNIH 249
           +IL   N H
Sbjct: 222 SILSKTNQH 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255648345|gb|ACU24624.1| unknown [Glycine max]

 Score =  250 bits (638), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 134/249 (53%), Positives = 169/249 (67%), Gaps = 19/249 (7%)

Query: 1   MANSSGNHHQEHSHGHGHGHGHGRHPSSFNATTPNQSNGNSITLAERWSAILKHNPGISS 60
           MANSSGNH +E +             SSFN        GN    A   +  ++HNPGI+ 
Sbjct: 1   MANSSGNHEEEQTTHVA---------SSFN--------GNLAPDASPTALAMRHNPGIAL 43

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRKEE 120
           +WTL+EQ ILE+GL  +AS+  LTRYAKIA +LNNKTVRDVALR RWM KKEN KRRK++
Sbjct: 44  DWTLQEQTILEEGLSLFASEPNLTRYAKIAQNLNNKTVRDVALRVRWMNKKENCKRRKDD 103

Query: 121 LSRKSKDKKERVIDPSVKPAHFAARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKN 180
             RKSKDKK  V DP+V+ +H+ A+ NV PYA  +   + DDG S  AIGG  G+ LE+N
Sbjct: 104 FPRKSKDKK--VSDPAVRSSHYTAQPNVSPYAPAMTMMDNDDGISHIAIGGPTGELLEQN 161

Query: 181 ARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSN 240
           A+ALN+IS NLAA Q+Q NI+L  QTRDNI++ILN+MN+    M+QMPPLP  +NE + N
Sbjct: 162 AQALNKISTNLAALQLQGNINLFSQTRDNIIKILNDMNDMQEAMKQMPPLPFKINETIFN 221

Query: 241 TILPPPNIH 249
           +IL   N H
Sbjct: 222 SILSKTNQH 230

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2036556	254	AT1G60670 [Arabidopsis thalian	0.837	0.830	0.336	3.5e-27
TAIR|locus:2196480	258	AT1G10820 "AT1G10820" [Arabido	0.746	0.728	0.368	3.2e-26
TAIR|locus:2199302	273	AT1G68160 [Arabidopsis thalian	0.821	0.758	0.337	1.6e-24
TAIR|locus:2058188	210	AT2G43470 "AT2G43470" [Arabido	0.285	0.342	0.421	1.6e-15

TAIR|locus:2036556 AT1G60670 [Arabidopsis thaliana (taxid:3702)]

 Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
 Identities = 73/217 (33%), Positives = 118/217 (54%)

Query:    29 FNATTP-NQSNGNSITLAERWSAI-LKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRY 86
             F+AT+  N S+G  +T+    S   LKH   ++ +W++EEQ ILE GL K+  +  +T+Y
Sbjct:    19 FSATSSMNASSGFHLTVNSPTSVTGLKHEASLAVDWSVEEQYILEKGLSKFKDEPQVTKY 78

Query:    87 AKIAVHLNNKTVRDVALRCRWMTXXXXXXXXXXXXXXXXXXXXXXVIDPSVKPAHFAARS 146
              KIA  L +K+VRDVA+RC+WMT                       + P +       + 
Sbjct:    79 VKIAATLPDKSVRDVAMRCKWMTQKRRKGEEHSTGTKVSYRKVVD-LPPKLNMFSTEPQQ 137

Query:   147 NVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQT 206
             N   YA   +  +    F  + +   + + L +NA+A +QIS+NL+  + QDN+SL    
Sbjct:   138 NAT-YAMNHMCQSARMPF--EGLSDAVMERLRQNAQAFSQISSNLSVCKPQDNVSLFYMA 194

Query:   207 RDNILRILNEMNNTSAIMRQMPPLPVHLNEELSNTIL 243
             R+NI  ILN+M     I+ +MPPLPV +N +L+++++
Sbjct:   195 RNNISAILNDMKEMPGIISRMPPLPVSINNDLASSLV 231

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2196480 AT1G10820 "AT1G10820" [Arabidopsis thaliana (taxid:3702)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 73/198 (36%), Positives = 109/198 (55%)

Query:    49 SAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108
             +A +K    +  +W++EEQ +LE+GL K   +  +++Y KIA  L +KTVRDVALRCRWM
Sbjct:    45 AAGVKQEAALVMDWSVEEQYVLENGLAKLKDEPKISKYVKIAATLPDKTVRDVALRCRWM 104

Query:   109 TXXXXXXXXXXXXXXXXXXXXXXVIDPSVKPAHFAARSNVLPYASTIIPPN---YDDGFS 165
             T                      V+D S  P      SNV P  + +   N   +     
Sbjct:   105 TRKRRKREDNNAAKNISTRK---VVDTS--P-ELNMLSNV-PQQNALYVLNNMCHSTRTP 157

Query:   166 LKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISLLCQTRDNILRILNEMNNTSAIMR 225
              + +   + D L++NA+A +QIS NL+A ++QDNISL  Q R+NI  IL +M     IM 
Sbjct:   158 FEGLSDAVMDLLQQNAQAFSQISYNLSACKLQDNISLFHQARNNISAILTDMKEMPGIMS 217

Query:   226 QMPPLPVHLNEELSNTIL 243
             +MP LPV +N++L++ +L
Sbjct:   218 RMPALPVSINDDLASNLL 235

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2199302 AT1G68160 [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 75/222 (33%), Positives = 115/222 (51%)

Query:    30 NATTPN-QSNGNSITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAK 88
             N  +P     GNS   ++  S  LK +  + SEW+ EEQ IL+ GL+KY    ++  Y +
Sbjct:    48 NVGSPGFLQTGNSSNGSDSGSG-LKLDTSMVSEWSNEEQYILDAGLEKYKDMPSIDMYIQ 106

Query:    89 IAVHLNNKTVRDVALRCRWMTXXXXXXXXXXXXXXXXXXXXXXVID------PSVKPAHF 142
             I   L +K++RD+ALRCRW+                       V        PSV P + 
Sbjct:   107 IGNTLPDKSIRDIALRCRWLRRKRRKSEELNCGRRASSSKGKQVESSSKSSIPSVLPHNM 166

Query:   143 AARSNVLPYASTIIPPNYDDGFSLKAIGGNIGDTLEKNARALNQISANLAAFQIQDNISL 202
             A+     P  ST      +D   L +   N+   +E+N RA +QI ANL++++  DN+ L
Sbjct:   167 ASYPFSGPSTSTSKQITSED---LSSYATNL---IEQNVRAFSQIRANLSSYKAGDNLDL 220

Query:   203 LCQTRDNILRILNEMNNTSAIMRQMPPLPVHLNEELSNTILP 244
               Q R+N++ I NE+NN   +M +MPPLPV +N++LS  ++P
Sbjct:   221 FRQARNNLITIQNEINNMPGLMNKMPPLPVTINDDLS-VMMP 261

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2058188 AT2G43470 "AT2G43470" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 1.6e-15, Sum P(2) = 1.6e-15
 Identities = 32/76 (42%), Positives = 43/76 (56%)

Query:    35 NQSNGNSITLAERWSAILKHNPGISSEWTLEEQAILEDGLQKYASDR--TLTRYAKIAVH 92
             N  +GN  T +E  S++L    GI+  WT  E  IL   L  Y+SD    +TRY +I   
Sbjct:     5 NAYSGNLTTPSE--SSLLISRSGIALNWTTAEDDILIQLLDSYSSDSRSAVTRYLQILEF 62

Query:    93 LNNKTVRDVALRCRWM 108
             L +KT+RDVA R RW+
Sbjct:    63 LQDKTIRDVAARSRWI 78

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam12579	35	pfam12579, DUF3755, Protein of unknown function (D	2e-11
smart00717	49	smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIII	7e-05
cd00167	45	cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-	8e-05
pfam00249	47	pfam00249, Myb_DNA-binding, Myb-like DNA-binding d	0.003

>gnl|CDD|221648 pfam12579, DUF3755, Protein of unknown function (DUF3755)

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 20/35 (57%), Positives = 25/35 (71%)

Query: 192 AAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQ 226
           + FQ+Q+NI L C+TRDNIL ILN+M     IM Q
Sbjct: 1   STFQLQENIDLFCRTRDNILAILNDMREMPGIMSQ 35

This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important. Length = 35

>gnl|CDD|197842 smart00717, SANT, SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

 Score = 39.1 bits (92), Expect = 7e-05
 Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR 106
           EWT EE  +L + ++KY  +     + KIA  L  +T      R R
Sbjct: 3   EWTEEEDELLIELVKKYGKNN----WEKIAKELPGRTAEQCRERWR 44

Length = 49

>gnl|CDD|238096 cd00167, SANT, 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

 Score = 38.7 bits (91), Expect = 8e-05
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR 106
            WT EE  +L + ++KY        + KIA  L  +T +    R R
Sbjct: 1   PWTEEEDELLLEAVKKY----GKNNWEKIAKELPGRTPKQCRERWR 42

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA. Length = 45

>gnl|CDD|215818 pfam00249, Myb_DNA-binding, Myb-like DNA-binding domain

 Score = 34.4 bits (80), Expect = 0.003
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR 106
            WT EE  +L + ++K+ +      ++KIA HL  +T      R  
Sbjct: 3   PWTPEEDELLIEAVKKHGNG----NWSKIAKHLPGRTDNQCKNRWN 44

This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family. Length = 47

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PF12579	35	DUF3755: Protein of unknown function (DUF3755); In	99.69
PF00249	48	Myb_DNA-binding: Myb-like DNA-binding domain; Inte	98.28
smart00717	49	SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-bindi	98.14
cd00167	45	SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding do	98.02
PF13921	60	Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB:	97.5
PLN03212	249	Transcription repressor MYB5; Provisional	96.32
PLN03091	459	hypothetical protein; Provisional	95.32
KOG4167	907	consensus Predicted DNA-binding protein, contains	94.75
TIGR01557	57	myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF c	94.71
PLN03091	459	hypothetical protein; Provisional	93.61
PLN03212	249	Transcription repressor MYB5; Provisional	92.86
KOG0048	238	consensus Transcription factor, Myb superfamily [T	92.59
KOG0048	238	consensus Transcription factor, Myb superfamily [T	92.09
COG5259	531	RSC8 RSC chromatin remodeling complex subunit RSC8	90.61
PF07011	87	DUF1313: Protein of unknown function (DUF1313); In	85.33
KOG0724	335	consensus Zuotin and related molecular chaperones	81.96
KOG1279	506	consensus Chromatin remodeling factor subunit and	80.93

>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length

Probab=99.69  E-value=1e-17  Score=111.36  Aligned_cols=35  Identities=63%  Similarity=1.019  Sum_probs=33.9

Q ss_pred             hhhcccccHHHHHHHHHHHHHHHHHHhhhHHhhcc
Q 025458          192 AAFQIQDNISLLCQTRDNILRILNEMNNTSAIMRQ  226 (252)
Q Consensus       192 ~t~k~qeNidLf~r~RdNI~~IL~~M~~mpgiM~q  226 (252)
                      ++||+|||||||||+||||.+||++|++|||||+|
T Consensus         1 st~q~~eNidLf~~~R~NI~~il~~m~~mpgim~q   35 (35)
T PF12579_consen    1 STFQLQENIDLFCQTRDNILAILNDMNDMPGIMSQ   35 (35)
T ss_pred             CCcchhhhHHHHHHHHHHHHHHHHHHHcchhhhcC
Confidence            58999999999999999999999999999999987

There is a single completely conserved residue N that may be functionally important.

>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins

Probab=98.28  E-value=2e-06  Score=59.02  Aligned_cols=44  Identities=30%  Similarity=0.508  Sum_probs=38.9

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CccHHHHHHHHHh
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN-NKTVRDVALRCRW  107 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp-~KTvrDVAlR~rw  107 (252)
                      ..||.||..+|.+++.+|...    +|.+||..+| +||..+|-.|++-
T Consensus         2 ~~Wt~eE~~~l~~~v~~~g~~----~W~~Ia~~~~~~Rt~~qc~~~~~~   46 (48)
T PF00249_consen    2 GPWTEEEDEKLLEAVKKYGKD----NWKKIAKRMPGGRTAKQCRSRYQN   46 (48)
T ss_dssp             -SS-HHHHHHHHHHHHHSTTT----HHHHHHHHHSSSSTHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCc----HHHHHHHHcCCCCCHHHHHHHHHh
Confidence            379999999999999999887    9999999999 9999999888753

These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....

>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Probab=98.14  E-value=6.3e-06  Score=53.76  Aligned_cols=45  Identities=31%  Similarity=0.493  Sum_probs=40.0

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM  108 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm  108 (252)
                      ..||.||..+|..++..|..    .+|-.||..||+||..||..|++-+
T Consensus         2 ~~Wt~~E~~~l~~~~~~~g~----~~w~~Ia~~~~~rt~~~~~~~~~~~   46 (49)
T smart00717        2 GEWTEEEDELLIELVKKYGK----NNWEKIAKELPGRTAEQCRERWNNL   46 (49)
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            47999999999999999974    4599999999999999998887644

>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains

Probab=98.02  E-value=1.2e-05  Score=51.74  Aligned_cols=42  Identities=33%  Similarity=0.574  Sum_probs=38.0

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458           61 EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR  106 (252)
Q Consensus        61 ~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r  106 (252)
                      .||.||...|..++..|..    .+|.+||..+|+||..||..|+.
T Consensus         1 ~Wt~eE~~~l~~~~~~~g~----~~w~~Ia~~~~~rs~~~~~~~~~   42 (45)
T cd00167           1 PWTEEEDELLLEAVKKYGK----NNWEKIAKELPGRTPKQCRERWR   42 (45)
T ss_pred             CCCHHHHHHHHHHHHHHCc----CCHHHHHhHcCCCCHHHHHHHHH
Confidence            5999999999999999974    56999999999999999987764

Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.

>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A

Probab=97.50  E-value=0.00028  Score=49.84  Aligned_cols=41  Identities=39%  Similarity=0.604  Sum_probs=35.5

Q ss_pred             CCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHh
Q 025458           62 WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRW  107 (252)
Q Consensus        62 WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rw  107 (252)
                      ||.||..+|.++...|..     .|.+||..|+++|..+|-.|++-
T Consensus         1 WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~~Rt~~~~~~r~~~   41 (60)
T PF13921_consen    1 WTKEEDELLLELVKKYGN-----DWKKIAEHLGNRTPKQCRNRWRN   41 (60)
T ss_dssp             S-HHHHHHHHHHHHHHTS------HHHHHHHSTTS-HHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCc-----CHHHHHHHHCcCCHHHHHHHHHH
Confidence            999999999999999964     59999999988999999888888

...

>PLN03212 Transcription repressor MYB5; Provisional

Probab=96.32  E-value=0.0051  Score=56.77  Aligned_cols=44  Identities=20%  Similarity=0.306  Sum_probs=37.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      ...||.||..+|.+.-..|.     .||.+||..||++|  |+++|=||..
T Consensus        78 kgpWT~EED~lLlel~~~~G-----nKWs~IAk~LpGRT--DnqIKNRWns  121 (249)
T PLN03212         78 RGGITSDEEDLILRLHRLLG-----NRWSLIAGRIPGRT--DNEIKNYWNT  121 (249)
T ss_pred             cCCCChHHHHHHHHHHHhcc-----ccHHHHHhhcCCCC--HHHHHHHHHH
Confidence            35899999999998877776     37999999999999  6777888875

>PLN03091 hypothetical protein; Provisional

Probab=95.32  E-value=0.024  Score=56.26  Aligned_cols=44  Identities=16%  Similarity=0.356  Sum_probs=36.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      ...||.||..+|-+.-.+|..     ||.+||..||++|-  .++|=||..
T Consensus        67 KgpWT~EED~lLLeL~k~~Gn-----KWskIAk~LPGRTD--nqIKNRWns  110 (459)
T PLN03091         67 RGTFSQQEENLIIELHAVLGN-----RWSQIAAQLPGRTD--NEIKNLWNS  110 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCc-----chHHHHHhcCCCCH--HHHHHHHHH
Confidence            358999999999999999873     89999999999994  555666643

>KOG4167 consensus Predicted DNA-binding protein, contains SANT and ELM2 domains [Transcription]

Probab=94.75  E-value=0.056  Score=56.65  Aligned_cols=44  Identities=27%  Similarity=0.545  Sum_probs=38.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHH-HHHHHHh
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRD-VALRCRW  107 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrD-VAlR~rw  107 (252)
                      +..||+.|.+.|.++|..|..|     |++|+.||++|||.. |-.=+-|
T Consensus       619 Sd~WTp~E~~lF~kA~y~~~KD-----F~~v~km~~~KtVaqCVeyYYtW  663 (907)
T KOG4167|consen  619 SDKWTPLERKLFNKALYTYSKD-----FIFVQKMVKSKTVAQCVEYYYTW  663 (907)
T ss_pred             cccccHHHHHHHHHHHHHhccc-----HHHHHHHhccccHHHHHHHHHHH
Confidence            6789999999999999999998     999999999999987 4444455

>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class

Probab=94.71  E-value=0.093  Score=38.19  Aligned_cols=48  Identities=17%  Similarity=0.168  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHH---HHHHHHc-CCc-cHHHHHHHHHhhcc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRY---AKIAVHL-NNK-TVRDVALRCRWMTK  110 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry---~KIAa~L-p~K-TvrDVAlR~rwm~~  110 (252)
                      ...||.||...|.+|+..|...    .|   -+|+... ..+ |...|+-+.+-+.-
T Consensus         3 r~~WT~eeh~~Fl~ai~~~G~g----~~a~pk~I~~~~~~~~lT~~qV~SH~QKy~~   55 (57)
T TIGR01557         3 RVVWTEDLHDRFLQAVQKLGGP----DWATPKRILELMVVDGLTRDQVASHLQKYRL   55 (57)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCC----cccchHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            4689999999999999999872    14   5676654 345 99999999887654

This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.

>PLN03091 hypothetical protein; Provisional

Probab=93.61  E-value=0.072  Score=52.97  Aligned_cols=44  Identities=20%  Similarity=0.447  Sum_probs=36.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-CCccHHHHHHHHHhh
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL-NNKTVRDVALRCRWM  108 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L-p~KTvrDVAlR~rwm  108 (252)
                      ...||.||.++|.+++.+|..    ..|.+||..+ +++|.++.  |-||.
T Consensus        14 Kg~WTpEEDe~L~~~V~kyG~----~nWs~IAk~~g~gRT~KQC--RERW~   58 (459)
T PLN03091         14 KGLWSPEEDEKLLRHITKYGH----GCWSSVPKQAGLQRCGKSC--RLRWI   58 (459)
T ss_pred             CCCCCHHHHHHHHHHHHHhCc----CCHHHHhhhhccCcCcchH--hHHHH
Confidence            347999999999999999965    4799999887 49999988  44565

>PLN03212 Transcription repressor MYB5; Provisional

Probab=92.86  E-value=0.13  Score=47.75  Aligned_cols=44  Identities=27%  Similarity=0.485  Sum_probs=36.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-CCccHHHHHHHHHhh
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL-NNKTVRDVALRCRWM  108 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L-p~KTvrDVAlR~rwm  108 (252)
                      ...||.||..+|.++..+|..    .+|.+||..+ +++|.++.-.|  |.
T Consensus        25 Rg~WT~EEDe~L~~lV~kyG~----~nW~~IAk~~g~gRT~KQCReR--W~   69 (249)
T PLN03212         25 RGPWTVEEDEILVSFIKKEGE----GRWRSLPKRAGLLRCGKSCRLR--WM   69 (249)
T ss_pred             CCCCCHHHHHHHHHHHHHhCc----ccHHHHHHhhhcCCCcchHHHH--HH
Confidence            457999999999999999964    4799999988 69999988555  64

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=92.59  E-value=0.16  Score=45.65  Aligned_cols=42  Identities=21%  Similarity=0.370  Sum_probs=36.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHh
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRW  107 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rw  107 (252)
                      .-.||.||..++-++=+.|..     ||.+||..||++|--+|  +=-|
T Consensus        62 rg~fT~eEe~~Ii~lH~~~GN-----rWs~IA~~LPGRTDNeI--KN~W  103 (238)
T KOG0048|consen   62 RGNFSDEEEDLIIKLHALLGN-----RWSLIAGRLPGRTDNEV--KNHW  103 (238)
T ss_pred             CCCCCHHHHHHHHHHHHHHCc-----HHHHHHhhCCCcCHHHH--HHHH
Confidence            468999999999999888865     59999999999998888  5456

>KOG0048 consensus Transcription factor, Myb superfamily [Transcription]

Probab=92.09  E-value=0.14  Score=45.97  Aligned_cols=45  Identities=16%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN-NKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp-~KTvrDVAlR~rwm~  109 (252)
                      --.||+||..+|-+...+|...    +|.-||..++ +++=+  ..|.||+.
T Consensus         9 kGpWt~EED~~L~~~V~~~G~~----~W~~i~k~~gl~R~GK--SCRlRW~N   54 (238)
T KOG0048|consen    9 KGPWTQEEDLTQIRSIKSFGKH----NGTALPKLAGLRRCGK--SCRLRWTN   54 (238)
T ss_pred             CCCCChHHHHHHHHHHHHhCCC----CcchhhhhcCCCccch--HHHHHhhc
Confidence            3589999999999999999766    9999999999 44333  67999975

>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]

Probab=90.61  E-value=0.38  Score=48.38  Aligned_cols=50  Identities=26%  Similarity=0.524  Sum_probs=45.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcccch
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKEN  113 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~Ke~  113 (252)
                      ...||.+|.-.|-+|...|.+|     |.|||....+||+.+-++|.-.+.--++
T Consensus       279 dk~WS~qE~~LLLEGIe~ygDd-----W~kVA~HVgtKt~EqCIl~FL~LPieD~  328 (531)
T COG5259         279 DKNWSRQELLLLLEGIEMYGDD-----WDKVARHVGTKTKEQCILHFLQLPIEDN  328 (531)
T ss_pred             cccccHHHHHHHHHHHHHhhhh-----HHHHHHHhCCCCHHHHHHHHHcCCcchh
Confidence            3489999999999999999998     9999999999999999999988775544

>PF07011 DUF1313: Protein of unknown function (DUF1313); InterPro: IPR009741 This family consists of several hypothetical plant proteins of around 100 residues in length

Probab=85.33  E-value=2.4  Score=33.80  Aligned_cols=51  Identities=24%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhhhccc----ccHHHHHHHHHHHHHHHHHHhhhHH
Q 025458          171 GNIGDTLEKNARALNQISANLAAFQIQ----DNISLLCQTRDNILRILNEMNNTSA  222 (252)
Q Consensus       171 ~~~~~LLEqNaqlLnQI~aNL~t~k~q----eNidLf~r~RdNI~~IL~~M~~mpg  222 (252)
                      ..++.+|+||--|++||..|=. .++-    -|..|......||..+..--+++..
T Consensus        16 ~qVQ~iLDqNR~LI~eINqNHe-Sr~PdnL~RNV~LIrELN~NI~rVv~lY~dLs~   70 (87)
T PF07011_consen   16 VQVQSILDQNRLLINEINQNHE-SRIPDNLSRNVGLIRELNGNISRVVDLYSDLSS   70 (87)
T ss_pred             HHHHHHHHHhHHHHHHHhhccc-ccCCchhhHhHHHHHHHHhhHHHHHHHHHHHhH
Confidence            3568999999999999999986 3443    4669999999999999875555443

The function of this family is unknown.

>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]

Probab=81.96  E-value=1.5  Score=40.67  Aligned_cols=48  Identities=29%  Similarity=0.241  Sum_probs=42.0

Q ss_pred             CCCCHHHHHHHHHHHhhhcCC-c--hhhHHHHHHHHcCC-ccHHHHHHHHHh
Q 025458           60 SEWTLEEQAILEDGLQKYASD-R--TLTRYAKIAVHLNN-KTVRDVALRCRW  107 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e-~--~v~Ry~KIAa~Lp~-KTvrDVAlR~rw  107 (252)
                      ..|+.++.+.++.+|+.|..+ +  +..+|-+++++||. +++.|+.-++.-
T Consensus        32 ~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~~~~~~l~~~~~~~~~~~~~~~   83 (335)
T KOG0724|consen   32 SLWTEEEFKKIEKALAILDDDEPRRTPDSWDKFAEALPLEKRLEDKIEEYIG   83 (335)
T ss_pred             hhhHHHHHHHHHHHHHHHhccccccchhhhhHHHhcCccccccchhHHhhhh
Confidence            569999999999999999974 4  99999999999999 998888766544

>KOG1279 consensus Chromatin remodeling factor subunit and related transcription factors [Chromatin structure and dynamics]

Probab=80.93  E-value=3.2  Score=42.13  Aligned_cols=58  Identities=19%  Similarity=0.394  Sum_probs=50.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcccchhhhh
Q 025458           55 NPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRR  117 (252)
Q Consensus        55 ~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~Ke~~kRR  117 (252)
                      .....-.||.+|.-.|.+++.+|.++     |.|||.....||.-|-.++...+.-++.-...
T Consensus       249 ~~~~~~~WT~qE~lLLLE~ie~y~dd-----W~kVa~hVg~ks~eqCI~kFL~LPieD~~l~~  306 (506)
T KOG1279|consen  249 GESARPNWTEQETLLLLEAIEMYGDD-----WNKVADHVGTKSQEQCILKFLRLPIEDPYLAK  306 (506)
T ss_pred             cccCCCCccHHHHHHHHHHHHHhccc-----HHHHHhccCCCCHHHHHHHHHhcCccchhhhh
Confidence            34466799999999999999999999     99999999999999999999998877654443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	6e-10
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	3e-08
2cjj_A	93	Radialis; plant development, DNA-binding protein,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	6e-05
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	2e-04
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	2e-04
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	3e-04
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	7e-04

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 53.4 bits (128), Expect = 6e-10
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 62  WTLEEQAILEDGLQKY-ASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK 111
           WT+EEQ  LE  L KY   +    R+ KIA  L N+T + VA + +    K
Sbjct: 11  WTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK 61

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 73

 Score = 48.3 bits (115), Expect = 3e-08
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 59  SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK 110
              WT  +Q +LE  LQ+Y    +   + KIA  + +K+  D   R + +  
Sbjct: 18  EEPWTQNQQKLLELALQQYPRG-SSDCWDKIARCVPSKSKEDCIARYKLLVS 68

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3 Length = 93

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 55  NPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108
             G    W+ +E    E  L  Y  D T  R+A +A  +  +T  +V      +
Sbjct: 4   TRGSGRPWSAKENKAFERALAVYDKD-TPDRWANVARAVEGRTPEEVKKHYEIL 56

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 3e-05
 Identities = 33/197 (16%), Positives = 72/197 (36%), Gaps = 43/197 (21%)

Query: 81  RTL--TRYAKIAVHLNNKTVRDVAL--RCRWMTKKENSKRRKEELSRKSKDKKERVIDPS 136
           + L  TR+ ++   L+  T   ++L      +T  E      + L  K  D + + +   
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV-----KSLLLKYLDCRPQDLPRE 321

Query: 137 VKPAHFAARSNVLPYASTIIPPNYDDGFS----LKAIGGN-IGDTLEKNARALNQISAN- 190
           V   +        P   +II  +  DG +     K +  + +   +E    +LN +    
Sbjct: 322 VLTTN--------PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES---SLNVLEPAE 370

Query: 191 -------LAAFQIQDNIS--LLC-----QTRDNILRILNEMNNTSAIMRQMPPLPVHLNE 236
                  L+ F    +I   LL        + +++ ++N+++  S + +Q     + +  
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 237 ---ELSNTILPPPNIHR 250
              EL   +     +HR
Sbjct: 431 IYLELKVKLENEYALHR 447

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3 Length = 72

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 6/74 (8%)

Query: 53  KHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRC-RWMTKK 111
             + G S +WT+EE+ + E GL K+        + KI+  + ++TV  V     ++   K
Sbjct: 3   SGSSGYSVKWTIEEKELFEQGLAKFGRR-----WTKISKLIGSRTVLQVKSYARQYFKNK 57

Query: 112 ENSKRRKEELSRKS 125
                 KE  ++K+
Sbjct: 58  VKCGLDKETPNQKT 71

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene} Length = 74

 Score = 38.3 bits (89), Expect = 2e-04
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 55  NPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDV 101
             G    W   E    E  L     D T  R+ K+A ++  +T  +V
Sbjct: 16  TRGSGRPWKFSENIAFEIALSFTNKD-TPDRWKKVAQYVKGRTPEEV 61

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens} Length = 89

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 14/72 (19%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 59  SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRK 118
              WT EE    + GL ++  +     ++ IA  + +KTV           K++N     
Sbjct: 16  FQGWTEEEMGTAKKGLLEHGRN-----WSAIARMVGSKTVSQCKNFYFNYKKRQNLDEIL 70

Query: 119 EELSRKSKDKKE 130
           ++   K + ++ 
Sbjct: 71  QQHKLKMEKERN 82

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%), Gaps = 9/36 (25%)

Query: 65 EEQAI--LEDGLQKYASDRTLTRYAKIAVHLNNKTV 98
          E+QA+  L+  L+ YA D        +A+     T+
Sbjct: 18 EKQALKKLQASLKLYADDSA----PALAI---KATM 46

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens} Length = 79

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 5/50 (10%)

Query: 55  NPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALR 104
                 EWT +E  +L + L+ Y  D     + K++ H+ ++T  +  L 
Sbjct: 14  GASAGREWTEQETLLLLEALEMYKDD-----WNKVSEHVGSRTQDECILH 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
4eef_G	74	F-HB80.4, designed hemagglutinin binding protein;	99.12
1wgx_A	73	KIAA1903 protein; MYB DNA-binding domain, human cD	99.1
2cjj_A	93	Radialis; plant development, DNA-binding protein,	98.98
2cqq_A	72	RSGI RUH-037, DNAJ homolog subfamily C member 1; m	98.94
2cqr_A	73	RSGI RUH-043, DNAJ homolog subfamily C member 1; m	98.92
2yum_A	75	ZZZ3 protein, zinc finger ZZ-type-containing prote	98.81
2eqr_A	61	N-COR1, N-COR, nuclear receptor corepressor 1; SAN	98.67
2yqk_A	63	Arginine-glutamic acid dipeptide repeats protein;	98.34
2crg_A	70	Metastasis associated protein MTA3; transcription	98.32
2cu7_A	72	KIAA1915 protein; nuclear protein, SANT domain, DN	98.32
2yus_A	79	SWI/SNF-related matrix-associated actin- dependent	98.25
1x41_A	60	Transcriptional adaptor 2-like, isoform B; transcr	98.1
2elk_A	58	SPCC24B10.08C protein; hypothetical protein, struc	97.96
2iw5_B	235	Protein corest, REST corepressor 1; oxidoreductase	97.89
2d9a_A	60	B-MYB, MYB-related protein B; DNA binding, structu	97.88
1guu_A	52	C-MYB, MYB proto-oncogene protein; transcription,	97.87
2din_A	66	Cell division cycle 5-like protein; MYB_DNA-bindin	97.82
4a69_C	94	Nuclear receptor corepressor 2; transcription, hyd	97.77
1w0t_A	53	Telomeric repeat binding factor 1; telomere, DNA-b	97.77
1gvd_A	52	MYB proto-oncogene protein; transcription, transcr	97.76
2ltp_A	89	Nuclear receptor corepressor 2; SMRT, TRAC, SGC, s	96.91
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	97.64
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.61
2dim_A	70	Cell division cycle 5-like protein; MYB_DNA-bindin	97.6
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.53
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	97.45
1ity_A	69	TRF1; helix-turn-helix, telomeres, DNA binding, MY	97.44
3sjm_A	64	Telomeric repeat-binding factor 2; human telomeric	97.44
2llk_A	73	Cyclin-D-binding MYB-like transcription factor 1;	97.41
1gv2_A	105	C-MYB, MYB proto-oncogene protein; transcription,	97.37
2k9n_A	107	MYB24; R2R3 domain, DNA-binding, nucleus, DNA bind	97.31
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	97.31
3osg_A	126	MYB21; transcription-DNA complex, MYB2, R2R3 domai	97.2
1h8a_C	128	AMV V-MYB, MYB transforming protein; transcription	97.17
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	96.97
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.95
1x58_A	62	Hypothetical protein 4930532D21RIK; MUS musculus a	96.84
1ug2_A	95	2610100B20RIK gene product; hypothetical protein,	96.7
3zqc_A	131	MYB3; transcription-DNA complex, DNA-binding prote	96.66
2ckx_A	83	NGTRF1, telomere binding protein TBP1; nuclear pro	96.64
1h89_C	159	C-MYB, MYB proto-oncogene protein; transcription/D	96.6
2aje_A	105	Telomere repeat-binding protein; DNA-binding, Trp,	96.21
2xag_B	482	REST corepressor 1; amine oxidase, chromatin regul	96.17
2roh_A	122	RTBP1, telomere binding protein-1; plant, nucleus,	95.52
1ign_A	246	Protein (RAP1); RAP1,yeast,telomeres,homoeodomain,	95.5
2juh_A	121	Telomere binding protein TBP1; helix, nucleus, nuc	95.2
2lr8_A	70	CAsp8-associated protein 2; structural genomics, n	93.77
3hm5_A	93	DNA methyltransferase 1-associated protein 1; DNA	93.48
1ofc_X	304	ISWI protein; nuclear protein, chromatin remodelin	91.66
1irz_A	64	ARR10-B; helix-turn-helix, DNA binding protein; NM	88.78
1fex_A	59	TRF2-interacting telomeric RAP1 protein; helix tur	88.42
4b4c_A	211	Chromodomain-helicase-DNA-binding protein 1; chrom	84.27

>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}

Probab=99.12  E-value=4.3e-12  Score=95.91  Aligned_cols=48  Identities=23%  Similarity=0.331  Sum_probs=42.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR  106 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r  106 (252)
                      .+..||.||+++||.+|+.|+.+ .++||.|||+.+|+||+.||.-+++
T Consensus        19 ss~~WT~eE~K~FE~ALa~yp~~-tpdRWekIA~~VpGKT~eEVk~hY~   66 (74)
T 4eef_G           19 SGRPWKFSENIAFEIALSFTNKD-TPDRWKKVAQYVKGRTPEEVKKHYE   66 (74)
T ss_dssp             ---CCCTTHHHHHHHHTSSSCSS-CCSSSTTTGGGSCSSCHHHHHGGGC
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCC-CCcHHHHHHHHcCCCCHHHHHHHHH
Confidence            35689999999999999999988 7999999999999999999987664

>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=99.10  E-value=1e-10  Score=88.05  Aligned_cols=52  Identities=10%  Similarity=0.182  Sum_probs=47.7

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||+++||++|+.|+.+ .+.||.+||+.+|+||+.||.-|+..+.+.
T Consensus         8 ~~~WT~eE~k~fe~ALa~~~~~-tp~rWe~IA~~V~gKT~eE~~~hY~~l~~~   59 (73)
T 1wgx_A            8 DKEWNEKELQKLHCAFASLPKH-KPGFWSEVAAAVGSRSPEECQRKYMENPRG   59 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSS-SSSHHHHHHHHTTTSCHHHHHHHHHHSSSS
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC-CccHHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            3579999999999999999988 789999999999999999999999988543

>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3

Probab=98.98  E-value=6.3e-10  Score=86.77  Aligned_cols=52  Identities=23%  Similarity=0.433  Sum_probs=47.2

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||+++|+++|++|+.+ ...||.+||+.||+||+.+|..|+.-+..+
T Consensus         8 ~~~WT~eEd~~L~~al~~~~~~-~~~rW~~IA~~vpGRT~~q~k~ry~~l~~d   59 (93)
T 2cjj_A            8 GRPWSAKENKAFERALAVYDKD-TPDRWANVARAVEGRTPEEVKKHYEILVED   59 (93)
T ss_dssp             CCSCCHHHHHHHHHHHHHSCTT-CTTHHHHHHHHSTTCCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            4689999999999999999988 679999999999999999999998877543

>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.94  E-value=1.2e-09  Score=81.50  Aligned_cols=49  Identities=31%  Similarity=0.535  Sum_probs=44.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      ...||.||+++||.+|++|+.+ ...||.+||+.| +||+.||.-|++-+.
T Consensus         8 ~~~WT~eE~k~fe~al~~~p~~-t~~RW~~IA~~l-gRt~~eV~~~y~~L~   56 (72)
T 2cqq_A            8 APEWTEEDLSQLTRSMVKFPGG-TPGRWEKIAHEL-GRSVTDVTTKAKQLK   56 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTT-CTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC-CCcHHHHHHHHh-CCCHHHHHHHHHHHH
Confidence            4579999999999999999988 789999999998 899999998877664

>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.92  E-value=2.7e-09  Score=79.83  Aligned_cols=52  Identities=27%  Similarity=0.427  Sum_probs=46.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK  110 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~  110 (252)
                      ....||.||+++|+++|.+|+.+ ...||.+||+.||+||+.+|-.|+.-+..
T Consensus        17 ~~~~WT~eEd~~L~~al~~~g~~-~~~rW~~IA~~vpGRT~~qcr~Ry~~L~~   68 (73)
T 2cqr_A           17 AEEPWTQNQQKLLELALQQYPRG-SSDCWDKIARCVPSKSKEDCIARYKLLVS   68 (73)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSS-SHHHHHHHGGGCSSSCHHHHHHHHHHHHS
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCC-CCchHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            34689999999999999999987 78999999999999999999999876643

>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=7.1e-09  Score=76.21  Aligned_cols=53  Identities=38%  Similarity=0.488  Sum_probs=47.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDR-TLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~-~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||+.+|++++.+|..+. .+.+|.+||..||++|.++|..|++++..+
T Consensus         8 ~~~WT~eEd~~L~~~v~~~g~~~~~~~~W~~IA~~~~~Rt~~qcr~r~~~~l~~   61 (75)
T 2yum_A            8 NQLWTVEEQKKLEQLLIKYPPEEVESRRWQKIADELGNRTAKQVASQVQKYFIK   61 (75)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCCCSCHHHHHHHHHHHHSSSCHHHHHHHHHHHHGG
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            35899999999999999999763 578999999999999999999999877655

>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.67  E-value=3.4e-08  Score=70.68  Aligned_cols=44  Identities=27%  Similarity=0.391  Sum_probs=38.8

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR  106 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r  106 (252)
                      ....||.||.++|+++|.+|+.     +|.+||..||+||+.||..++-
T Consensus        11 ~~~~WT~eE~~~F~~~~~~~gk-----~w~~Ia~~l~~rt~~~~v~~Yy   54 (61)
T 2eqr_A           11 FMNVWTDHEKEIFKDKFIQHPK-----NFGLIASYLERKSVPDCVLYYY   54 (61)
T ss_dssp             CCCSCCHHHHHHHHHHHHHSTT-----CHHHHHHHCTTSCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHH
Confidence            4578999999999999999975     4999999999999999876543

>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.34  E-value=7.3e-07  Score=64.33  Aligned_cols=47  Identities=26%  Similarity=0.427  Sum_probs=39.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV-HLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa-~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||.++||++|.+|..+     |.+||. +||+||+.||. +.=.+-||
T Consensus         9 ~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v-~fYY~wKk   56 (63)
T 2yqk_A            9 EKCWTEDEVKRFVKGLRQYGKN-----FFRIRKELLPNKETGELI-TFYYYWKK   56 (63)
T ss_dssp             CCSCCHHHHHHHHHHHHHTCSC-----HHHHHHHSCTTSCHHHHH-HHHHHHHC
T ss_pred             CCCcCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCcHHHHH-HHHhcccC
Confidence            4689999999999999999998     999998 69999999995 33334444

>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3

Probab=98.32  E-value=7.6e-07  Score=65.63  Aligned_cols=44  Identities=25%  Similarity=0.447  Sum_probs=39.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCccHHHHHHHHH
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV-HLNNKTVRDVALRCR  106 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa-~Lp~KTvrDVAlR~r  106 (252)
                      ....||+||.++||++|.+|..+     |-+||. +||+|||.||..=+-
T Consensus         7 ~~~~WT~eE~~~Fe~~l~~yGKd-----f~~I~~~~v~~Kt~~~~v~fYY   51 (70)
T 2crg_A            7 GMEEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYY   51 (70)
T ss_dssp             SSCCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHhCcc-----HHHHHHHHcCCCCHHHHHHHHH
Confidence            35689999999999999999998     999999 699999999986554

>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3

Probab=98.32  E-value=5.5e-07  Score=65.88  Aligned_cols=48  Identities=35%  Similarity=0.609  Sum_probs=43.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.+++..|..     +|.+||..||++|..+|--|++.+.++
T Consensus         9 ~~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~r~~~~l~~   56 (72)
T 2cu7_A            9 SVKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYFKN   56 (72)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            358999999999999999987     799999999999999999988887655

>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}

Probab=98.25  E-value=1.2e-06  Score=66.10  Aligned_cols=50  Identities=22%  Similarity=0.453  Sum_probs=42.9

Q ss_pred             cCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458           54 HNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM  108 (252)
Q Consensus        54 ~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm  108 (252)
                      ........||.||..+|.+++.+|.     .+|.+||..+|+||.++|..|..-+
T Consensus        13 ~~~~~~~~WT~eEd~~Ll~~v~~~G-----~~W~~IA~~v~~RT~~qcr~r~~~~   62 (79)
T 2yus_A           13 KGASAGREWTEQETLLLLEALEMYK-----DDWNKVSEHVGSRTQDECILHFLRL   62 (79)
T ss_dssp             CSSCCSCCCCHHHHHHHHHHHHHSS-----SCHHHHHHHHSSCCHHHHHHHHTTS
T ss_pred             cccccCCCcCHHHHHHHHHHHHHhC-----CCHHHHHHHcCCCCHHHHHHHHHHh
Confidence            3344567999999999999999998     4799999999999999998776554

>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1

Probab=98.10  E-value=3.1e-06  Score=59.92  Aligned_cols=48  Identities=15%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK  110 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~  110 (252)
                      ...||.||..+|.+++.+|..    .+|.+||..||++|.+++.-|...+..
T Consensus         8 ~~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~r~~~~l~   55 (60)
T 1x41_A            8 DPSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYMKYFS   55 (60)
T ss_dssp             CSSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHHCc----CcHHHHHHHhCCCCHHHHHHHHHHHcc
Confidence            357999999999999999974    479999999999999999888776543

>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}

Probab=97.96  E-value=1.2e-05  Score=56.64  Aligned_cols=46  Identities=20%  Similarity=0.289  Sum_probs=39.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC-CccHHHHHHHHHhh
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN-NKTVRDVALRCRWM  108 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp-~KTvrDVAlR~rwm  108 (252)
                      ...||.||..+|.+++.+|.    ..+|.+||..+| ++|.+++..|...+
T Consensus         9 ~~~WT~eED~~L~~~v~~~G----~~~W~~IA~~~~~~Rt~~qcr~r~~~~   55 (58)
T 2elk_A            9 DENWGADEELLLIDACETLG----LGNWADIADYVGNARTKEECRDHYLKT   55 (58)
T ss_dssp             CCCCCHHHHHHHHHHHHHTT----TTCHHHHHHHHCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHC----cCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence            35799999999999999996    357999999999 99999997776543

>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*

Probab=97.89  E-value=1.8e-05  Score=70.90  Aligned_cols=49  Identities=27%  Similarity=0.415  Sum_probs=42.7

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ....||.||.++|+++|.+|..+     |.+||..|++||+.+|--.+.+..+|
T Consensus       132 ~s~~WTeEE~~lFleAl~kYGKD-----W~~IAk~VgTKT~~QcKnfY~~~kKR  180 (235)
T 2iw5_B          132 CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRR  180 (235)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC-----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            45699999999999999999987     99999999999999997766655443

>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}

Probab=97.88  E-value=1.7e-05  Score=55.76  Aligned_cols=49  Identities=20%  Similarity=0.345  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.++..+|..    .+|.+||..||++|..++--|.+.+.+.
T Consensus         8 k~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~l~p   56 (60)
T 2d9a_A            8 KVKWTHEEDEQLRALVRQFGQ----QDWKFLASHFPNRTDQQCQYRWLRVLSG   56 (60)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCT----TCHHHHHHHCSSSCHHHHHHHHHHTSCS
T ss_pred             CCCCCHHHHHHHHHHHHHhCC----CCHHHHHHHccCCCHHHHHHHHHHHcCC
Confidence            358999999999999999963    4799999999999999887776655443

>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A

Probab=97.87  E-value=1.7e-05  Score=54.15  Aligned_cols=45  Identities=24%  Similarity=0.315  Sum_probs=39.3

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM  108 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm  108 (252)
                      ..||.||..+|.++..+|..    .+|.+||..||++|..++--|.+-+
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~   48 (52)
T 1guu_A            4 TRWTREEDEKLKKLVEQNGT----DDWKVIANYLPNRTDVQCQHRWQKV   48 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCS----SCHHHHHHTSTTCCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CCHHHHHHHcCCCCHHHHHHHHHHH
Confidence            57999999999999999975    3699999999999999887776544

>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.82  E-value=1.3e-05  Score=57.33  Aligned_cols=47  Identities=19%  Similarity=0.310  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.++...|..     +|.+||. +|++|.++|--|++.+.++
T Consensus         9 k~~WT~eED~~L~~~~~~~g~-----~W~~Ia~-~~gRt~~qcr~Rw~~~l~~   55 (66)
T 2din_A            9 KTEWSREEEEKLLHLAKLMPT-----QWRTIAP-IIGRTAAQCLEHYEFLLDK   55 (66)
T ss_dssp             CCCCCHHHHHHHHHHHHHCTT-----CHHHHHH-HHSSCHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCC-----CHHHHhc-ccCcCHHHHHHHHHHHhCh
Confidence            358999999999999888864     7999999 9999999998887776655

>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A

Probab=97.77  E-value=3.5e-05  Score=59.66  Aligned_cols=50  Identities=20%  Similarity=0.396  Sum_probs=41.6

Q ss_pred             cccccCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHH
Q 025458           50 AILKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRC  105 (252)
Q Consensus        50 ~~lk~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~  105 (252)
                      .-+|.. .....||.||..+|+++|..|+.+     |-+||..||+||+.|+..=+
T Consensus        35 ~~~~~r-~~~~~WT~eE~~~F~~~~~~~gK~-----F~~Ia~~l~~Kt~~~cV~~Y   84 (94)
T 4a69_C           35 KVYKDR-QVMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYY   84 (94)
T ss_dssp             HHHHHH-HHTCCCCHHHHHHHHHHHHHSTTC-----HHHHHHTCTTCCHHHHHHHH
T ss_pred             HHHhcc-CCCCCCCHHHHHHHHHHHHHcCCC-----HHHHHHHcCCCCHHHHHHHH
Confidence            334433 235789999999999999999887     89999999999999998544

>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A

Probab=97.77  E-value=3.3e-05  Score=53.12  Aligned_cols=47  Identities=34%  Similarity=0.538  Sum_probs=39.8

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CccHHHHHHHHHhhcc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN--NKTVRDVALRCRWMTK  110 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp--~KTvrDVAlR~rwm~~  110 (252)
                      ..||.||..+|.++..+|..    .+|.+||..+|  ++|..++--|.+-+.+
T Consensus         3 ~~WT~eEd~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~k   51 (53)
T 1w0t_A            3 QAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKK   51 (53)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHcCCCCCCHHHHHHHHHHHHc
Confidence            47999999999999999963    47999999999  9998888777665544

>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A

Probab=97.76  E-value=2.9e-05  Score=53.03  Aligned_cols=44  Identities=32%  Similarity=0.438  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHh
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRW  107 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rw  107 (252)
                      ..||.||..+|.+++.+|..    .+|.+||..||++|..++-.|...
T Consensus         4 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~~~~Rt~~qcr~Rw~~   47 (52)
T 1gvd_A            4 GPWTKEEDQRLIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHN   47 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCc----ChHHHHHHHcCCCCHHHHHHHHHH
Confidence            47999999999999999964    469999999999998877666543

>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}

Probab=96.91  E-value=4.4e-06  Score=63.78  Aligned_cols=47  Identities=26%  Similarity=0.294  Sum_probs=40.9

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ..||.||..+|.+++..|..     +|.+||..||++|.++|-.|...+.++
T Consensus        17 ~~WT~eEd~~l~~~~~~~G~-----~W~~IA~~l~gRt~~q~k~r~~~~lrk   63 (89)
T 2ltp_A           17 QGWTEEEMGTAKKGLLEHGR-----NWSAIARMVGSKTVSQCKNFYFNYKKR   63 (89)
Confidence            47999999999999999964     599999999999999888777665544

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=97.64  E-value=4.9e-05  Score=58.31  Aligned_cols=48  Identities=23%  Similarity=0.376  Sum_probs=40.1

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.+++..|..     +|.+||..||++|..+|.-|.+-+.++
T Consensus        56 ~~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~~~~  103 (105)
T 1gv2_A           56 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR  103 (105)
T ss_dssp             CCCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHHHTC-
T ss_pred             ccCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999974     699999999999988777766655443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.61  E-value=5.8e-05  Score=58.53  Aligned_cols=48  Identities=21%  Similarity=0.512  Sum_probs=41.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.+++..|..     +|.+||..||++|-.+|.-|.+-+.++
T Consensus        53 ~~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~r~  100 (107)
T 2k9n_A           53 TDPWSPEEDMLLDQKYAEYGP-----KWNKISKFLKNRSDNNIRNRWMMIARH  100 (107)
T ss_dssp             TCCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHHHHhCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhh
Confidence            368999999999999999985     699999999999988887776665544

>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.60  E-value=6.6e-05  Score=54.25  Aligned_cols=48  Identities=23%  Similarity=0.394  Sum_probs=41.2

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      -.||.||..+|.++..+|..    .+|.+||..||++|.+++-.|.+.+.+.
T Consensus        10 ~~Wt~eED~~L~~~v~~~G~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~L~p   57 (70)
T 2dim_A           10 GVWRNTEDEILKAAVMKYGK----NQWSRIASLLHRKSAKQCKARWYEWLDP   57 (70)
T ss_dssp             CCCCHHHHHHHHHHHHHTCS----SCHHHHHHHSTTCCHHHHHHHHHHTSCS
T ss_pred             CCCCHHHHHHHHHHHHHHCc----CCHHHHHHHhcCCCHHHHHHHHHHHcCC
Confidence            48999999999999999973    4799999999999999987776665544

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.53  E-value=7.6e-05  Score=59.36  Aligned_cols=48  Identities=25%  Similarity=0.378  Sum_probs=41.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.+++..|..     +|.+||..||++|..+|.-|.+-+.+|
T Consensus        79 ~~~WT~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~r~~~~~~~  126 (128)
T 1h8a_C           79 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAVKNHWNSTMRR  126 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS-----CHHHHGGGSTTCCHHHHHHHHHTTTTC
T ss_pred             cccCCHHHHHHHHHHHHHHCc-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999985     699999999999988887777665544

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=97.45  E-value=0.0001  Score=58.82  Aligned_cols=47  Identities=30%  Similarity=0.460  Sum_probs=39.9

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ..||.||..+|.+++..|..     +|.+||..||++|-.+|--|.+.+.+|
T Consensus        63 ~~WT~eEd~~L~~~v~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~l~~k  109 (126)
T 3osg_A           63 TPWTAEEDALLVQKIQEYGR-----QWAIIAKFFPGRTDIHIKNRWVTISNK  109 (126)
T ss_dssp             SCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence            48999999999999999985     599999999999988776666555444

>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A

Probab=97.44  E-value=0.00014  Score=52.54  Aligned_cols=50  Identities=32%  Similarity=0.476  Sum_probs=41.6

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CccHHHHHHHHHhhccc
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN--NKTVRDVALRCRWMTKK  111 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp--~KTvrDVAlR~rwm~~K  111 (252)
                      ....||.||..+|.++..+|..    .+|.+||..||  ++|..++--|.+-+.+.
T Consensus         9 ~r~~WT~eED~~L~~~v~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p   60 (69)
T 1ity_A            9 KRQAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWRTMKKL   60 (69)
T ss_dssp             SCCCCCHHHHHHHHHHHHHHCS----SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHHHHHHCC----CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence            4568999999999999999963    47999999999  99988877766655544

>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A

Probab=97.44  E-value=0.00019  Score=51.83  Aligned_cols=46  Identities=33%  Similarity=0.523  Sum_probs=36.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CccHHHHHHHHHhh
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN--NKTVRDVALRCRWM  108 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp--~KTvrDVAlR~rwm  108 (252)
                      ...||.||..+|.++..+|..    ..|.+||..+|  ++|..|+--|.+=|
T Consensus        11 k~~WT~eED~~L~~~V~~~G~----~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl   58 (64)
T 3sjm_A           11 KQKWTVEESEWVKAGVQKYGE----GNWAAISKNYPFVNRTAVMIKDRWRTM   58 (64)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHccCC----CchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence            357999999999999999964    35999999977  88877754444434

>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}

Probab=97.41  E-value=0.00022  Score=53.08  Aligned_cols=46  Identities=30%  Similarity=0.422  Sum_probs=39.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK  110 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~  110 (252)
                      ...||.||..+|.++..+|...     |.+||..| ++|..+|--|++.+.+
T Consensus        23 k~~wT~EED~~L~~l~~~~G~k-----W~~IA~~l-gRt~~q~knRw~~L~~   68 (73)
T 2llk_A           23 VGKYTPEEIEKLKELRIKHGND-----WATIGAAL-GRSASSVKDRCRLMKD   68 (73)
T ss_dssp             CCSSCHHHHHHHHHHHHHHSSC-----HHHHHHHH-TSCHHHHHHHHHHCSC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC-----HHHHHHHh-CCCHHHHHHHHHHHHH
Confidence            3589999999999999999853     99999999 9998877777665543

>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A

Probab=97.37  E-value=0.00016  Score=55.43  Aligned_cols=46  Identities=28%  Similarity=0.385  Sum_probs=39.5

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      ..||.||..+|.++..+|..    .+|.+||..||++|.+++.-|.+-+.
T Consensus         5 ~~WT~eED~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l   50 (105)
T 1gv2_A            5 GPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHL   50 (105)
T ss_dssp             SCCCHHHHHHHHHHHHHHCT----TCHHHHHTTSTTCCHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHHHhCC----CcHHHHhhhhcCCCHHHHHHHHHhcc
Confidence            47999999999999999975    36999999999999998876655443

>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A

Probab=97.31  E-value=0.00024  Score=55.00  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=38.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM  108 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm  108 (252)
                      ..||.||..+|.++..+|..    .+|.+||..||++|.+++.-|..-+
T Consensus         2 ~~Wt~eED~~L~~~v~~~g~----~~W~~Ia~~~~~Rt~~qcr~Rw~~~   46 (107)
T 2k9n_A            2 VKFTEEEDLKLQQLVMRYGA----KDWIRISQLMITRNPRQCRERWNNY   46 (107)
T ss_dssp             CSSCHHHHHHHHHHHHHHCS----SCHHHHHHHTTTSCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC----CCHHHHhhhcCCCCHHHHHHHHHHH
Confidence            36999999999999999975    4699999999999999987665443

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=97.31  E-value=0.0002  Score=58.71  Aligned_cols=48  Identities=23%  Similarity=0.376  Sum_probs=41.0

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.+++..|..     +|.+||..||++|--+|--|.+-+.+|
T Consensus       110 ~~~WT~eEd~~L~~~~~~~g~-----~W~~Ia~~l~gRt~~~~knr~~~~~r~  157 (159)
T 1h89_C          110 KTSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNSTMRR  157 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS-----CHHHHHTTSTTCCHHHHHHHHHTTTCC
T ss_pred             ccCCChHHHHHHHHHHHHHCC-----CHHHHHHHCCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999985     799999999999987777776665554

>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A

Probab=97.20  E-value=0.00034  Score=55.67  Aligned_cols=46  Identities=22%  Similarity=0.317  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      ...||.||..+|.++..+|..     +|.+||..||++|.+++.-|.+-..
T Consensus        11 k~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~~Rt~~qcr~Rw~~~l   56 (126)
T 3osg_A           11 KQKFTPEEDEMLKRAVAQHGS-----DWKMIAATFPNRNARQCRDRWKNYL   56 (126)
T ss_dssp             SCCCCHHHHHHHHHHHHHHTT-----CHHHHHHTCTTCCHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHHHHHHHhCC-----CHHHHHHHcCCCCHHHHHHHHhhhc
Confidence            457999999999999999964     6999999999999998876665443

>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3

Probab=97.17  E-value=0.00048  Score=54.67  Aligned_cols=48  Identities=27%  Similarity=0.429  Sum_probs=40.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK  110 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~  110 (252)
                      ...||.||..+|.+++.+|...    +|.+||..||++|..++--|..-+..
T Consensus        27 k~~Wt~eED~~L~~~v~~~g~~----~W~~Ia~~l~~Rt~~qcr~Rw~~~l~   74 (128)
T 1h8a_C           27 KGPWTKEEDQRVIEHVQKYGPK----RWSDIAKHLKGRIGKQCRERWHNHLN   74 (128)
T ss_dssp             CSCCCHHHHHHHHHHHHHTCSC----CHHHHHHHSSSCCHHHHHHHHHHTTC
T ss_pred             CCCCCHHHHHHHHHHHHHHCCC----CHHHHHHHhcCCcHHHHHHHHHHhcc
Confidence            3589999999999999999753    69999999999999987766554433

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=96.97  E-value=0.00062  Score=54.42  Aligned_cols=48  Identities=23%  Similarity=0.284  Sum_probs=40.3

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcccc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKE  112 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~Ke  112 (252)
                      ..||.||..+|.++...|..     +|.+||..||++|-.+|--|.+-+.++.
T Consensus        55 ~~Wt~eEd~~L~~~~~~~G~-----~W~~Ia~~l~gRt~~~~k~rw~~~l~~~  102 (131)
T 3zqc_A           55 HAWTPEEDETIFRNYLKLGS-----KWSVIAKLIPGRTDNAIKNRWNSSISKR  102 (131)
T ss_dssp             SCCCHHHHHHHHHHHHHSCS-----CHHHHTTTSTTCCHHHHHHHHHHTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHHCc-----CHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence            58999999999999999985     5999999999999887766655555553

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.95  E-value=0.0011  Score=64.62  Aligned_cols=47  Identities=28%  Similarity=0.395  Sum_probs=42.3

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      +...||.||..+|.++|.+|..+     |.+||..+++||+..|---+.|+.
T Consensus       379 ~~~~WT~eE~~~f~~al~~yGkd-----w~~IA~~VgTKT~~Qvk~fy~~~k  425 (482)
T 2xag_B          379 CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYR  425 (482)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHTTC-----HHHHHHHHSSCCHHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHHHHHHHHCcC-----HHHHHHHhCCCCHHHHHHHHHHHH
Confidence            57899999999999999999987     999999999999999988766543

>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1

Probab=96.84  E-value=0.002  Score=47.09  Aligned_cols=51  Identities=16%  Similarity=0.218  Sum_probs=43.5

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH---HcCCccHHHHHHHHHhhcccch
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV---HLNNKTVRDVALRCRWMTKKEN  113 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa---~Lp~KTvrDVAlR~rwm~~Ke~  113 (252)
                      ..-.||.||...|.++..+|..     .|.+|+.   .++++|-=|+.=|+|-|.++++
T Consensus         7 ~r~~WT~EE~~~L~~gV~k~G~-----~W~~I~~~y~f~~~RT~VdLKdk~r~L~k~~~   60 (62)
T 1x58_A            7 GRKDFTKEEVNYLFHGVKTMGN-----HWNSILWSFPFQKGRRAVDLAHKYHRLISGPS   60 (62)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHCS-----CHHHHHHHSCCCTTCCHHHHHHHHHHHHTCSS
T ss_pred             CCCCCCHHHHHHHHHHHHHHhH-----hHHHHHHhCCCccCcccchHHHHHHHHHhccc
Confidence            4568999999999999999964     5999994   6788998888888888887754

>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3

Probab=96.70  E-value=0.0073  Score=47.38  Aligned_cols=55  Identities=22%  Similarity=0.247  Sum_probs=44.7

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458           52 LKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM  108 (252)
Q Consensus        52 lk~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm  108 (252)
                      +++.......||.||.+++-....+-.  ++..+|..||..|.||+.-+|--|.+-+
T Consensus        26 ~~s~Ge~VvlWTRe~DR~IL~~cQ~~G--~s~~tFa~iA~~L~Nks~nqV~~RFq~L   80 (95)
T 1ug2_A           26 VSSTGEKVVLWTREADRVILTMCQEQG--AQPHTFSVISQQLGNKTPVEVSHRFREL   80 (95)
T ss_dssp             CCCCCCCCSSSCHHHHHHHHHHHHHTT--SCTTTHHHHHHHHSSCCHHHHHHHHHHH
T ss_pred             ecCCCCEEEEeccccCHHHHHHHHhcC--CChhHHHHHHHHHccCCHHHHHHHHHHH
Confidence            556666889999999998766655532  3567888999999999999999999875

>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}

Probab=96.66  E-value=0.00065  Score=54.29  Aligned_cols=46  Identities=13%  Similarity=0.231  Sum_probs=39.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      -.||.||..+|.+++.+|...    .|.+||..||++|.+++.-|++-+.
T Consensus         3 g~Wt~eED~~L~~~v~~~g~~----~W~~Ia~~~~~Rt~~qcr~Rw~~~l   48 (131)
T 3zqc_A            3 GPFTEAEDDLIREYVKENGPQ----NWPRITSFLPNRSPKQCRERWFNHL   48 (131)
T ss_dssp             SSCCHHHHHHHHHHHHHHCSC----CGGGGTTSCTTSCHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHhCcC----CHHHHHHHHCCCCHHHHHHHHhhcc
Confidence            369999999999999999643    6999999999999999877665443

>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A

Probab=96.64  E-value=0.0018  Score=49.20  Aligned_cols=47  Identities=11%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH----cCCccHHHHHHHHHhhccc
Q 025458           61 EWTLEEQAILEDGLQKYASDRTLTRYAKIAVH----LNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        61 ~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~----Lp~KTvrDVAlR~rwm~~K  111 (252)
                      .||.||..+|.++..+|..    -+|.+||..    |+++|-.|+--|.|=|.++
T Consensus         2 ~WT~eEd~~L~~gv~k~G~----g~W~~I~~~~~~~~~~RT~~~lKdrWrnllk~   52 (83)
T 2ckx_A            2 PFSVAEVEALVEAVEHLGT----GRWRDVKMRAFDNADHRTYVDLKDKWKTLVHT   52 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCS----SCHHHHHHHHCTTCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCC----CCcHHHHHhhccccCCCCHHHHHHHHHHHHHh
Confidence            6999999999999999965    479999997    9999977766665555544

>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C

Probab=96.60  E-value=0.0019  Score=52.84  Aligned_cols=49  Identities=27%  Similarity=0.363  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ...||.||..+|.++..+|..    .+|.+||..||++|..++..|.+-+...
T Consensus        58 ~~~Wt~eEd~~L~~~v~~~g~----~~W~~Ia~~l~~Rt~~qcr~Rw~~~l~p  106 (159)
T 1h89_C           58 KGPWTKEEDQRVIKLVQKYGP----KRWSVIAKHLKGRIGKQCRERWHNHLNP  106 (159)
T ss_dssp             CSCCCHHHHHHHHHHHHHHCS----CCHHHHHHTSTTCCHHHHHHHHHHTTCT
T ss_pred             CCCCChHHHHHHHHHHHHhCc----ccHHHHHHHcCCCCHHHHHHHHHHHhCc
Confidence            468999999999999999975    3699999999999998887766544433

>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3

Probab=96.21  E-value=0.0048  Score=48.92  Aligned_cols=52  Identities=13%  Similarity=0.279  Sum_probs=40.3

Q ss_pred             CCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCccHHHHHHHHHhhccc
Q 025458           56 PGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL----NNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        56 ~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L----p~KTvrDVAlR~rwm~~K  111 (252)
                      ......||.||..+|.++..+|..    -+|.+|+..+    +++|-.|+--|.|=|.++
T Consensus        10 rr~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~f~~RT~v~lKdrWrnllk~   65 (105)
T 2aje_A           10 RRIRRPFSVAEVEALVQAVEKLGT----GRWRDVKLCAFEDADHRTYVDLKDKWKTLVHT   65 (105)
T ss_dssp             CCCCCSCCHHHHHHHHHHHHHHCS----SSHHHHHSSSSSSTTCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            345678999999999999999965    4799999976    788866655555545544

>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*

Probab=96.17  E-value=0.00083  Score=65.44  Aligned_cols=41  Identities=20%  Similarity=0.487  Sum_probs=0.0

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHH
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVAL  103 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAl  103 (252)
                      ....||.||.++|+++|..|..+     |.+|+..||+||+.||..
T Consensus       188 ~~d~WT~eE~~lFe~al~~yGKd-----F~~I~~~lp~Ksv~e~V~  228 (482)
T 2xag_B          188 FPDEWTVEDKVLFEQAFSFHGKT-----FHRIQQMLPDKSIASLVK  228 (482)
T ss_dssp             ----------------------------------------------
T ss_pred             cccccCHHHHHHHHHHHHHcCcc-----HHHHHHHcCCCCHHHHHH
Confidence            34589999999999999999998     799999999999999974

>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}

Probab=95.52  E-value=0.011  Score=48.01  Aligned_cols=51  Identities=14%  Similarity=0.309  Sum_probs=39.8

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCccHHHHHHHHHhhccc
Q 025458           57 GISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL----NNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        57 ~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L----p~KTvrDVAlR~rwm~~K  111 (252)
                      .....||.||..+|.++..+|..    -+|.+||..+    +++|-.|+--|.|=|.++
T Consensus        29 r~r~~WT~EEd~~L~~gV~k~G~----g~W~~I~~~~~~~~~~RT~vdlKdRWrnllk~   83 (122)
T 2roh_A           29 RIRRPFTVAEVELLVEAVEHLGT----GRWRDVKFRAFENVHHRTYVDLKDKWKTLVHT   83 (122)
T ss_dssp             CCCCCCCHHHHHHHHHHHHHHSS----SCHHHHHHHHHSSSCCCCHHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHCC----CChHHHHHHhccccCCCCHHHHHHHHHHHHhh
Confidence            35679999999999999999965    4799999985    899876665555445543

>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A

Probab=95.50  E-value=0.013  Score=52.76  Aligned_cols=53  Identities=28%  Similarity=0.315  Sum_probs=43.2

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCccHHHHHHHHHhhcccc
Q 025458           60 SEWTLEEQAILEDGLQKYASDR-TLTRYAKIAVHLNNKTVRDVALRCRWMTKKE  112 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~-~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~Ke  112 (252)
                      ..||.||..+|-+...+|+... .-.-|.+||..||++|.+.|=-|.+..-++.
T Consensus         9 ~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~LpGRT~nsIRnRw~~~L~~~   62 (246)
T 1ign_A            9 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR   62 (246)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHcCCCCHHHHHHHHHHHHhhh
Confidence            4899999999999999997752 2333999999999999998877777655553

>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}

Probab=95.20  E-value=0.033  Score=45.14  Aligned_cols=49  Identities=12%  Similarity=0.295  Sum_probs=39.2

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc----CCccHHHHHHHHHhhcc
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL----NNKTVRDVALRCRWMTK  110 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L----p~KTvrDVAlR~rwm~~  110 (252)
                      ....||.||..+|.++..+|.    .-+|.+||..+    +++|-.|+--|.|=|.+
T Consensus        16 ~r~~WT~EEd~~L~~gV~k~G----~G~W~~Ia~~~~~~f~~RT~v~lKdRWrnllk   68 (121)
T 2juh_A           16 IRRPFSVAEVEALVEAVEHLG----TGRWRDVKMRAFDNADHRTYVDLKDKWKTLVH   68 (121)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHG----GGCHHHHHHHHCSCCSSCCSHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHC----CCCHHHHHHHhccccCCCCHHHHHHHHHHHHh
Confidence            456899999999999999995    45899999995    89986666555554554

>2lr8_A CAsp8-associated protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, apoptosis; NMR {Homo sapiens}

Probab=93.77  E-value=0.0052  Score=45.88  Aligned_cols=54  Identities=22%  Similarity=0.302  Sum_probs=43.9

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458           52 LKHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM  108 (252)
Q Consensus        52 lk~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm  108 (252)
                      +++...+..-||.||.+++-....+-.  ++...|..||..| +||.-+|--|.+.+
T Consensus         7 ~~~~ge~vvlWTReeDR~IL~~cq~~G--~s~~tfa~iA~~L-nks~~QV~~RF~~L   60 (70)
T 2lr8_A            7 IKKKGEIIILWTRNDDRVILLECQKRG--PSSKTFAYLAAKL-DKNPNQVSERFQQL   60 (70)
Confidence            566677889999999998766554333  3558999999999 99999999999875

>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}

Probab=93.48  E-value=0.12  Score=40.19  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=44.8

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHc-----CCccHHHHHHHHHhhcccchhhhhh
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHL-----NNKTVRDVALRCRWMTKKENSKRRK  118 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~L-----p~KTvrDVAlR~rwm~~Ke~~kRRK  118 (252)
                      .+||.||-..|-+...+|+-     ||+.||..+     +++||-||--|+--+.++-...|.+
T Consensus        31 ~~WTkEETd~Lf~L~~~fdl-----RW~vI~DRy~~~~~~~Rt~EdLK~RyY~v~~~l~~~r~~   89 (93)
T 3hm5_A           31 DAWTKAETDHLFDLSRRFDL-----RFVVIHDRYDHQQFKKRSVEDLKERYYHICAKLANVRAV   89 (93)
T ss_dssp             TTBCHHHHHHHHHHHHHTTT-----CHHHHHHHSCTTTSCCCCHHHHHHHHHHHHHHHHHHTC-
T ss_pred             CCCCHHHHHHHHHHHHHhCC-----CeeeehhhhccCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            79999999999999999975     699999999     5899999988877766665444443

>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A

Probab=91.66  E-value=0.13  Score=47.52  Aligned_cols=40  Identities=25%  Similarity=0.367  Sum_probs=36.6

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHH
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVA  102 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVA  102 (252)
                      -.+||..|-..|..|+.+|..+    .|.+||+.+++||+-+|.
T Consensus       110 F~~W~rrdf~~Fi~a~~kyGr~----~~~~IA~ev~~Kt~eEV~  149 (304)
T 1ofc_X          110 FTAWTKRDFNQFIKANEKYGRD----DIDNIAKDVEGKTPEEVI  149 (304)
T ss_dssp             CTTCCHHHHHHHHHHHHHHCTT----CHHHHTTSSTTCCHHHHH
T ss_pred             hcccCHHHHHHHHHHHHHhCHH----HHHHHHHHhcCCCHHHHH
Confidence            4689999999999999999886    488999999999999994

>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11

Probab=88.78  E-value=0.89  Score=33.08  Aligned_cols=52  Identities=13%  Similarity=0.184  Sum_probs=41.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCc-hhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDR-TLTRYAKIAVHLNNKTVRDVALRCRWMTK  110 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~-~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~  110 (252)
                      ....||+|....|.+++..+..|. .+.+-.++ +..++.|...|+.+.+-+.-
T Consensus         6 ~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~-M~v~gLT~~~VkSHLQKYR~   58 (64)
T 1irz_A            6 PRVLWTHELHNKFLAAVDHLGVERAVPKKILDL-MNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHH-HCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHH-cCCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999998663 44454444 34689999999999987653

>1fex_A TRF2-interacting telomeric RAP1 protein; helix turn helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Synthetic} SCOP: a.4.1.3

Probab=88.42  E-value=0.73  Score=32.49  Aligned_cols=49  Identities=10%  Similarity=0.174  Sum_probs=40.5

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCC----chhhHHHHHHH-HcCCccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASD----RTLTRYAKIAV-HLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e----~~v~Ry~KIAa-~Lp~KTvrDVAlR~rwm~  109 (252)
                      -+.+|.||..+|-+-+..|...    ....-|..+|. .+|+-|-.  +.|.||..
T Consensus         2 R~~FT~edD~~L~~~v~~~~~~~~~~~Gn~iwk~la~~~~~~Htwq--SwRdRy~k   55 (59)
T 1fex_A            2 RIAFTDADDVAILTYVKENARSPSSVTGNALWKAMEKSSLTQHSWQ--SLKDRYLK   55 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCCSTTTTTSSHHHHHHHHSCSSSCCSH--HHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhccccCCCccHHHHHHHHHhHCCCCCHH--HHHHHHHH
Confidence            3679999999999999999654    36678999999 79998876  67888865

>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}

Probab=84.27  E-value=0.93  Score=38.00  Aligned_cols=43  Identities=21%  Similarity=0.244  Sum_probs=35.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH--HcCCccHHHHHH
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAV--HLNNKTVRDVAL  103 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa--~Lp~KTvrDVAl  103 (252)
                      ...||..|...|..++.+|..  .-.||-.|++  .|++||..||--
T Consensus         7 ~~~~t~~E~r~fira~~kfG~--~~~r~~~I~~da~L~~Ks~~~v~~   51 (211)
T 4b4c_A            7 IKGFSDAEIRRFIKSYKKFGG--PLERLDAIARDAELVDKSETDLRR   51 (211)
T ss_dssp             -CCSCHHHHHHHHHHHTTCSS--GGGCHHHHHHHTTCTTSCHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHCC--chhHHHHHHHHhccCCCCHHHHHH
Confidence            468999999999999999974  2358888885  599999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d2cqqa1	59	a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1	1e-06
d2iw5b1	65	a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Hu	9e-06
d2cjja1	63	a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Anti	1e-05
d2cu7a1	65	a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sap	1e-04
d1xc5a1	68	a.4.1.3 (A:413-480) Nuclear receptor corepressor 2	2e-04
d2crga1	57	a.4.1.3 (A:8-64) Metastasis associated protein MTA	3e-04
d2cqra1	60	a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1	0.001

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)

Query: 59  SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108
           + EWT E+ + L   + K+    T  R+ KIA  L  ++V DV  + + +
Sbjct: 1   APEWTEEDLSQLTRSMVKFPGG-TPGRWEKIAHEL-GRSVTDVTTKAKQL 48

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 9e-06
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 58  ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRR 117
            ++ WT EEQ +    ++KY  D     +  I+  + NK+V  V        ++ N    
Sbjct: 4   CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRRFNIDEV 58

Query: 118 KEE 120
            +E
Sbjct: 59  LQE 61

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]} Length = 63

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

 Score = 40.3 bits (94), Expect = 1e-05
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 60  SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKR 116
             W+ +E    E  L  Y  D T  R+A +A  +  +T  +V  +  +    E+ K 
Sbjct: 2   RPWSAKENKAFERALAVYDKD-TPDRWANVARAVEGRTPEEV--KKHYEILVEDIKY 55

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 1e-04
 Identities = 17/71 (23%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 59  SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSKRRK 118
           S +WT+EE+ + E GL K+        + KI+  + ++TV  V  +           + K
Sbjct: 2   SVKWTIEEKELFEQGLAKFGRR-----WTKISKLIGSRTVLQV--KSYARQYF--KNKVK 52

Query: 119 EELSRKSKDKK 129
             L +++ ++K
Sbjct: 53  CGLDKETPNQK 63

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 68

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (85), Expect = 2e-04
 Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 62  WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKKENSK 115
           W+ +E+    +   ++  +     +  IA  L  KTV +  L      K EN K
Sbjct: 20  WSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYYYLTKKNENYK 68

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (83), Expect = 3e-04
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 7/59 (11%)

Query: 61  EWTLEEQAILEDGLQKYASDRTLTRYAKIAVH-LNNKTVRDVALRCRWMTKKENSKRRK 118
           EW+  E  + E+ L+KY  D     +  I    L  K++  +     +M K  +   ++
Sbjct: 3   EWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSII-EYYYMWKTTDRYVQQ 55

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.001
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 1/47 (2%)

Query: 62  WTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM 108
           WT  +Q +LE  LQ+Y    +   + KIA  + +K+  D   R + +
Sbjct: 15  WTQNQQKLLELALQQYPRGSS-DCWDKIARCVPSKSKEDCIARYKLL 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d2cqqa1	59	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.26
d2cqra1	60	DnaJ homolog subfamily C member 1 {Human (Homo sap	99.02
d2cjja1	63	Radialis {Garden snapdragon (Antirrhinum majus) [T	98.83
d2iw5b1	65	REST corepressor 1, CoREST {Human (Homo sapiens) [	98.41
d2crga1	57	Metastasis associated protein MTA3 {Mouse (Mus mus	98.39
d2cu7a1	65	MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 960	98.29
d1xc5a1	68	Nuclear receptor corepressor 2 {Human (Homo sapien	98.08
d1x41a1	47	Transcriptional adaptor 2-like, TADA2L, isoform b	98.06
d1gvda_	52	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.76
d1gv2a2	47	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.76
d1guua_	50	c-Myb, DNA-binding domain {Mouse (Mus musculus) [T	97.71
d1ug2a_	95	2610100b20rik gene product {Mouse (Mus musculus) [	97.55
d1igna1	86	DNA-binding domain of rap1 {Baker's yeast (Sacchar	97.33
d1w0ta_	52	DNA-binding domain of human telomeric protein, hTR	97.18
d1w0ua_	55	Telomeric repeat binding factor 2, TRF2 {Human (Ho	97.13
d2ckxa1	83	Telomere binding protein TBP1 {Tobacco (Nicotiana	96.21
d1irza_	64	Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId	95.57
d1ofcx1	52	SANT domain of the nucleosome remodeling ATPase IS	92.37
d1wgxa_	73	Hypothetical protein C14orf106 (KIAA1903) {Human (	90.62

>d2cqqa1 a.4.1.3 (A:8-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.7e-12  Score=91.37  Aligned_cols=49  Identities=31%  Similarity=0.535  Sum_probs=46.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      +.+||.|||+.||.+|.+||.+ .+.||.+||..| +||+.||..|++-|.
T Consensus         1 a~eWT~ee~~~le~Al~~~P~g-t~~RW~~IA~~v-gkt~~ev~~~~k~l~   49 (59)
T d2cqqa1           1 APEWTEEDLSQLTRSMVKFPGG-TPGRWEKIAHEL-GRSVTDVTTKAKQLK   49 (59)
T ss_dssp             CCCCCHHHHHHHHHHHHHSCTT-CTTHHHHHHHHH-TSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHCCCC-CcHHHHHHHHHH-CCCHHHHHHHHHHHH
Confidence            5799999999999999999998 889999999999 899999999998775

>d2cqra1 a.4.1.3 (A:7-66) DnaJ homolog subfamily C member 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: DnaJ homolog subfamily C member 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.4e-10  Score=79.90  Aligned_cols=50  Identities=28%  Similarity=0.444  Sum_probs=46.1

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhh
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWM  108 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm  108 (252)
                      ....||.||+.+|.+++..|+.+ ...||.+||..||+||..+|..|+++|
T Consensus        11 ~~~~WT~eEd~~L~~~v~~~~~~-~~~~W~~IA~~l~~Rt~~qc~~R~~~L   60 (60)
T d2cqra1          11 AEEPWTQNQQKLLELALQQYPRG-SSDCWDKIARCVPSKSKEDCIARYKLL   60 (60)
T ss_dssp             SSCCCCHHHHHHHHHHHHHSCSS-SHHHHHHHGGGCSSSCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCc-cchHHHHHHHHcCCCCHHHHHHHHHHC
Confidence            34689999999999999999987 688999999999999999999999875

>d2cjja1 a.4.1.3 (A:8-70) Radialis {Garden snapdragon (Antirrhinum majus) [TaxId: 4151]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Radialis
species: Garden snapdragon (Antirrhinum majus) [TaxId: 4151]

Probab=98.83  E-value=2.5e-09  Score=75.29  Aligned_cols=49  Identities=24%  Similarity=0.445  Sum_probs=44.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      ..||.||+++|++++..|+.+ +..||.+||..||+||+.+|.-|++.+.
T Consensus         2 ~~WT~eEd~~L~~~v~~~~~~-~~~~W~~Ia~~l~gRt~~qc~~r~~~L~   50 (63)
T d2cjja1           2 RPWSAKENKAFERALAVYDKD-TPDRWANVARAVEGRTPEEVKKHYEILV   50 (63)
T ss_dssp             CSCCHHHHHHHHHHHHHSCTT-CTTHHHHHHHHSTTCCHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCCC-CchHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            479999999999999999987 7789999999999999999998887654

>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: REST corepressor 1, CoREST
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=2.4e-07  Score=64.92  Aligned_cols=49  Identities=27%  Similarity=0.415  Sum_probs=43.4

Q ss_pred             CCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhccc
Q 025458           58 ISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTKK  111 (252)
Q Consensus        58 ~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~K  111 (252)
                      ....||.||..+|.++|.+|..+     |.+||..||+||+.||-.|+....++
T Consensus         4 ~~~~WT~eE~~~f~~~~~~~G~~-----w~~Ia~~~~~kt~~q~~~~y~~~~k~   52 (65)
T d2iw5b1           4 CNARWTTEEQLLAVQAIRKYGRD-----FQAISDVIGNKSVVQVKNFFVNYRRR   52 (65)
T ss_dssp             CCSSCCHHHHHHHHHHHHHHSSC-----HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred             CCCCCCHHHHHHHHHHHHHhCch-----HHHHHHHcCCCCHHHHHHHHHHHHhh
Confidence            45789999999999999999965     99999999999999999998765443

>d2crga1 a.4.1.3 (A:8-64) Metastasis associated protein MTA3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Metastasis associated protein MTA3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.39  E-value=1.9e-07  Score=64.78  Aligned_cols=49  Identities=22%  Similarity=0.451  Sum_probs=41.5

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHH-HcCCccHHHHHHHHHhhcccch
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAV-HLNNKTVRDVALRCRWMTKKEN  113 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa-~Lp~KTvrDVAlR~rwm~~Ke~  113 (252)
                      .+||.||..+|++||..|..+     |.+||. ++|+||+.||..-+=...+.+.
T Consensus         2 d~WT~eE~~~F~~~~~~yGKd-----f~~I~~~~v~~Ks~~~~v~fYY~~Kkt~~   51 (57)
T d2crga1           2 EEWSASEACLFEEALEKYGKD-----FNDIRQDFLPWKSLTSIIEYYYMWKTTDR   51 (57)
T ss_dssp             CCCCHHHHHHHHHHHHHTCSC-----HHHHHHTTCSSSCHHHHHHHHHHHHTCCS
T ss_pred             CCCCHHHHHHHHHHHHHHccc-----HHHHHHHHcCCCCHHHHHHHHHHHhCCch
Confidence            479999999999999999998     899997 6899999999987654444443

>d2cu7a1 a.4.1.3 (A:8-72) MYSM1 (KIAA1915) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: MYSM1 (KIAA1915)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=5.3e-07  Score=62.84  Aligned_cols=46  Identities=35%  Similarity=0.606  Sum_probs=40.9

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      ++.||.||..+|.+++..|..     .|.+||..||+||..+|-.|+.-+.
T Consensus         2 ~~~WT~eEd~~l~~~~~~~G~-----~W~~Ia~~~~~Rt~~q~k~ry~~~~   47 (65)
T d2cu7a1           2 SVKWTIEEKELFEQGLAKFGR-----RWTKISKLIGSRTVLQVKSYARQYF   47 (65)
T ss_dssp             CCCCCHHHHHHHHHHHHHTCS-----CHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhcc-----hHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            578999999999999999985     4999999999999999988886443

>d1xc5a1 a.4.1.3 (A:413-480) Nuclear receptor corepressor 2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Nuclear receptor corepressor 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=8.8e-07  Score=62.57  Aligned_cols=45  Identities=20%  Similarity=0.378  Sum_probs=40.6

Q ss_pred             CCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458           57 GISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR  106 (252)
Q Consensus        57 ~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r  106 (252)
                      .....||.||..+|.+++..|..+     |.+||..||+||+.+|..|..
T Consensus        15 ~~~~~WT~eE~~~f~~~~~~~G~~-----w~~Ia~~~~~rt~~q~~~~yy   59 (68)
T d1xc5a1          15 QVMNMWSEQEKETFREKFMQHPKN-----FGLIASFLERKTVAECVLYYY   59 (68)
T ss_dssp             TTTTCCCTTTHHHHHHHHHHTTSC-----SSSHHHHTTTSCHHHHHHHHH
T ss_pred             cCCCCCCHHHHHHHHHHHHHHCCc-----HHHHHHHcCCCCHHHHHHHHH
Confidence            345689999999999999999875     999999999999999999864

>d1x41a1 a.4.1.1 (A:8-54) Transcriptional adaptor 2-like, TADA2L, isoform b {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Homeodomain
domain: Transcriptional adaptor 2-like, TADA2L, isoform b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.9e-06  Score=57.27  Aligned_cols=43  Identities=16%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR  106 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r  106 (252)
                      .+||.||..+|.+++.+|..    ..|.+||..||+||.+++-.|..
T Consensus         2 ~~Wt~eEd~~L~~~v~~~G~----~nW~~Ia~~~~~Rt~~Qcr~r~~   44 (47)
T d1x41a1           2 PSWTAQEEMALLEAVMDCGF----GNWQDVANQMCTKTKEECEKHYM   44 (47)
T ss_dssp             SSSCHHHHHHHHHHHHHTCT----TCHHHHHHHHTTSCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHCC----ccHHHHHHHcCCCCHHHHHHHHH
Confidence            36999999999999999953    36999999999999999887764

>d1gvda_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=1.1e-05  Score=54.61  Aligned_cols=43  Identities=33%  Similarity=0.479  Sum_probs=37.8

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR  106 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r  106 (252)
                      ..||.||..+|.++..+|...    +|..||..||++|..++--|.+
T Consensus         4 g~WT~eED~~L~~~v~~~g~~----~W~~Ia~~l~~Rt~~qc~~Rw~   46 (52)
T d1gvda_           4 GPWTKEEDQRLIKLVQKYGPK----RWSVIAKHLKGRIGKQCRERWH   46 (52)
T ss_dssp             CSCCHHHHHHHHHHHHHHCTT----CHHHHHTTSTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHCCCCHHHHHHHHH
Confidence            479999999999999999643    5999999999999998877765

>d1gv2a2 a.4.1.3 (A:144-190) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.76  E-value=2.2e-05  Score=52.08  Aligned_cols=43  Identities=26%  Similarity=0.386  Sum_probs=38.1

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHh
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRW  107 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rw  107 (252)
                      ..||.||..+|-+...+|..     +|.+||..||++|..+|-.|+.-
T Consensus         2 ~~WT~eED~~L~~~v~~~G~-----~W~~Ia~~~~gRt~~~~knr~~~   44 (47)
T d1gv2a2           2 TSWTEEEDRIIYQAHKRLGN-----RWAEIAKLLPGRTDNAIKNHWNS   44 (47)
T ss_dssp             CCCCHHHHHHHHHHHHHHSS-----CHHHHHTTCTTCCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhh-----HHHHHHhHcCCCCHHHHHHHHHH
Confidence            57999999999999999984     69999999999998888777654

>d1guua_ a.4.1.3 (A:) c-Myb, DNA-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: c-Myb, DNA-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=3e-05  Score=51.69  Aligned_cols=43  Identities=28%  Similarity=0.380  Sum_probs=37.5

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHH
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCR  106 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~r  106 (252)
                      ..||.||..+|.++..+|...    .|.+||..||++|..++--|.+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~----~W~~Ia~~~~~Rt~~qcr~Rw~   44 (50)
T d1guua_           2 TRWTREEDEKLKKLVEQNGTD----DWKVIANYLPNRTDVQCQHRWQ   44 (50)
T ss_dssp             CCCCHHHHHHHHHHHHHHCSS----CHHHHHHTSTTCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCCC----CHHHHHHHHCCCCHHHHHHHHH
Confidence            479999999999999999643    4999999999999988776654

>d1ug2a_ a.4.1.3 (A:) 2610100b20rik gene product {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: 2610100b20rik gene product
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.55  E-value=0.00017  Score=54.81  Aligned_cols=55  Identities=22%  Similarity=0.243  Sum_probs=45.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhc
Q 025458           53 KHNPGISSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMT  109 (252)
Q Consensus        53 k~~~~~~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~  109 (252)
                      +....+...||.||.++|-+...++..  ...-|.+||+.|++||.-+|--|++.+-
T Consensus        27 ~s~G~~~~~WTrEEDriIL~~~q~~G~--~~~tw~~Ia~~L~~Rs~~qvr~Rf~~Lm   81 (95)
T d1ug2a_          27 SSTGEKVVLWTREADRVILTMCQEQGA--QPHTFSVISQQLGNKTPVEVSHRFRELM   81 (95)
T ss_dssp             CCCCCCCSSSCHHHHHHHHHHHHHTTS--CTTTHHHHHHHHSSCCHHHHHHHHHHHH
T ss_pred             CCCCCccCCcCHHHHHHHHHHHHHcCC--cHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            334447889999999999999998873  3556899999999999999999988754

>d1igna1 a.4.1.6 (A:360-445) DNA-binding domain of rap1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of rap1
domain: DNA-binding domain of rap1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.33  E-value=9.9e-05  Score=54.65  Aligned_cols=53  Identities=26%  Similarity=0.284  Sum_probs=43.6

Q ss_pred             CCCCHHHHHHHHHHHhhhcCC-chhhHHHHHHHHcCCccHHHHHHHHHhhcccc
Q 025458           60 SEWTLEEQAILEDGLQKYASD-RTLTRYAKIAVHLNNKTVRDVALRCRWMTKKE  112 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e-~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~Ke  112 (252)
                      ..||.||.++|.+...+|... .....|.+||..||++|.+++--|.+=.-..+
T Consensus         2 ~~WT~eED~~L~~~v~~~g~~~~~~~~W~~IA~~lpgRt~~qcr~Rw~~~L~p~   55 (86)
T d1igna1           2 ASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYVPNHTGNSIRHRFRVYLSKR   55 (86)
T ss_dssp             CCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTSTTSCHHHHHHHHHHTTGGG
T ss_pred             CCCCHHHHHHHHHHHHHhCcCcCCccCHHHHHHHcCCCCHHHHHHHHHHHcCcc
Confidence            479999999999999999764 46678999999999999888766665444443

>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: DNA-binding domain of human telomeric protein, hTRF1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.18  E-value=0.00025  Score=47.55  Aligned_cols=43  Identities=33%  Similarity=0.556  Sum_probs=34.3

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcC--CccHHHHHHHHH
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLN--NKTVRDVALRCR  106 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp--~KTvrDVAlR~r  106 (252)
                      ..||.||...|-+++.+|..    ..|.+||..+|  ++|-.|+.-|.+
T Consensus         3 ~~WT~eED~~L~~~v~~~G~----~~W~~I~~~~~~~~Rt~~q~r~Rw~   47 (52)
T d1w0ta_           3 QAWLWEEDKNLRSGVRKYGE----GNWSKILLHYKFNNRTSVMLKDRWR   47 (52)
T ss_dssp             CCCCHHHHHHHHHHHHHHCT----TCHHHHHHHSCCSSCCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHCC----CCHHHHHhhcCCCCCCHHHHHHHHH
Confidence            47999999999999999954    36999999876  777666555444

>d1w0ua_ a.4.1.4 (A:) Telomeric repeat binding factor 2, TRF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: DNA-binding domain of telomeric protein
domain: Telomeric repeat binding factor 2, TRF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00028  Score=47.72  Aligned_cols=47  Identities=32%  Similarity=0.515  Sum_probs=37.7

Q ss_pred             CCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH--cCCccHHHHHHHHHhhcc
Q 025458           60 SEWTLEEQAILEDGLQKYASDRTLTRYAKIAVH--LNNKTVRDVALRCRWMTK  110 (252)
Q Consensus        60 ~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~--Lp~KTvrDVAlR~rwm~~  110 (252)
                      ..||.||...|.++..+|.    +..|.+||..  ++++|..|+.-|.+=|.+
T Consensus         3 ~~WT~eEd~~L~~~V~~~G----~~~W~~I~~~~~~~~Rt~~q~k~Rwrn~~k   51 (55)
T d1w0ua_           3 QKWTVEESEWVKAGVQKYG----EGNWAAISKNYPFVNRTAVMIKDRWRTMKR   51 (55)
T ss_dssp             CCCCHHHHHHHHHHHHHHC----TTCHHHHHHHSCCSSCCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhC----CChHHHHHhhcCCCCcCHHHHHHHHHHHhc
Confidence            4799999999999999995    3359999998  569997776666655544

>d2ckxa1 a.4.1.3 (A:578-660) Telomere binding protein TBP1 {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Telomere binding protein TBP1
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=96.21  E-value=0.0024  Score=46.22  Aligned_cols=45  Identities=11%  Similarity=0.319  Sum_probs=36.7

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHH----cCCccHHHHHHHHHhhc
Q 025458           61 EWTLEEQAILEDGLQKYASDRTLTRYAKIAVH----LNNKTVRDVALRCRWMT  109 (252)
Q Consensus        61 ~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~----Lp~KTvrDVAlR~rwm~  109 (252)
                      .||.||..+|.++..+|...    +|.+||..    ++++|..|+--|.+=|.
T Consensus         2 ~WT~eEd~~L~~~V~~~G~~----~W~~I~~~~~~~~~~Rt~~qck~RWrn~l   50 (83)
T d2ckxa1           2 PFSVAEVEALVEAVEHLGTG----RWRDVKMRAFDNADHRTYVDLKDKWKTLV   50 (83)
T ss_dssp             CCCHHHHHHHHHHHHHHCSS----CHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHCcc----cHHHHHHHHHhhccCCCHHHHHHHHHHHh
Confidence            59999999999999999643    69999875    78998877766665554

>d1irza_ a.4.1.11 (A:) Arr10-B {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: GARP response regulators
domain: Arr10-B
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.57  E-value=0.0099  Score=41.65  Aligned_cols=52  Identities=13%  Similarity=0.158  Sum_probs=39.4

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHHHHHHhhcc
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVALRCRWMTK  110 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVAlR~rwm~~  110 (252)
                      ...||+||...|.+|+..|..+...-+=|.-.+..|+.|...|+.+.+-+.-
T Consensus         7 R~~WT~elH~~Fv~Av~~lG~~~atpk~I~~~m~v~~lT~~qV~SHlQKYrl   58 (64)
T d1irza_           7 RVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRV   58 (64)
T ss_dssp             SCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHhCccccchHHHHHHcCCCCCCHHHHHHHHHHHHH
Confidence            4679999999999999999887311111222345899999999999988753

>d1ofcx1 a.4.1.3 (X:799-850) SANT domain of the nucleosome remodeling ATPase ISWI {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: SANT domain of the nucleosome remodeling ATPase ISWI
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.37  E-value=0.047  Score=36.81  Aligned_cols=38  Identities=26%  Similarity=0.398  Sum_probs=34.8

Q ss_pred             CCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHHH
Q 025458           61 EWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDVA  102 (252)
Q Consensus        61 ~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDVA  102 (252)
                      .|+..|-..|-.|+.+|..+    -|-+||..+.+||..+|.
T Consensus         1 ~WnrrdF~~Fi~a~ekyGR~----d~~~Ia~e~~~Kt~eEV~   38 (52)
T d1ofcx1           1 AWTKRDFNQFIKANEKYGRD----DIDNIAKDVEGKTPEEVI   38 (52)
T ss_dssp             TCCHHHHHHHHHHHHHHCTT----CHHHHTTSSTTCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHh----hHHHHHHHhcCCCHHHHH
Confidence            49999999999999999986    368999999999999986

>d1wgxa_ a.4.1.3 (A:) Hypothetical protein C14orf106 (KIAA1903) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: Homeodomain-like
family: Myb/SANT domain
domain: Hypothetical protein C14orf106 (KIAA1903)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.62  E-value=0.27  Score=35.05  Aligned_cols=42  Identities=12%  Similarity=0.277  Sum_probs=37.3

Q ss_pred             CCCCCHHHHHHHHHHHhhhcCCchhhHHHHHHHHcCCccHHHH
Q 025458           59 SSEWTLEEQAILEDGLQKYASDRTLTRYAKIAVHLNNKTVRDV  101 (252)
Q Consensus        59 ~~~WT~eEq~iLe~~L~~y~~e~~v~Ry~KIAa~Lp~KTvrDV  101 (252)
                      ..+|+.+|...|+++|+.+|.. ..-=|.+||+.+..+|..+-
T Consensus         8 d~~W~e~ELqkLh~A~~SlPkh-~~gfW~~VA~~VGtRSaeEC   49 (73)
T d1wgxa_           8 DKEWNEKELQKLHCAFASLPKH-KPGFWSEVAAAVGSRSPEEC   49 (73)
T ss_dssp             SSCCCHHHHHHHHHHHHHSCSS-SSSHHHHHHHHTTTSCHHHH
T ss_pred             ccccCHHHHHHHHHHHHhcCCC-CCccHHHHHHHHccCCHHHH
Confidence            5689999999999999999998 66679999999999987763