Citrus Sinensis ID: 025461

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILRPRHII
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccEEEEccccccccccEEEEccccEEEEEEEEEEEcEEEEccEEEEEEEEccEEEEccEEccccccccccccEEEccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHccccccccccccccccHHHHHHcccccHHHHHHHHHHcccccccccccccccEEEEEEEEEEccccccEEEEcccccccHHcEEEEEcccEEEEEEEEEEccccEEEEEEEEEEEEccEEEEEEEEEEEEEccccccEEEEcccEEccccccccEEEEEEEEccccccEEEEEEEEEEHHHHHcccccc
Coil and Loop (DISEMBL)
mslavgvdsssknmglddkdksnksevsgetmpktppneenvdeqsggmsrqmsensisvtedeeddedrkielgpqytlkeqfekdkddESLRRWKEQLLGsvdfesvgeslEPEVKILSLAiktpsrpdivlsvpengrpkgswftlkegsrysLQFSFQVRNNIVSGLKYTNTVWktglkvdstkmmlgtfspqaepytqelpedttpsgffargsysakskVSSACSafcslcfpvtiliilrprhii
Flexible Loop (DISEMBL)
mslavgvdsssknmglddkdksnksevsgetmpktppneenvdeqsggmsrqmsensisvtedeeddedrkielgpqytlkeqfekdkddeslRRWKEQLlgsvdfesvgeslEPEVKILSlaiktpsrpdivlsvpengrpkgSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILRPRHII
Low Complexity Region (SEG)
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTedeeddedRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGsysakskvssacsafcslcfPVTILIILRPRHII
Disordered region (IsUnstruct)
***************************************************************************************************LLGSVDF*********EVKILSLAIKT****DIVLSV******KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG*********************************VSSACSAFCSLCFPVTILIILRP****
Disordered Region (DISOPRED)
*******************************************************************************LKEQFEKDKDDESLRRWKEQLLGSVDF*SVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILRPRHII
Disordered Region (DISEMBL)
*********************************************************************RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGS**********CSAFCSLCFPVTILIILRPRHII
Disordered Region (DISPRO)
*SL****D**************************************************************KIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILRPRHII
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILRPRHII
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q9SFC6	240	Rho GDP-dissociation inhi	yes	no	0.702	0.737	0.724	3e-73
Q4R4J0	204	Rho GDP-dissociation inhi	N/A	no	0.654	0.808	0.380	5e-22
P52565	204	Rho GDP-dissociation inhi	yes	no	0.654	0.808	0.380	5e-22
Q61599	200	Rho GDP-dissociation inhi	yes	no	0.638	0.805	0.383	1e-21
P19803	204	Rho GDP-dissociation inhi	yes	no	0.662	0.818	0.378	2e-21
Q5XI73	204	Rho GDP-dissociation inhi	yes	no	0.662	0.818	0.378	2e-21
Q99PT1	204	Rho GDP-dissociation inhi	no	no	0.662	0.818	0.378	2e-21
Q9TU03	200	Rho GDP-dissociation inhi	no	no	0.674	0.85	0.384	3e-21
P52566	201	Rho GDP-dissociation inhi	no	no	0.583	0.731	0.397	1e-19
Q95UQ1	197	Putative rho GDP-dissocia	yes	no	0.583	0.746	0.354	3e-19

>sp|Q9SFC6|GDIR_ARATH Rho GDP-dissociation inhibitor 1 OS=Arabidopsis thaliana GN=GDI1 PE=1 SV=1

 Score =  275 bits (702), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 129/178 (72%), Positives = 153/178 (85%), Gaps = 1/178 (0%)

Query: 48  GMSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFE 107
            +SRQMSE+S+  TE+EEDD D K++LGPQYT+KE  EKDKDDESLR+WKEQLLGSVD  
Sbjct: 39  ALSRQMSESSLCATEEEEDD-DSKLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVT 97

Query: 108 SVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNI 167
           ++GE+L+PEV+I SLAI +P RPDIVL VPENG PKG WFTLKEGS+Y+L+F+F V NNI
Sbjct: 98  NIGETLDPEVRIDSLAIISPGRPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNI 157

Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           VSGL+YTNTVWKTG+KVD  K MLGTFSPQ EPY   +PE+TTPSG FARGSYSA++K
Sbjct: 158 VSGLRYTNTVWKTGVKVDRAKEMLGTFSPQLEPYNHVMPEETTPSGMFARGSYSARTK 215

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4R4J0|GDIR1_MACFA Rho GDP-dissociation inhibitor 1 OS=Macaca fascicularis GN=ARHGDIA PE=2 SV=1

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 95/171 (55%), Gaps = 6/171 (3%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +  +   P V +
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72

Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
             L +   S P   ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY   
Sbjct: 73  TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131

Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS 227
            ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGSYS KS+ +
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFT 182

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Macaca fascicularis (taxid: 9541)

>sp|P52565|GDIR1_HUMAN Rho GDP-dissociation inhibitor 1 OS=Homo sapiens GN=ARHGDIA PE=1 SV=3

 Score =  104 bits (260), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 65/171 (38%), Positives = 95/171 (55%), Gaps = 6/171 (3%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +  +   P V +
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVV 72

Query: 120 LSLAIKTPSRP---DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNT 176
             L +   S P   ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY   
Sbjct: 73  TGLTLVCSSAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQH 131

Query: 177 VWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS 227
            ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGSYS KS+ +
Sbjct: 132 TYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIKSRFT 182

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q61599|GDIR2_MOUSE Rho GDP-dissociation inhibitor 2 OS=Mus musculus GN=Arhgdib PE=1 SV=3

 Score =  103 bits (256), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/167 (38%), Positives = 93/167 (55%), Gaps = 6/167 (3%)

Query: 62  EDEEDDEDRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
           E+ +DD D K+   P  Q +LKE  E DKDDESL ++K+ LLG  D   V +   P V +
Sbjct: 11  EEADDDLDSKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DVPVVADPTVPNVTV 68

Query: 120 LSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
             L++   S P  I + +  +    K   F LKEG  Y ++ +F+V  +IVSGLKY    
Sbjct: 69  TRLSLVCDSAPGPITMDLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHT 128

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKS 224
           ++TG++VD    M+G++ P+ E Y    P +  P G  ARG+Y  KS
Sbjct: 129 YRTGMRVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKS 175

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|P19803|GDIR1_BOVIN Rho GDP-dissociation inhibitor 1 OS=Bos taurus GN=ARHGDIA PE=1 SV=3

 Score =  103 bits (256), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 2/169 (1%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTR 74

Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           L+L   T   P ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS 227
           + G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ KS+ +
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFT 182

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|Q5XI73|GDIR1_RAT Rho GDP-dissociation inhibitor 1 OS=Rattus norvegicus GN=Arhgdia PE=1 SV=1

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 2/169 (1%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74

Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           L+L   T   P ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS 227
           + G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ KS+ +
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFT 182

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Rattus norvegicus (taxid: 10116)

>sp|Q99PT1|GDIR1_MOUSE Rho GDP-dissociation inhibitor 1 OS=Mus musculus GN=Arhgdia PE=1 SV=3

 Score =  102 bits (255), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 64/169 (37%), Positives = 93/169 (55%), Gaps = 2/169 (1%)

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
             E+EED+     +   Q +++E  E DKDDESLR++KE LLG V   +        V  
Sbjct: 15  AAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVIVTR 74

Query: 120 LSLAIKTPSRP-DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           L+L   T   P ++ L+       K S F LKEG  Y ++ SF+V   IVSG+KY    +
Sbjct: 75  LTLVCSTAPGPLELDLTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTY 133

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS 227
           + G+K+D T  M+G++ P+AE Y    P +  P G  ARGSY+ KS+ +
Sbjct: 134 RKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGSYNIKSRFT 182

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Mus musculus (taxid: 10090)

>sp|Q9TU03|GDIR2_BOVIN Rho GDP-dissociation inhibitor 2 OS=Bos taurus GN=ARHGDIB PE=2 SV=3

 Score =  102 bits (254), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 68/177 (38%), Positives = 97/177 (54%), Gaps = 7/177 (3%)

Query: 53  MSENSISVTEDEEDDE-DRKIELGP--QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESV 109
           M+E +     +E+DDE D K+   P  Q +LKE  E DKDDESL ++K+ LLG  D   V
Sbjct: 1   MTEKAPEPHVEEDDDELDGKLNYKPPPQKSLKELQEMDKDDESLTKYKKTLLG--DGPVV 58

Query: 110 GESLEPEVKILSLAIKTPSRPD-IVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNI 167
            +   P V +  L +   S P  I + +  +    K   F LKEG  Y ++ +F+V  +I
Sbjct: 59  ADPTAPNVTVTRLTLVCESAPGPITMDLTGDLEALKKETFVLKEGVEYRVKINFKVNKDI 118

Query: 168 VSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKS 224
           VSGLKY    ++TG+KVD    M+G++ P+ E Y    P +  P G  ARG+Y  KS
Sbjct: 119 VSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPIEEAPKGMLARGTYHNKS 175

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Bos taurus (taxid: 9913)

>sp|P52566|GDIR2_HUMAN Rho GDP-dissociation inhibitor 2 OS=Homo sapiens GN=ARHGDIB PE=1 SV=3

 Score = 97.1 bits (240), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 60/151 (39%), Positives = 83/151 (54%), Gaps = 4/151 (2%)

Query: 76  PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
           PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct: 28  PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 85

Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
            +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct: 86  DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 145

Query: 194 FSPQAEPYTQELPEDTTPSGFFARGSYSAKS 224
           + P+ E Y    P +  P G  ARG+Y  KS
Sbjct: 146 YGPRPEEYEFLTPVEEAPKGMLARGTYHNKS 176

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them.

Homo sapiens (taxid: 9606)

>sp|Q95UQ1|GDIR1_DICDI Putative rho GDP-dissociation inhibitor 1 OS=Dictyostelium discoideum GN=rdiA PE=1 SV=1

 Score = 95.9 bits (237), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 55/155 (35%), Positives = 89/155 (57%), Gaps = 8/155 (5%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL 134
           G   ++ +  ++D +DE+L+R+KE LLG+       +  +  +K + + I+   RPD + 
Sbjct: 17  GKHVSVDQLKQQDAEDEALKRYKESLLGTGVHAPKDDPRKLVIKEMKIQIE--GRPDTIY 74

Query: 135 SVPEN---GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML 191
            +         K   F LKE   Y +  +F ++++IVSGLK TNTV++ G+KV + K ML
Sbjct: 75  PLDTKELIKEMKTKPFVLKESCHYKITLTFNIQHDIVSGLKQTNTVYRKGIKVSTEKHML 134

Query: 192 GTFSPQAEPYTQELPE---DTTPSGFFARGSYSAK 223
           G+F+PQA  ++   P    +  PSG  ARGSY+AK
Sbjct: 135 GSFAPQALAHSVTNPRHGWEEAPSGMLARGSYTAK 169

Regulates the GDP/GTP exchange reaction of the Rho proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP to them (By similarity). Regulates the Rac-dependent signaling pathways controlling cytokinesis, actin reorganization and the contractile vacuole. Required for efficient accumulation of cap at the cell cortex.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
224137328	257	predicted protein [Populus trichocarpa]	0.884	0.867	0.728	5e-87
224089617	243	predicted protein [Populus trichocarpa]	0.833	0.864	0.752	1e-85
356520100	249	PREDICTED: rho GDP-dissociation inhibito	0.884	0.895	0.697	2e-83
449443560	259	PREDICTED: rho GDP-dissociation inhibito	0.880	0.857	0.696	3e-82
356564466	249	PREDICTED: rho GDP-dissociation inhibito	0.892	0.903	0.690	2e-81
388508888	242	unknown [Lotus japonicus]	0.869	0.904	0.688	2e-81
255583030	246	Rho GDP-dissociation inhibitor, putative	0.865	0.886	0.706	3e-81
449453577	240	PREDICTED: rho GDP-dissociation inhibito	0.853	0.895	0.697	5e-81
255559076	243	Rho GDP-dissociation inhibitor, putative	0.817	0.847	0.720	1e-78
359495546	245	PREDICTED: rho GDP-dissociation inhibito	0.869	0.893	0.682	7e-78

>gi|224137328|ref|XP_002322530.1| predicted protein [Populus trichocarpa] gi|222867160|gb|EEF04291.1| predicted protein [Populus trichocarpa]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 169/232 (72%), Positives = 199/232 (85%), Gaps = 9/232 (3%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEE--NVDE-QSGGMSRQMSENS 57
           MSL  GV+S++K+MG D+K+K   SE +  T  KTPPNEE  NVDE +SGG+SR+MSE+S
Sbjct: 1   MSLEAGVNSNTKSMGFDEKNKEEVSETAATT--KTPPNEEENNVDEPKSGGISRKMSESS 58

Query: 58  ISVTEDEEDD----EDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESL 113
           +  T+ EE+D     +RKIELGPQ TLKEQ EKDKDDESLRRWKEQLLG+VD E+ GE+L
Sbjct: 59  LYGTDQEEEDDEETNERKIELGPQCTLKEQLEKDKDDESLRRWKEQLLGAVDIEAAGETL 118

Query: 114 EPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKY 173
           EPEVKILSL IK+  RPDIVLSVPENG+PKGSWFTLKEGSRYSLQF+F+V+NNIVSGLKY
Sbjct: 119 EPEVKILSLEIKSSGRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKY 178

Query: 174 TNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           TNTVWKTG+KVDS+K M+GTFSPQ EPYT E+PE+TTPSG FARGSY+A+SK
Sbjct: 179 TNTVWKTGIKVDSSKEMIGTFSPQTEPYTHEMPEETTPSGMFARGSYAARSK 230

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224089617|ref|XP_002308781.1| predicted protein [Populus trichocarpa] gi|222854757|gb|EEE92304.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (824), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 164/218 (75%), Positives = 190/218 (87%), Gaps = 8/218 (3%)

Query: 14  MGLDDKDKSNKSEVSGETMPKTPPNEE-NVDE-QSGGMSRQMSENSISVTEDEED----D 67
           MG D+K+K   SE    T  KTPPNEE NVDE +SGG+SR+MSE+S+  T+ EE+     
Sbjct: 1   MGFDEKNKDEVSETKATT--KTPPNEEHNVDEPKSGGISRKMSESSLYATDQEEEDDDES 58

Query: 68  EDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTP 127
            +RKIELGPQYTLKEQ EKDKDDESLRRWKEQLLG+VD E+VGE+LEPEVKILSL IK+P
Sbjct: 59  HERKIELGPQYTLKEQLEKDKDDESLRRWKEQLLGAVDIEAVGETLEPEVKILSLEIKSP 118

Query: 128 SRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST 187
            RPDIVLSVPENG+PKGSWFTLKEGSRYSLQF+F+V+NNIVSGLKY+NTVWKTG+KVDS+
Sbjct: 119 GRPDIVLSVPENGKPKGSWFTLKEGSRYSLQFTFEVKNNIVSGLKYSNTVWKTGVKVDSS 178

Query: 188 KMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           K M+GTFSPQAEPYT E+PE+TTPSG FARGSY+AK+K
Sbjct: 179 KEMIGTFSPQAEPYTHEMPEETTPSGIFARGSYAAKTK 216

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520100|ref|XP_003528703.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  314 bits (804), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 159/228 (69%), Positives = 184/228 (80%), Gaps = 5/228 (2%)

Query: 1   MSLAVGVDSSSKNMGLDD---KDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENS 57
           MSL +GV S+ K+MG DD   KD       +G+T+     ++E+ DE+   +SR MSE S
Sbjct: 1   MSLDIGVVSNCKSMGFDDDKGKDVPETQHAAGKTV--HAHDDESGDERGTSLSRHMSEGS 58

Query: 58  ISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEV 117
           I+VTEDE++D +R+I+LGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGESLEPEV
Sbjct: 59  IAVTEDEDEDVERRIDLGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMTSVGESLEPEV 118

Query: 118 KILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
           KILSLAIK   R DIVL +PE+G P G WFTLKEGSRYSL F+FQV +NIVSGLKYTNTV
Sbjct: 119 KILSLAIKAAGREDIVLPIPESGNPSGLWFTLKEGSRYSLMFTFQVSHNIVSGLKYTNTV 178

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           WKTGLKVDSTK M+GTFSPQAEPYT E+PE+TTPSG FARG YSA+SK
Sbjct: 179 WKTGLKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGLFARGQYSARSK 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443560|ref|XP_004139545.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449508966|ref|XP_004163456.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 163/234 (69%), Positives = 189/234 (80%), Gaps = 12/234 (5%)

Query: 1   MSLAVGVDSSSKN--MGLDDKDKSNKSEVSGETMPKTPPNEENVDEQ-------SGGMSR 51
           MS+AV + SSSK   MG D+KDK  K E   ++ PK    ++  DE+       S GM+R
Sbjct: 1   MSVAVEIGSSSKGIIMGFDEKDKDGKQE---DSSPKLLERKKGEDEEQEVDVVPSSGMTR 57

Query: 52  QMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGE 111
           +MSE+SI  TE+E+D++ RKIELGPQYTLKE  EKDKDDESLRRWKEQLLG VDFESVGE
Sbjct: 58  KMSESSICATEEEDDEDGRKIELGPQYTLKELNEKDKDDESLRRWKEQLLGDVDFESVGE 117

Query: 112 SLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGL 171
           +LEP+VKILSLAIK+  RPDIVL VPE+G PKG WFTLKEGSRYSL+F+FQV NNIVSGL
Sbjct: 118 TLEPDVKILSLAIKSSGRPDIVLPVPESGNPKGLWFTLKEGSRYSLKFTFQVSNNIVSGL 177

Query: 172 KYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           KYTNTVWKTG+KVDSTK M+GTFSPQ EPY  E+ E+TTPSG FARGSYSA+SK
Sbjct: 178 KYTNTVWKTGVKVDSTKEMIGTFSPQPEPYDHEMQEETTPSGIFARGSYSARSK 231

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564466|ref|XP_003550475.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Glycine max]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/226 (69%), Positives = 177/226 (78%), Gaps = 1/226 (0%)

Query: 1   MSLAVGVDSSSK-NMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSIS 59
           MSLA+GV S+ K NMG DD       E+           +E+ DE+   +SR MSE SI+
Sbjct: 1   MSLAIGVVSNCKSNMGFDDNKGKEVPEMQHSGKTVHVHEDESGDERGTSLSRHMSEGSIA 60

Query: 60  VTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKI 119
            TEDE++D +R+I+LGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGESLEPEVKI
Sbjct: 61  ATEDEDEDVERRIDLGPQCTLKEQLEKDKDDESLRRWKEQLLGSVDMTSVGESLEPEVKI 120

Query: 120 LSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWK 179
           LSLAIK   R DIVL +PE+G P G WFTLKEGSRYSL F+FQV +NIVSGLKYTNTVWK
Sbjct: 121 LSLAIKAAGREDIVLPIPESGNPSGLWFTLKEGSRYSLMFTFQVSHNIVSGLKYTNTVWK 180

Query: 180 TGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           TGLKVDSTK M+GTFSPQAEPYT E+PE+TTPSG  ARG YSA+SK
Sbjct: 181 TGLKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGLLARGQYSARSK 226

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508888|gb|AFK42510.1| unknown [Lotus japonicus]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 155/225 (68%), Positives = 183/225 (81%), Gaps = 6/225 (2%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISV 60
           MSLA+GV S+ K+MG DD DK N    +G+T       +E+       ++R +SE+SI++
Sbjct: 1   MSLAIGVVSNCKSMGFDD-DKHNVD--TGKTAIDYASGDEH---HERNLTRHVSESSIAI 54

Query: 61  TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL 120
           TED++DD +RKIELGPQ TLKEQ EKDKDDESLRRWKEQLLGSVD  +VGE+LEPEVKIL
Sbjct: 55  TEDDDDDLERKIELGPQVTLKEQLEKDKDDESLRRWKEQLLGSVDVNAVGETLEPEVKIL 114

Query: 121 SLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           SLAIK+P R DIVL VPE G P G WFTLKEGSRYSL F+FQV +NIVSGLKY NTVWKT
Sbjct: 115 SLAIKSPGRDDIVLPVPETGNPPGLWFTLKEGSRYSLMFTFQVGHNIVSGLKYINTVWKT 174

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           G+KVDSTK M+GTFSPQAEPYT E+PE+TTPSG FARG+YSA++K
Sbjct: 175 GIKVDSTKEMIGTFSPQAEPYTHEMPEETTPSGIFARGTYSARTK 219

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583030|ref|XP_002532283.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223528017|gb|EEF30098.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  307 bits (786), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 161/228 (70%), Positives = 182/228 (79%), Gaps = 10/228 (4%)

Query: 1   MSLAVGVDSSSKNMGLDD-KDKSNKSEVSGETMPKTPPNEENVDEQSG-GMSRQMSENSI 58
           MSLAV   S + NMGLDD K++  KSE S E +       E  D  +G   +RQMSE  +
Sbjct: 1   MSLAVSSSSGTSNMGLDDNKNEEEKSETSHEHL-------EEGDSAAGEKYARQMSETDL 53

Query: 59  SVTEDEEDDE-DRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEV 117
           SV E++ED+E   KIELGPQ TLKE  EKDKDDESLR+WKEQLLGSVDFES+GE+LEPEV
Sbjct: 54  SVNEEDEDEEGSHKIELGPQCTLKEHLEKDKDDESLRKWKEQLLGSVDFESIGETLEPEV 113

Query: 118 KILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTV 177
           KILSL+I +P R DIVLSVPE+G+PKGSWFTLKEGS Y+L FSFQV NNIVSGLKYTNTV
Sbjct: 114 KILSLSIISPGRSDIVLSVPEDGKPKGSWFTLKEGSHYNLMFSFQVSNNIVSGLKYTNTV 173

Query: 178 WKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           WKTG+KVDS K MLGTFSPQ EPYT  +PE+TTPSG FARGSYSAKSK
Sbjct: 174 WKTGVKVDSAKEMLGTFSPQPEPYTHVMPEETTPSGMFARGSYSAKSK 221

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453577|ref|XP_004144533.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus] gi|449515967|ref|XP_004165019.1| PREDICTED: rho GDP-dissociation inhibitor 1-like [Cucumis sativus]

 Score =  306 bits (784), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 157/225 (69%), Positives = 179/225 (79%), Gaps = 10/225 (4%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISV 60
           MSLAVG  S+SKNMG D+    N+ E  G  +     N  N +E +  +SRQMSE S+S 
Sbjct: 1   MSLAVGAASNSKNMGFDE----NREE--GGALD----NHGNENEATEKISRQMSETSLSA 50

Query: 61  TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL 120
           TEDE DDE   IELGPQ TLKE+ EKDKDDESLRRWKEQLLG+VD E+ GE+LEPEVKIL
Sbjct: 51  TEDETDDEGSNIELGPQRTLKEELEKDKDDESLRRWKEQLLGAVDLENAGETLEPEVKIL 110

Query: 121 SLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           SL+I +P RPD+VL +PE+G PKG WFTLKEGSRYSL+FSFQV NNIV+GLKYTNTVWKT
Sbjct: 111 SLSIVSPERPDLVLPIPEDGNPKGLWFTLKEGSRYSLKFSFQVTNNIVAGLKYTNTVWKT 170

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           G+KVDS K MLGTFSPQ E YT  +PEDTTPSG FARGSYSA+SK
Sbjct: 171 GVKVDSAKEMLGTFSPQLETYTHVMPEDTTPSGMFARGSYSARSK 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559076|ref|XP_002520560.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis] gi|223540220|gb|EEF41793.1| Rho GDP-dissociation inhibitor, putative [Ricinus communis]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 155/215 (72%), Positives = 179/215 (83%), Gaps = 9/215 (4%)

Query: 20  DKSNKSEVS-GETMPKTPPNEENVDEQS-------GGMSRQMSENSISVTEDEEDDED-R 70
           D++N  EVS  +T     P+    +EQ        GG+SRQMSE+SI  T+ EE+D++ R
Sbjct: 4   DENNSEEVSETKTASAKSPSAVGAEEQHRVDESKIGGLSRQMSESSIYATDQEEEDDEER 63

Query: 71  KIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP 130
           KIELGPQYTLKEQ EKDKDDESLRRWKEQLLGSVD  +VGE+L+PEVKI+SLAIK+P R 
Sbjct: 64  KIELGPQYTLKEQLEKDKDDESLRRWKEQLLGSVDINAVGETLDPEVKIISLAIKSPGRD 123

Query: 131 DIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMM 190
           DIVLS+PE+G PKG+WFTLKEGSRYSLQF+FQV NNIVSGLKYTNTVWKTG+KVDS K M
Sbjct: 124 DIVLSIPEDGNPKGTWFTLKEGSRYSLQFTFQVGNNIVSGLKYTNTVWKTGVKVDSAKEM 183

Query: 191 LGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           LGTFSPQAEPYT E+PE+TTPSG FARGSYSA+SK
Sbjct: 184 LGTFSPQAEPYTHEMPEETTPSGIFARGSYSARSK 218

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495546|ref|XP_002278188.2| PREDICTED: rho GDP-dissociation inhibitor 1-like [Vitis vinifera]

 Score =  296 bits (757), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 155/227 (68%), Positives = 185/227 (81%), Gaps = 8/227 (3%)

Query: 1   MSLAVGVDSSSKNMGLDDKDKSNKSEVS-GETMPKTPPNEENVDEQSGGMSRQMSENSIS 59
           MSLAVGV SSSK+MG D+ + +  +++S  ++  KTP +EE  DE  G       ENS+ 
Sbjct: 1   MSLAVGVVSSSKSMGFDNNEGAANTDLSETKSTAKTPADEERGDEHGG------CENSVD 54

Query: 60  VTEDEEDDED-RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVK 118
            TE+EE++++ RKIELGPQ+TLKEQ EKDKDDESLRRWKEQLLGSVD  SVGE+LEP+VK
Sbjct: 55  ATEEEEEEDEERKIELGPQFTLKEQLEKDKDDESLRRWKEQLLGSVDLNSVGETLEPDVK 114

Query: 119 ILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVW 178
           IL LAIK+P RPDIVL +PE+G PKG WFTLKEGSRYS+ F+F+V NNIVSGL+ TN VW
Sbjct: 115 ILELAIKSPGRPDIVLPIPESGNPKGLWFTLKEGSRYSMNFAFKVSNNIVSGLRCTNVVW 174

Query: 179 KTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           KTGLKVDSTK MLGTFSPQ E YT E+PE+TTPSG FARG+YSAK+K
Sbjct: 175 KTGLKVDSTKEMLGTFSPQQETYTHEMPEETTPSGIFARGTYSAKTK 221

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2077462	240	SCN1 "SUPERCENTIPEDE1" [Arabid	0.809	0.85	0.604	3.7e-64
TAIR|locus:2027154	223	AT1G62450 [Arabidopsis thalian	0.746	0.843	0.584	7.5e-57
TAIR|locus:2008965	223	AT1G12070 [Arabidopsis thalian	0.710	0.802	0.626	2.5e-56
ASPGD|ASPL0000061086	197	AN0163 [Emericella nidulans (t	0.575	0.736	0.366	1.9e-21
RGD|1305383	200	Arhgdib "Rho, GDP dissociation	0.559	0.705	0.386	4.9e-21
UNIPROTKB|H0YGX7	195	ARHGDIB "Rho GDP-dissociation	0.559	0.723	0.395	6.3e-21
MGI|MGI:101940	200	Arhgdib "Rho, GDP dissociation	0.559	0.705	0.386	6.3e-21
UNIPROTKB|Q9TU03	200	ARHGDIB "Rho GDP-dissociation	0.559	0.705	0.393	8e-21
UNIPROTKB|F1SQW8	200	ARHGDIB "Uncharacterized prote	0.559	0.705	0.393	1e-20
UNIPROTKB|E2RAL0	200	ARHGDIB "Uncharacterized prote	0.559	0.705	0.393	1.3e-20

TAIR|locus:2077462 SCN1 "SUPERCENTIPEDE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
 Identities = 127/210 (60%), Positives = 159/210 (75%)

Query:     9 SSSKNMGLDDKDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTXXXXXXX 68
             S +++MG DD + +NK+   G+   +   +    D+ +  +SRQMSE+S+  T       
Sbjct:     5 SGARDMGFDDNN-NNKNNKDGDD--ENSSSRTRADDDA--LSRQMSESSLCATEEEEDDD 59

Query:    69 XRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS 128
               K++LGPQYT+KE  EKDKDDESLR+WKEQLLGSVD  ++GE+L+PEV+I SLAI +P 
Sbjct:    60 S-KLQLGPQYTIKEHLEKDKDDESLRKWKEQLLGSVDVTNIGETLDPEVRIDSLAIISPG 118

Query:   129 RPDIVLSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTK 188
             RPDIVL VPENG PKG WFTLKEGS+Y+L+F+F V NNIVSGL+YTNTVWKTG+KVD  K
Sbjct:   119 RPDIVLLVPENGNPKGMWFTLKEGSKYNLKFTFHVNNNIVSGLRYTNTVWKTGVKVDRAK 178

Query:   189 MMLGTFSPQAEPYTQELPEDTTPSGFFARG 218
              MLGTFSPQ EPY   +PE+TTPSG FARG
Sbjct:   179 EMLGTFSPQLEPYNHVMPEETTPSGMFARG 208

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009932 "cell tip growth" evidence=IMP

GO:0010053 "root epidermal cell differentiation" evidence=IMP

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2027154 AT1G62450 [Arabidopsis thaliana (taxid:3702)]

 Score = 585 (211.0 bits), Expect = 7.5e-57, P = 7.5e-57
 Identities = 118/202 (58%), Positives = 145/202 (71%)

Query:    19 KDKSNKSEVSGETMPKTPPNEENVDEQSGGMSRQMSENSISVTXXXXXXXXRKIELGPQY 78
             +D+  K E SGET  K             G+SR+ S +S+S T        +K+ELGP  
Sbjct:     4 EDEMKKGEASGETSEKM------------GLSRKNSGSSLSPTEDDEEDEDKKLELGPMI 51

Query:    79 TLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPE 138
              LKEQ E+DKDDESLRRWKEQLLG VD E VGE+ +P VKIL L I++P R ++VL++PE
Sbjct:    52 ALKEQLERDKDDESLRRWKEQLLGVVDLEDVGETPDPVVKILDLTIRSPDREEMVLTIPE 111

Query:   139 NG--RPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSP 196
             +G   PKG WFT+KEGS+Y+L F+F+V NNIVSGL+Y NTVWKTG+KVDSTK MLGTFSP
Sbjct:   112 DGLPNPKGPWFTIKEGSKYTLVFNFRVTNNIVSGLRYNNTVWKTGVKVDSTKAMLGTFSP 171

Query:   197 QAEPYTQELPEDTTPSGFFARG 218
             QAE Y   +PE+ TPSG FARG
Sbjct:   172 QAESYQHVMPEEMTPSGMFARG 193

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

TAIR|locus:2008965 AT1G12070 [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 114/182 (62%), Positives = 140/182 (76%)

Query:    40 ENVDEQSG-GMSRQMSENSISVTXXXXXXXXRKIELGPQYTLKEQFEKDKDDESLRRWKE 98
             E+ +E  G G+SR+ S +S+  T        +K+ELGP   LKEQ EKDKDDESLRRWKE
Sbjct:    12 ESSEEPKGQGLSRKNSHSSMCPTDDDEEEEDKKLELGPMIALKEQLEKDKDDESLRRWKE 71

Query:    99 QLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRP--KGSWFTLKEGSRYS 156
             QLLGSVD E VGE+ +P VKIL+L I++P R D+VL++PENG+P  KG WFTLKEGS+Y+
Sbjct:    72 QLLGSVDLEEVGETPDPLVKILTLTIRSPDREDMVLTIPENGKPASKGPWFTLKEGSKYT 131

Query:   157 LQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFA 216
             L F+F+V NNIVSGL+Y+NTVWKTG+KV S K MLGTFSPQAEPYT  + E+T PSG   
Sbjct:   132 LIFTFRVTNNIVSGLQYSNTVWKTGIKVYSRKEMLGTFSPQAEPYTHVMFEETAPSGLLV 191

Query:   217 RG 218
             RG
Sbjct:   192 RG 193

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS

GO:0007015 "actin filament organization" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

ASPGD|ASPL0000061086 AN0163 [Emericella nidulans (taxid:162425)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/153 (36%), Positives = 92/153 (60%)

Query:    73 ELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKIL-SLAIKTPSRPD 131
             ++G + T+ E  E DK+DESL RWK  L G    E  G+  +P   I+ +LA++   RPD
Sbjct:    17 KVGEKKTIAEYNELDKNDESLNRWKASL-GLNTGEPTGDPNDPRTCIIKTLALEVQGRPD 75

Query:   132 IVLSVPENG---RPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTK 188
             +V+ V   G   + K   FT+KEG+ + ++ +F+V ++++SGLKY   V + G++V   +
Sbjct:    76 VVIDVSAPGALEKLKDKPFTIKEGAHFRIKVTFEVHHDVLSGLKYLQVVKRKGIRVSKDQ 135

Query:   189 MMLGTFSP--QAEP-YTQELPEDTTPSGFFARG 218
              MLG+++P    +P Y ++  E+  PSG  ARG
Sbjct:   136 EMLGSYAPCTTGKPIYEKKFQEEEAPSGMMARG 168

GO:0007015 "actin filament organization" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0032889 "regulation of vacuole fusion, non-autophagic" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005934 "cellular bud tip" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005935 "cellular bud neck" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

RGD|1305383 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Rattus norvegicus (taxid:10116)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 56/145 (38%), Positives = 81/145 (55%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG V    V +   P V +  L++   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNVTVTRLSLVCDSAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  + +  K   F LKEG  Y ++ +F+V  +IVSGLKY    ++ G+KVD    M+G+
Sbjct:    85 DLTGDLKALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQQTYRNGMKVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARG 218
             + P+ E Y    P +  P G  ARG
Sbjct:   145 YGPRPEEYEFLTPVEEAPKGMLARG 169

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|H0YGX7 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Homo sapiens (taxid:9606)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 57/144 (39%), Positives = 79/144 (54%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    23 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 80

Query:   135 SVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTF 194
              + +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G++
Sbjct:    81 DLTDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSY 140

Query:   195 SPQAEPYTQELPEDTTPSGFFARG 218
              P+ E Y    P +  P G  ARG
Sbjct:   141 GPRPEEYEFLTPVEEAPKGMLARG 164

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

MGI|MGI:101940 Arhgdib "Rho, GDP dissociation inhibitor (GDI) beta" [Mus musculus (taxid:10090)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 56/145 (38%), Positives = 81/145 (55%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG V    V +   P V +  L++   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLGDVPV--VADPTVPNVTVTRLSLVCDSAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  +    K   F LKEG  Y ++ +F+V  +IVSGLKY    ++TG++VD    M+G+
Sbjct:    85 DLTGDLEALKKDTFVLKEGIEYRVKINFKVNKDIVSGLKYVQHTYRTGMRVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARG 218
             + P+ E Y    P +  P G  ARG
Sbjct:   145 YGPRPEEYEFLTPVEEAPKGMLARG 169

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|Q9TU03 ARHGDIB "Rho GDP-dissociation inhibitor 2" [Bos taurus (taxid:9913)]

 Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
 Identities = 57/145 (39%), Positives = 80/145 (55%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  +    K   F LKEG  Y ++ +F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct:    85 DLTGDLEALKKETFVLKEGVEYRVKINFKVNKDIVSGLKYVQHTYRTGVKVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARG 218
             + P+ E Y    P +  P G  ARG
Sbjct:   145 YGPRPEEYEFLTPIEEAPKGMLARG 169

GO:0005737 "cytoplasm" evidence=IEA

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|F1SQW8 ARHGDIB "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 57/145 (39%), Positives = 79/145 (54%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLTKYKKTLLG--DGPVVADPSAPNVTVTRLTLVCESAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  +    K   F LKEG  Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct:    85 DLTGDLEALKKETFVLKEGVEYRVKIHFKVNKDIVSGLKYVQHTYRTGVKVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARG 218
             + P+ E Y    P +  P G  ARG
Sbjct:   145 YGPRPEEYEFLTPTEEAPKGMLARG 169

GO:0005737 "cytoplasm" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

UNIPROTKB|E2RAL0 ARHGDIB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 57/145 (39%), Positives = 79/145 (54%)

Query:    76 PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
             PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct:    27 PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVADPTAPNVTVTRLTLVCESAPGPITM 84

Query:   135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
              +  +    K   F LKEG  Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct:    85 DLTGDLEALKKETFVLKEGVEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 144

Query:   194 FSPQAEPYTQELPEDTTPSGFFARG 218
             + P+ E Y    P +  P G  ARG
Sbjct:   145 YGPRPEEYEFLTPAEEAPKGMLARG 169

GO:0005737 "cytoplasm" evidence=IEA

GO:0005094 "Rho GDP-dissociation inhibitor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SFC6	GDIR_ARATH	No assigned EC number	0.7247	0.7023	0.7375	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam02115	200	pfam02115, Rho_GDI, RHO protein GDP dissociation i	7e-64

>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor

 Score =  197 bits (503), Expect = 7e-64
 Identities = 78/165 (47%), Positives = 105/165 (63%), Gaps = 3/165 (1%)

Query: 62  EDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILS 121
           EDEED++    +  PQ +LKE  E DK+DESLR++KE+LLG V    + +  EP V + S
Sbjct: 17  EDEEDEDSVNYKPPPQKSLKEIQELDKEDESLRKYKEKLLGPV--PVLVDPKEPNVVVTS 74

Query: 122 LAIKTPSRPDIVLSVP-ENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT 180
           L + +   P I L +  +  + K   F LKEGS Y L+ SF+V+  IVSGLKY    ++ 
Sbjct: 75  LTLLSEGAPPIELDLTGDLKQLKSQLFVLKEGSEYRLKISFKVQREIVSGLKYVQHTYRA 134

Query: 181 GLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSK 225
           GL+VD TK M+G++ P+AE Y    PE+  PSG  ARGSYSAKSK
Sbjct: 135 GLRVDKTKYMVGSYGPRAEEYEYLTPEEEAPSGALARGSYSAKSK 179

Length = 200

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	100.0
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	100.0
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	96.22
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	94.1
smart00737	118	ML Domain involved in innate immunity and lipid me	91.64
cd00258	162	GM2-AP GM2 activator protein (GM2-AP) is a non-enz	87.89
PF05351	157	GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: I	84.95
PF11797	140	DUF3324: Protein of unknown function C-terminal (D	84.73
cd00912	127	ML The ML (MD-2-related lipid-recognition) domain	80.15

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=100.00  E-value=8.6e-81  Score=540.89  Aligned_cols=196  Identities=52%  Similarity=0.811  Sum_probs=188.9

Q ss_pred             cccccccCCCCCCCccccccccCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCC
Q 025461           49 MSRQMSENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPS  128 (252)
Q Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~eg  128 (252)
                      ++|+++.|+.+.++++|++.+.+|++||||||+||+++|+||||||||||+|||.++  .+++|++|+|+|.+|+|+|+|
T Consensus         1 ms~~~~~s~~~~~~~~e~~~d~~yk~~p~ksl~E~~~~DkdDESL~kwKe~Llg~~~--~~~~~~dp~VvV~~LtLl~~~   78 (200)
T KOG3205|consen    1 MSEKESVSSDHPTEEDEEDEDENYKLPPQKSLKEILELDKDDESLRKWKEQLLGSVD--VIVDPNDPRVVVLKLTLLSEG   78 (200)
T ss_pred             CCccccccccCCCcccccccccccCCCchhhHHHHHhcCcchHHHHHHHHHhCCCCC--cccCCCCCeEEEEEEEEEeCC
Confidence            468889999999999888888999999999999999999999999999999999988  577899999999999999999


Q ss_pred             CCCeEEeCCCCCCC--CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCC
Q 025461          129 RPDIVLSVPENGRP--KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP  206 (252)
Q Consensus       129 r~~i~ldL~~~~~~--k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp  206 (252)
                      |||++|+|++++.+  ++++|+||||++|+|+|+|+|||||||||||+|+|||.||+|||+..|||||+|++|+|+|.+|
T Consensus        79 r~pi~ldlt~~~~~~~k~~~f~iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~MlGSy~P~~e~ye~~~p  158 (200)
T KOG3205|consen   79 RPPIVLDLTGDLSPELKKQWFTIKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKYMLGSYGPQAEPYEFVTP  158 (200)
T ss_pred             CCCeEEeCCCCccccccCceEEeecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhhhcccCCCCCcceeeeCC
Confidence            99999999998876  9999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEec
Q 025461          207 EDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILR  247 (252)
Q Consensus       207 ~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~~  247 (252)
                      +|||||||||||+|+|+|+|+|||++ |||+|+|+|.|.+.
T Consensus       159 ~eeAPsGmlaRG~Ys~~skF~DDDk~-~hLe~~w~~~I~K~  198 (200)
T KOG3205|consen  159 EEEAPSGMLARGSYSAKSKFTDDDKT-CHLEWNWTFDIKKE  198 (200)
T ss_pred             cccCCccceeecceeeeeEEecCCCc-eEEEEEEEEEEeec
Confidence            99999999999999999999999999 89999999999873

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=100.00  E-value=3.4e-77  Score=523.88  Aligned_cols=189  Identities=43%  Similarity=0.700  Sum_probs=150.8

Q ss_pred             cCCCCCCCccccccccCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCCCeEE
Q 025461           55 ENSISVTEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVL  134 (252)
Q Consensus        55 ~~~~~~~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~~i~l  134 (252)
                      +.+.+.++|++++.+.+|++|++|||+||++||++|||||||||||||.++  .++++++|+|+|++|+|+|+|||||+|
T Consensus        10 ~~~~~~~~~~~~~~~~~yk~~~~ksl~e~~~lD~eDESL~k~Ke~LLG~~~--~~~d~~~p~V~v~~l~l~~eg~p~i~l   87 (200)
T PF02115_consen   10 QEEQEEEEDEEDEETPGYKPPPKKSLKEIQELDKEDESLRKWKESLLGSAD--VIGDPNDPKVIVKSLTLVVEGRPPIVL   87 (200)
T ss_dssp             TCCCCTSSSSS---S----------HHHHHHTTTT-HHHHHHHHHHH-SS----SS-STS-SEEEEEEEEEETTSS-EEE
T ss_pred             ccccccccccccccccccCCCccCCHHHHHhcCcCcHHHHHHHHhhcCCCc--ccCCCCCCeEEEEEEEEEcCCCCCeee
Confidence            334455677777778899999999999999999999999999999999887  577889999999999999999999999


Q ss_pred             eCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCce
Q 025461          135 SVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSG  213 (252)
Q Consensus       135 dL~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSG  213 (252)
                      +|+++.. +++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||+++.|||||+|++++|+|+||+|+||||
T Consensus        88 dl~~~~~~~k~~~f~IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~miGsy~P~~e~y~~~~p~eeaPsG  167 (200)
T PF02115_consen   88 DLTGDLEDLKKKPFTIKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREEMIGSYAPQTEPYEKTFPEEEAPSG  167 (200)
T ss_dssp             ETTS-GGGGGGSEEEEETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEEEEE--ESSEEEEEEEEEE--BS
T ss_pred             eccCccccccCCcEEccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccceeeeccCCCCcceEEeCcCccCCCc
Confidence            9998753 489999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEe
Q 025461          214 FFARGSYSAKSKVSSACSAFCSLCFPVTILIIL  246 (252)
Q Consensus       214 mLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~  246 (252)
                      |||||+|+|+|+|+|||++ +||+|+|+|+|++
T Consensus       168 ~laRG~Y~aks~f~DdD~~-~~l~~~w~feI~K  199 (200)
T PF02115_consen  168 MLARGSYTAKSKFVDDDKN-VHLEWEWSFEIKK  199 (200)
T ss_dssp             TTT-EEEEEEEEEEETTSS-ECEEEEEEEEEES
T ss_pred             eeEeeeeeEEEEEEeCCCc-EEEEEEEEEEEec
Confidence            9999999999999999999 7999999999986

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=96.22  E-value=0.091  Score=41.65  Aligned_cols=93  Identities=22%  Similarity=0.326  Sum_probs=65.8

Q ss_pred             eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecc-eEeccc----c-ccccc---cC---CC-CC---CeeeeCC-CC
Q 025461          146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTG-LKVDST----K-MMLGT---FS---PQ-AE---PYTQELP-ED  208 (252)
Q Consensus       146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~G-I~Vdk~----e-~MiGS---Y~---P~-~e---~Y~~~fp-~E  208 (252)
                      +-.++-|..++|.+.|.+.++..++++..-.++-.| ++|--.    . .....   ..   |- +.   .|++.++ +.
T Consensus        25 pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~~~~~~~~CPi~~G~~~~~~~~~~i~~  104 (134)
T PF02221_consen   25 PCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDNLFGNGLSCPIKAGEYYTYTYTIPIPK  104 (134)
T ss_dssp             SEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGTSCCSSTTSTBTTTEEEEEEEEEEEST
T ss_pred             CCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhhcccccccCccCCCcEEEEEEEEEccc
Confidence            456889999999999999999999998877777787 877554    2 23221   11   22 22   2344443 34


Q ss_pred             CCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEE
Q 025461          209 TTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILI  244 (252)
Q Consensus       209 eAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I  244 (252)
                      ..|.     |+|+++-+++|+++. ..+.|...+.|
T Consensus       105 ~~p~-----~~~~i~~~l~d~~~~-~i~C~~~~v~I  134 (134)
T PF02221_consen  105 IYPP-----GKYTIQWKLTDQDGE-EIACFEFPVKI  134 (134)
T ss_dssp             TSSS-----EEEEEEEEEEETTTE-EEEEEEEEEEE
T ss_pred             ceee-----EEEEEEEEEEeCCCC-EEEEEEEEeEC
Confidence            4454     599999999999976 46888888776

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=94.10  E-value=0.64  Score=37.59  Aligned_cols=89  Identities=16%  Similarity=0.180  Sum_probs=58.9

Q ss_pred             eccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc-c---c---cccCCC-CCC--eeeeCCCCCCCceeeeee
Q 025461          149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM-M---L---GTFSPQ-AEP--YTQELPEDTTPSGFFARG  218 (252)
Q Consensus       149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~-M---i---GSY~P~-~e~--Y~~~fp~EeAPSGmLARG  218 (252)
                      ++.|...+|.+.|....++-+|++-.=.++-.||++-.... .   +   |--=|= +-.  |.++   -+-| .++-.|
T Consensus        24 ~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CPi~~G~~~~~~~---~~ip-~~~P~g   99 (122)
T cd00917          24 PAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCPIEPGDKFLTKL---VDLP-GEIPPG   99 (122)
T ss_pred             cCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCCcCCCcEEEEEE---eeCC-CCCCCc
Confidence            77899999999999998887787766678888988764433 1   1   211122 122  3332   2334 455568


Q ss_pred             eeeeeEEEEeCCCCceEEEEEEEE
Q 025461          219 SYSAKSKVSSACSAFCSLCFPVTI  242 (252)
Q Consensus       219 ~Y~akSkFvDDDk~i~hL~~~wsf  242 (252)
                      +|+++.++.|+|+. ....|.+.|
T Consensus       100 ~y~v~~~l~d~~~~-~i~Ci~~~~  122 (122)
T cd00917         100 KYTVSARAYTKDDE-EITCLSFSV  122 (122)
T ss_pred             eEEEEEEEECCCCC-EEEEEEeeC
Confidence            99999999997776 356665543

These proteins belong to the ML domain family.

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=91.64  E-value=1.9  Score=33.86  Aligned_cols=87  Identities=21%  Similarity=0.342  Sum_probs=52.2

Q ss_pred             eccCCeEEEEEEEEEeeeeeecceeEEEEEec-c--eEeccccc-c---ccccCCCC--CCeeeeCCCCCCCceeeeeee
Q 025461          149 LKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKT-G--LKVDSTKM-M---LGTFSPQA--EPYTQELPEDTTPSGFFARGS  219 (252)
Q Consensus       149 IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~-G--I~Vdk~e~-M---iGSY~P~~--e~Y~~~fp~EeAPSGmLARG~  219 (252)
                      ++-|...+|.+.|...+++-+ | ++.+..+. |  |++-.... .   +|..=|-.  +.|.|.+.- ..|+ .+-+|+
T Consensus        21 ~~~g~~~~i~i~f~~~~~~~~-~-~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~~G~~~~~~~~~-~v~~-~~P~~~   96 (118)
T smart00737       21 PVRGKTLTISISFTLNEDISK-L-KVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIEKGETVNYTNSL-TVPG-IFPPGK   96 (118)
T ss_pred             CCCCCEEEEEEEEEEcccceE-E-EEEEEEEECCEEEeccCCCCCccccCCCCCCCCCCeeEEEEEee-Eccc-cCCCeE
Confidence            378899999999999877655 5 45555444 4  55543222 1   23333432  333333321 1232 555789


Q ss_pred             eeeeEEEEeCCCCceEEEEEE
Q 025461          220 YSAKSKVSSACSAFCSLCFPV  240 (252)
Q Consensus       220 Y~akSkFvDDDk~i~hL~~~w  240 (252)
                      |+++..++|+|+. ....|..
T Consensus        97 ~~v~~~l~d~~~~-~i~C~~~  116 (118)
T smart00737       97 YTVKWELTDEDGE-ELACINF  116 (118)
T ss_pred             EEEEEEEEcCCCC-EEEEEEc
Confidence            9999999998877 3565554

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides

Probab=87.89  E-value=8  Score=33.98  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=28.2

Q ss_pred             eCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEE
Q 025461          204 ELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILII  245 (252)
Q Consensus       204 ~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~  245 (252)
                      ..|.=+-| .||.+|+|.++... +.+++ ....++.+|.+.
T Consensus       122 ~lP~~~LP-s~l~~G~Y~i~~~l-~~~g~-~l~C~~~~~sL~  160 (162)
T cd00258         122 TLPNVDLP-SWLTNGNYRITGIL-MADGK-ELGCGKFTFSLE  160 (162)
T ss_pred             ecccccCC-CccCCCcEEEEEEE-CCCCC-EEEEEEEEEEEe
Confidence            45544567 49999999999966 66666 456777777764

GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.

>PF05351 GMP_PDE_delta: GMP-PDE, delta subunit; InterPro: IPR008015 GMP-PDE delta subunit was originally identified as a fourth subunit of rod-specific cGMP phosphodiesterase (PDE) (3

Probab=84.95  E-value=2.6  Score=36.74  Aligned_cols=87  Identities=14%  Similarity=0.155  Sum_probs=63.9

Q ss_pred             EEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeee--eeeEEEE
Q 025461          155 YSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSY--SAKSKVS  227 (252)
Q Consensus       155 Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLARG~Y--~akSkFv  227 (252)
                      -.-+|.|.|-.++|.++|-+|.++=+|-.+..-..-.|=--|++..   ..|.+|  .+..|.-|+ -|.|  ..-|.|.
T Consensus        63 V~~~i~Fsvg~~pv~nFRmierhyF~~~llk~~dF~FGFcIP~S~NTwE~iye~p~l~~~l~~~mi-~gp~et~sdSfyf  141 (157)
T PF05351_consen   63 VGREIEFSVGDEPVNNFRMIERHYFRDQLLKSFDFEFGFCIPNSTNTWEHIYEFPPLSQMLPAEMI-SGPYETKSDSFYF  141 (157)
T ss_dssp             EEEEEEEEE-SS-ECCEEEEEEEEETTEEEEEEEEEEEEE-TTCEEEEEEEEEB--CSCCHHHHHH-CTTTTEEEEEEEE
T ss_pred             heEEEEEEECceeccccEeeEeeeecCceeeEEEeeeeeEcCCCccceeEEEEcCCCCchhHHHHH-cCCCcceEEEEEE
Confidence            3457999998899999999999999999999999988888898753   456666  334444444 3867  5778899


Q ss_pred             eCCCCceEEEEEEEE
Q 025461          228 SACSAFCSLCFPVTI  242 (252)
Q Consensus       228 DDDk~i~hL~~~wsf  242 (252)
                      +||+-|-|=.-.|.|
T Consensus       142 v~~~Limhnka~y~Y  156 (157)
T PF05351_consen  142 VDDKLIMHNKARYFY  156 (157)
T ss_dssp             ETTEEEEEEEEEEEE
T ss_pred             eCCEEEEEEEEEEec
Confidence            999977777666655

1.4.35 from EC). The precise function of PDE delta subunit in the rod specific GMP-PDE complex is unclear. In addition, PDE delta subunit is not confined to photoreceptor cells but is widely distributed in different tissues. PDE delta subunit is thought to be a specific soluble transport factor for certain prenylated proteins and Arl2-GTP a regulator of PDE-mediated transport [].; PDB: 3RBQ_B 3GQQ_C 3T5I_A 3T5G_B 1KSG_B 1KSJ_B 1KSH_B.

>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function

Probab=84.73  E-value=11  Score=31.29  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=57.4

Q ss_pred             EEEEEEEEee---eeeecceeEEEEEecce--EeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCC
Q 025461          156 SLQFSFQVRN---NIVSGLKYTNTVWKTGL--KVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSAC  230 (252)
Q Consensus       156 ~iki~FkVq~---eIVsGLkY~q~VkR~GI--~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDD  230 (252)
                      +-.|..+++|   .+++.|+..-.|+++|=  .+-+.+..-.+.||++. +.|..+++.-   -|.=|.|+++.+...++
T Consensus        43 ~~~i~~~l~N~~~~~l~~~~v~a~V~~~~~~k~~~~~~~~~~~mAPNS~-f~~~i~~~~~---~lk~G~Y~l~~~~~~~~  118 (140)
T PF11797_consen   43 RNVIQANLQNPQPAILKKLTVDAKVTKKGSKKVLYTFKKENMQMAPNSN-FNFPIPLGGK---KLKPGKYTLKITAKSGK  118 (140)
T ss_pred             eeEEEEEEECCCchhhcCcEEEEEEEECCCCeEEEEeeccCCEECCCCe-EEeEecCCCc---CccCCEEEEEEEEEcCC
Confidence            3444455544   47888898888888883  55666666678999986 5555555322   56669999999999999


Q ss_pred             CCceEEEEEEEEEEE
Q 025461          231 SAFCSLCFPVTILII  245 (252)
Q Consensus       231 k~i~hL~~~wsf~I~  245 (252)
                      ++ ||++  =.|.|.
T Consensus       119 ~~-W~f~--k~F~It  130 (140)
T PF11797_consen  119 KT-WTFT--KDFTIT  130 (140)
T ss_pred             cE-EEEE--EEEEEC
Confidence            97 5544  355554

>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi

Probab=80.15  E-value=22  Score=28.42  Aligned_cols=92  Identities=16%  Similarity=0.192  Sum_probs=60.2

Q ss_pred             eEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccc---cccc------cccCCCC--CCeeeeCCCCCCCcee
Q 025461          146 WFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDST---KMML------GTFSPQA--EPYTQELPEDTTPSGF  214 (252)
Q Consensus       146 ~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~---e~Mi------GSY~P~~--e~Y~~~fp~EeAPSGm  214 (252)
                      +=.++-|..++|.+.|..+.++ ..|+-.=.++..||++-..   .-..      +..=|-.  +.|+|..... -|+=+
T Consensus        23 pC~~~~g~~~~i~~~f~~~~~~-~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~CPl~~G~~~~~~~~~~-v~~~~  100 (127)
T cd00912          23 PCPDHRGGNYNLSVTGTLREDI-KSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFCPLRKGQQYSYAKTVN-VPEFT  100 (127)
T ss_pred             CCcccCCCeEEEEEEEEECccc-cEEEEEEEEEECCEEeccCCCCCCcccccCcccccCCcCCCCEEEEEEEEe-cCccc
Confidence            5568899999999999887665 5556666777789876542   2121      3444543  3555554322 34335


Q ss_pred             eeeeeeeeeEEEEeCCCCceEEEEEE
Q 025461          215 FARGSYSAKSKVSSACSAFCSLCFPV  240 (252)
Q Consensus       215 LARG~Y~akSkFvDDDk~i~hL~~~w  240 (252)
                      +.++.|.++..-+|+|+. ....|..
T Consensus       101 ~P~~~~~v~~~l~~~~~~-~v~C~~~  125 (127)
T cd00912         101 IPTIEYQVVLEDVTDKGE-VLACAQA  125 (127)
T ss_pred             CCCeeEEEEEEEEcCCCC-EEEEEec
Confidence            677899999999998887 3555554

These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
1cc0_E	204	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		4e-19
1fst_A	182	Crystal Structure Of Truncated Human Rhogdi Triple		5e-19
1doa_B	219	Structure Of The Rho Family Gtp-Binding Protein Cdc		5e-19
4f38_B	204	Crystal Structure Of Geranylgeranylated Rhoa In Com		5e-19
1ds6_B	180	Crystal Structure Of A Rac-Rhogdi Complex Length =		6e-19
2jhw_A	138	Crystal Structure Of Rhogdi E155a, E157a Mutant Len		3e-13
2jhz_A	138	Crystal Structure Of Rhogdi E155s, E157s Mutant Len		3e-13
1ft3_A	139	Crystal Structure Of Truncated Rhogdi K141a Mutant		3e-13
2jhx_A	138	Crystal Structure Of Rhogdi E155h, E157h Mutant Len		4e-13
2jht_A	138	Crystal Structure Of Rhogdi K135t,K138t,K141t Mutan		5e-13
1ajw_A	145	Structure Of Rhogdi: A C-Terminal Binding Domain Ta		5e-13
1qvy_A	139	Crystal Structure Of Rhogdi K(199,200)r Double Muta		5e-13
1ft0_A	139	Crystal Structure Of Truncated Human Rhogdi K113a M		9e-13
1fso_A	139	Crystal Structure Of Truncated Human Rhogdi Quadrup		1e-12
2jhs_A	138	Crystal Structure Of Rhogdi K135h,K138h,K141h Mutan		1e-12
1kmt_A	141	Crystal Structure Of Rhogdi Glu(154,155)ala Mutant		2e-12
2jhu_A	138	Crystal Structure Of Rhogdi E154a,E155a Mutant Leng		2e-12
2bxw_A	141	Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mut		3e-12
2ji0_A	138	Crystal Structure Of Rhogdi K138y, K141y Mutant Len		4e-12
1rho_A	145	Structure Of Rho Guanine Nucleotide Dissociation In		1e-11

>pdb|1CC0|E Chain E, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 204

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
           Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 89
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
           L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G+
Sbjct: 90  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGS 148
Query: 194 FSPQAEPYTQELPEDTTPSGFFARG 218
           + P+AE Y    P +  P G  ARG
Sbjct: 149 YGPRAEEYEFLTPVEEAPKGMLARG 173

>pdb|1FST|A Chain A, Crystal Structure Of Truncated Human Rhogdi Triple Mutant Length = 182

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 55/145 (37%), Positives = 81/145 (55%), Gaps = 6/145 (4%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP---DIV 133
           Q +++E  E DKDDESLR++KE LLG V   +  +   P V +  L +   S P   ++ 
Sbjct: 10  QKSIQEIQELDKDDESLRKYKEALLGRVAVSA--DPNVPNVVVTGLTLVCSSAPGPLELD 67
Query: 134 LSVPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
           L+       K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D+T  M+G+
Sbjct: 68  LTGDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGS 126
Query: 194 FSPQAEPYTQELPEDTTPSGFFARG 218
           + P+AE Y    P +  P G  ARG
Sbjct: 127 YGPRAEEYEFLTPVEEAPKGMLARG 151

>pdb|1DOA|B Chain B, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In Complex With The Multifunctional Regulator Rhogdi Length = 219

Iteration: 1
 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
           Q +++E  E DKDDESLR++KE LLG V   +        V  L+L   T   P ++ L+
Sbjct: 47  QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 106
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                  K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ 
Sbjct: 107 GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 165
Query: 196 PQAEPYTQELPEDTTPSGFFARG 218
           P+AE Y    P +  P G  ARG
Sbjct: 166 PRAEEYEFLTPMEEAPKGMLARG 188

>pdb|4F38|B Chain B, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 204

Iteration: 1
 Score = 90.9 bits (224), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 56/143 (39%), Positives = 79/143 (55%), Gaps = 2/143 (1%)
Query: 77  QYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLS 135
           Q +++E  E DKDDESLR++KE LLG V   +        V  L+L   T   P ++ L+
Sbjct: 32  QKSIQEIQELDKDDESLRKYKEALLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLT 91
Query: 136 VPENGRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFS 195
                  K S F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ 
Sbjct: 92  GDLESFKKQS-FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYG 150
Query: 196 PQAEPYTQELPEDTTPSGFFARG 218
           P+AE Y    P +  P G  ARG
Sbjct: 151 PRAEEYEFLTPMEEAPKGMLARG 173

>pdb|1DS6|B Chain B, Crystal Structure Of A Rac-Rhogdi Complex Length = 180

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 57/145 (39%), Positives = 79/145 (54%), Gaps = 4/145 (2%)
Query: 76  PQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IVL 134
           PQ +LKE  E DKDDESL ++K+ LLG  D   V +   P V +  L +   S P  I +
Sbjct: 7   PQKSLKELQEMDKDDESLIKYKKTLLG--DGPVVTDPKAPNVVVTRLTLVCESAPGPITM 64
Query: 135 SVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGT 193
            +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G+
Sbjct: 65  DLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGS 124
Query: 194 FSPQAEPYTQELPEDTTPSGFFARG 218
           + P+ E Y    P +  P G  ARG
Sbjct: 125 YGPRPEEYEFLTPVEEAPKGMLARG 149

>pdb|2JHW|A Chain A, Crystal Structure Of Rhogdi E155a, E157a Mutant Length = 138

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEAYAFLTP 97
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 98  VEEAPKGMLARG 109

>pdb|2JHZ|A Chain A, Crystal Structure Of Rhogdi E155s, E157s Mutant Length = 138

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y+   P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAESYSFLTP 97
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 98  VEEAPKGMLARG 109

>pdb|1FT3|A Chain A, Crystal Structure Of Truncated Rhogdi K141a Mutant Length = 139

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D+T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 97  VEEAPKGMLARG 108

>pdb|2JHX|A Chain A, Crystal Structure Of Rhogdi E155h, E157h Mutant Length = 138

Iteration: 1
 Score = 71.2 bits (173), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEHYHFLTP 97
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 98  VEEAPKGMLARG 109

>pdb|2JHT|A Chain A, Crystal Structure Of Rhogdi K135t,K138t,K141t Mutant Length = 138

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 45/72 (62%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++TG+ +D+T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRTGVTIDTTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 98  VEEAPKGMLARG 109

>pdb|1AJW|A Chain A, Structure Of Rhogdi: A C-Terminal Binding Domain Targets An N-Terminal Inhibitory Peptide To Gtpases, Nmr, 20 Structures Length = 145

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 43  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 102
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 103 MEEAPKGMLARG 114

>pdb|1QVY|A Chain A, Crystal Structure Of Rhogdi K(199,200)r Double Mutant Length = 139

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 44/72 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 97  VEEAPKGMLARG 108

>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant Length = 139

Iteration: 1
 Score = 70.5 bits (171), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 31/72 (43%), Positives = 43/72 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y +  SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 97  VEEAPKGMLARG 108

>pdb|1FSO|A Chain A, Crystal Structure Of Truncated Human Rhogdi Quadruple Mutant Length = 139

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 44/72 (61%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D+T  M+G++ P+AE Y    P
Sbjct: 37  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRAGVAIDATDYMVGSYGPRAEEYEFLTP 96
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 97  VEEAPKGMLARG 108

>pdb|2JHS|A Chain A, Crystal Structure Of Rhogdi K135h,K138h,K141h Mutant Length = 138

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRHGVHIDHTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 98  VEEAPKGMLARG 109

>pdb|1KMT|A Chain A, Crystal Structure Of Rhogdi Glu(154,155)ala Mutant Length = 141

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+A  Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 98
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 99  VEEAPKGMLARG 110

>pdb|2JHU|A Chain A, Crystal Structure Of Rhogdi E154a,E155a Mutant Length = 138

Iteration: 1
 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+A  Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTP 97
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 98  VEEAPKGMLARG 109

>pdb|2BXW|A Chain A, Crystal Structure Of Rhogdi Lys(135,138,141)tyr Mutant Length = 141

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 39  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRYGVYIDYTDYMVGSYGPRAEEYEFLTP 98
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 99  VEEAPKGMLARG 110

>pdb|2JI0|A Chain A, Crystal Structure Of Rhogdi K138y, K141y Mutant Length = 138

Iteration: 1
 Score = 68.2 bits (165), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 43/72 (59%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG+KY    ++ G+ +D T  M+G++ P+AE Y    P
Sbjct: 38  FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVYIDYTDYMVGSYGPRAEEYEFLTP 97
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 98  VEEAPKGMLARG 109

>pdb|1RHO|A Chain A, Structure Of Rho Guanine Nucleotide Dissociation Inhibitor Length = 145

Iteration: 1
 Score = 66.2 bits (160), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/72 (41%), Positives = 42/72 (58%)
Query: 147 FTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELP 206
           F LKEG  Y ++ SF+V   IVSG KY    ++ G+K+D T   +G++ P+AE Y    P
Sbjct: 44  FVLKEGVEYRIKISFRVNREIVSGXKYIEHTYRKGVKIDKTDYXVGSYGPRAEEYEFLTP 103
Query: 207 EDTTPSGFFARG 218
            +  P G  ARG
Sbjct: 104 VEEAPKGXLARG 115

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	1e-57
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	1e-56
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	3e-43

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E* Length = 219

 Score =  181 bits (461), Expect = 1e-57
 Identities = 66/187 (35%), Positives = 96/187 (51%), Gaps = 7/187 (3%)

Query: 47  GGMSRQMSENSISVT-------EDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQ 99
           GG+   M+E   +         E+EED+     +   Q +++E  E DKDDESLR++KE 
Sbjct: 10  GGILGLMAEQEPTAEQLAQIAAENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEA 69

Query: 100 LLGSVDFESVGESLEPEVKILSLAIKTPSRPDIVLSVPENGRPKGSWFTLKEGSRYSLQF 159
           LLG V   +        V  L+L   T   P  +    +    K   F LKEG  Y ++ 
Sbjct: 70  LLGRVAVSADPNVPNVVVTRLTLVCSTAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKI 129

Query: 160 SFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGS 219
           SF+V   IVSG+KY    ++ G+K+D T  M+G++ P+AE Y    P +  P G  ARGS
Sbjct: 130 SFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARGS 189

Query: 220 YSAKSKV 226
           Y+ KS+ 
Sbjct: 190 YNIKSRF 196

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A Length = 180

 Score =  177 bits (451), Expect = 1e-56
 Identities = 59/154 (38%), Positives = 82/154 (53%), Gaps = 4/154 (2%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IV 133
            PQ +LKE  E DKDDESL ++K+ LLG      V +   P V +  L +   S P  I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 134 LSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG 192
           + +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVG 123

Query: 193 TFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKV 226
           ++ P+ E Y    P +  P G  ARG+Y  KS  
Sbjct: 124 SYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFF 157

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A Length = 141

 Score =  142 bits (360), Expect = 3e-43
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 112 SLEPEVKILSLAIKTPSRPD-IVLSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVS 169
           ++ P V +  L +   S P  + L +  +    K   F LKEG  Y ++ SF+V   IVS
Sbjct: 2   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 61

Query: 170 GLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKV 226
           G+KY    ++ G+K+D T  M+G++ P+A  Y    P +  P G  ARGSYS KS+ 
Sbjct: 62  GMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRF 118

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	100.0
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	100.0
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	100.0
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	93.89
1nep_A	130	EPV20, BNPC2, epididymal secretory protein E1; nie	89.01
4goj_C	240	Protein UNC-119 homolog A; small G protein ARL, GD	83.39

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=100.00  E-value=1.7e-77  Score=530.00  Aligned_cols=184  Identities=35%  Similarity=0.582  Sum_probs=172.6

Q ss_pred             CCccccccccCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCC
Q 025461           61 TEDEEDDEDRKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPEN  139 (252)
Q Consensus        61 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~-~i~ldL~~~  139 (252)
                      .|+++++.+.+|++|++|||+||++|||||||||||||||||.++  ++.++++|+|+|++|+|+|+||| ||+|+|+++
T Consensus        31 ~~~~~~~~~~~yk~~~~ksl~E~~~lD~~DESL~kwKesLlg~~~--~~~d~~~P~V~i~~l~l~~~grp~pi~ldl~~~  108 (219)
T 1doa_B           31 AENEEDEHSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGRVA--VSADPNVPNVVVTRLTLVCSTAPGPLELDLTGD  108 (219)
T ss_dssp             SSSSSCCCSCCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHHCCCC--CCCCSSCCSBCCCEEEEECSSCSSCCEEECSSC
T ss_pred             ccccccccccCcccCCccCHHHHHhhCcchhHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEeCCCC
Confidence            445556667889999999999999999999999999999998876  46678899999999999999995 599999877


Q ss_pred             CCC-CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeee
Q 025461          140 GRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARG  218 (252)
Q Consensus       140 ~~~-k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG  218 (252)
                      ... ++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||
T Consensus       109 ~~~lk~~~F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~MlGSY~P~~e~y~~~~p~EeAPSGmLARG  188 (219)
T 1doa_B          109 LESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPMEEAPKGMLARG  188 (219)
T ss_dssp             CGGGGGCCEEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCTTSCCS
T ss_pred             hhhhcCCCEEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcceeeeccCCCCCcccccCCCccCCccceeee
Confidence            543 9999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeeeEEEEeCCCCceEEEEEEEEEEEec
Q 025461          219 SYSAKSKVSSACSAFCSLCFPVTILIILR  247 (252)
Q Consensus       219 ~Y~akSkFvDDDk~i~hL~~~wsf~I~~~  247 (252)
                      +|+|+|+|+|||++ +||+|+|+|+|++.
T Consensus       189 ~Y~akSkF~DDD~~-~hL~~eWsfeI~Kd  216 (219)
T 1doa_B          189 SYNIKSRFTDDDRT-DHLSWEWNLTIKKE  216 (219)
T ss_dssp             EEEEEEEEECTTCC-CCEEEEEEEEEESS
T ss_pred             eeeeeEEEEeCCCc-eEEEEEEEEEEecC
Confidence            99999999999999 89999999999874

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=100.00  E-value=5.9e-77  Score=514.05  Aligned_cols=175  Identities=34%  Similarity=0.533  Sum_probs=167.0

Q ss_pred             cCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCC-CCeEEeCCCCCC-CCCceE
Q 025461           70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSR-PDIVLSVPENGR-PKGSWF  147 (252)
Q Consensus        70 ~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr-~~i~ldL~~~~~-~k~~~F  147 (252)
                      ++|++|++|||+||++|||||||||||||||||.++  +++++++|+|+|++|+|+++|| +||+++|+++.. +++.+|
T Consensus         1 ~~yk~~~~ksl~e~~~~D~~DESL~k~K~~Llg~~~--~~~~~~~p~v~i~~l~l~~~~~~~pi~~dl~~~~~~~k~~~f   78 (180)
T 1ds6_B            1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (180)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCcCCccCHHHHHhhCcchHHHHHHHHHhcCCCC--CcCCCCCCeEEEEEEEEEeCCCCCCEEEECCCChhhccCCCE
Confidence            369999999999999999999999999999999876  5678899999999999999999 889999998753 389999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEE
Q 025461          148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS  227 (252)
Q Consensus       148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFv  227 (252)
                      +|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++|||||+|++++|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~skF~  158 (180)
T 1ds6_B           79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (180)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceEeeeccCCCCCceeecCCCccCCcceeeeeeeeeeEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceEEEEEEEEEEEec
Q 025461          228 SACSAFCSLCFPVTILIILR  247 (252)
Q Consensus       228 DDDk~i~hL~~~wsf~I~~~  247 (252)
                      |||++ +||+|+|+|+|++.
T Consensus       159 DDD~~-~hl~~~wsfeI~Kd  177 (180)
T 1ds6_B          159 DDDKQ-DHLSWEWNLSIKKE  177 (180)
T ss_dssp             CTTCC-CCEEEEEEEEEESS
T ss_pred             cCCCc-eEEEEEEEEEEeeC
Confidence            99999 89999999999874

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=100.00  E-value=2.3e-59  Score=391.00  Aligned_cols=135  Identities=33%  Similarity=0.579  Sum_probs=128.6

Q ss_pred             CCCCcEEEEEEEEEcCCCC-CeEEeCCCCCC-CCCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccc
Q 025461          112 SLEPEVKILSLAIKTPSRP-DIVLSVPENGR-PKGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKM  189 (252)
Q Consensus       112 ~~~P~V~I~~L~L~~egr~-~i~ldL~~~~~-~k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~  189 (252)
                      |++|+|+|++|+|+++||| ||+|+|+++.. +++.+|+|||||+|+|+|+|+|||+|||||||+|+|||+||+||++++
T Consensus         2 p~~p~v~i~~l~l~~~~~~~pi~~~l~~~~~~~k~~~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~   81 (141)
T 1kmt_A            2 AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY   81 (141)
T ss_dssp             CBCCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE
T ss_pred             CCCCeEEEEEEEEEeCCCCCCEEEeCCCChhhhccCceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE
Confidence            4678999999999999965 69999998753 399999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEec
Q 025461          190 MLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIILR  247 (252)
Q Consensus       190 MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~~  247 (252)
                      |||||+|++++|+|+||+|||||||||||+|+|+|+|+|||++ +||+|+|+|+|++.
T Consensus        82 mlGsy~P~~e~y~~~~~~eeaPsG~laRG~Y~a~s~F~DDD~~-~hl~~~w~feI~Kd  138 (141)
T 1kmt_A           82 MVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKT-DHLSWEWNLTIKKD  138 (141)
T ss_dssp             EEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCC-CSEEEEEEEEEESC
T ss_pred             eeeccCCCCCcceecCCCccCCceeEEeeeeeeeEEEEcCCCc-EEEEEEEeEEEecC
Confidence            9999999999999999999999999999999999999999999 89999999999874

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*

Probab=93.89  E-value=0.37  Score=39.96  Aligned_cols=40  Identities=23%  Similarity=0.416  Sum_probs=31.1

Q ss_pred             eeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEE
Q 025461          203 QELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILII  245 (252)
Q Consensus       203 ~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~  245 (252)
                      +.+|..+.|+ +|..|.|+++..+.|+++.+  ..+...|.|.
T Consensus       123 ~~lp~~~lP~-~l~~G~Y~v~~~~~~~~~~l--~Ci~~~~~l~  162 (164)
T 2ag4_A          123 FVVPDLELPS-WLTTGNYRIESVLSSSGKRL--GCIKIAASLK  162 (164)
T ss_dssp             EEECCCCCCT-TCSSEEEEEEEEEEETTEEE--EEEEEEEEEE
T ss_pred             eecCcccccC-ccCCceEEEEEEEecCCCEE--EEEEEEEEEE
Confidence            6677778998 99999999999999977765  5555555553

>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*

Probab=89.01  E-value=4.4  Score=31.89  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=66.4

Q ss_pred             CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEec--ccc-cc--ccccCCCC--CC--eeeeCCC-CCCCce
Q 025461          144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVD--STK-MM--LGTFSPQA--EP--YTQELPE-DTTPSG  213 (252)
Q Consensus       144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vd--k~e-~M--iGSY~P~~--e~--Y~~~fp~-EeAPSG  213 (252)
                      ..|=.|+-|..++|.|.|.-+.+ +++|+-.=.++=.|+++-  -.+ .-  -|..=|=.  +.  |.+.+|. ...|. 
T Consensus        25 ~~PC~l~rG~~~~i~i~f~~~~~-~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lpV~~~~P~-  102 (130)
T 1nep_A           25 TQPCKLHRGQSYSVNVTFTSNTQ-SQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPS-  102 (130)
T ss_dssp             SSSEEEETTCEEEEEEEEEESSC-BSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSCS-
T ss_pred             CCCCEEEcCCeEEEEEEEEcccc-cceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeEecccCCC-
Confidence            45778999999999999999877 577777666677888773  111 11  13222422  33  4555552 34554 


Q ss_pred             eeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEe
Q 025461          214 FFARGSYSAKSKVSSACSAFCSLCFPVTILIIL  246 (252)
Q Consensus       214 mLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~  246 (252)
                          ++|.++-..+|+++. ....|...+.|++
T Consensus       103 ----~~~~v~~~L~d~~~~-~l~C~~~~~~I~~  130 (130)
T 1nep_A          103 ----IKVVVEWELTDDKNQ-RFFCWQIPIEVEA  130 (130)
T ss_dssp             ----SEEEEEEEEECTTSC-EEEEEEEEEEEEC
T ss_pred             ----ccEEEEEEEEcCCCC-EEEEEEEeEEEEC
Confidence                679999999999987 4788888888874

>4goj_C Protein UNC-119 homolog A; small G protein ARL, GDI-like solubilizing factors, cilia, S protein; HET: GNP; 2.10A {Homo sapiens} PDB: 4gok_G*

Probab=83.39  E-value=0.68  Score=41.49  Aligned_cols=128  Identities=11%  Similarity=0.152  Sum_probs=84.8

Q ss_pred             CcEEEEEEEEEcCCCCCeEEeCCCCCCCC-----CceEEeccC--CeEEEE------------EEEEEeeeeeecceeEE
Q 025461          115 PEVKILSLAIKTPSRPDIVLSVPENGRPK-----GSWFTLKEG--SRYSLQ------------FSFQVRNNIVSGLKYTN  175 (252)
Q Consensus       115 P~V~I~~L~L~~egr~~i~ldL~~~~~~k-----~~~F~IKEG--s~Y~ik------------i~FkVq~eIVsGLkY~q  175 (252)
                      -++.+.+|.|-=-....+-+++..+....     ...+---.|  +.|++.            |.|.|-.++|.+||-+|
T Consensus        84 y~I~F~~F~IRD~etg~vlFei~kp~~~~~~~~~~~~~d~~agR~VrY~F~p~FLklktVga~i~Fsvgdkpv~nFRmiE  163 (240)
T 4goj_C           84 YKIDFVRFKIRDMDSGTVLFEIKKPPVSERLPINRRDLDPNAGRFVRYQFTPAFLRLRQVGATVEFTVGDKPVNNFRMIE  163 (240)
T ss_dssp             TCCEEEEEEEEETTTCCEEEEEEC------------------CCEEEEEECGGGGGCSEEEEEEEEECCSSCEEEEEEEE
T ss_pred             cCcceeEEEEecCCCCeEEEEecCCCccccccccccccCcccCceEEEecCHHHhcccceeeEEEEeeCceehhcceeee
Confidence            36778888887544444445543221100     001111123  457765            99999888999999999


Q ss_pred             EEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeeee--eeEEEEeCCCCceEEEEEEEEE
Q 025461          176 TVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSYS--AKSKVSSACSAFCSLCFPVTIL  243 (252)
Q Consensus       176 ~VkR~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLARG~Y~--akSkFvDDDk~i~hL~~~wsf~  243 (252)
                      .++=+|.-+..-.+-.|=--|+...   ..|.+|  .+..|.-|+. |.|-  ..|.|.+||+-|-|=.-+|+|+
T Consensus       164 RhyFrd~lLksfDFeFGFcIPnS~NTWE~IyE~p~ls~~l~~emi~-~p~Et~sdSFYFvddkLvMHNKAdY~Y~  237 (240)
T 4goj_C          164 RHYFRNQLLKSFDFHFGFCIPSSKNTCEHIYDFPPLSEELISEMIR-HPYETQSDSFYFVDDRLVMHNKADYSYS  237 (240)
T ss_dssp             EEEETTEEEEEEEEEEEEECTTCEEEEEEEEECCCCCHHHHHHHHH-STTCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             hhhhcccchheeccccceeccCCcccceeEEecCCcchhhHHHHHh-CCCceeeeeeEEECCEEEEcchhhcccC
Confidence            9999999999999999988898753   466666  3344555555 8884  3466668898777888888774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1ds6b_	179	b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, Rh	2e-66
d1kmta_	138	b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, Rh	2e-48

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 179

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  201 bits (514), Expect = 2e-66
 Identities = 59/154 (38%), Positives = 82/154 (53%), Gaps = 4/154 (2%)

Query: 75  GPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRPD-IV 133
            PQ +LKE  E DKDDESL ++K+ LLG      V +   P V +  L +   S P  I 
Sbjct: 6   PPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPIT 63

Query: 134 LSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLG 192
           + +  +    K     LKEGS Y ++  F+V  +IVSGLKY    ++TG+KVD    M+G
Sbjct: 64  MDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVG 123

Query: 193 TFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKV 226
           ++ P+ E Y    P +  P G  ARG+Y  KS  
Sbjct: 124 SYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFF 157

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  154 bits (391), Expect = 2e-48
 Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 2/117 (1%)

Query: 112 SLEPEVKILSLAIKTPSRPD-IVLSVPEN-GRPKGSWFTLKEGSRYSLQFSFQVRNNIVS 169
           ++ P V +  L +   S P  + L +  +    K   F LKEG  Y ++ SF+V   IVS
Sbjct: 1   AMVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVS 60

Query: 170 GLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKV 226
           G+KY    ++ G+K+D T  M+G++ P+A  Y    P +  P G  ARGSYS KS+ 
Sbjct: 61  GMKYIQHTYRKGVKIDKTDYMVGSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRF 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	100.0
d1kshb_	149	GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}	92.4
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	88.48
d2ag4a1	163	Ganglioside M2 (gm2) activator {Human (Homo sapien	87.74

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.7e-76  Score=505.99  Aligned_cols=174  Identities=35%  Similarity=0.557  Sum_probs=165.1

Q ss_pred             cCccCCcccCHHHHHhcCCcchHHHHHHHHhcCCCCCccCCCCCCCcEEEEEEEEEcCCCC-CeEEeCCCCCCC-CCceE
Q 025461           70 RKIELGPQYTLKEQFEKDKDDESLRRWKEQLLGSVDFESVGESLEPEVKILSLAIKTPSRP-DIVLSVPENGRP-KGSWF  147 (252)
Q Consensus        70 ~~yk~~~~ksl~E~~~lD~eDESL~kwKesLLG~~~~~~~~~~~~P~V~I~~L~L~~egr~-~i~ldL~~~~~~-k~~~F  147 (252)
                      .+|+|||+|||+||++|||||||||||||||||.++  .++++++|+|+|++|+|+|+++| +|+|||+++... ++.+|
T Consensus         1 ~nyk~~~~ksl~E~~~~D~~DESL~kwKe~Llg~~~--~~~~~~~p~V~i~~l~l~~~~~p~~i~~dl~~~~~~lk~~~f   78 (179)
T d1ds6b_           1 GNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGP--VVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETI   78 (179)
T ss_dssp             CCCCCCCCCCHHHHHHTTTTCHHHHHHHHHHTCCSC--CCCCSSSCSCCEEEEEEECTTCSSCCEEETTSCHHHHHHCEE
T ss_pred             CCcCCCCccCHHHHHhcCcChhHHHHHHHHhcCCCc--ccCCCCCCcEEEEEeEEEcCCCCCCeEecCCCccccccCCCE
Confidence            379999999999999999999999999999999765  46688999999999999999987 599999876433 88999


Q ss_pred             EeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEE
Q 025461          148 TLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVS  227 (252)
Q Consensus       148 ~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFv  227 (252)
                      +|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++|||||+|++|+|+|+||+|||||||||||+|+|+|+|+
T Consensus        79 ~IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~Vdk~~~mlGsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~F~  158 (179)
T d1ds6b_          79 VLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFT  158 (179)
T ss_dssp             EEETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEEEEEEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEE
T ss_pred             EecCCCEEEEEEEEEEecccccCcEEEEEEEECCEEEcceeEeeeccCCCCCceeEeCCCccCCceeEEeecceEEEEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceEEEEEEEEEEEe
Q 025461          228 SACSAFCSLCFPVTILIIL  246 (252)
Q Consensus       228 DDDk~i~hL~~~wsf~I~~  246 (252)
                      |||++ +||+|+|+|+|.+
T Consensus       159 DDD~~-~~l~~~w~feI~K  176 (179)
T d1ds6b_         159 DDDKQ-DHLSWEWNLSIKK  176 (179)
T ss_dssp             CTTCC-CCEEEEEEEEEES
T ss_pred             cCCCc-EEEEEEEEEEEec
Confidence            99999 7999999999986

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.5e-58  Score=378.53  Aligned_cols=132  Identities=33%  Similarity=0.593  Sum_probs=127.3

Q ss_pred             CCcEEEEEEEEEcCCCC-CeEEeCCCCCCC-CCceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEeccccccc
Q 025461          114 EPEVKILSLAIKTPSRP-DIVLSVPENGRP-KGSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMML  191 (252)
Q Consensus       114 ~P~V~I~~L~L~~egr~-~i~ldL~~~~~~-k~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~Mi  191 (252)
                      .|+|+|++|+|+|+++| +|.|+|+++... ++.+|+|||||+|+|+|+|+|||+||+||||+|+|||+||+||++++||
T Consensus         3 ~P~V~v~~l~l~~~~~P~~i~ldl~~~l~~lk~~~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~Vdk~~~mv   82 (138)
T d1kmta_           3 VPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMV   82 (138)
T ss_dssp             CCSEEEEEEEEECTTSSSCCEEETTSCGGGGGGCCEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCceEEEEEEEEcCCCCCCEEEcCCCchhHhcCCCEEecCCCEEEEEEEEEEccccccCcEEEEEEEECCEEEcceeEee
Confidence            58999999999999997 599999988543 9999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCeeeeCCCCCCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEe
Q 025461          192 GTFSPQAEPYTQELPEDTTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILIIL  246 (252)
Q Consensus       192 GSY~P~~e~Y~~~fp~EeAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~  246 (252)
                      |||+|++|+|+|+||+|||||||||||+|+|+|+|+|||++ +||+|+|+|+|.+
T Consensus        83 Gsy~P~~e~y~~~~p~eeaPsG~laRG~Y~a~s~f~Ddd~~-~~l~~~w~feI~K  136 (138)
T d1kmta_          83 GSYGPRAAAYEFLTPVEEAPKGMLARGSYSIKSRFTDDDKT-DHLSWEWNLTIKK  136 (138)
T ss_dssp             EEECCCSSCEEEECCCEECCCSTTTCEEEEEEEEEECTTCC-CSEEEEEEEEEES
T ss_pred             eccCCCCCcEEEeCCCccCCceEEEeeeeeEEEEEEcCCCc-EEEEEEEEEEEec
Confidence            99999999999999999999999999999999999999999 7999999999986

>d1kshb_ b.1.18.8 (B:) GMP-PDE delta {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: GMP-PDE delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.40  E-value=0.13  Score=41.26  Aligned_cols=85  Identities=12%  Similarity=0.152  Sum_probs=66.8

Q ss_pred             EEEEEEEEeeeeeecceeEEEEEecceEeccccccccccCCCCCC---eeeeCC--CCCCCceeeeeeeeeeeEEEEeCC
Q 025461          156 SLQFSFQVRNNIVSGLKYTNTVWKTGLKVDSTKMMLGTFSPQAEP---YTQELP--EDTTPSGFFARGSYSAKSKVSSAC  230 (252)
Q Consensus       156 ~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk~e~MiGSY~P~~e~---Y~~~fp--~EeAPSGmLARG~Y~akSkFvDDD  230 (252)
                      .-+|.|.|. ++|.++|-+|.++=+|-.+..-..-.|=--|+...   ..|.+|  .+..|.-||+ |.-..-|.|.|||
T Consensus        59 ~~~i~Fs~~-e~i~~Frmierhyfr~~lle~~dFeFGF~IP~S~NTwe~iye~p~~~~~~~~~~l~-g~~~~dt~yf~~d  136 (149)
T d1kshb_          59 SRELNFSST-EQMEKFRLEQKVYFKGQCLEEWFFEFGFVIPNSTNTWQSLIEAAPESQMMPASVLT-GNVIIETKFFDDD  136 (149)
T ss_dssp             EEEEEEEES-SCEEEEEEEEEEEETTEEEEEEEEEEEEECTTEEEEEEEEEC-------CCSTTTT-TSEEEEEEEEETT
T ss_pred             ceEEEEecC-cccccceEEEEEeecCceeeEEEeeeeeEecCCCcchhheeecCCccccchHHHhc-CCeEEEEEEEECC
Confidence            446889996 68999999999999999999999999988898752   455665  4478888888 6778899999999


Q ss_pred             CCceEEEEEEEE
Q 025461          231 SAFCSLCFPVTI  242 (252)
Q Consensus       231 k~i~hL~~~wsf  242 (252)
                      +-|.|=...|.|
T Consensus       137 ~Li~~nka~y~Y  148 (149)
T d1kshb_         137 LLVSTSRVRLFY  148 (149)
T ss_dssp             EEEEEEEEEEEE
T ss_pred             EEEEeeeEEEEe
Confidence            987777766654

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.48  E-value=3  Score=30.94  Aligned_cols=96  Identities=17%  Similarity=0.235  Sum_probs=66.1

Q ss_pred             CceEEeccCCeEEEEEEEEEeeeeeecceeEEEEEecceEecc-----ccccccccCCCC--CC--eeeeCC-CCCCCce
Q 025461          144 GSWFTLKEGSRYSLQFSFQVRNNIVSGLKYTNTVWKTGLKVDS-----TKMMLGTFSPQA--EP--YTQELP-EDTTPSG  213 (252)
Q Consensus       144 ~~~F~IKEGs~Y~iki~FkVq~eIVsGLkY~q~VkR~GI~Vdk-----~e~MiGSY~P~~--e~--Y~~~fp-~EeAPSG  213 (252)
                      ..|=.|+.|...+|.|.|....++ .+|+-.=.++=.||++--     ..-.-|..=|=.  +.  |.+.+| +...|  
T Consensus        25 ~~PC~l~rG~~~~i~i~f~~~~~~-~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~CPl~~G~~~~y~~~~~I~~~~P--  101 (130)
T d1nepa_          25 TQPCKLHRGQSYSVNVTFTSNTQS-QSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYP--  101 (130)
T ss_dssp             SSSEEEETTCEEEEEEEEEESSCB-SCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEECCTTSC--
T ss_pred             CCCCEeeCCCEEEEEEEEEcCccc-ceEEEEEEEEECCEEecccCCCCcccccCCcCCccCCceEEEEEEEEcchhhc--
Confidence            346779999999999999998775 678877777788887542     111223333422  23  455554 23444  


Q ss_pred             eeeeeeeeeeEEEEeCCCCceEEEEEEEEEEEe
Q 025461          214 FFARGSYSAKSKVSSACSAFCSLCFPVTILIIL  246 (252)
Q Consensus       214 mLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~~  246 (252)
                         +++|+++-..+|++++ ....|....+|.+
T Consensus       102 ---~~~~~v~~~l~d~~~~-~i~Cf~v~~~I~~  130 (130)
T d1nepa_         102 ---SIKVVVEWELTDDKNQ-RFFCWQIPIEVEA  130 (130)
T ss_dssp             ---SSEEEEEEEEECTTSC-EEEEEEEEEEEEC
T ss_pred             ---cEEEEEEEEEEcCCCC-EEEEEEEeeEEEC
Confidence               5789999999999987 3678887777754

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.74  E-value=1.2  Score=35.25  Aligned_cols=34  Identities=24%  Similarity=0.454  Sum_probs=24.9

Q ss_pred             CCCceeeeeeeeeeeEEEEeCCCCceEEEEEEEEEEE
Q 025461          209 TTPSGFFARGSYSAKSKVSSACSAFCSLCFPVTILII  245 (252)
Q Consensus       209 eAPSGmLARG~Y~akSkFvDDDk~i~hL~~~wsf~I~  245 (252)
                      +-|+ +|..|+|+++..+.++++++  ..+..+|.|.
T Consensus       128 ~LP~-~l~~G~Y~v~~~~~~~g~~l--~Ci~~~~slk  161 (163)
T d2ag4a1         128 ELPS-WLTTGNYRIESVLSSSGKRL--GCIKIAASLK  161 (163)
T ss_dssp             CCCT-TCSSEEEEEEEEEEETTEEE--EEEEEEEEEE
T ss_pred             cccC-ccCCceEEEEEEEeCCCCEE--EEEEEEEEEE
Confidence            5677 89999999999986666554  5556666553