Citrus Sinensis ID: 025470

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVPTS
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHHccccccccEEEEEccHHcccccccccccccEEEEEcccccccccccccccccHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccHHHHHHHHHcccccccccccccccccccccHHHcccccccHHHHccccccEEEEEcccHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccccEEEEEcccHHHHHHHcccEEEcHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHcccHccccHHHcccccccccccccccccccEEEccccEEEEEEEEccccc
Coil and Loop (DISEMBL)
mleqetnptiskstglprkrfyrarahsnplsdshfpvpispshvdyslhyphffppadqvncskkiqfadigcgfGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRvsnpgqyqniSVVRTnsmkyipnyfekgqltkmfflfpdphfkeknhrrrvisphlLDEYAYVLGVGGIIYTITDVEELGDWMRSclenhpmfealtkeeleadPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVPTS
Flexible Loop (DISEMBL)
mleqetnptiskstglprkRFYRARAHsnplsdshfpVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILalrvsnpgqyqnisvvRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEegqkvarnggqtfqavfrrivpts
Low Complexity Region (SEG)
MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVPTS
Disordered region (IsUnstruct)
***************************************ISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTK*******************************AVF*******
Disordered Region (DISOPRED)
********************FYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVP**
Disordered Region (DISEMBL)
*************TGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVPTS
Disordered Region (DISPRO)
**************GLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIV***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVPTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q8GXB7	251	tRNA (guanine-N(7)-)-meth	yes	no	0.988	0.992	0.810	1e-118
Q67V78	259	tRNA (guanine-N(7)-)-meth	yes	no	0.924	0.899	0.806	1e-112
A2YB34	259	tRNA (guanine-N(7)-)-meth	N/A	no	0.924	0.899	0.806	1e-112
B6SHG7	255	tRNA (guanine-N(7)-)-meth	N/A	no	0.944	0.933	0.773	1e-109
Q6NU94	273	tRNA (guanine-N(7)-)-meth	N/A	no	0.936	0.864	0.548	3e-79
A9UMM1	241	tRNA (guanine-N(7)-)-meth	yes	no	0.932	0.975	0.542	2e-78
Q5XJ57	241	tRNA (guanine-N(7)-)-meth	yes	no	0.932	0.975	0.542	2e-78
A8WTA7	256	tRNA (guanine-N(7)-)-meth	N/A	no	0.952	0.937	0.550	3e-78
Q28H76	273	tRNA (guanine-N(7)-)-meth	yes	no	0.920	0.849	0.557	4e-77
Q9UBP6	276	tRNA (guanine-N(7)-)-meth	yes	no	0.980	0.894	0.525	5e-77

>sp|Q8GXB7|TRMB_ARATH tRNA (guanine-N(7)-)-methyltransferase OS=Arabidopsis thaliana GN=At5g24840 PE=2 SV=1

 Score =  424 bits (1089), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 205/253 (81%), Positives = 226/253 (89%), Gaps = 4/253 (1%)

Query: 2   LEQETNPT-ISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           ++ ET  T  SKSTGLPRKRFYRARAHSNPLSDSHFP+PISP+HVDYSLH+P F    ++
Sbjct: 1   MDNETKATTFSKSTGLPRKRFYRARAHSNPLSDSHFPIPISPAHVDYSLHFPKFVEADNK 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR-VSNPGQ 119
               KK++FADIGCGFGGLLISL+TLFP+ LMIGMELRDKVTEYVKERILALR  S+ GQ
Sbjct: 61  F--IKKVEFADIGCGFGGLLISLATLFPDTLMIGMELRDKVTEYVKERILALRRTSSEGQ 118

Query: 120 YQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
           Y+NISVVRTNSMKYIPNYFEKGQL+KMFFLFPDPHFKEKNHRRRVIS HLLDEYAYVL  
Sbjct: 119 YENISVVRTNSMKYIPNYFEKGQLSKMFFLFPDPHFKEKNHRRRVISTHLLDEYAYVLRA 178

Query: 180 GGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQ 239
           GGIIYTITDVEELG+WM+SCLE HPMFE+LT+EEL +DPVV+LL SATEEGQKVARNGGQ
Sbjct: 179 GGIIYTITDVEELGEWMKSCLEKHPMFESLTQEELVSDPVVELLCSATEEGQKVARNGGQ 238

Query: 240 TFQAVFRRIVPTS 252
           TF+AVFRRI   S
Sbjct: 239 TFRAVFRRIAYVS 251

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3

>sp|Q67V78|TRMB_ORYSJ tRNA (guanine-N(7)-)-methyltransferase OS=Oryza sativa subsp. japonica GN=Os06g0236900 PE=3 SV=1

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/238 (80%), Positives = 211/238 (88%), Gaps = 5/238 (2%)

Query: 16  LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPP----ADQVNCS-KKIQFA 70
           LPRKRFYRARAHSNPLSDSHFP+PISP  VD S HYP +FP     A Q + +  +I+FA
Sbjct: 18  LPRKRFYRARAHSNPLSDSHFPIPISPDEVDLSQHYPRYFPSGEGEARQGDAAVPRIRFA 77

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           D+GCGFGGLL+ LSTLFP+ LMIGMELRDKVTEYVKERILALR SNPG+Y NISVVRTNS
Sbjct: 78  DVGCGFGGLLVGLSTLFPDTLMIGMELRDKVTEYVKERILALRASNPGKYDNISVVRTNS 137

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
           MKYIPNYF K QL+KMFFLFPDPHFKEKNHRRRVIS  LLDEYAYV+ VGGIIYTITDVE
Sbjct: 138 MKYIPNYFRKAQLSKMFFLFPDPHFKEKNHRRRVISMQLLDEYAYVMEVGGIIYTITDVE 197

Query: 191 ELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
           ELG+WMRSCLE HP+FEA+ +EE +ADPVVKLLS+ATEEGQKVARNGGQTFQA+FRRI
Sbjct: 198 ELGEWMRSCLEKHPLFEAIPEEETKADPVVKLLSTATEEGQKVARNGGQTFQAIFRRI 255

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|A2YB34|TRMB_ORYSI tRNA (guanine-N(7)-)-methyltransferase OS=Oryza sativa subsp. indica GN=OsI_22311 PE=3 SV=1

 Score =  403 bits (1036), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/238 (80%), Positives = 211/238 (88%), Gaps = 5/238 (2%)

Query: 16  LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPP----ADQVNCS-KKIQFA 70
           LPRKRFYRARAHSNPLSDSHFP+PISP  VD S HYP +FP     A Q + +  +I+FA
Sbjct: 18  LPRKRFYRARAHSNPLSDSHFPIPISPDEVDLSQHYPRYFPSGEGEARQGDAAVPRIRFA 77

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           D+GCGFGGLL+ LSTLFP+ LMIGMELRDKVTEYVKERILALR SNPG+Y NISVVRTNS
Sbjct: 78  DVGCGFGGLLVGLSTLFPDTLMIGMELRDKVTEYVKERILALRASNPGKYDNISVVRTNS 137

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
           MKYIPNYF K QL+KMFFLFPDPHFKEKNHRRRVIS  LLDEYAYV+ VGGIIYTITDVE
Sbjct: 138 MKYIPNYFRKAQLSKMFFLFPDPHFKEKNHRRRVISMQLLDEYAYVMEVGGIIYTITDVE 197

Query: 191 ELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
           ELG+WMRSCLE HP+FEA+ +EE +ADPVVKLLS+ATEEGQKVARNGGQTFQA+FRRI
Sbjct: 198 ELGEWMRSCLEKHPLFEAIPEEETKADPVVKLLSTATEEGQKVARNGGQTFQAIFRRI 255

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Oryza sativa subsp. indica (taxid: 39946)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|B6SHG7|TRMB_MAIZE tRNA (guanine-N(7)-)-methyltransferase OS=Zea mays PE=2 SV=1

 Score =  395 bits (1016), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/243 (77%), Positives = 207/243 (85%), Gaps = 5/243 (2%)

Query: 11  SKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPP-----ADQVNCSK 65
           S    LPRKRFYRARAHSNPLSDSHFPVPISP  VD S HYP +FP       ++    +
Sbjct: 8   SGGGKLPRKRFYRARAHSNPLSDSHFPVPISPEEVDLSQHYPRYFPADKGSDGEEAAAPQ 67

Query: 66  KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV 125
           +I+FAD+GCGFGGLL+ LS LFP+ LMIGMELRDKVTEYVKERILALR +NPGQY NISV
Sbjct: 68  QIRFADVGCGFGGLLVGLSPLFPDTLMIGMELRDKVTEYVKERILALRGANPGQYDNISV 127

Query: 126 VRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT 185
           VRTNSMKYIPNYF K QLTKMFFLFPDPHFKEKNHRRRVIS  LLDEYAYV+ VGGIIYT
Sbjct: 128 VRTNSMKYIPNYFRKAQLTKMFFLFPDPHFKEKNHRRRVISMQLLDEYAYVMEVGGIIYT 187

Query: 186 ITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVF 245
           ITDVEELG+WMRSCLE HP+FE + +EE++ADPV KLLS+ATEE QKVARNGGQTF A+F
Sbjct: 188 ITDVEELGEWMRSCLEKHPLFETVPEEEIKADPVFKLLSTATEESQKVARNGGQTFYAIF 247

Query: 246 RRI 248
           RRI
Sbjct: 248 RRI 250

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Zea mays (taxid: 4577)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q6NU94|TRMB_XENLA tRNA (guanine-N(7)-)-methyltransferase OS=Xenopus laevis GN=mettl1 PE=2 SV=1

 Score =  294 bits (753), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 136/248 (54%), Positives = 185/248 (74%), Gaps = 12/248 (4%)

Query: 13  STGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPP---------ADQVNC 63
           +  LP+KR+YR RAHSNP++D  F  P+ P  +D+S +YP FF P         A  +  
Sbjct: 14  AVTLPQKRYYRQRAHSNPMADHTFQYPVKPEVMDWSEYYPEFFKPLVPDCAHDDAKDLQE 73

Query: 64  SK---KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
            K   +++FAD+GCG+GGLL++LS LFP  LM+G+E+R KV++YV++RI +LR S+ GQY
Sbjct: 74  RKEQHQVEFADVGCGYGGLLVALSPLFPNTLMLGLEIRVKVSDYVQDRIKSLRASHLGQY 133

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QNI+ +R+N+MKY+PN+F+KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EY+Y L VG
Sbjct: 134 QNIACIRSNAMKYLPNFFKKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYSYALRVG 193

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           G++YTITDVEE+ +WM      HP+FE + KEEL +D +V  L ++TEEG+KV RN GQ 
Sbjct: 194 GMVYTITDVEEVHEWMVKHFTEHPLFERVEKEELVSDIIVDKLGTSTEEGKKVQRNKGQN 253

Query: 241 FQAVFRRI 248
           F AVFRRI
Sbjct: 254 FLAVFRRI 261

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|A9UMM1|TRMBB_XENTR tRNA (guanine-N(7)-)-methyltransferase B OS=Xenopus tropicalis GN=mettl1-B PE=2 SV=1

 Score =  292 bits (747), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 182/236 (77%), Gaps = 1/236 (0%)

Query: 13  STGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADI 72
           S  +P+KR+YR RAHSNP++D  F  P+ P  +D+S  YP +FP  ++     +++FADI
Sbjct: 2   SVCMPQKRYYRQRAHSNPMADHTFQYPVCPEQMDWSPLYPQYFPQQEEAG-GAQVEFADI 60

Query: 73  GCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132
           GCG+GGLL+ LS LFP+ L++G+E+R KV++YV++RI +LRV+ PG+YQNI+ +R+N+MK
Sbjct: 61  GCGYGGLLVQLSLLFPQQLILGLEIRVKVSDYVQDRIRSLRVAEPGRYQNIACLRSNAMK 120

Query: 133 YIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL 192
           Y+PN+F KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EYAY L +GG++YT TDVEE+
Sbjct: 121 YLPNFFRKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYAYTLRIGGLVYTNTDVEEV 180

Query: 193 GDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
            +W+     +HP+F  +T+E+L  D +V  L + TEEG+KV RNGG+ F AVFRR+
Sbjct: 181 HEWIVQHFSDHPLFSRVTEEQLADDIIVGHLGTCTEEGKKVQRNGGKNFLAVFRRV 236

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q5XJ57|TRMB_DANRE tRNA (guanine-N(7)-)-methyltransferase OS=Danio rerio GN=mettl1 PE=2 SV=1

 Score =  291 bits (746), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 128/236 (54%), Positives = 182/236 (77%), Gaps = 1/236 (0%)

Query: 13  STGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADI 72
           S  +P+KR+YR RAHSNP++D  F  P+ P  +D+S  YP +FP  ++     +++FADI
Sbjct: 2   SVCMPQKRYYRQRAHSNPMADHTFQYPVCPEQMDWSPLYPQYFPQQEEAG-GAQVEFADI 60

Query: 73  GCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132
           GCG+GGLL+ LS LFP+ L++G+E+R KV++YV++RI +LRV+ PG+YQNI+ +R+N+MK
Sbjct: 61  GCGYGGLLVQLSQLFPQQLILGLEIRVKVSDYVQDRIRSLRVAEPGRYQNIACLRSNAMK 120

Query: 133 YIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL 192
           Y+PN+F KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EYAY L +GG++YT TDVEE+
Sbjct: 121 YLPNFFRKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYAYTLRIGGLVYTNTDVEEV 180

Query: 193 GDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
            +W+     +HP+F  +T+E+L  D +V  L + TEEG+KV RNGG+ F AVFRR+
Sbjct: 181 HEWIVQHFGDHPLFSRVTEEQLADDIIVGHLGTCTEEGKKVQRNGGKNFLAVFRRV 236

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|A8WTA7|TRMB_CAEBR tRNA (guanine-N(7)-)-methyltransferase OS=Caenorhabditis briggsae GN=CBG02883 PE=3 SV=1

 Score =  291 bits (745), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 137/249 (55%), Positives = 182/249 (73%), Gaps = 9/249 (3%)

Query: 2   LEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQV 61
           +E +  PT     GLP+K+ YR RAHSNP SD     P++P H+D+S  Y  +       
Sbjct: 10  MELDNKPTCETVPGLPQKKHYRQRAHSNPHSDHDIEYPLTPDHMDWSKQYGDY------- 62

Query: 62  NCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN--PGQ 119
              ++++FADIGCG+GGLL+ LS +FPE LMIGME+R KV++YV E+I ALR  +   G 
Sbjct: 63  AAGRQVEFADIGCGYGGLLMRLSPMFPETLMIGMEIRVKVSDYVNEKIQALRKHHEGAGH 122

Query: 120 YQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
           Y+NI+V+R+N+MKY+PNYF KGQL+KMFFLFPDPHFK K H+ R+I+P L+ EYAYVL  
Sbjct: 123 YRNIAVLRSNAMKYMPNYFRKGQLSKMFFLFPDPHFKNKKHKWRIITPTLVSEYAYVLRE 182

Query: 180 GGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQ 239
            G+IYTITDV++L DWM   L  HP+FE L+ +E++ADPVV +L  +TEEGQKV RN G+
Sbjct: 183 QGLIYTITDVKDLHDWMVKHLNEHPLFERLSDDEMKADPVVAMLYESTEEGQKVTRNDGE 242

Query: 240 TFQAVFRRI 248
            + AVFRR+
Sbjct: 243 KWPAVFRRL 251

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q28H76|TRMBA_XENTR tRNA (guanine-N(7)-)-methyltransferase A OS=Xenopus tropicalis GN=mettl1-A PE=2 SV=2

 Score =  287 bits (735), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 136/244 (55%), Positives = 178/244 (72%), Gaps = 12/244 (4%)

Query: 17  PRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPA--DQVNCSKK-------- 66
           P+KR+YR RAHSNP++D  F  P+ P  +D+S +YP +F P   D  +   K        
Sbjct: 18  PKKRYYRQRAHSNPMADHTFQYPVKPEIMDWSEYYPDYFKPLVPDSAHDDAKDLQERKEQ 77

Query: 67  --IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS 124
             ++FADIGCG+GGLL+ LS LFP  LM+G+E+R KV++YV++RI +LR S+ GQYQNI+
Sbjct: 78  HQVEFADIGCGYGGLLVELSPLFPNTLMLGLEIRVKVSDYVQDRIKSLRASHLGQYQNIA 137

Query: 125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184
            +R+N+MKYIPN+F+KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EYAYVL +GG++Y
Sbjct: 138 CIRSNAMKYIPNFFKKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYAYVLRIGGMVY 197

Query: 185 TITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAV 244
           TITDVEE+  WM      HP+FE + KEEL  D VV  L ++TEEG+KV RN G    AV
Sbjct: 198 TITDVEEVHTWMVKHFTEHPLFERVAKEELVNDIVVGKLGTSTEEGKKVQRNKGLNLLAV 257

Query: 245 FRRI 248
           FRRI
Sbjct: 258 FRRI 261

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

>sp|Q9UBP6|TRMB_HUMAN tRNA (guanine-N(7)-)-methyltransferase OS=Homo sapiens GN=METTL1 PE=1 SV=1

 Score =  287 bits (735), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 136/259 (52%), Positives = 180/259 (69%), Gaps = 12/259 (4%)

Query: 2   LEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ- 60
           +  ET          P+KR+YR RAHSNP++D     P+ P  +D+S  YP FF P  Q 
Sbjct: 1   MAAETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQN 60

Query: 61  -----------VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERI 109
                           +++FADIGCG+GGLL+ LS LFP+ L++G+E+R KV++YV++RI
Sbjct: 61  QSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRI 120

Query: 110 LALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHL 169
            ALR +  G +QNI+ +R+N+MK++PN+F KGQLTKMFFLFPDPHFK   H+ R+ISP L
Sbjct: 121 RALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTL 180

Query: 170 LDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEE 229
           L EYAYVL VGG++YTITDV EL DWM +  E HP+FE +  E+L  DPVV  L ++TEE
Sbjct: 181 LAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEE 240

Query: 230 GQKVARNGGQTFQAVFRRI 248
           G+KV RNGG+ F A+FRRI
Sbjct: 241 GKKVLRNGGKNFPAIFRRI 259

Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
356509994	255	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.996	0.984	0.892	1e-131
255577501	252	tRNA (guanine-n(7)-)-methyltransferase,	0.996	0.996	0.884	1e-131
224115690	252	predicted protein [Populus trichocarpa]	0.988	0.988	0.871	1e-129
449442034	252	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.984	0.984	0.887	1e-128
388503020	255	unknown [Lotus japonicus]	0.996	0.984	0.868	1e-128
356518300	255	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.996	0.984	0.876	1e-128
225429820	252	PREDICTED: tRNA (guanine-N(7)-)-methyltr	0.996	0.996	0.852	1e-126
224121220	252	predicted protein [Populus trichocarpa]	0.996	0.996	0.888	1e-126
357466601	255	tRNA (guanine-N(7)-)-methyltransferase [	0.996	0.984	0.848	1e-125
147866134	260	hypothetical protein VITISV_014515 [Viti	0.968	0.938	0.860	1e-123

>gi|356509994|ref|XP_003523726.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Glycine max]

 Score =  473 bits (1217), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/251 (89%), Positives = 236/251 (94%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           M E E NPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYP  FP + Q
Sbjct: 1   MSETEVNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQLFPLSGQ 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
            + SKKIQFAD+GCGFGGLLISLSTLFPE LMIGMELRDKVTEYVKERI +LRV+NPGQY
Sbjct: 61  ADSSKKIQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERISSLRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKYIPNYFEKG L+KMFFLFPDPHFKEKNHRRRVISP LLDEYAYVL VG
Sbjct: 121 QNVSVVRTNSMKYIPNYFEKGTLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAYVLEVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTI+DVEELGDWM+SCLENHPMFEALT++ELEADPVVKLLSSATEEGQKVARN GQT
Sbjct: 181 GIIYTISDVEELGDWMKSCLENHPMFEALTEKELEADPVVKLLSSATEEGQKVARNEGQT 240

Query: 241 FQAVFRRIVPT 251
           FQAVFRRIVP+
Sbjct: 241 FQAVFRRIVPS 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577501|ref|XP_002529629.1| tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis] gi|223530914|gb|EEF32774.1| tRNA (guanine-n(7)-)-methyltransferase, putative [Ricinus communis]

 Score =  471 bits (1213), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 235/251 (93%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           MLE + NPTI+KSTGLPRKRFYRARAHSNPLSDSHFPVP SP  VDYSLHYP  FP +DQ
Sbjct: 1   MLESKANPTINKSTGLPRKRFYRARAHSNPLSDSHFPVPFSPCQVDYSLHYPQIFPMSDQ 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
           V+ SKKIQFAD+GCGFGGLLISLSTLFPE LMIGMELRDKVTEYVKER+LALRV+NPGQY
Sbjct: 61  VSSSKKIQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERVLALRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QNISVVRTNSMKYIPNYF KGQL+KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL VG
Sbjct: 121 QNISVVRTNSMKYIPNYFGKGQLSKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLEVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTITDVEELGDWM+ CLE HPMFEALT+EEL ADPVVKLLSSATEEGQKVARNGGQT
Sbjct: 181 GIIYTITDVEELGDWMKGCLEGHPMFEALTEEELGADPVVKLLSSATEEGQKVARNGGQT 240

Query: 241 FQAVFRRIVPT 251
           FQA++RRI P+
Sbjct: 241 FQAIYRRIAPS 251

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115690|ref|XP_002332118.1| predicted protein [Populus trichocarpa] gi|222874938|gb|EEF12069.1| predicted protein [Populus trichocarpa]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 217/249 (87%), Positives = 233/249 (93%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           MLE E NPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVD+SLHYP FF  + +
Sbjct: 1   MLENEANPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDFSLHYPQFFSLSCE 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
           V C K +QFADIGCGFGGLL+SLSTLFPE LMIGMELRDKV EYVKERILALR +NPGQY
Sbjct: 61  VGCIKMVQFADIGCGFGGLLVSLSTLFPETLMIGMELRDKVAEYVKERILALRTTNPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKY+PNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL VG
Sbjct: 121 QNVSVVRTNSMKYLPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLEVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTITDVEELG+WM++CL+NHPMFEALT+EEL+ADP VKLL +ATEEGQKVARNGGQT
Sbjct: 181 GIIYTITDVEELGEWMKTCLDNHPMFEALTEEELQADPAVKLLCTATEEGQKVARNGGQT 240

Query: 241 FQAVFRRIV 249
           FQAV+RRI 
Sbjct: 241 FQAVYRRIA 249

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442034|ref|XP_004138787.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Cucumis sativus] gi|449499318|ref|XP_004160784.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Cucumis sativus]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/248 (88%), Positives = 231/248 (93%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           MLE E NPTISKSTGLPRKRFYRARAHSNPLSDSHFP+PISPS VDYSLHYP  FP  DQ
Sbjct: 1   MLENEANPTISKSTGLPRKRFYRARAHSNPLSDSHFPIPISPSEVDYSLHYPQLFPSNDQ 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
            + +KKI+FADIGCGFGGLLISLSTLFPE LMIGMELRDKVTEYVKERILALRV+NPGQY
Sbjct: 61  RDKNKKIEFADIGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERILALRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QNISV RTNSMKYIPNYFEK QL+KMFFLFPDPHFKEKNHRRRVISP+LLDEYAY L VG
Sbjct: 121 QNISVDRTNSMKYIPNYFEKAQLSKMFFLFPDPHFKEKNHRRRVISPYLLDEYAYALRVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTITDVEELG+WM++CLENHP+FEALT EELEADP VKLLSSATEEGQKVARN GQT
Sbjct: 181 GIIYTITDVEELGEWMKTCLENHPLFEALTSEELEADPAVKLLSSATEEGQKVARNEGQT 240

Query: 241 FQAVFRRI 248
           FQAVFRRI
Sbjct: 241 FQAVFRRI 248

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503020|gb|AFK39576.1| unknown [Lotus japonicus]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/251 (86%), Positives = 234/251 (93%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           M E E NPT S+STGLPRKRFYRARAHSNPLSDSHFPVPISP HVDYSLHYP  FP +D+
Sbjct: 1   MSETEINPTFSESTGLPRKRFYRARAHSNPLSDSHFPVPISPRHVDYSLHYPQLFPSSDR 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
            + S+K+QFADIGCGFGGLLISL+TLFPE LMIGMELRDKV+EYVKERIL+LRV+NPGQY
Sbjct: 61  ADSSRKVQFADIGCGFGGLLISLATLFPETLMIGMELRDKVSEYVKERILSLRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKYIPNYFEKGQL+KMFFLFPDPHFKEKNHRRRVISP LLDEYAY L VG
Sbjct: 121 QNVSVVRTNSMKYIPNYFEKGQLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAYTLEVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GII TITDVEELGDWM+SCLENHPMFE LT++ELEADPVV LLSSATEEGQKVARNGGQT
Sbjct: 181 GIICTITDVEELGDWMKSCLENHPMFEPLTEKELEADPVVMLLSSATEEGQKVARNGGQT 240

Query: 241 FQAVFRRIVPT 251
           FQAVFRRIVP+
Sbjct: 241 FQAVFRRIVPS 251

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518300|ref|XP_003527817.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Glycine max]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/251 (87%), Positives = 232/251 (92%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           M + E NPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYP   P + Q
Sbjct: 1   MSKTEVNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQLLPSSGQ 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
            +  KKIQFAD+GCGFGGLLISLSTLFPE LMIGMELRDKVTEYVKERIL+LRV+NPGQY
Sbjct: 61  ADTFKKIQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERILSLRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKYIPNYFEKG L+KMFFLFPDPHFKEKNHRRRVISP LLDEYAYVL VG
Sbjct: 121 QNVSVVRTNSMKYIPNYFEKGTLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAYVLEVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTITDVEELG WM+SCLENH MFEALT +ELEAD VVKLLSSATEEGQKVARNGGQT
Sbjct: 181 GIIYTITDVEELGYWMKSCLENHRMFEALTDKELEADAVVKLLSSATEEGQKVARNGGQT 240

Query: 241 FQAVFRRIVPT 251
           FQA+FRRIVP+
Sbjct: 241 FQAIFRRIVPS 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225429820|ref|XP_002283017.1| PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Vitis vinifera]

 Score =  457 bits (1176), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 214/251 (85%), Positives = 232/251 (92%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           MLE+E +  ISKST LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYS+H+P  F  +D+
Sbjct: 1   MLEKEGHSKISKSTHLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSVHFPQLFSSSDE 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
              SKKI+FAD+GCGFGGLLISLSTLFPE LMIGME+RDKVTEYVKERILALRV+NPGQY
Sbjct: 61  GGDSKKIEFADVGCGFGGLLISLSTLFPETLMIGMEIRDKVTEYVKERILALRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKYIPNYF KGQL+KMFFLFPDPHFKEKNHRRRVIS HLLDEYAYVLG+G
Sbjct: 121 QNVSVVRTNSMKYIPNYFGKGQLSKMFFLFPDPHFKEKNHRRRVISTHLLDEYAYVLGIG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTITDVEELGDWM+ CLE HPMFEA+T+ ELE DPVVKLLSSATEEGQKVARNGGQT
Sbjct: 181 GIIYTITDVEELGDWMKDCLEGHPMFEAITEAELEGDPVVKLLSSATEEGQKVARNGGQT 240

Query: 241 FQAVFRRIVPT 251
           FQAV+RRI P+
Sbjct: 241 FQAVYRRIAPS 251

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121220|ref|XP_002330773.1| predicted protein [Populus trichocarpa] gi|222872575|gb|EEF09706.1| predicted protein [Populus trichocarpa]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 223/251 (88%), Positives = 236/251 (94%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           MLE E NPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYP FF  + +
Sbjct: 1   MLENEANPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPQFFSSSGE 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
           V   KK+QFAD+GCGFGGLLISLSTLFPE LMIGMELRDKVTEYVKERILALR +NPGQY
Sbjct: 61  VGSIKKVQFADVGCGFGGLLISLSTLFPETLMIGMELRDKVTEYVKERILALRTTNPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL VG
Sbjct: 121 QNVSVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLEVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIY+ITDVEELGDWM++CLENHPMFEALT+EELEADP VKLL +ATEEGQKVARNGGQT
Sbjct: 181 GIIYSITDVEELGDWMKTCLENHPMFEALTEEELEADPAVKLLRTATEEGQKVARNGGQT 240

Query: 241 FQAVFRRIVPT 251
           FQAV+RRI P+
Sbjct: 241 FQAVYRRIAPS 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466601|ref|XP_003603585.1| tRNA (guanine-N(7)-)-methyltransferase [Medicago truncatula] gi|355492633|gb|AES73836.1| tRNA (guanine-N(7)-)-methyltransferase [Medicago truncatula] gi|388511605|gb|AFK43864.1| unknown [Medicago truncatula]

 Score =  452 bits (1162), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 213/251 (84%), Positives = 231/251 (92%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           M E   N T SKSTGLPRKRFYRARAHSNPLSDSHFPVP+SPSHVDYSLHYP FFP +D+
Sbjct: 1   MPETGGNSTFSKSTGLPRKRFYRARAHSNPLSDSHFPVPLSPSHVDYSLHYPQFFPSSDK 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
            +  KKI+FADIGCGFGGLLISLSTLFPE LMIGMELRDKV+EYVKERIL+LRV+NPGQY
Sbjct: 61  ADSCKKIKFADIGCGFGGLLISLSTLFPETLMIGMELRDKVSEYVKERILSLRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKYIPN+FEK QL+KMFFLFPDPHFKEKNHRRRVISP LLDEYA+VL VG
Sbjct: 121 QNVSVVRTNSMKYIPNHFEKAQLSKMFFLFPDPHFKEKNHRRRVISPFLLDEYAFVLEVG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTITDVEELGDWM+SCLENHP+FE LT++ELEADP VKLLSSATEEGQKVARN GQT
Sbjct: 181 GIIYTITDVEELGDWMKSCLENHPLFEPLTEKELEADPAVKLLSSATEEGQKVARNEGQT 240

Query: 241 FQAVFRRIVPT 251
           FQAV+RRI  +
Sbjct: 241 FQAVYRRIAAS 251

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147866134|emb|CAN79838.1| hypothetical protein VITISV_014515 [Vitis vinifera]

 Score =  447 bits (1151), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 210/244 (86%), Positives = 226/244 (92%)

Query: 1   MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
           MLE+E +  ISKST LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYS+H+P  F  +D+
Sbjct: 1   MLEKEGHSKISKSTHLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSVHFPQLFSSSDE 60

Query: 61  VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY 120
              SKKI+FAD+GCGFGGLLISLSTLFPE LMIGME+RDKVTEYVKERILALRV+NPGQY
Sbjct: 61  GGDSKKIEFADVGCGFGGLLISLSTLFPETLMIGMEIRDKVTEYVKERILALRVANPGQY 120

Query: 121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG 180
           QN+SVVRTNSMKYIPNYF KGQL+KMFFLFPDPHFKEKNHRRRVIS HLLDEYAYVLG+G
Sbjct: 121 QNVSVVRTNSMKYIPNYFGKGQLSKMFFLFPDPHFKEKNHRRRVISTHLLDEYAYVLGIG 180

Query: 181 GIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQT 240
           GIIYTITDVEELGDWM+ CLE HPMFEA+T+ ELE DPVVKLLSSATEEGQKVARNGGQT
Sbjct: 181 GIIYTITDVEELGDWMKDCLEGHPMFEAITEAELEGDPVVKLLSSATEEGQKVARNGGQT 240

Query: 241 FQAV 244
           FQAV
Sbjct: 241 FQAV 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2149443	251	AT5G24840 [Arabidopsis thalian	0.988	0.992	0.818	8.1e-108
UNIPROTKB|A9UMM1	241	mettl1-B "tRNA (guanine-N(7)-)	0.932	0.975	0.542	4.1e-72
ZFIN|ZDB-GENE-041010-24	241	mettl1 "methyltransferase like	0.932	0.975	0.542	6.7e-72
UNIPROTKB|Q6NU94	273	mettl1 "tRNA (guanine-N(7)-)-m	0.924	0.853	0.551	1.4e-71
WB|WBGene00012205	256	W02B12.10 [Caenorhabditis eleg	0.952	0.937	0.542	9.9e-71
UNIPROTKB|Q23126	256	W02B12.10 "tRNA (guanine-N(7)-	0.952	0.937	0.542	9.9e-71
UNIPROTKB|Q2YDF1	277	METTL1 "tRNA (guanine-N(7)-)-m	0.984	0.895	0.530	2.1e-70
UNIPROTKB|Q9UBP6	276	METTL1 "tRNA (guanine-N(7)-)-m	0.968	0.884	0.539	2.6e-70
MGI|MGI:1339986	268	Mettl1 "methyltransferase like	0.920	0.865	0.545	3.3e-70
UNIPROTKB|Q28H76	273	mettl1-A "tRNA (guanine-N(7)-)	0.920	0.849	0.557	5.5e-70

TAIR|locus:2149443 AT5G24840 [Arabidopsis thaliana (taxid:3702)]

 Score = 1066 (380.3 bits), Expect = 8.1e-108, P = 8.1e-108
 Identities = 207/253 (81%), Positives = 226/253 (89%)

Query:     2 LEQETNPT-ISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
             ++ ET  T  SKSTGLPRKRFYRARAHSNPLSDSHFP+PISP+HVDYSLH+P F   AD 
Sbjct:     1 MDNETKATTFSKSTGLPRKRFYRARAHSNPLSDSHFPIPISPAHVDYSLHFPKFVE-ADN 59

Query:    61 VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR-VSNPGQ 119
                 KK++FADIGCGFGGLLISL+TLFP+ LMIGMELRDKVTEYVKERILALR  S+ GQ
Sbjct:    60 -KFIKKVEFADIGCGFGGLLISLATLFPDTLMIGMELRDKVTEYVKERILALRRTSSEGQ 118

Query:   120 YQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
             Y+NISVVRTNSMKYIPNYFEKGQL+KMFFLFPDPHFKEKNHRRRVIS HLLDEYAYVL  
Sbjct:   119 YENISVVRTNSMKYIPNYFEKGQLSKMFFLFPDPHFKEKNHRRRVISTHLLDEYAYVLRA 178

Query:   180 GGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQ 239
             GGIIYTITDVEELG+WM+SCLE HPMFE+LT+EEL +DPVV+LL SATEEGQKVARNGGQ
Sbjct:   179 GGIIYTITDVEELGEWMKSCLEKHPMFESLTQEELVSDPVVELLCSATEEGQKVARNGGQ 238

Query:   240 TFQAVFRRIVPTS 252
             TF+AVFRRI   S
Sbjct:   239 TFRAVFRRIAYVS 251

GO:0005634 "nucleus" evidence=ISM

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0006626 "protein targeting to mitochondrion" evidence=RCA

GO:0009165 "nucleotide biosynthetic process" evidence=RCA

UNIPROTKB|A9UMM1 mettl1-B "tRNA (guanine-N(7)-)-methyltransferase B" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 729 (261.7 bits), Expect = 4.1e-72, P = 4.1e-72
 Identities = 128/236 (54%), Positives = 182/236 (77%)

Query:    13 STGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADI 72
             S  +P+KR+YR RAHSNP++D  F  P+ P  +D+S  YP +FP  ++     +++FADI
Sbjct:     2 SVCMPQKRYYRQRAHSNPMADHTFQYPVCPEQMDWSPLYPQYFPQQEEAG-GAQVEFADI 60

Query:    73 GCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132
             GCG+GGLL+ LS LFP+ L++G+E+R KV++YV++RI +LRV+ PG+YQNI+ +R+N+MK
Sbjct:    61 GCGYGGLLVQLSLLFPQQLILGLEIRVKVSDYVQDRIRSLRVAEPGRYQNIACLRSNAMK 120

Query:   133 YIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL 192
             Y+PN+F KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EYAY L +GG++YT TDVEE+
Sbjct:   121 YLPNFFRKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYAYTLRIGGLVYTNTDVEEV 180

Query:   193 GDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
              +W+     +HP+F  +T+E+L  D +V  L + TEEG+KV RNGG+ F AVFRR+
Sbjct:   181 HEWIVQHFSDHPLFSRVTEEQLADDIIVGHLGTCTEEGKKVQRNGGKNFLAVFRRV 236

GO:0005634 "nucleus" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

ZFIN|ZDB-GENE-041010-24 mettl1 "methyltransferase like 1" [Danio rerio (taxid:7955)]

 Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
 Identities = 128/236 (54%), Positives = 182/236 (77%)

Query:    13 STGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADI 72
             S  +P+KR+YR RAHSNP++D  F  P+ P  +D+S  YP +FP  ++     +++FADI
Sbjct:     2 SVCMPQKRYYRQRAHSNPMADHTFQYPVCPEQMDWSPLYPQYFPQQEEAG-GAQVEFADI 60

Query:    73 GCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK 132
             GCG+GGLL+ LS LFP+ L++G+E+R KV++YV++RI +LRV+ PG+YQNI+ +R+N+MK
Sbjct:    61 GCGYGGLLVQLSQLFPQQLILGLEIRVKVSDYVQDRIRSLRVAEPGRYQNIACLRSNAMK 120

Query:   133 YIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL 192
             Y+PN+F KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EYAY L +GG++YT TDVEE+
Sbjct:   121 YLPNFFRKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYAYTLRIGGLVYTNTDVEEV 180

Query:   193 GDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
              +W+     +HP+F  +T+E+L  D +V  L + TEEG+KV RNGG+ F AVFRR+
Sbjct:   181 HEWIVQHFGDHPLFSRVTEEQLADDIIVGHLGTCTEEGKKVQRNGGKNFLAVFRRV 236

GO:0006400 "tRNA modification" evidence=IEA;ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA;ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0032259 "methylation" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q6NU94 mettl1 "tRNA (guanine-N(7)-)-methyltransferase" [Xenopus laevis (taxid:8355)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 135/245 (55%), Positives = 184/245 (75%)

Query:    16 LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPA-------DQVNCSKK-- 66
             LP+KR+YR RAHSNP++D  F  P+ P  +D+S +YP FF P        D  +  ++  
Sbjct:    17 LPQKRYYRQRAHSNPMADHTFQYPVKPEVMDWSEYYPEFFKPLVPDCAHDDAKDLQERKE 76

Query:    67 ---IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI 123
                ++FAD+GCG+GGLL++LS LFP  LM+G+E+R KV++YV++RI +LR S+ GQYQNI
Sbjct:    77 QHQVEFADVGCGYGGLLVALSPLFPNTLMLGLEIRVKVSDYVQDRIKSLRASHLGQYQNI 136

Query:   124 SVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII 183
             + +R+N+MKY+PN+F+KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EY+Y L VGG++
Sbjct:   137 ACIRSNAMKYLPNFFKKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYSYALRVGGMV 196

Query:   184 YTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQA 243
             YTITDVEE+ +WM      HP+FE + KEEL +D +V  L ++TEEG+KV RN GQ F A
Sbjct:   197 YTITDVEEVHEWMVKHFTEHPLFERVEKEELVSDIIVDKLGTSTEEGKKVQRNKGQNFLA 256

Query:   244 VFRRI 248
             VFRRI
Sbjct:   257 VFRRI 261

GO:0005634 "nucleus" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

WB|WBGene00012205 W02B12.10 [Caenorhabditis elegans (taxid:6239)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 135/249 (54%), Positives = 183/249 (73%)

Query:     2 LEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQV 61
             +E +  PT     GLP+K+ YR RAHSNP SD     P++P+H+D++ +Y       D  
Sbjct:    10 MELDHKPTCETVPGLPQKKHYRQRAHSNPHSDHDIEYPLTPNHMDWTKYY------GDYT 63

Query:    62 NCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV--SNPGQ 119
                +++ FADIGCG+GGLL+ LS  +P+ LMIGME+R KV++YV E+I ALR   +  G 
Sbjct:    64 K-GRQVDFADIGCGYGGLLMRLSPKYPDNLMIGMEIRVKVSDYVNEKIQALRKHHAEAGH 122

Query:   120 YQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
             Y+N++V+R+N+MKY+PNYF KGQL+KMFFLFPDPHFK K H+ R+I+P LL EYAYVL  
Sbjct:   123 YRNVAVLRSNAMKYMPNYFHKGQLSKMFFLFPDPHFKNKKHKWRIITPTLLSEYAYVLRE 182

Query:   180 GGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQ 239
             GGIIYTITDV++L +WM   L  HP+FE LT+EE++ DP+V++L  +TEEGQKV RN G 
Sbjct:   183 GGIIYTITDVKDLHEWMVKHLSEHPLFERLTEEEMKKDPIVEMLFESTEEGQKVTRNDGG 242

Query:   240 TFQAVFRRI 248
              + A+FRR+
Sbjct:   243 KWPAIFRRL 251

GO:0006400 "tRNA modification" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

UNIPROTKB|Q23126 W02B12.10 "tRNA (guanine-N(7)-)-methyltransferase" [Caenorhabditis elegans (taxid:6239)]

 Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
 Identities = 135/249 (54%), Positives = 183/249 (73%)

Query:     2 LEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQV 61
             +E +  PT     GLP+K+ YR RAHSNP SD     P++P+H+D++ +Y       D  
Sbjct:    10 MELDHKPTCETVPGLPQKKHYRQRAHSNPHSDHDIEYPLTPNHMDWTKYY------GDYT 63

Query:    62 NCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV--SNPGQ 119
                +++ FADIGCG+GGLL+ LS  +P+ LMIGME+R KV++YV E+I ALR   +  G 
Sbjct:    64 K-GRQVDFADIGCGYGGLLMRLSPKYPDNLMIGMEIRVKVSDYVNEKIQALRKHHAEAGH 122

Query:   120 YQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
             Y+N++V+R+N+MKY+PNYF KGQL+KMFFLFPDPHFK K H+ R+I+P LL EYAYVL  
Sbjct:   123 YRNVAVLRSNAMKYMPNYFHKGQLSKMFFLFPDPHFKNKKHKWRIITPTLLSEYAYVLRE 182

Query:   180 GGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQ 239
             GGIIYTITDV++L +WM   L  HP+FE LT+EE++ DP+V++L  +TEEGQKV RN G 
Sbjct:   183 GGIIYTITDVKDLHEWMVKHLSEHPLFERLTEEEMKKDPIVEMLFESTEEGQKVTRNDGG 242

Query:   240 TFQAVFRRI 248
              + A+FRR+
Sbjct:   243 KWPAIFRRL 251

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006400 "tRNA modification" evidence=ISS

UNIPROTKB|Q2YDF1 METTL1 "tRNA (guanine-N(7)-)-methyltransferase" [Bos taurus (taxid:9913)]

 Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
 Identities = 138/260 (53%), Positives = 181/260 (69%)

Query:     1 MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ 60
             M   ET          P+KR+YR RAHSNP++D     P+ P  +D+S  YP FF P  Q
Sbjct:     1 MAGTETGDAAGTEAPQPQKRYYRQRAHSNPMADHTLRYPVKPEDMDWSELYPEFFAPLPQ 60

Query:    61 VNC-----SKK-------IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKER 108
                      KK       ++FADIGCG+GGLL+ LS LFP+ L++G+E+R KV++YV++R
Sbjct:    61 NQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDR 120

Query:   109 ILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPH 168
             I ALR +  G +QNI+ +R+N+MK++PN+F KGQLTKMFFLFPDPHFK   H+ R+ISP 
Sbjct:   121 IRALRAAPGGGFQNIACLRSNAMKHLPNFFHKGQLTKMFFLFPDPHFKRTKHKWRIISPT 180

Query:   169 LLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATE 228
             LL EYAYVL VGG++YTITDV EL +WM +  E HP+FE +  EEL  DP+V  L ++TE
Sbjct:   181 LLAEYAYVLRVGGLVYTITDVLELHEWMCTHFEGHPLFERVPLEELSEDPIVGHLGTSTE 240

Query:   229 EGQKVARNGGQTFQAVFRRI 248
             EG+KV RNGG+ F A+FRRI
Sbjct:   241 EGKKVLRNGGKNFPAIFRRI 260

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

UNIPROTKB|Q9UBP6 METTL1 "tRNA (guanine-N(7)-)-methyltransferase" [Homo sapiens (taxid:9606)]

 Score = 712 (255.7 bits), Expect = 2.6e-70, P = 2.6e-70
 Identities = 138/256 (53%), Positives = 180/256 (70%)

Query:     5 ETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNC- 63
             ET          P+KR+YR RAHSNP++D     P+ P  +D+S  YP FF P  Q    
Sbjct:     4 ETRNVAGAEAPPPQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLTQNQSH 63

Query:    64 ----SKK-------IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL 112
                  KK       ++FADIGCG+GGLL+ LS LFP+ L++G+E+R KV++YV++RI AL
Sbjct:    64 DDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRAL 123

Query:   113 RVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDE 172
             R +  G +QNI+ +R+N+MK++PN+F KGQLTKMFFLFPDPHFK   H+ R+ISP LL E
Sbjct:   124 RAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAE 183

Query:   173 YAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQK 232
             YAYVL VGG++YTITDV EL DWM +  E HP+FE +  E+L  DPVV  L ++TEEG+K
Sbjct:   184 YAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKK 243

Query:   233 VARNGGQTFQAVFRRI 248
             V RNGG+ F A+FRRI
Sbjct:   244 VLRNGGKNFPAIFRRI 259

GO:0000049 "tRNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006400 "tRNA modification" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=IDA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

MGI|MGI:1339986 Mettl1 "methyltransferase like 1" [Mus musculus (taxid:10090)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 133/244 (54%), Positives = 179/244 (73%)

Query:    17 PRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQ------------VNCS 64
             P+KR+YR RAHSNP++D     P+ P  +D+S  YP FF P  Q             +  
Sbjct:    10 PQKRYYRQRAHSNPMADHTLRYPVKPEEMDWSELYPEFFAPLIQNKSHDDPKDEKEKHSG 69

Query:    65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS 124
              +++FADIGCG+GGLL++LS LFP+ L++G+E+R KV++YV++RI ALR +  G +QNI+
Sbjct:    70 AQVEFADIGCGYGGLLVALSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPGGGFQNIA 129

Query:   125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184
              +R+N+MK++PN+F KGQL KMFFLFPDPHFK   H+ R+ISP LL EYAYVL VGG++Y
Sbjct:   130 CLRSNAMKHLPNFFRKGQLAKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVY 189

Query:   185 TITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAV 244
             T+TDV EL +WM +  E HP+FE +  EEL  DP+V+ L S+TEEG+KV RNGG+ F AV
Sbjct:   190 TVTDVPELHEWMCTHFEEHPLFERVPLEELSEDPIVEHLGSSTEEGKKVLRNGGKNFPAV 249

Query:   245 FRRI 248
             FRRI
Sbjct:   250 FRRI 253

GO:0000049 "tRNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006400 "tRNA modification" evidence=ISO

GO:0008033 "tRNA processing" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISO

UNIPROTKB|Q28H76 mettl1-A "tRNA (guanine-N(7)-)-methyltransferase A" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
 Identities = 136/244 (55%), Positives = 178/244 (72%)

Query:    17 PRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPA--DQVNCSKK-------- 66
             P+KR+YR RAHSNP++D  F  P+ P  +D+S +YP +F P   D  +   K        
Sbjct:    18 PKKRYYRQRAHSNPMADHTFQYPVKPEIMDWSEYYPDYFKPLVPDSAHDDAKDLQERKEQ 77

Query:    67 --IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS 124
               ++FADIGCG+GGLL+ LS LFP  LM+G+E+R KV++YV++RI +LR S+ GQYQNI+
Sbjct:    78 HQVEFADIGCGYGGLLVELSPLFPNTLMLGLEIRVKVSDYVQDRIKSLRASHLGQYQNIA 137

Query:   125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY 184
              +R+N+MKYIPN+F+KGQL+KMFFLFPDPHFK+  H+ R+ISP LL EYAYVL +GG++Y
Sbjct:   138 CIRSNAMKYIPNFFKKGQLSKMFFLFPDPHFKKTKHKWRIISPTLLAEYAYVLRIGGMVY 197

Query:   185 TITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAV 244
             TITDVEE+  WM      HP+FE + KEEL  D VV  L ++TEEG+KV RN G    AV
Sbjct:   198 TITDVEEVHTWMVKHFTEHPLFERVAKEELVNDIVVGKLGTSTEEGKKVQRNKGLNLLAV 257

Query:   245 FRRI 248
             FRRI
Sbjct:   258 FRRI 261

GO:0005634 "nucleus" evidence=ISS

GO:0006400 "tRNA modification" evidence=ISS

GO:0008176 "tRNA (guanine-N7-)-methyltransferase activity" evidence=ISS

GO:0036265 "RNA (guanine-N7)-methylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6NU94	TRMB_XENLA	2, ., 1, ., 1, ., 3, 3	0.5483	0.9365	0.8644	N/A	no
Q8GXB7	TRMB_ARATH	2, ., 1, ., 1, ., 3, 3	0.8102	0.9880	0.9920	yes	no
A2YB34	TRMB_ORYSI	2, ., 1, ., 1, ., 3, 3	0.8067	0.9246	0.8996	N/A	no
A3LS77	TRMB_PICST	2, ., 1, ., 1, ., 3, 3	0.4980	0.9642	0.8019	yes	no
Q6CE12	TRMB_YARLI	2, ., 1, ., 1, ., 3, 3	0.5427	0.8928	0.7705	yes	no
B3MYY4	TRMB_DROAN	2, ., 1, ., 1, ., 3, 3	0.5156	0.9484	0.9299	N/A	no
Q23126	TRMB_CAEEL	2, ., 1, ., 1, ., 3, 3	0.5381	0.9523	0.9375	yes	no
P0CS80	TRMB_CRYNJ	2, ., 1, ., 1, ., 3, 3	0.5101	0.9206	0.8111	yes	no
B2AR91	TRMB_PODAN	2, ., 1, ., 1, ., 3, 3	0.4566	0.9246	0.8204	yes	no
A5DC23	TRMB_PICGU	2, ., 1, ., 1, ., 3, 3	0.5105	0.9047	0.8382	N/A	no
Q1HPU2	TRMB_BOMMO	2, ., 1, ., 1, ., 3, 3	0.5446	0.9087	0.9703	N/A	no
Q12009	TRMB_YEAST	2, ., 1, ., 1, ., 3, 3	0.5489	0.9206	0.8111	yes	no
B4JLU7	TRMB_DROGR	2, ., 1, ., 1, ., 3, 3	0.5201	0.9484	0.9676	N/A	no
Q74ZK8	TRMB_ASHGO	2, ., 1, ., 1, ., 3, 3	0.5349	0.9523	0.8510	yes	no
A7TT36	TRMB_VANPO	2, ., 1, ., 1, ., 3, 3	0.5140	0.9761	0.8601	N/A	no
Q0IEN3	TRMB_AEDAE	2, ., 1, ., 1, ., 3, 3	0.5361	0.9007	0.9265	N/A	no
A6ZXD2	TRMB_YEAS7	2, ., 1, ., 1, ., 3, 3	0.5446	0.9206	0.8111	N/A	no
B3P8V8	TRMB_DROER	2, ., 1, ., 1, ., 3, 3	0.5245	0.9285	0.9140	N/A	no
Q29I16	TRMB_DROPS	2, ., 1, ., 1, ., 3, 3	0.5161	0.9484	0.9676	yes	no
B6SHG7	TRMB_MAIZE	2, ., 1, ., 1, ., 3, 3	0.7736	0.9444	0.9333	N/A	no
Q2YDF1	TRMB_BOVIN	2, ., 1, ., 1, ., 3, 3	0.5230	0.9841	0.8953	yes	no
O77263	TRMB_DROME	2, ., 1, ., 1, ., 3, 3	0.5327	0.9285	0.9140	yes	no
B3LH81	TRMB_YEAS1	2, ., 1, ., 1, ., 3, 3	0.5489	0.9206	0.8111	N/A	no
Q551M3	TRMB_DICDI	2, ., 1, ., 1, ., 3, 3	0.5277	0.9603	0.8705	yes	no
Q7Q2P7	TRMB_ANOGA	2, ., 1, ., 1, ., 3, 3	0.4958	0.9206	0.9872	yes	no
A8NFF0	TRMB_BRUMA	2, ., 1, ., 1, ., 3, 3	0.5579	0.8968	0.8759	N/A	no
B4R338	TRMB_DROSI	2, ., 1, ., 1, ., 3, 3	0.5327	0.9285	0.9140	N/A	no
P0CS81	TRMB_CRYNB	2, ., 1, ., 1, ., 3, 3	0.5101	0.9206	0.8111	N/A	no
B4I9N7	TRMB_DROSE	2, ., 1, ., 1, ., 3, 3	0.5286	0.9285	0.9140	N/A	no
Q67V78	TRMB_ORYSJ	2, ., 1, ., 1, ., 3, 3	0.8067	0.9246	0.8996	yes	no
Q9UBP6	TRMB_HUMAN	2, ., 1, ., 1, ., 3, 3	0.5250	0.9801	0.8949	yes	no
A9UMM1	TRMBB_XENTR	2, ., 1, ., 1, ., 3, 3	0.5423	0.9325	0.9751	yes	no
Q6BX78	TRMB_DEBHA	2, ., 1, ., 1, ., 3, 3	0.5078	0.9841	0.8493	yes	no
Q28H76	TRMBA_XENTR	2, ., 1, ., 1, ., 3, 3	0.5573	0.9206	0.8498	yes	no
Q96WV1	TRMB_SCHPO	2, ., 1, ., 1, ., 3, 3	0.5100	0.9285	0.8571	yes	no
A8WTA7	TRMB_CAEBR	2, ., 1, ., 1, ., 3, 3	0.5502	0.9523	0.9375	N/A	no
Q5XJ57	TRMB_DANRE	2, ., 1, ., 1, ., 3, 3	0.5423	0.9325	0.9751	yes	no
Q6FNR1	TRMB_CANGA	2, ., 1, ., 1, ., 3, 3	0.5489	0.9206	0.8140	yes	no
B4M703	TRMB_DROVI	2, ., 1, ., 1, ., 3, 3	0.5322	0.9484	0.9676	N/A	no
B4N278	TRMB_DROWI	2, ., 1, ., 1, ., 3, 3	0.5206	0.9166	0.9203	N/A	no
B4L529	TRMB_DROMO	2, ., 1, ., 1, ., 3, 3	0.5341	0.9484	0.9637	N/A	no
Q6CY47	TRMB_KLULA	2, ., 1, ., 1, ., 3, 3	0.5296	0.9246	0.8381	yes	no
Q9Z120	TRMB_MOUSE	2, ., 1, ., 1, ., 3, 3	0.5450	0.9206	0.8656	yes	no
B4Q1B6	TRMB_DROYA	2, ., 1, ., 1, ., 3, 3	0.5333	0.9166	0.9023	N/A	no
B4H4I3	TRMB_DROPE	2, ., 1, ., 1, ., 3, 3	0.5161	0.9484	0.9676	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.998
3rd Layer	2.1.1.33	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam02390	198	pfam02390, Methyltransf_4, Putative methyltransfer	2e-59
TIGR00091	194	TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methylt	2e-44
COG0220	227	COG0220, COG0220, Predicted S-adenosylmethionine-d	3e-43
PRK00121	202	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransfe	2e-25
PRK14121	390	PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltra	8e-05
PRK01544	506	PRK01544, PRK01544, bifunctional N5-glutamine S-ad	7e-04
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	7e-04
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	9e-04

>gnl|CDD|217012 pfam02390, Methyltransf_4, Putative methyltransferase

 Score =  185 bits (473), Expect = 2e-59
 Identities = 71/181 (39%), Positives = 110/181 (60%), Gaps = 7/181 (3%)

Query: 69  FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT 128
           F +IGCG G  L++++   P+ L IG+E+R    +   ++I+ALR       QN+ ++  
Sbjct: 24  FLEIGCGMGDFLVAMAKKNPDKLFIGIEIRVPGVDKALKKIIALR-----GLQNLRILCG 78

Query: 129 NSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188
           ++MK +PN F  G L K+F  FPDP  K+++H+RR++ P  L EYA VL  GG+++  TD
Sbjct: 79  DAMKLLPNLFPDGSLQKIFINFPDPWPKKRHHKRRLLQPEFLKEYARVLKPGGVLHLATD 138

Query: 189 VEELGDWMRSCLENHPMFEALTK-EELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRR 247
           VEE  +WM   L  HP+FE + +  +L  DP+   L  +TE  QKV R GG  F+ +F +
Sbjct: 139 VEEYFEWMLEHLSEHPLFERILESTDLNEDPITD-LRISTEYEQKVQRLGGPIFELIFIK 197

Query: 248 I 248
           +
Sbjct: 198 L 198

This is a family of putative methyltransferases. The aligned region contains the GXGXG S-AdoMet binding site suggesting a putative methyltransferase activity. Length = 198

>gnl|CDD|161703 TIGR00091, TIGR00091, tRNA (guanine-N(7)-)-methyltransferase

 Score =  147 bits (374), Expect = 2e-44
 Identities = 61/203 (30%), Positives = 99/203 (48%), Gaps = 10/203 (4%)

Query: 46  DYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYV 105
           DYSL  P F   A        +   +IGCG G  LI ++   P+   +G+E+   +    
Sbjct: 1   DYSLDKPDF---ATVFGNKAPL-HLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIV--- 53

Query: 106 KERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVI 165
              + A   +N    +N+ V+  ++ + +  +F  G L+K+F  FPDP  K+++++RR+ 
Sbjct: 54  ---LAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRIT 110

Query: 166 SPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS 225
            PH L EYA VL  GG+I+  TD E L + M   L  + +FE  +K     +  +    +
Sbjct: 111 QPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSENDLFENTSKSTDLNNSPLSRPRN 170

Query: 226 ATEEGQKVARNGGQTFQAVFRRI 248
            TE  Q+  R G   F   F R+
Sbjct: 171 MTEYEQRFERLGHPVFDLCFERL 193

This predicted S-adenosylmethionine-dependent methyltransferase is found in a single copy in most Bacteria. It is also found, with a short amino-terminal extension in eukaryotes. Its function is unknown. In E. coli, this protein flanks the DNA repair protein MutY, also called micA [Protein synthesis, tRNA and rRNA base modification]. Length = 194

>gnl|CDD|223298 COG0220, COG0220, Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

 Score =  145 bits (369), Expect = 3e-43
 Identities = 55/239 (23%), Positives = 102/239 (42%), Gaps = 15/239 (6%)

Query: 12  KSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFAD 71
           +     R+R    +A  N L D+   + + P   +    +   F      N +  I   +
Sbjct: 3   RIRSFVRRRLRLTKAQKNALEDNWPRLGLDPQ--EEPGDWSALFG-----NNNAPI-VLE 54

Query: 72  IGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131
           IG G G  L+ ++   PE   +G+E+R        ++I  L +      +N+ ++  +++
Sbjct: 55  IGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGL------KNLRLLCGDAV 108

Query: 132 KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE 191
           + +      G L K++  FPDP  K+++H+RR+  P  L  YA  L  GG+++  TD EE
Sbjct: 109 EVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATDNEE 168

Query: 192 LGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVP 250
             +WM   +  HP F     E+L  +      ++   E ++  R  G     +      
Sbjct: 169 YFEWMMLEVLEHPPFLKFESEDLHYNLPPP-DNNPVTEYEQKFRRLGHPVYDLEFIKKK 226

Length = 227

>gnl|CDD|234649 PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed

 Score = 98.7 bits (247), Expect = 2e-25
 Identities = 36/137 (26%), Positives = 70/137 (51%), Gaps = 6/137 (4%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           +IG G G  L+ ++   P++  IG+E+ +       ++I    ++N      + ++  ++
Sbjct: 46  EIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN------LRLLCGDA 99

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
           ++ + + F  G L +++  FPDP  K+++H+RR++ P  L  YA  L  GG I+  TD E
Sbjct: 100 VEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWE 159

Query: 191 ELGDWMRSCLENHPMFE 207
              ++M   L     F 
Sbjct: 160 GYAEYMLEVLSAEGGFL 176

Length = 202

>gnl|CDD|237615 PRK14121, PRK14121, tRNA (guanine-N(7)-)-methyltransferase; Provisional

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 16/145 (11%)

Query: 63  CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN 122
             +KI   +IG G G  L+  +   P  L IG+E+     E V ++I  L + N      
Sbjct: 121 NQEKI-LIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN------ 173

Query: 123 ISVVRTNS---MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV 179
           + ++  ++   ++ +P+      + K+F  FP P   +K   RRVIS   L+E   VL  
Sbjct: 174 LLIINYDARLLLELLPS----NSVEKIFVHFPVPW--DKKPHRRVISEDFLNEALRVLKP 227

Query: 180 GGIIYTITDVEELGDWMRSCLENHP 204
           GG +   TD E   ++        P
Sbjct: 228 GGTLELRTDSELYFEFSLELFLKLP 252

Length = 390

>gnl|CDD|234958 PRK01544, PRK01544, bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

 Score = 40.2 bits (94), Expect = 7e-04
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 12/120 (10%)

Query: 53  HFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL 112
           + F     VN  +K+ F +IG G G   I+ + + P+ L IG+E+      Y+      L
Sbjct: 336 YLFSKEKLVNEKRKV-FLEIGFGMGEHFINQAKMNPDALFIGVEV------YLNGVANVL 388

Query: 113 RVSNPGQYQNIS--VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLL 170
           +++     QNI+  ++  N++  I N      L  ++ LFPDP  K K  ++R+ +   L
Sbjct: 389 KLAGE---QNITNFLLFPNNLDLILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERL 445

Length = 506

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 37.8 bits (88), Expect = 7e-04
 Identities = 23/118 (19%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 69  FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT 128
             D+GCG G L ++L+   P   + G+++     E  ++   AL         N+ V++ 
Sbjct: 2   VLDLGCGTGALALALA-SGPGARVTGVDISPVALELARKAAAALL------ADNVEVLKG 54

Query: 129 NSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI 186
           ++ +             +    P  H  E +  R       L+E   +L  GG++   
Sbjct: 55  DAEE--LPPEADESFDVIISDPPLHHLVE-DLAR------FLEEARRLLKPGGVLVLT 103

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 37.8 bits (88), Expect = 9e-04
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 13/120 (10%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           D G G G  L++ +   P+  ++G+EL  +        +   R++  G    + VV  ++
Sbjct: 6   DPGAGSGAFLLAAARAGPDARVVGVELDPEAA-----ALARRRLALAGLAPRVRVVVGDA 60

Query: 131 MKYIPNYFEKGQLTKMFF---LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT 187
            + +      G    +       P     + N     +    L     +L  GG++  IT
Sbjct: 61  RELLE--LPDGSFDLVLGNPPYGPRAGDPKDNRD---LYDRFLAAALRLLKPGGVLVVIT 115

This family contains methyltransferase domains. Length = 117

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	100.0
KOG3115	249	consensus Methyltransferase-like protein [General	100.0
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	100.0
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	100.0
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	100.0
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	100.0
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.96
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.77
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.7
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.7
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.68
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.65
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.65
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.65
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.65
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.63
PRK07402	196	precorrin-6B methylase; Provisional	99.63
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.63
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.62
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.61
PLN02244	340	tocopherol O-methyltransferase	99.61
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.6
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	99.6
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.59
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.59
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.59
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.57
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.57
COG4123	248	Predicted O-methyltransferase [General function pr	99.57
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.57
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.57
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.56
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.55
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.55
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.54
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.54
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.53
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.53
KOG1271	227	consensus Methyltransferases [General function pre	99.53
PRK04266	226	fibrillarin; Provisional	99.52
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.52
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.52
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.52
PRK11207	197	tellurite resistance protein TehB; Provisional	99.51
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.51
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.5
PRK06922	677	hypothetical protein; Provisional	99.49
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.49
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.49
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.49
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.48
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.47
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.46
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.46
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.46
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	99.46
PRK14968	188	putative methyltransferase; Provisional	99.45
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.45
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.45
PRK14967	223	putative methyltransferase; Provisional	99.45
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.45
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.45
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.44
PLN02490	340	MPBQ/MSBQ methyltransferase	99.44
PRK04457	262	spermidine synthase; Provisional	99.44
PRK00811	283	spermidine synthase; Provisional	99.43
PLN02336	475	phosphoethanolamine N-methyltransferase	99.42
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.42
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.42
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.42
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.42
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.41
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.41
PRK08317	241	hypothetical protein; Provisional	99.41
COG2890	280	HemK Methylase of polypeptide chain release factor	99.4
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.4
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.39
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.38
PRK12335	287	tellurite resistance protein TehB; Provisional	99.38
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.37
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.37
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.37
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.37
PLN03075	296	nicotianamine synthase; Provisional	99.36
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.36
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.36
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.35
PRK05785	226	hypothetical protein; Provisional	99.35
PLN02366	308	spermidine synthase	99.35
PRK01581	374	speE spermidine synthase; Validated	99.34
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.34
PHA03411	279	putative methyltransferase; Provisional	99.33
TIGR03438	301	probable methyltransferase. This model represents	99.33
PRK14903	431	16S rRNA methyltransferase B; Provisional	99.32
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.32
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	99.32
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.31
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	99.31
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.31
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	99.3
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.3
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.3
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.3
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.3
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.3
PRK03612	521	spermidine synthase; Provisional	99.29
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.29
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.29
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	99.29
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	99.29
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.29
KOG2361	264	consensus Predicted methyltransferase [General fun	99.28
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.28
TIGR00438	188	rrmJ cell division protein FtsJ.	99.28
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.28
KOG4300	252	consensus Predicted methyltransferase [General fun	99.28
PTZ00146	293	fibrillarin; Provisional	99.27
COG4122	219	Predicted O-methyltransferase [General function pr	99.27
PLN02336	475	phosphoethanolamine N-methyltransferase	99.26
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.25
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	99.25
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.25
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.25
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.25
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.24
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.24
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.24
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.24
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.24
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.22
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.2
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.2
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.19
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.18
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	99.18
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	99.17
PLN02476	278	O-methyltransferase	99.17
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.17
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.16
PRK06202	232	hypothetical protein; Provisional	99.16
PHA03412	241	putative methyltransferase; Provisional	99.13
KOG2904	328	consensus Predicted methyltransferase [General fun	99.13
COG1041	347	Predicted DNA modification methylase [DNA replicat	99.13
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.12
PLN02672	1082	methionine S-methyltransferase	99.1
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	99.1
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.1
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	99.1
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.07
KOG2899	288	consensus Predicted methyltransferase [General fun	99.04
PLN02823	336	spermine synthase	99.04
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.01
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.01
PLN02589	247	caffeoyl-CoA O-methyltransferase	99.0
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.97
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.96
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.96
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.95
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.94
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.92
KOG3010	261	consensus Methyltransferase [General function pred	98.88
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.88
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.87
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	98.87
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	98.85
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.85
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.83
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	98.83
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.82
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.79
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.79
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.78
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.77
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.73
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.73
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.73
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.7
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	98.64
COG2521	287	Predicted archaeal methyltransferase [General func	98.62
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.6
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.59
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.59
COG2520	341	Predicted methyltransferase [General function pred	98.57
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.57
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.56
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.55
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.54
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.54
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.5
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.49
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.49
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	98.49
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.46
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.41
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.39
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	98.38
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	98.38
PRK04148	134	hypothetical protein; Provisional	98.37
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	98.36
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	98.35
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.35
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.34
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	98.32
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	98.32
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.32
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.31
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.28
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	98.27
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	98.25
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	98.23
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	98.19
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	98.19
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	98.15
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	98.14
KOG2940	325	consensus Predicted methyltransferase [General fun	98.1
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	98.09
COG4262	508	Predicted spermidine synthase with an N-terminal m	98.03
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.03
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	98.02
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	97.99
PRK00536	262	speE spermidine synthase; Provisional	97.97
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.95
PF13679	141	Methyltransf_32: Methyltransferase domain	97.91
PRK10742	250	putative methyltransferase; Provisional	97.89
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.89
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.85
COG4076	252	Predicted RNA methylase [General function predicti	97.78
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.78
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.76
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	97.74
KOG1331	293	consensus Predicted methyltransferase [General fun	97.72
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	97.7
PF10354	166	DUF2431: Domain of unknown function (DUF2431); Int	97.66
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	97.63
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.6
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	97.56
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.52
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	97.52
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	97.5
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	97.5
KOG2730	263	consensus Methylase [General function prediction o	97.49
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.47
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.44
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.37
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.34
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	97.19
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	97.18
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	97.06
KOG1562	337	consensus Spermidine synthase [Amino acid transpor	97.03
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	97.01
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.99
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	96.99
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	96.98
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	96.89
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	96.83
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.67
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.67
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.59
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.54
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.49
COG0286	489	HsdM Type I restriction-modification system methyl	96.48
COG2384	226	Predicted SAM-dependent methyltransferase [General	96.3
PRK11524	284	putative methyltransferase; Provisional	96.26
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	96.25
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.2
PRK13699	227	putative methylase; Provisional	96.19
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.15
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	96.11
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	96.1
KOG2671	421	consensus Putative RNA methylase [Replication, rec	96.05
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.05
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	95.99
COG3129	292	Predicted SAM-dependent methyltransferase [General	95.96
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	95.9
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	95.7
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	95.68
PRK11524	284	putative methyltransferase; Provisional	95.6
KOG1501	636	consensus Arginine N-methyltransferase [General fu	95.59
COG3897	218	Predicted methyltransferase [General function pred	95.52
COG4301	321	Uncharacterized conserved protein [Function unknow	95.52
KOG2352	482	consensus Predicted spermine/spermidine synthase [	95.28
COG5459	484	Predicted rRNA methylase [Translation, ribosomal s	95.25
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	95.14
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	95.13
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.79
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.64
KOG2798	369	consensus Putative trehalase [Carbohydrate transpo	94.51
COG4798	238	Predicted methyltransferase [General function pred	94.39
PRK13699	227	putative methylase; Provisional	94.33
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	94.24
PLN02668	386	indole-3-acetate carboxyl methyltransferase	93.97
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	93.76
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	93.63
PHA01634	156	hypothetical protein	93.43
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	93.15
PF05711	248	TylF: Macrocin-O-methyltransferase (TylF); InterPr	92.87
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	92.82
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	92.6
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	92.54
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	92.12
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	92.04
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	91.94
KOG3201	201	consensus Uncharacterized conserved protein [Funct	91.92
PF03721	185	UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen	91.87
TIGR00497	501	hsdM type I restriction system adenine methylase (	91.52
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	91.27
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	90.9
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	90.78
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	90.74
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	90.67
KOG4058	199	consensus Uncharacterized conserved protein [Funct	90.6
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	90.36
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	90.35
PF05430	124	Methyltransf_30: S-adenosyl-L-methionine-dependent	90.19
COG4121	252	Uncharacterized conserved protein [Function unknow	90.01
KOG2078	495	consensus tRNA modification enzyme [RNA processing	89.82
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	89.14
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	88.94
KOG2912	419	consensus Predicted DNA methylase [Function unknow	88.91
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	88.79
PRK03659	601	glutathione-regulated potassium-efflux system prot	88.72
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	88.38
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	88.28
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	88.09
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	88.05
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	87.99
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	87.92
PLN02827	378	Alcohol dehydrogenase-like	87.06
PLN02353	473	probable UDP-glucose 6-dehydrogenase	87.01
COG0677	436	WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas	86.93
COG1568	354	Predicted methyltransferases [General function pre	86.58
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	86.36
PRK11064	415	wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro	86.34
PLN02740	381	Alcohol dehydrogenase-like	86.2
COG4627	185	Uncharacterized protein conserved in bacteria [Fun	86.08
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	86.03
PRK10669	558	putative cation:proton antiport protein; Provision	85.98
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	85.5
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	85.32
COG3510	237	CmcI Cephalosporin hydroxylase [Defense mechanisms	85.22
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	85.03
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.95
KOG1227	351	consensus Putative methyltransferase [General func	84.63
PRK10458	467	DNA cytosine methylase; Provisional	84.54
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	84.54
COG1565	370	Uncharacterized conserved protein [Function unknow	84.36
COG0863	302	DNA modification methylase [DNA replication, recom	83.21
PRK03562	621	glutathione-regulated potassium-efflux system prot	82.87
PRK09496	453	trkA potassium transporter peripheral membrane com	82.41
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	82.27
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	82.14
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	81.83
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	81.73
PF11312	315	DUF3115: Protein of unknown function (DUF3115); In	81.06
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	80.58
cd05290	307	LDH_3 A subgroup of L-lactate dehydrogenases. L-la	80.39
KOG2782	303	consensus Putative SAM dependent methyltransferase	80.37
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	80.19
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	80.06

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=100.00  E-value=6.8e-45  Score=302.24  Aligned_cols=188  Identities=28%  Similarity=0.555  Sum_probs=158.9

Q ss_pred             CCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc
Q 025470           43 SHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN  122 (252)
Q Consensus        43 ~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n  122 (252)
                      ..++|.++|+..           .+++||||||.|.+++.+|..+|+.+|+|||++...+..|.+++...      +++|
T Consensus         6 ~~~~~~~~f~~~-----------~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~------~l~N   68 (195)
T PF02390_consen    6 EPLDWQEIFGND-----------NPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKR------GLKN   68 (195)
T ss_dssp             CTTCHHHHHTSC-----------CEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHH------TTSS
T ss_pred             CccCHHHHcCCC-----------CCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhh------cccc
Confidence            457999999965           67999999999999999999999999999999999999998888765      8999


Q ss_pred             EEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          123 ISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       123 v~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      +.++++||...+...++++++|.|+++|||||+|++|+|||++++.|++.++++|+|||.|+++||+++|+++|.+.+..
T Consensus        69 v~~~~~da~~~l~~~~~~~~v~~i~i~FPDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~~~y~~~~~~~~~~  148 (195)
T PF02390_consen   69 VRFLRGDARELLRRLFPPGSVDRIYINFPDPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDVEEYAEWMLEQFEE  148 (195)
T ss_dssp             EEEEES-CTTHHHHHSTTTSEEEEEEES-----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-HHHHHHHHHHHHH
T ss_pred             eEEEEccHHHHHhhcccCCchheEEEeCCCCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            99999999987888888999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             -CCCcccccc-cccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025470          203 -HPMFEALTK-EELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI  248 (252)
Q Consensus       203 -~~~~~~~~~-~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~  248 (252)
                       ++.|+.... ..+...|..+ ..+.|+||+++++.|+.||+++|+|+
T Consensus       149 ~~~~f~~~~~~~~~~~~~~~~-~~~~T~yE~k~~~~G~~i~~~~f~k~  195 (195)
T PF02390_consen  149 SHPGFENIEESDDLHESPFDD-DYIPTKYERKWLAEGKPIYRLIFKKV  195 (195)
T ss_dssp             HSTTEEEE-TESSGGCSCCCT-TCCSSHHHHHHHHTTSS-EEEEEEE-
T ss_pred             cCcCeEEcccCcccccCCCCC-CCCCCHHHHHHHHCCCCCEEEEEEEC
Confidence             688887742 2333334222 47899999999999999999999985

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=100.00  E-value=1.8e-45  Score=297.47  Aligned_cols=247  Identities=62%  Similarity=1.060  Sum_probs=227.1

Q ss_pred             CCccCCCCCcccCcCCCCcccccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHH
Q 025470            1 MLEQETNPTISKSTGLPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLL   80 (252)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~   80 (252)
                      |-..+-+...+++..+|+|||||+|+|+||++|+++.||..|+.+||+..|+......     ....-+.|||||.|.++
T Consensus         1 ~~aet~~~~~~e~~~~pqKr~YRQRAHsNP~sDh~l~yPvsP~~mDWS~~yp~f~~~~-----~~kvefaDIGCGyGGLl   75 (249)
T KOG3115|consen    1 MEAETKNVAGSESAGLPQKRYYRQRAHSNPLSDHTLEYPVSPQEMDWSKYYPDFRRAL-----NKKVEFADIGCGYGGLL   75 (249)
T ss_pred             CchhhccccccccCCCcHHHHHHHHhhcCCCccCcccCCCChHhCcHHHhhhhhhhhc-----cccceEEeeccCccchh
Confidence            3345566778888999999999999999999999999999999999999999875332     13467999999999999


Q ss_pred             HHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-CCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCcccccc
Q 025470           81 ISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-NPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKN  159 (252)
Q Consensus        81 ~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h  159 (252)
                      +.|+..+|+..++|+||....-++.++++.++|.. ....+.|+.+++.++..+++++|..+.++.+++.||||++|++.
T Consensus        76 v~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLskmff~fpdpHfk~~k  155 (249)
T KOG3115|consen   76 MKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSKMFFLFPDPHFKARK  155 (249)
T ss_pred             hhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhcccccceeecCChhHhhhh
Confidence            99999999999999999999999999999998754 34458999999999999999999999999999999999999999


Q ss_pred             ccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCCC
Q 025470          160 HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQ  239 (252)
Q Consensus       160 ~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~  239 (252)
                      ++.|+++..++.+++-+|++||.++..||+.++.+||...++++|.|+..+.++...+|....+...|++++++.++|..
T Consensus       156 hk~rii~~~l~~eyay~l~~gg~~ytitDv~elh~wm~~~~e~hplfe~lt~ee~~~d~~v~~~~~~teeg~kv~r~~g~  235 (249)
T KOG3115|consen  156 HKWRIITSTLLSEYAYVLREGGILYTITDVKELHEWMVKHLEEHPLFERLTEEEEENDPCVELLSNATEEGKKVARNGGK  235 (249)
T ss_pred             ccceeechhHHHHHHhhhhcCceEEEEeeHHHHHHHHHHHHHhCcHhhhcchhhhcCCcchhhhhhhhhhcccccccCCc
Confidence            99999999999999999999999999999999999999999999999999988888888777788999999999999999


Q ss_pred             eEEEEEEecCCCC
Q 025470          240 TFQAVFRRIVPTS  252 (252)
Q Consensus       240 i~~~~~~k~~~~~  252 (252)
                      .|..+|++...|+
T Consensus       236 ~f~a~f~r~~~~~  248 (249)
T KOG3115|consen  236 KFVAVFRRIPNPA  248 (249)
T ss_pred             eeeeeeeeccCCC
Confidence            9999999998875

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=100.00  E-value=1.3e-44  Score=305.35  Aligned_cols=218  Identities=26%  Similarity=0.409  Sum_probs=180.4

Q ss_pred             CCCCcccccccCCCCCCCCCCCCCCCCCC--CCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeE
Q 025470           15 GLPRKRFYRARAHSNPLSDSHFPVPISPS--HVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLM   92 (252)
Q Consensus        15 ~~~~~~~~~~r~~~np~~~~~~~~~~~~~--~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~   92 (252)
                      ...+++....+++.+++.+....++.++.  ..+|.++|++.          ..|++||||||.|.+++.+|+++|+.+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~----------~~pi~lEIGfG~G~~l~~~A~~nP~~nf   75 (227)
T COG0220           6 SFVRRRLRLTKAQKNALEDNWPRLGLDPQEEPGDWSALFGNN----------NAPIVLEIGFGMGEFLVEMAKKNPEKNF   75 (227)
T ss_pred             hhhhhhccccHHHHHHHHhcccccCCChhhccchHHHHhCCC----------CCcEEEEECCCCCHHHHHHHHHCCCCCE
Confidence            34455555678888888777555555554  35899999865          2579999999999999999999999999


Q ss_pred             EEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHH
Q 025470           93 IGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDE  172 (252)
Q Consensus        93 iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~  172 (252)
                      +|||++...+..|.+++.+.      +++||++++.||.+.++.+++++++|.|+++|||||+|+||+|||++++.|++.
T Consensus        76 iGiEi~~~~v~~~l~k~~~~------~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~FPDPWpKkRH~KRRl~~~~fl~~  149 (227)
T COG0220          76 LGIEIRVPGVAKALKKIKEL------GLKNLRLLCGDAVEVLDYLIPDGSLDKIYINFPDPWPKKRHHKRRLTQPEFLKL  149 (227)
T ss_pred             EEEEEehHHHHHHHHHHHHc------CCCcEEEEcCCHHHHHHhcCCCCCeeEEEEECCCCCCCccccccccCCHHHHHH
Confidence            99999999999998887664      788999999999988887777789999999999999999999999999999999


Q ss_pred             HHHhhcCCcEEEEEeCchHHHHHHHHHHhcC-CCcccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEecC
Q 025470          173 YAYVLGVGGIIYTITDVEELGDWMRSCLENH-PMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIV  249 (252)
Q Consensus       173 ~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~~  249 (252)
                      ++++|+|||.|+++||+++|+++|+.....+ +.+...+.+.+...+.. ..++.|+||+++.+.|+.||++.|+++.
T Consensus       150 ~a~~Lk~gG~l~~aTD~~~y~e~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~T~yE~k~~~~g~~i~~l~~~~~~  226 (227)
T COG0220         150 YARKLKPGGVLHFATDNEEYFEWMMLEVLEHPPFLKFESEDLHYNLPPP-DNNPVTEYEQKFRRLGHPVYDLEFIKKK  226 (227)
T ss_pred             HHHHccCCCEEEEEecCHHHHHHHHHHHHhcchhhhccccccccccccc-cCCCCcHHHHHHHhCCCceEEEEEEecC
Confidence            9999999999999999999999966666555 33444443333311211 1278899999999999999999999874

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=100.00  E-value=8.4e-38  Score=259.96  Aligned_cols=187  Identities=30%  Similarity=0.527  Sum_probs=161.5

Q ss_pred             CCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE
Q 025470           44 HVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI  123 (252)
Q Consensus        44 ~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv  123 (252)
                      +.+|.++|+..           .+++||||||+|.++..+|+++|+.+|+|||+++.+++.|.+++...      ++.|+
T Consensus         6 ~~~~~~~f~~~-----------~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~------~l~ni   68 (194)
T TIGR00091         6 KPDFATVFGNK-----------APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL------GLKNL   68 (194)
T ss_pred             CCCHHHHhCCC-----------CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh------CCCCE
Confidence            35798899843           56999999999999999999999999999999999999998877553      67899


Q ss_pred             EEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          124 SVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       124 ~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      +++++|+.+.+...++++++|.|+++|||||++++|+++|++++.++++++++|||||.|++.||+..|+++|.+.+..+
T Consensus        69 ~~i~~d~~~~~~~~~~~~~~d~v~~~~pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~~~~~~~~~~~~~~  148 (194)
T TIGR00091        69 HVLCGDANELLDKFFPDGSLSKVFLNFPDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNEPLFEDMLKVLSEN  148 (194)
T ss_pred             EEEccCHHHHHHhhCCCCceeEEEEECCCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHhC
Confidence            99999997655445667799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccc-cccCccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025470          204 PMFEALTKEE-LEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI  248 (252)
Q Consensus       204 ~~~~~~~~~~-~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~  248 (252)
                      +.|+.+.... +...|. ...+..|+||+++++.|+.||+++|+|.
T Consensus       149 ~~f~~~~~~~~~~~~~~-~~~~~~T~~E~~~~~~g~~i~~~~~~~~  193 (194)
T TIGR00091       149 DLFENTSKSTDLNNSPL-SRPRNMTEYEQRFERLGHPVFDLCFERL  193 (194)
T ss_pred             CCeEecccccccCCCcc-cccCcCCHHHHHHHHCCCCeEEEEEEEC
Confidence            8887775432 222221 2224579999999999999999999985

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=100.00  E-value=3.9e-35  Score=263.79  Aligned_cols=169  Identities=21%  Similarity=0.290  Sum_probs=149.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ++++||||||+|.+++.+|+++|+.+++|||+++.+++.|.+++..      .+++||+++++|+...+ ..++++++|.
T Consensus       123 ~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~------~gL~NV~~i~~DA~~ll-~~~~~~s~D~  195 (390)
T PRK14121        123 EKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIEL------LNLKNLLIINYDARLLL-ELLPSNSVEK  195 (390)
T ss_pred             CCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH------cCCCcEEEEECCHHHhh-hhCCCCceeE
Confidence            6799999999999999999999999999999999999999887755      37899999999997533 4688999999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS  225 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  225 (252)
                      |+++|||||+|++|  ||++++.++++++++|+|||.+++.||+.+|+++|.+.+...+.++...   ....+    ..+
T Consensus       196 I~lnFPdPW~KkrH--RRlv~~~fL~e~~RvLkpGG~l~l~TD~~~y~~~~~e~~~~~~~~~~~~---~~~~~----~~i  266 (390)
T PRK14121        196 IFVHFPVPWDKKPH--RRVISEDFLNEALRVLKPGGTLELRTDSELYFEFSLELFLKLPKAKIEI---KKNAQ----LEV  266 (390)
T ss_pred             EEEeCCCCccccch--hhccHHHHHHHHHHHcCCCcEEEEEEECHHHHHHHHHHHHhCCCceeec---ccCCC----CCC
Confidence            99999999999988  8999999999999999999999999999999999999998887664321   21121    268


Q ss_pred             CCHHHHHHHHcCCCeEEEEEEecCC
Q 025470          226 ATEEGQKVARNGGQTFQAVFRRIVP  250 (252)
Q Consensus       226 ~t~~e~~~~~~G~~i~~~~~~k~~~  250 (252)
                      .|+||++|++.|+.||+++|++...
T Consensus       267 ~TkyE~r~~~~G~~Iy~l~~~~~~~  291 (390)
T PRK14121        267 SSKYEDRWKKQNKDIYDLRIYNLEE  291 (390)
T ss_pred             CCHHHHHHHHCCCCEEEEEEEeCCC
Confidence            8999999999999999999998754

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=100.00  E-value=1.4e-34  Score=271.43  Aligned_cols=167  Identities=22%  Similarity=0.254  Sum_probs=145.1

Q ss_pred             CccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE
Q 025470           46 DYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV  125 (252)
Q Consensus        46 ~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~  125 (252)
                      +|..+|+..           .+++||||||.|.+++.+|..+|+.+|+|||++...+..|.+++..      .++.|+++
T Consensus       339 ~~eklf~~~-----------~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~------~~l~N~~~  401 (506)
T PRK01544        339 SKEKLVNEK-----------RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGE------QNITNFLL  401 (506)
T ss_pred             CHHHhCCCC-----------CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHH------cCCCeEEE
Confidence            566667643           7899999999999999999999999999999999988888776544      47899999


Q ss_pred             EeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          126 VRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       126 ~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      +..|+. .+...|+++++|.|+++|||||+|++|+|||++++.|++.++++|||||.|+++||+.+|+++|++.+.+++.
T Consensus       402 ~~~~~~-~~~~~~~~~sv~~i~i~FPDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~~~y~~~~~~~~~~~~~  480 (506)
T PRK01544        402 FPNNLD-LILNDLPNNSLDGIYILFPDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDIENYFYEAIELIQQNGN  480 (506)
T ss_pred             EcCCHH-HHHHhcCcccccEEEEECCCCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhCCC
Confidence            999986 4666789999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             cccccccccccCccccCCCCCCHHHHHH
Q 025470          206 FEALTKEELEADPVVKLLSSATEEGQKV  233 (252)
Q Consensus       206 ~~~~~~~~~~~~p~~~~~~~~t~~e~~~  233 (252)
                      |+....+.+..++.   .++.|+||+|.
T Consensus       481 f~~~~~~~~~~~~~---~~~~T~yE~k~  505 (506)
T PRK01544        481 FEIINKNDYLKPHD---NYVITKYHQKA  505 (506)
T ss_pred             eEecccccccCCCC---CCCCchhccCc
Confidence            87765443433332   37889999874

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.96  E-value=2.7e-28  Score=204.04  Aligned_cols=176  Identities=25%  Similarity=0.412  Sum_probs=148.7

Q ss_pred             CCCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc
Q 025470           41 SPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY  120 (252)
Q Consensus        41 ~~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~  120 (252)
                      .+....|..+|+..           ...|||||||+|.++..+|+..|..+++|||+|+.+++.|++++...      +.
T Consensus        27 ~~~~~~~~~~~~~~-----------~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~------~~   89 (202)
T PRK00121         27 SPAPLDWAELFGND-----------APIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE------GL   89 (202)
T ss_pred             cCCCCCHHHHcCCC-----------CCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc------CC
Confidence            35667899998863           56899999999999999999999999999999999999999877553      66


Q ss_pred             ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       121 ~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      +|+.++++|+.+.++..++++++|.|+++||+||.+..|++++.+...+++++.++|||||.|++.+++..+..++.+.+
T Consensus        90 ~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~~~~~~~~~~~~  169 (202)
T PRK00121         90 TNLRLLCGDAVEVLLDMFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDWEGYAEYMLEVL  169 (202)
T ss_pred             CCEEEEecCHHHHHHHHcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHH
Confidence            89999999983345545678899999999999999888888888899999999999999999999999999999999999


Q ss_pred             hcCCCcccccccccccCccccCCCCCCHHHHHHHHc
Q 025470          201 ENHPMFEALTKEELEADPVVKLLSSATEEGQKVARN  236 (252)
Q Consensus       201 ~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~  236 (252)
                      ...++...+..+.+..+|   ...+.|+||++|+.+
T Consensus       170 ~~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~  202 (202)
T PRK00121        170 SAEGGFLVSEAGDYVPRP---EGRPMTEYERKGLRK  202 (202)
T ss_pred             HhCcccccccchhhcccC---ccCCCcHHHHHhhcC
Confidence            998865554333333333   347999999999863

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.77  E-value=4.2e-18  Score=144.68  Aligned_cols=156  Identities=17%  Similarity=0.245  Sum_probs=108.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.+++.+++..+...++|+|+|+.|++.|++++...      +..++.|+.+||. .||  |++++||.
T Consensus        52 g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~------~~~~i~fv~~dAe-~LP--f~D~sFD~  122 (238)
T COG2226          52 GDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKK------GVQNVEFVVGDAE-NLP--FPDNSFDA  122 (238)
T ss_pred             CCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhcc------CccceEEEEechh-hCC--CCCCccCE
Confidence            56899999999999999999998899999999999999999887543      6667999999997 587  99999999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc--------hHHHHHHHH-HHhcCCCcccccccc--c
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV--------EELGDWMRS-CLENHPMFEALTKEE--L  214 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~--------~~~~~~~~~-~~~~~~~~~~~~~~~--~  214 (252)
                      |.+.|.--+...        -...|+++.|+|||||++.+..-.        .-|..+... .+...+.+..-..+.  +
T Consensus       123 vt~~fglrnv~d--------~~~aL~E~~RVlKpgG~~~vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~y  194 (238)
T COG2226         123 VTISFGLRNVTD--------IDKALKEMYRVLKPGGRLLVLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEY  194 (238)
T ss_pred             EEeeehhhcCCC--------HHHHHHHHHHhhcCCeEEEEEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHH
Confidence            998664222211        126999999999999987764311        124445555 444333332211111  1


Q ss_pred             ccCccccCCCCCCHHHHHHHHcCCC
Q 025470          215 EADPVVKLLSSATEEGQKVARNGGQ  239 (252)
Q Consensus       215 ~~~p~~~~~~~~t~~e~~~~~~G~~  239 (252)
                      ...-. ..+.....+.+....+|..
T Consensus       195 L~eSi-~~~p~~~~l~~~~~~~gf~  218 (238)
T COG2226         195 LAESI-RRFPDQEELKQMIEKAGFE  218 (238)
T ss_pred             HHHHH-HhCCCHHHHHHHHHhcCce
Confidence            11111 1123445667777788876

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.70  E-value=1.2e-16  Score=120.30  Aligned_cols=108  Identities=22%  Similarity=0.374  Sum_probs=84.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.+|+.+++|||+|+.+++.|++++...     ...+|+.++++|+ ......  ...+|.
T Consensus         2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~i~~~~~d~-~~~~~~--~~~~D~   73 (112)
T PF12847_consen    2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEE-----GLSDRITFVQGDA-EFDPDF--LEPFDL   73 (112)
T ss_dssp             TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHT-----TTTTTEEEEESCC-HGGTTT--SSCEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECcc-ccCccc--CCCCCE
Confidence            45899999999999999999889999999999999999999887443     3557999999998 222222  346999


Q ss_pred             EEEeC-CCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLF-PDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~f-pdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++.. ... +..  +.    ....+++.+.+.|+|||++++.+
T Consensus        74 v~~~~~~~~~~~~--~~----~~~~~l~~~~~~L~pgG~lvi~~  111 (112)
T PF12847_consen   74 VICSGFTLHFLLP--LD----ERRRVLERIRRLLKPGGRLVINT  111 (112)
T ss_dssp             EEECSGSGGGCCH--HH----HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCccccccc--hh----HHHHHHHHHHHhcCCCcEEEEEE
Confidence            99876 222 111  00    12358999999999999999875

...

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.70  E-value=8.9e-17  Score=137.13  Aligned_cols=105  Identities=21%  Similarity=0.362  Sum_probs=75.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..++++. |...++|+|+|+.|++.|++++...      +..||.++++|+. .++  ++++++|
T Consensus        48 g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~------~~~~i~~v~~da~-~lp--~~d~sfD  118 (233)
T PF01209_consen   48 GDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE------GLQNIEFVQGDAE-DLP--FPDNSFD  118 (233)
T ss_dssp             --EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT------T--SEEEEE-BTT-B----S-TT-EE
T ss_pred             CCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh------CCCCeeEEEcCHH-Hhc--CCCCcee
Confidence            4599999999999999999984 6789999999999999999887653      5669999999997 476  7899999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|.+.|--.....        ....++++.|+|||||++.+..
T Consensus       119 ~v~~~fglrn~~d--------~~~~l~E~~RVLkPGG~l~ile  153 (233)
T PF01209_consen  119 AVTCSFGLRNFPD--------RERALREMYRVLKPGGRLVILE  153 (233)
T ss_dssp             EEEEES-GGG-SS--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEHHhhHHhhCC--------HHHHHHHHHHHcCCCeEEEEee
Confidence            9998663111100        1259999999999999988753

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.68  E-value=6.9e-16  Score=123.07  Aligned_cols=108  Identities=27%  Similarity=0.470  Sum_probs=87.4

Q ss_pred             CceEEEEcCcccHHHHHHH-HHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLS-TLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA-~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..++ +.+|...++|+|+++.|++.|+.++...      +.+|+.|+++|+.+ ++..+. +.+|
T Consensus         4 ~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~------~~~ni~~~~~d~~~-l~~~~~-~~~D   75 (152)
T PF13847_consen    4 NKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL------GLDNIEFIQGDIED-LPQELE-EKFD   75 (152)
T ss_dssp             TSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT------TSTTEEEEESBTTC-GCGCSS-TTEE
T ss_pred             CCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc------cccccceEEeehhc-cccccC-CCee
Confidence            5689999999999999999 5578899999999999999999877664      77899999999986 653333 7999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|+...+..+...        ...+++.+.++|++||.+++....
T Consensus        76 ~I~~~~~l~~~~~--------~~~~l~~~~~~lk~~G~~i~~~~~  112 (152)
T PF13847_consen   76 IIISNGVLHHFPD--------PEKVLKNIIRLLKPGGILIISDPN  112 (152)
T ss_dssp             EEEEESTGGGTSH--------HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEEcCchhhccC--------HHHHHHHHHHHcCCCcEEEEEECC
Confidence            9998754433221        125899999999999999887655

...

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.65  E-value=2.1e-15  Score=134.19  Aligned_cols=151  Identities=16%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+.  +..++|||+++++++.|+.+....     ....++.++++|+.+ ++  +.+++||.
T Consensus       132 g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~~-----~~~~~i~~~~~dae~-l~--~~~~~FD~  201 (322)
T PLN02396        132 GLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADMD-----PVTSTIEYLCTTAEK-LA--DEGRKFDA  201 (322)
T ss_pred             CCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHhc-----CcccceeEEecCHHH-hh--hccCCCCE
Confidence            458999999999999999875  679999999999999998764321     123589999999864 54  45679999


Q ss_pred             EEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccc
Q 025470          146 MFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVV  220 (252)
Q Consensus       146 i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  220 (252)
                      |++..     +||.             .+++++.++|||||.+++.|.+.....+....+........++...+.   . 
T Consensus       202 Vi~~~vLeHv~d~~-------------~~L~~l~r~LkPGG~liist~nr~~~~~~~~i~~~eyi~~~lp~gth~---~-  264 (322)
T PLN02396        202 VLSLEVIEHVANPA-------------EFCKSLSALTIPNGATVLSTINRTMRAYASTIVGAEYILRWLPKGTHQ---W-  264 (322)
T ss_pred             EEEhhHHHhcCCHH-------------HHHHHHHHHcCCCcEEEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcC---c-
Confidence            98743     4432             699999999999999999998876544433332211111112211111   0 


Q ss_pred             cCCCCCCHHHHHHHHcCCCeEEE
Q 025470          221 KLLSSATEEGQKVARNGGQTFQA  243 (252)
Q Consensus       221 ~~~~~~t~~e~~~~~~G~~i~~~  243 (252)
                      .......+..+...+.|.++..+
T Consensus       265 ~~f~tp~eL~~lL~~aGf~i~~~  287 (322)
T PLN02396        265 SSFVTPEELSMILQRASVDVKEM  287 (322)
T ss_pred             cCCCCHHHHHHHHHHcCCeEEEE
Confidence            11234567778888888876443

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.65  E-value=1.7e-15  Score=131.53  Aligned_cols=108  Identities=17%  Similarity=0.256  Sum_probs=84.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. |..+++|+|+|++|++.|+++....   .....+|+.++++|+. .++  ++++++|
T Consensus        74 ~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~---~~~~~~~i~~~~~d~~-~lp--~~~~sfD  147 (261)
T PLN02233         74 GDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELK---AKSCYKNIEWIEGDAT-DLP--FDDCYFD  147 (261)
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhh---hhccCCCeEEEEcccc-cCC--CCCCCEe
Confidence            4589999999999999999884 5679999999999999998764321   1124568999999986 355  6788999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++++.-.+...        ...+++++.++|||||.|++..
T Consensus       148 ~V~~~~~l~~~~d--------~~~~l~ei~rvLkpGG~l~i~d  182 (261)
T PLN02233        148 AITMGYGLRNVVD--------RLKAMQEMYRVLKPGSRVSILD  182 (261)
T ss_pred             EEEEecccccCCC--------HHHHHHHHHHHcCcCcEEEEEE
Confidence            9998664332211        1269999999999999998864

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.65  E-value=1.1e-15  Score=124.50  Aligned_cols=111  Identities=15%  Similarity=0.265  Sum_probs=87.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.+++.+|+..|...++++|+++.+++.|++++...      +..++.++..|..+.    ++++.+|.
T Consensus        32 ~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n------~~~~v~~~~~d~~~~----~~~~~fD~  101 (170)
T PF05175_consen   32 GGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERN------GLENVEVVQSDLFEA----LPDGKFDL  101 (170)
T ss_dssp             TCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHT------TCTTEEEEESSTTTT----CCTTCEEE
T ss_pred             CCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhc------Ccccccccccccccc----ccccceeE
Confidence            45899999999999999999999988999999999999999988764      666799999997542    44789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++|.|--.   .......+...+++...+.|+|||.+++....
T Consensus       102 Iv~NPP~~~---~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~  142 (170)
T PF05175_consen  102 IVSNPPFHA---GGDDGLDLLRDFIEQARRYLKPGGRLFLVINS  142 (170)
T ss_dssp             EEE---SBT---TSHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred             EEEccchhc---ccccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence            999987211   11111223457999999999999999877654

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.65  E-value=6.2e-16  Score=112.29  Aligned_cols=95  Identities=22%  Similarity=0.398  Sum_probs=74.3

Q ss_pred             EEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEe
Q 025470           70 ADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFL  149 (252)
Q Consensus        70 LDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~  149 (252)
                      ||||||+|..+..+++. +..+++|+|+++++++.++++.         ...++.++.+|+. .++  ++++++|.|+.+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~---------~~~~~~~~~~d~~-~l~--~~~~sfD~v~~~   67 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRL---------KNEGVSFRQGDAE-DLP--FPDNSFDVVFSN   67 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHT---------TTSTEEEEESBTT-SSS--S-TT-EEEEEEE
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcc---------cccCchheeehHH-hCc--cccccccccccc
Confidence            89999999999999999 8889999999999999887654         2345669999987 454  789999999987


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ..--|...        ...+++++.|+|||||.++|
T Consensus        68 ~~~~~~~~--------~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   68 SVLHHLED--------PEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             SHGGGSSH--------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cceeeccC--------HHHHHHHHHHHcCcCeEEeC
Confidence            64444311        23699999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.63  E-value=6.8e-15  Score=112.36  Aligned_cols=103  Identities=17%  Similarity=0.179  Sum_probs=83.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|+..++|+|+++.+++.|++++...      +..++.++.+|+...+.  .....+|.
T Consensus        20 ~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~~~~~~~--~~~~~~D~   91 (124)
T TIGR02469        20 GDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF------GVSNIVIVEGDAPEALE--DSLPEPDR   91 (124)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh------CCCceEEEeccccccCh--hhcCCCCE
Confidence            45899999999999999999998899999999999999998877654      56789999999764332  12358999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++..+...           ...+++.+.+.|+|||.|++..
T Consensus        92 v~~~~~~~~-----------~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        92 VFIGGSGGL-----------LQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             EEECCcchh-----------HHHHHHHHHHHcCCCCEEEEEe
Confidence            998654322           1369999999999999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.63  E-value=1.4e-14  Score=120.50  Aligned_cols=118  Identities=16%  Similarity=0.190  Sum_probs=91.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..+|||+|||+|.++..+|+..|+..++|+|+++.+++.|++++...      +..|+.++.+|+.+.++. + ....|.
T Consensus        41 ~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~------~~~~v~~~~~d~~~~~~~-~-~~~~d~  112 (196)
T PRK07402         41 DSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF------GVKNVEVIEGSAPECLAQ-L-APAPDR  112 (196)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCeEEEECchHHHHhh-C-CCCCCE
Confidence            45899999999999999998888899999999999999999888664      667899999998653432 2 123466


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      +++....++            ..+++.+.++|+|||.+++.+...+......+.+...
T Consensus       113 v~~~~~~~~------------~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~~~~~~~  158 (196)
T PRK07402        113 VCIEGGRPI------------KEILQAVWQYLKPGGRLVATASSLEGLYAISEGLAQL  158 (196)
T ss_pred             EEEECCcCH------------HHHHHHHHHhcCCCeEEEEEeecHHHHHHHHHHHHhc
Confidence            766543332            3699999999999999999887665555555666543

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.63  E-value=7.5e-15  Score=121.24  Aligned_cols=116  Identities=16%  Similarity=0.147  Sum_probs=92.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|..++.+|...|+..++|+|+++.|++.|++++...      +++|+.++++|+.+ +.  . .+++|.
T Consensus        46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~------~l~~i~~~~~d~~~-~~--~-~~~fDl  115 (187)
T PRK00107         46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL------GLKNVTVVHGRAEE-FG--Q-EEKFDV  115 (187)
T ss_pred             CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc------CCCCEEEEeccHhh-CC--C-CCCccE
Confidence            45899999999999999999999999999999999999999887664      67789999999874 43  2 678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |+++.-.++            ..+++.++++|+|||.+++.. ...+...+.+.....+
T Consensus       116 V~~~~~~~~------------~~~l~~~~~~LkpGG~lv~~~-~~~~~~~l~~~~~~~~  161 (187)
T PRK00107        116 VTSRAVASL------------SDLVELCLPLLKPGGRFLALK-GRDPEEEIAELPKALG  161 (187)
T ss_pred             EEEccccCH------------HHHHHHHHHhcCCCeEEEEEe-CCChHHHHHHHHHhcC
Confidence            998642111            369999999999999999875 3345554444444444

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.62  E-value=1.4e-15  Score=127.76  Aligned_cols=122  Identities=23%  Similarity=0.346  Sum_probs=99.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||.|.++..||+.  +.+|+|+|+++++|+.|+.+..+      .++ ++.+.+..+.+...   ..++||.
T Consensus        60 g~~vLDvGCGgG~Lse~mAr~--Ga~VtgiD~se~~I~~Ak~ha~e------~gv-~i~y~~~~~edl~~---~~~~FDv  127 (243)
T COG2227          60 GLRVLDVGCGGGILSEPLARL--GASVTGIDASEKPIEVAKLHALE------SGV-NIDYRQATVEDLAS---AGGQFDV  127 (243)
T ss_pred             CCeEEEecCCccHhhHHHHHC--CCeeEEecCChHHHHHHHHhhhh------ccc-cccchhhhHHHHHh---cCCCccE
Confidence            458999999999999999999  58999999999999999876543      233 36677777765332   2379999


Q ss_pred             EEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccccccc
Q 025470          146 MFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKE  212 (252)
Q Consensus       146 i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~  212 (252)
                      |.+     +.|||-             .|++.+.+++||||.++++|.++....++...+.++..+..++..
T Consensus       128 V~cmEVlEHv~dp~-------------~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~g  186 (243)
T COG2227         128 VTCMEVLEHVPDPE-------------SFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKG  186 (243)
T ss_pred             EEEhhHHHccCCHH-------------HHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCc
Confidence            986     578876             599999999999999999999999999999988877666666543

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.61  E-value=2.1e-14  Score=118.41  Aligned_cols=117  Identities=18%  Similarity=0.184  Sum_probs=92.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.+++.+++.+|+..++|+|+++.+++.|++++...      ++.++.++.+|+...    + ++++|.
T Consensus        32 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~------~~~~i~~~~~d~~~~----~-~~~~D~  100 (187)
T PRK08287         32 AKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF------GCGNIDIIPGEAPIE----L-PGKADA  100 (187)
T ss_pred             CCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCeEEEecCchhh----c-CcCCCE
Confidence            45899999999999999999999899999999999999999887654      566899999987421    2 357999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |++......           ...+++.+.+.|+|||.+++..-..+-...+.+.+.+.+
T Consensus       101 v~~~~~~~~-----------~~~~l~~~~~~Lk~gG~lv~~~~~~~~~~~~~~~l~~~g  148 (187)
T PRK08287        101 IFIGGSGGN-----------LTAIIDWSLAHLHPGGRLVLTFILLENLHSALAHLEKCG  148 (187)
T ss_pred             EEECCCccC-----------HHHHHHHHHHhcCCCeEEEEEEecHhhHHHHHHHHHHCC
Confidence            998653221           135899999999999999886544445566667777665

>PLN02244 tocopherol O-methyltransferase

Probab=99.61  E-value=7.1e-15  Score=132.26  Aligned_cols=104  Identities=23%  Similarity=0.395  Sum_probs=84.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+ +..++|||+|+.+++.|++++...      ++ +++.++.+|+.. ++  ++++++|
T Consensus       119 ~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~------g~~~~v~~~~~D~~~-~~--~~~~~FD  188 (340)
T PLN02244        119 PKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQ------GLSDKVSFQVADALN-QP--FEDGQFD  188 (340)
T ss_pred             CCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEEcCccc-CC--CCCCCcc
Confidence            4589999999999999999987 679999999999999998776542      33 579999999863 43  6789999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+......+...        ...+++++.++|||||.|++.+
T Consensus       189 ~V~s~~~~~h~~d--------~~~~l~e~~rvLkpGG~lvi~~  223 (340)
T PLN02244        189 LVWSMESGEHMPD--------KRKFVQELARVAAPGGRIIIVT  223 (340)
T ss_pred             EEEECCchhccCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            9998654333221        1269999999999999999976

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.60  E-value=1.2e-14  Score=123.53  Aligned_cols=106  Identities=20%  Similarity=0.372  Sum_probs=85.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. |...++|+|+++.+++.|++++...      +.+++.++++|+.. ++  ++++++|
T Consensus        46 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~-~~--~~~~~fD  116 (231)
T TIGR02752        46 GTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDA------GLHNVELVHGNAME-LP--FDDNSFD  116 (231)
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhc------CCCceEEEEechhc-CC--CCCCCcc
Confidence            4589999999999999999985 6779999999999999998876543      56789999999864 43  5678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++.+.-.|...        ...+++++.++|+|||.+++...
T Consensus       117 ~V~~~~~l~~~~~--------~~~~l~~~~~~Lk~gG~l~~~~~  152 (231)
T TIGR02752       117 YVTIGFGLRNVPD--------YMQVLREMYRVVKPGGKVVCLET  152 (231)
T ss_pred             EEEEecccccCCC--------HHHHHHHHHHHcCcCeEEEEEEC
Confidence            9998765433221        12589999999999999988653

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=8.9e-14  Score=117.77  Aligned_cols=117  Identities=18%  Similarity=0.299  Sum_probs=104.7

Q ss_pred             CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCc
Q 025470           65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s  142 (252)
                      +..+|||.|.|+|.++..||.. .|...++.+|+.++.++.|.+|+.+.      ++.| +.+..+|+.+..    ....
T Consensus        94 pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~------~l~d~v~~~~~Dv~~~~----~~~~  163 (256)
T COG2519          94 PGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF------GLGDRVTLKLGDVREGI----DEED  163 (256)
T ss_pred             CCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh------ccccceEEEeccccccc----cccc
Confidence            4679999999999999999975 77789999999999999999999876      6666 999999987533    2449


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      +|.|++..|+||             .+++.+..+|||||.+.+-+.+-+..+.+.+.+++.+
T Consensus       164 vDav~LDmp~PW-------------~~le~~~~~Lkpgg~~~~y~P~veQv~kt~~~l~~~g  212 (256)
T COG2519         164 VDAVFLDLPDPW-------------NVLEHVSDALKPGGVVVVYSPTVEQVEKTVEALRERG  212 (256)
T ss_pred             cCEEEEcCCChH-------------HHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhcC
Confidence            999999999999             6999999999999999999999999999999999884

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.59  E-value=7.4e-15  Score=111.52  Aligned_cols=115  Identities=17%  Similarity=0.248  Sum_probs=87.0

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      .+|||+|||+|.+++.+++.. ..+++|+|+++.+++.|+.++...     ....++.++++|+.+.. ..+.++.+|.|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~-----~~~~~~~~~~~D~~~~~-~~~~~~~~D~I   74 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRN-----GLDDRVEVIVGDARDLP-EPLPDGKFDLI   74 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHC-----TTTTTEEEEESHHHHHH-HTCTTT-EEEE
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHc-----cCCceEEEEECchhhch-hhccCceeEEE
Confidence            479999999999999999997 789999999999999999887653     12357999999997543 34678999999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +.|.|--.........+-....+++.+.++|+|||.+++.+.
T Consensus        75 v~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~  116 (117)
T PF13659_consen   75 VTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP  116 (117)
T ss_dssp             EE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            999765422111111222456899999999999999999874

...

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.59  E-value=1.5e-14  Score=118.92  Aligned_cols=102  Identities=22%  Similarity=0.216  Sum_probs=83.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.+++.+|...|+..++|||+++.|++.+++++...      +++|+.++++|+.+ +   ...+++|.
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~------~~~~i~~i~~d~~~-~---~~~~~fD~  112 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL------GLNNVEIVNGRAED-F---QHEEQFDV  112 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh------CCCCeEEEecchhh-c---cccCCccE
Confidence            45899999999999999999988889999999999999998877554      67789999999874 3   23578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |+++. -..           .+.+++.+.++|+|||.+++....
T Consensus       113 I~s~~-~~~-----------~~~~~~~~~~~LkpgG~lvi~~~~  144 (181)
T TIGR00138       113 ITSRA-LAS-----------LNVLLELTLNLLKVGGYFLAYKGK  144 (181)
T ss_pred             EEehh-hhC-----------HHHHHHHHHHhcCCCCEEEEEcCC
Confidence            98764 111           135889999999999999987543

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.59  E-value=4.9e-14  Score=114.52  Aligned_cols=120  Identities=18%  Similarity=0.158  Sum_probs=105.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.+++|||||+|..++.+|...|..++++||.++++++..++|++++      +.+|+.++.+||.+.|++ +  .++|.
T Consensus        35 g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~f------g~~n~~vv~g~Ap~~L~~-~--~~~da  105 (187)
T COG2242          35 GDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARF------GVDNLEVVEGDAPEALPD-L--PSPDA  105 (187)
T ss_pred             CCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHh------CCCcEEEEeccchHhhcC-C--CCCCE
Confidence            56999999999999999999899999999999999999999998876      799999999999877663 2  27999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMF  206 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~  206 (252)
                      ||+.-.-.-            +.+|+.+...|||||+++...-..+-...+++.++..+++
T Consensus       106 iFIGGg~~i------------~~ile~~~~~l~~ggrlV~naitlE~~~~a~~~~~~~g~~  154 (187)
T COG2242         106 IFIGGGGNI------------EEILEAAWERLKPGGRLVANAITLETLAKALEALEQLGGR  154 (187)
T ss_pred             EEECCCCCH------------HHHHHHHHHHcCcCCeEEEEeecHHHHHHHHHHHHHcCCc
Confidence            999764222            3699999999999999999888888888888889888765

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.57  E-value=3e-14  Score=123.15  Aligned_cols=108  Identities=18%  Similarity=0.190  Sum_probs=84.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+.  +..++|+|+|+.|++.|++++...      ++ +|+.++++|+.+ +.. +.++++|
T Consensus        45 ~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~------g~~~~v~~~~~d~~~-l~~-~~~~~fD  114 (255)
T PRK11036         45 PLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAK------GVSDNMQFIHCAAQD-IAQ-HLETPVD  114 (255)
T ss_pred             CCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhc------CCccceEEEEcCHHH-Hhh-hcCCCCC
Confidence            358999999999999999998  578999999999999998877543      43 689999999874 432 3467899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      .|+++..-.|....        ..+++++.++|||||.|.+...+.+
T Consensus       115 ~V~~~~vl~~~~~~--------~~~l~~~~~~LkpgG~l~i~~~n~~  153 (255)
T PRK11036        115 LILFHAVLEWVADP--------KSVLQTLWSVLRPGGALSLMFYNAN  153 (255)
T ss_pred             EEEehhHHHhhCCH--------HHHHHHHHHHcCCCeEEEEEEECcc
Confidence            99976543222111        2589999999999999998765543

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.57  E-value=8.6e-14  Score=115.93  Aligned_cols=121  Identities=17%  Similarity=0.209  Sum_probs=95.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||+|||+|.+++.+|... +..+++|+|+++.+++.|++++...      + ..|+.++.+|+.+.++.  ..+.+
T Consensus        41 ~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~------g~~~~v~~~~~d~~~~l~~--~~~~~  112 (198)
T PRK00377         41 GDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF------GVLNNIVLIKGEAPEILFT--INEKF  112 (198)
T ss_pred             cCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCCeEEEEechhhhHhh--cCCCC
Confidence            5589999999999999999874 5678999999999999999887654      4 47899999998654432  13579


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      |.|+++......           ..+++.+.++|+|||.+++.+-..+....+.+.+...++
T Consensus       113 D~V~~~~~~~~~-----------~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g~  163 (198)
T PRK00377        113 DRIFIGGGSEKL-----------KEIISASWEIIKKGGRIVIDAILLETVNNALSALENIGF  163 (198)
T ss_pred             CEEEECCCcccH-----------HHHHHHHHHHcCCCcEEEEEeecHHHHHHHHHHHHHcCC
Confidence            999986533221           369999999999999999876666667777778876663

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.57  E-value=2.4e-14  Score=121.92  Aligned_cols=131  Identities=18%  Similarity=0.239  Sum_probs=101.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|..++.+|++.+.+.++|||+.+.+++.|++++...     ..-+++.+++.|+.+ +.......++|.
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln-----~l~~ri~v~~~Di~~-~~~~~~~~~fD~  118 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALN-----PLEERIQVIEADIKE-FLKALVFASFDL  118 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhC-----cchhceeEehhhHHH-hhhcccccccCE
Confidence            45899999999999999999988899999999999999999988653     344689999999975 433455668999


Q ss_pred             EEEeCC----------CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          146 MFFLFP----------DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fp----------dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      |++|.|          +|...-.|+.-.....++++...+.|||||.++++...+.+.+ +.+.+...
T Consensus       119 Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~erl~e-i~~~l~~~  185 (248)
T COG4123         119 IICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRPERLAE-IIELLKSY  185 (248)
T ss_pred             EEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecHHHHHH-HHHHHHhc
Confidence            999975          1221112233334557899999999999999999987666554 44455543

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.57  E-value=2.7e-14  Score=124.65  Aligned_cols=106  Identities=25%  Similarity=0.462  Sum_probs=85.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC---CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE---VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~---~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...|||||||+|.++..+++..+.   ..++|+|+|+.|++.|.++           .+|+.++.+|+. .++  +++++
T Consensus        86 ~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----------~~~~~~~~~d~~-~lp--~~~~s  151 (272)
T PRK11088         86 ATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----------YPQVTFCVASSH-RLP--FADQS  151 (272)
T ss_pred             CCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----------CCCCeEEEeecc-cCC--CcCCc
Confidence            457999999999999999998764   3789999999999887542           357899999986 354  67889


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      +|.|+..+. |              ..++++.++|||||.|++.+........+.+.+
T Consensus       152 fD~I~~~~~-~--------------~~~~e~~rvLkpgG~li~~~p~~~~l~el~~~~  194 (272)
T PRK11088        152 LDAIIRIYA-P--------------CKAEELARVVKPGGIVITVTPGPRHLFELKGLI  194 (272)
T ss_pred             eeEEEEecC-C--------------CCHHHHHhhccCCCEEEEEeCCCcchHHHHHHh
Confidence            999998763 2              256899999999999999988766555555444

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.57  E-value=2.4e-14  Score=123.80  Aligned_cols=100  Identities=16%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.+|+..++|||+|+.|++.|+++           .+++.++.+|+.. +   .++.++|.
T Consensus        32 ~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~-----------~~~~~~~~~d~~~-~---~~~~~fD~   96 (258)
T PRK01683         32 PRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSR-----------LPDCQFVEADIAS-W---QPPQALDL   96 (258)
T ss_pred             CCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHh-----------CCCCeEEECchhc-c---CCCCCccE
Confidence            4589999999999999999999999999999999999887653           3578899999863 2   34568999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+.++.-.|.+.        ...+++++.++|+|||.+++.++
T Consensus        97 v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~~~~~~~  131 (258)
T PRK01683         97 IFANASLQWLPD--------HLELFPRLVSLLAPGGVLAVQMP  131 (258)
T ss_pred             EEEccChhhCCC--------HHHHHHHHHHhcCCCcEEEEECC
Confidence            999887767542        23699999999999999999764

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.56  E-value=2.3e-14  Score=123.85  Aligned_cols=98  Identities=16%  Similarity=0.200  Sum_probs=80.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|+..++|+|+|+.|++.|++             .++.++++|+.. +   .+++++|.
T Consensus        30 ~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-------------~~~~~~~~d~~~-~---~~~~~fD~   92 (255)
T PRK14103         30 ARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-------------RGVDARTGDVRD-W---KPKPDTDV   92 (255)
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------cCCcEEEcChhh-C---CCCCCceE
Confidence            458999999999999999999999999999999999987743             157899999863 3   24679999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++++.-.|...        ...+++++.++|||||.+++...
T Consensus        93 v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~l~~~~~  127 (255)
T PRK14103         93 VVSNAALQWVPE--------HADLLVRWVDELAPGSWIAVQVP  127 (255)
T ss_pred             EEEehhhhhCCC--------HHHHHHHHHHhCCCCcEEEEEcC
Confidence            999876655432        13699999999999999999753

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.55  E-value=2.6e-14  Score=117.91  Aligned_cols=154  Identities=16%  Similarity=0.220  Sum_probs=109.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|+|||||.|..+..|++++|+..++|||-|++|++.|+.           .++|++|..+|+..    +-++...|.+
T Consensus        32 ~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-----------rlp~~~f~~aDl~~----w~p~~~~dll   96 (257)
T COG4106          32 RRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-----------RLPDATFEEADLRT----WKPEQPTDLL   96 (257)
T ss_pred             ceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-----------hCCCCceecccHhh----cCCCCccchh
Confidence            47999999999999999999999999999999999988754           47899999999863    4457788999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc---hHHHHHHHHHHhcCCCcccccccccccCccccCC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV---EELGDWMRSCLENHPMFEALTKEELEADPVVKLL  223 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  223 (252)
                      +.|-.-.|--        .+..+|..+...|.|||.+.++..+   +.-..-|.+...+.|+=.........-.+   ..
T Consensus        97 faNAvlqWlp--------dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~---v~  165 (257)
T COG4106          97 FANAVLQWLP--------DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAP---LP  165 (257)
T ss_pred             hhhhhhhhcc--------ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCC---CC
Confidence            9876555532        1346999999999999999998753   33455566666665542222221111111   12


Q ss_pred             CCCCHHHHHHHHcC-CCeEEEEEE
Q 025470          224 SSATEEGQKVARNG-GQTFQAVFR  246 (252)
Q Consensus       224 ~~~t~~e~~~~~~G-~~i~~~~~~  246 (252)
                      .+.++||...-..- -.||..+|-
T Consensus       166 s~a~Yy~lLa~~~~rvDiW~T~Y~  189 (257)
T COG4106         166 SPAAYYELLAPLACRVDIWHTTYY  189 (257)
T ss_pred             CHHHHHHHhCcccceeeeeeeecc
Confidence            45567775543322 256777764

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.55  E-value=8.6e-14  Score=126.16  Aligned_cols=124  Identities=11%  Similarity=0.154  Sum_probs=92.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||+|||+|.+++.+++++|...++|+|+|+.+++.|++++...   ...+..++.++..|+...    +++.++|.|
T Consensus       230 ~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n---~~~~~~~v~~~~~D~l~~----~~~~~fDlI  302 (378)
T PRK15001        230 GEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN---MPEALDRCEFMINNALSG----VEPFRFNAV  302 (378)
T ss_pred             CeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc---CcccCceEEEEEcccccc----CCCCCEEEE
Confidence            4899999999999999999999999999999999999999887653   111235789999887432    345689999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHH
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCL  200 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~  200 (252)
                      ++|.|-.+-..-   ..-+...+++.+.++|+|||.|+++.+. .+|...+.+.+
T Consensus       303 lsNPPfh~~~~~---~~~ia~~l~~~a~~~LkpGG~L~iV~nr~l~y~~~L~~~f  354 (378)
T PRK15001        303 LCNPPFHQQHAL---TDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIF  354 (378)
T ss_pred             EECcCcccCccC---CHHHHHHHHHHHHHhcccCCEEEEEEecCcCHHHHHHHHc
Confidence            998765332110   0012246899999999999999999743 45655555544

>TIGR00740 methyltransferase, putative

Probab=99.54  E-value=8.7e-14  Score=119.11  Aligned_cols=106  Identities=16%  Similarity=0.250  Sum_probs=82.1

Q ss_pred             CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|.++..+++.  +|+++++|+|+|+.|++.|++++...     ....++.++++|+.. ++  +  ..+
T Consensus        54 ~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~-----~~~~~v~~~~~d~~~-~~--~--~~~  123 (239)
T TIGR00740        54 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRH-VE--I--KNA  123 (239)
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEECChhh-CC--C--CCC
Confidence            458999999999999999997  47899999999999999998877542     223579999999863 33  2  347


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|++++.-.|.....      ...+++++.++|+|||.|++..
T Consensus       124 d~v~~~~~l~~~~~~~------~~~~l~~i~~~LkpgG~l~i~d  161 (239)
T TIGR00740       124 SMVILNFTLQFLPPED------RIALLTKIYEGLNPNGVLVLSE  161 (239)
T ss_pred             CEEeeecchhhCCHHH------HHHHHHHHHHhcCCCeEEEEee
Confidence            8888877655532110      1269999999999999999863

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.54  E-value=2e-13  Score=115.26  Aligned_cols=153  Identities=14%  Similarity=0.191  Sum_probs=104.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC------CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE------VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~------~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      ...+||++||+|.++..+.+.-+.      .+|+++||++.|+..+.++..+. ..  ...+.+.++.+||+ .|+  |+
T Consensus       101 ~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~-~l--~~~~~~~w~~~dAE-~Lp--Fd  174 (296)
T KOG1540|consen  101 GMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKR-PL--KASSRVEWVEGDAE-DLP--FD  174 (296)
T ss_pred             CCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhc-CC--CcCCceEEEeCCcc-cCC--CC
Confidence            468999999999999999998665      79999999999999888765431 11  12235999999997 587  99


Q ss_pred             CCcccEEEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH---HHHHHHHHHhcCCCcccccc
Q 025470          140 KGQLTKMFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE---LGDWMRSCLENHPMFEALTK  211 (252)
Q Consensus       140 ~~s~d~i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~---~~~~~~~~~~~~~~~~~~~~  211 (252)
                      ++++|...+-|     ++|.             ..|++++|+|||||+|.+.--+..   +..|+..+    ..|..++.
T Consensus       175 d~s~D~yTiafGIRN~th~~-------------k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~fy~~----ysf~Vlpv  237 (296)
T KOG1540|consen  175 DDSFDAYTIAFGIRNVTHIQ-------------KALREAYRVLKPGGRFSCLEFSKVENEPLKWFYDQ----YSFDVLPV  237 (296)
T ss_pred             CCcceeEEEecceecCCCHH-------------HHHHHHHHhcCCCcEEEEEEccccccHHHHHHHHh----hhhhhhch
Confidence            99999998754     4443             599999999999999987543322   22322222    12222221


Q ss_pred             --cccccCc--------cccCCCCCCHHHHHHHHcCCCeE
Q 025470          212 --EELEADP--------VVKLLSSATEEGQKVARNGGQTF  241 (252)
Q Consensus       212 --~~~~~~p--------~~~~~~~~t~~e~~~~~~G~~i~  241 (252)
                        +.++.+-        .-+...+..+|+.+...+|+..-
T Consensus       238 lG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~  277 (296)
T KOG1540|consen  238 LGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSV  277 (296)
T ss_pred             hhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCccc
Confidence              1111110        01112345589999999998754

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.53  E-value=2.3e-13  Score=116.72  Aligned_cols=131  Identities=14%  Similarity=0.260  Sum_probs=96.0

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||+|||+|.++..++...|...++|+|+++.+++.|+.++...      +++|+.++++|+..    .++++++|.|
T Consensus        89 ~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~----~~~~~~fD~V  158 (251)
T TIGR03534        89 LRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL------GLDNVTFLQSDWFE----PLPGGKFDLI  158 (251)
T ss_pred             CeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhc----cCcCCceeEE
Confidence            4899999999999999999999999999999999999998887553      66789999999864    2456789999


Q ss_pred             EEeCCCCcccccc---------cccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccc
Q 025470          147 FFLFPDPHFKEKN---------HRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEA  208 (252)
Q Consensus       147 ~~~fpdP~~k~~h---------~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~  208 (252)
                      +.|.|--.....+         ....         .....+++.+.++|+|||.+++..... ....+.+.+...+ |..
T Consensus       159 i~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~~~~-~~~~~~~~l~~~g-f~~  236 (251)
T TIGR03534       159 VSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEIGYD-QGEAVRALFEAAG-FAD  236 (251)
T ss_pred             EECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEECcc-HHHHHHHHHHhCC-CCc
Confidence            9987622111000         0000         011368899999999999999987543 3445566666554 543


Q ss_pred             c
Q 025470          209 L  209 (252)
Q Consensus       209 ~  209 (252)
                      +
T Consensus       237 v  237 (251)
T TIGR03534       237 V  237 (251)
T ss_pred             e
Confidence            3

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.53  E-value=6.8e-14  Score=120.49  Aligned_cols=106  Identities=18%  Similarity=0.240  Sum_probs=80.4

Q ss_pred             CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|..+..+++.  .|+..++|+|+|+.|++.|++++...     ....++.++++|+.+ ++    ...+
T Consensus        57 ~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~-----~~~~~v~~~~~d~~~-~~----~~~~  126 (247)
T PRK15451         57 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRD-IA----IENA  126 (247)
T ss_pred             CCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc-----CCCCCeEEEeCChhh-CC----CCCC
Confidence            458999999999999999984  68899999999999999999887543     123479999999864 32    2347


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|++++.-.+....      -...+++++.++|||||.|++..
T Consensus       127 D~vv~~~~l~~l~~~------~~~~~l~~i~~~LkpGG~l~l~e  164 (247)
T PRK15451        127 SMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSE  164 (247)
T ss_pred             CEEehhhHHHhCCHH------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            888876543221100      01359999999999999999864

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.53  E-value=4e-14  Score=113.82  Aligned_cols=154  Identities=22%  Similarity=0.250  Sum_probs=104.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccc------cCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKY------IPNY  137 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~------l~~~  137 (252)
                      ..+.|||+|||+|.++..||+..=...++|+|.|+++++.|+.....      .+.+| |+|.+.|+...      ++-.
T Consensus        67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~------~~~~n~I~f~q~DI~~~~~~~~qfdlv  140 (227)
T KOG1271|consen   67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAER------DGFSNEIRFQQLDITDPDFLSGQFDLV  140 (227)
T ss_pred             cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHh------cCCCcceeEEEeeccCCcccccceeEE
Confidence            35699999999999999999984223489999999999998865433      47777 99999998641      1122


Q ss_pred             CCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccC
Q 025470          138 FEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEAD  217 (252)
Q Consensus       138 ~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (252)
                      ++.+++|.|.+.. |-.-.      |+  ..++..+.+.|+|||.|+|.+=| .-.+++.+.+.... |+...     .-
T Consensus       141 lDKGT~DAisLs~-d~~~~------r~--~~Y~d~v~~ll~~~gifvItSCN-~T~dELv~~f~~~~-f~~~~-----tv  204 (227)
T KOG1271|consen  141 LDKGTLDAISLSP-DGPVG------RL--VVYLDSVEKLLSPGGIFVITSCN-FTKDELVEEFENFN-FEYLS-----TV  204 (227)
T ss_pred             eecCceeeeecCC-CCccc------ce--eeehhhHhhccCCCcEEEEEecC-ccHHHHHHHHhcCC-eEEEE-----ee
Confidence            4467777777653 32211      11  24788899999999999997632 23455666665543 33321     11


Q ss_pred             ccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025470          218 PVVKLLSSATEEGQKVARNGGQTFQAVFRRI  248 (252)
Q Consensus       218 p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~  248 (252)
                      |     .+...|+   ...|..+..++|+++
T Consensus       205 p-----~ptF~Fg---G~~G~tvt~vaF~~k  227 (227)
T KOG1271|consen  205 P-----TPTFMFG---GSVGSTVTSVAFLRK  227 (227)
T ss_pred             c-----cceEEec---cccccEEEEEEEecC
Confidence            1     1223566   678999999999764

>PRK04266 fibrillarin; Provisional

Probab=99.52  E-value=2.1e-13  Score=115.86  Aligned_cols=102  Identities=14%  Similarity=0.160  Sum_probs=80.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC-ccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP-NYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~-~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..+|+..+...++|+|+++.|++.+.+++.        ..+|+.++.+|+..... ..+ ..++|
T Consensus        73 g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~--------~~~nv~~i~~D~~~~~~~~~l-~~~~D  143 (226)
T PRK04266         73 GSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE--------ERKNIIPILADARKPERYAHV-VEKVD  143 (226)
T ss_pred             CCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh--------hcCCcEEEECCCCCcchhhhc-cccCC
Confidence            568999999999999999999876689999999999987765542        23689999999863110 112 35699


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+...++||..          ..+++++.++|||||.|++.
T Consensus       144 ~i~~d~~~p~~~----------~~~L~~~~r~LKpGG~lvI~  175 (226)
T PRK04266        144 VIYQDVAQPNQA----------EIAIDNAEFFLKDGGYLLLA  175 (226)
T ss_pred             EEEECCCChhHH----------HHHHHHHHHhcCCCcEEEEE
Confidence            999988888731          23689999999999999995

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.52  E-value=1.7e-13  Score=115.63  Aligned_cols=99  Identities=17%  Similarity=0.275  Sum_probs=81.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+..+ +..++|+|+++.+++.|++++...      +++|+.++.+|+.+.+.   ....+|
T Consensus        78 ~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~------g~~~v~~~~~d~~~~~~---~~~~fD  148 (215)
T TIGR00080        78 GMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL------GLDNVIVIVGDGTQGWE---PLAPYD  148 (215)
T ss_pred             cCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCeEEEECCcccCCc---ccCCCC
Confidence            56899999999999999999854 567999999999999999888664      67899999999864322   246899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++..+.+.              +...+.+.|+|||++++..
T Consensus       149 ~Ii~~~~~~~--------------~~~~~~~~L~~gG~lv~~~  177 (215)
T TIGR00080       149 RIYVTAAGPK--------------IPEALIDQLKEGGILVMPV  177 (215)
T ss_pred             EEEEcCCccc--------------ccHHHHHhcCcCcEEEEEE
Confidence            9998765432              5567889999999999865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.52  E-value=4e-13  Score=118.01  Aligned_cols=126  Identities=12%  Similarity=0.143  Sum_probs=93.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||+|||+|.+++.+|...|+..++|+|+|+.+++.|++++...      ++ .++.++++|+.+.    ++++++|.
T Consensus       123 ~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~------~~~~~i~~~~~D~~~~----~~~~~fD~  192 (284)
T TIGR03533       123 KRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH------GLEDRVTLIQSDLFAA----LPGRKYDL  192 (284)
T ss_pred             CEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECchhhc----cCCCCccE
Confidence            4899999999999999999999999999999999999999987653      44 4799999997532    34568999


Q ss_pred             EEEeCCCCc-------cc-ccccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPH-------FK-EKNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~-------~k-~~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |++|.|---       .. .+|..+.         -....+++.+.+.|+|||.+++.+....  +.+.+.+...+
T Consensus       193 Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g~~~--~~v~~~~~~~~  266 (284)
T TIGR03533       193 IVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVGNSM--EALEEAYPDVP  266 (284)
T ss_pred             EEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcCH--HHHHHHHHhCC
Confidence            999865110       00 0011110         1225689999999999999999887532  46666666654

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.52  E-value=2.6e-13  Score=111.17  Aligned_cols=125  Identities=18%  Similarity=0.211  Sum_probs=91.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||+|||+|.++..++...+  .++|+|+++.+++.+++++...      +. ++.++.+|+.+.    + .+++|.|
T Consensus        21 ~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~----~-~~~fD~V   86 (179)
T TIGR00537        21 DDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLN------NV-GLDVVMTDLFKG----V-RGKFDVI   86 (179)
T ss_pred             CeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEcccccc----c-CCcccEE
Confidence            4799999999999999999865  8999999999999999887543      33 689999997532    2 4589999


Q ss_pred             EEeCCCCccc---cccc----------cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          147 FFLFPDPHFK---EKNH----------RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       147 ~~~fpdP~~k---~~h~----------krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      +.+.|-....   ..+.          ..+.+...+++++.++|+|||.+++.+....-...+.+.+...++
T Consensus        87 i~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf  158 (179)
T TIGR00537        87 LFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGF  158 (179)
T ss_pred             EECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCC
Confidence            9886521110   0000          001124578999999999999999987655435566777766653

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.51  E-value=1.8e-13  Score=113.94  Aligned_cols=104  Identities=13%  Similarity=0.151  Sum_probs=79.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.++..||++  +.+++|+|+|+.|++.|++++...      ++.|+.++..|+.. ++  + ++++|.
T Consensus        31 ~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~------~~~~v~~~~~d~~~-~~--~-~~~fD~   98 (197)
T PRK11207         31 PGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAE------NLDNLHTAVVDLNN-LT--F-DGEYDF   98 (197)
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHc------CCCcceEEecChhh-CC--c-CCCcCE
Confidence            347999999999999999987  568999999999999998876543      66789999999753 32  3 467999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+.++.-.+...      -....+++.+.++|+|||.+++.+
T Consensus        99 I~~~~~~~~~~~------~~~~~~l~~i~~~LkpgG~~~~~~  134 (197)
T PRK11207         99 ILSTVVLMFLEA------KTIPGLIANMQRCTKPGGYNLIVA  134 (197)
T ss_pred             EEEecchhhCCH------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            998764322110      012369999999999999966543

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.51  E-value=4e-15  Score=109.96  Aligned_cols=99  Identities=24%  Similarity=0.389  Sum_probs=62.6

Q ss_pred             EEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEe
Q 025470           70 ADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFL  149 (252)
Q Consensus        70 LDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~  149 (252)
                      ||||||+|.++..++..+|...++|+|+|+.|++.|++++...      ...+...+..+..+... ....+++|.|+..
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~------~~~~~~~~~~~~~~~~~-~~~~~~fD~V~~~   73 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL------GNDNFERLRFDVLDLFD-YDPPESFDLVVAS   73 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC------T---EEEEE--SSS----CCC----SEEEEE
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc------CCcceeEEEeecCChhh-cccccccceehhh
Confidence            7999999999999999999999999999999998887777653      33444455544432221 2223699999988


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhhcCCcEE
Q 025470          150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII  183 (252)
Q Consensus       150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l  183 (252)
                      ..-.|...        ...+++.+.++|+|||.|
T Consensus        74 ~vl~~l~~--------~~~~l~~~~~~L~pgG~l   99 (99)
T PF08242_consen   74 NVLHHLED--------IEAVLRNIYRLLKPGGIL   99 (99)
T ss_dssp             -TTS--S---------HHHHHHHHTTT-TSS-EE
T ss_pred             hhHhhhhh--------HHHHHHHHHHHcCCCCCC
Confidence            76666521        126999999999999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.50  E-value=1.5e-13  Score=118.36  Aligned_cols=100  Identities=14%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++..  +..++|+|+|+.|++.|+++.           ..+.++.+|+.. ++  ++++++|.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~-----------~~~~~~~~d~~~-~~--~~~~~fD~  106 (251)
T PRK10258         43 FTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKD-----------AADHYLAGDIES-LP--LATATFDL  106 (251)
T ss_pred             CCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhC-----------CCCCEEEcCccc-Cc--CCCCcEEE
Confidence            357999999999999999875  578999999999998876532           234678899863 54  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |+.+++-.|....        ..++.++.++|+|||.+++.+..
T Consensus       107 V~s~~~l~~~~d~--------~~~l~~~~~~Lk~gG~l~~~~~~  142 (251)
T PRK10258        107 AWSNLAVQWCGNL--------STALRELYRVVRPGGVVAFTTLV  142 (251)
T ss_pred             EEECchhhhcCCH--------HHHHHHHHHHcCCCeEEEEEeCC
Confidence            9998776664321        36999999999999999998744

>PRK06922 hypothetical protein; Provisional

Probab=99.49  E-value=1.9e-13  Score=129.88  Aligned_cols=114  Identities=17%  Similarity=0.238  Sum_probs=86.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+.+|+..++|+|+|+.|++.|+++...       ...++.++++|+.. ++..++++++|.
T Consensus       419 g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~-------~g~~ie~I~gDa~d-Lp~~fedeSFDv  490 (677)
T PRK06922        419 GDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQN-------EGRSWNVIKGDAIN-LSSSFEKESVDT  490 (677)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh-------cCCCeEEEEcchHh-CccccCCCCEEE
Confidence            4589999999999999999999999999999999999998876532       12478899999874 666678899999


Q ss_pred             EEEeCCCCcc-c----cccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHF-K----EKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~-k----~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+.+++-.|. .    ....-..-....+++++.++|||||.+++..
T Consensus       491 VVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D  537 (677)
T PRK06922        491 IVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRD  537 (677)
T ss_pred             EEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEe
Confidence            9877543221 0    0000000122469999999999999999963

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.49  E-value=4.5e-13  Score=112.26  Aligned_cols=99  Identities=12%  Similarity=0.194  Sum_probs=79.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|..+..+|+..+ ...++|+|+++++++.|++++...      +.. ++.++.+|+.+.++   ..+.+
T Consensus        73 ~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~------~~~~~v~~~~~d~~~~~~---~~~~f  143 (205)
T PRK13944         73 GMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL------GYWGVVEVYHGDGKRGLE---KHAPF  143 (205)
T ss_pred             CCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEEECCcccCCc---cCCCc
Confidence            45899999999999999999854 568999999999999998887653      443 69999999864332   35689


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|++...-++              +.+++.++|+|||++++..
T Consensus       144 D~Ii~~~~~~~--------------~~~~l~~~L~~gG~lvi~~  173 (205)
T PRK13944        144 DAIIVTAAAST--------------IPSALVRQLKDGGVLVIPV  173 (205)
T ss_pred             cEEEEccCcch--------------hhHHHHHhcCcCcEEEEEE
Confidence            99999876443              5567889999999998854

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.49  E-value=4.4e-13  Score=116.86  Aligned_cols=105  Identities=14%  Similarity=0.104  Sum_probs=82.7

Q ss_pred             CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ....|||||||+|..++.+++. .+...++|+|+++.+++.|+++....      +.+|+.++.+|+. .++  ++++++
T Consensus        77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~------g~~~v~~~~~d~~-~l~--~~~~~f  147 (272)
T PRK11873         77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA------GYTNVEFRLGEIE-ALP--VADNSV  147 (272)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc------CCCCEEEEEcchh-hCC--CCCCce
Confidence            3569999999999988887776 45668999999999999999876553      6679999999986 354  567899


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+.+..-.+...        ...+++++.++|||||+|++.
T Consensus       148 D~Vi~~~v~~~~~d--------~~~~l~~~~r~LkpGG~l~i~  182 (272)
T PRK11873        148 DVIISNCVINLSPD--------KERVFKEAFRVLKPGGRFAIS  182 (272)
T ss_pred             eEEEEcCcccCCCC--------HHHHHHHHHHHcCCCcEEEEE
Confidence            99987653222111        125999999999999999985

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.49  E-value=5e-14  Score=104.62  Aligned_cols=97  Identities=25%  Similarity=0.412  Sum_probs=71.5

Q ss_pred             EEEEcCcccHHHHHHHHHC---CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           69 FADIGCGFGGLLISLSTLF---PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~---p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      |||+|||+|..+..++..+   |...++|+|+|+.|++.++++....      +. +++++++|+.+ ++  +..+++|.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~------~~-~~~~~~~D~~~-l~--~~~~~~D~   70 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSED------GP-KVRFVQADARD-LP--FSDGKFDL   70 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHT------TT-TSEEEESCTTC-HH--HHSSSEEE
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhc------CC-ceEEEECCHhH-Cc--ccCCCeeE
Confidence            7999999999999999986   5589999999999999998876542      33 89999999974 54  45679999


Q ss_pred             EEEeCC-CCccccccccccccCHHHHHHHHHhhcCCc
Q 025470          146 MFFLFP-DPHFKEKNHRRRVISPHLLDEYAYVLGVGG  181 (252)
Q Consensus       146 i~~~fp-dP~~k~~h~krr~~~~~~l~~~~~~LkpgG  181 (252)
                      |+.... -.+..      .-....+++++.++|+|||
T Consensus        71 v~~~~~~~~~~~------~~~~~~ll~~~~~~l~pgG  101 (101)
T PF13649_consen   71 VVCSGLSLHHLS------PEELEALLRRIARLLRPGG  101 (101)
T ss_dssp             EEE-TTGGGGSS------HHHHHHHHHHHHHTEEEEE
T ss_pred             EEEcCCccCCCC------HHHHHHHHHHHHHHhCCCC
Confidence            998543 11111      1112469999999999998

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.48  E-value=6.5e-13  Score=111.90  Aligned_cols=99  Identities=18%  Similarity=0.281  Sum_probs=80.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+.. ++..++|+|+++.+++.|++++...      +..|+.++.+|+...   +.+.+.+|
T Consensus        77 g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------g~~~v~~~~gd~~~~---~~~~~~fD  147 (212)
T PRK13942         77 GMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------GYDNVEVIVGDGTLG---YEENAPYD  147 (212)
T ss_pred             cCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccC---CCcCCCcC
Confidence            4589999999999999999885 4578999999999999999887654      678999999998632   23457899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-+              .+...+.+.|||||++++..
T Consensus       148 ~I~~~~~~~--------------~~~~~l~~~LkpgG~lvi~~  176 (212)
T PRK13942        148 RIYVTAAGP--------------DIPKPLIEQLKDGGIMVIPV  176 (212)
T ss_pred             EEEECCCcc--------------cchHHHHHhhCCCcEEEEEE
Confidence            999865422              24457788999999998864

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.47  E-value=6.5e-13  Score=112.59  Aligned_cols=103  Identities=23%  Similarity=0.358  Sum_probs=83.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++..|...++|+|+++.+++.++.+.          .+|+.++.+|+.. ++  ++++++|.|
T Consensus        36 ~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----------~~~~~~~~~d~~~-~~--~~~~~fD~v  102 (240)
T TIGR02072        36 ASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL----------SENVQFICGDAEK-LP--LEDSSFDLI  102 (240)
T ss_pred             CeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc----------CCCCeEEecchhh-CC--CCCCceeEE
Confidence            4799999999999999999999889999999999988776532          1478999999863 33  567899999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      +.++.-.|....        ..++.++.++|+|||.+++.+...
T Consensus       103 i~~~~l~~~~~~--------~~~l~~~~~~L~~~G~l~~~~~~~  138 (240)
T TIGR02072       103 VSNLALQWCDDL--------SQALSELARVLKPGGLLAFSTFGP  138 (240)
T ss_pred             EEhhhhhhccCH--------HHHHHHHHHHcCCCcEEEEEeCCc
Confidence            988766554321        259999999999999999976433

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.46  E-value=1.3e-12  Score=112.81  Aligned_cols=128  Identities=12%  Similarity=0.179  Sum_probs=93.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||+|||+|.+++.++...|...++|+|+|+.+++.|++++...      +   ++++++|+.+.++..+ .+.+|.|
T Consensus        88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~------~---~~~~~~D~~~~l~~~~-~~~fDlV  157 (251)
T TIGR03704        88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA------G---GTVHEGDLYDALPTAL-RGRVDIL  157 (251)
T ss_pred             CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------C---CEEEEeechhhcchhc-CCCEeEE
Confidence            4799999999999999999998889999999999999999887542      2   4788999764443222 3579999


Q ss_pred             EEeCCC-Cccc--------ccccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          147 FFLFPD-PHFK--------EKNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       147 ~~~fpd-P~~k--------~~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      ++|.|- |...        ..|..+.         -+...+++.+.++|+|||.+++.+.... ...+.+.+..+++
T Consensus       158 v~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~~~-~~~v~~~l~~~g~  233 (251)
T TIGR03704       158 AANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSERQ-APLAVEAFARAGL  233 (251)
T ss_pred             EECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECcch-HHHHHHHHHHCCC
Confidence            998762 1100        0111111         1234788888999999999999987654 5667777877654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.46  E-value=5.7e-13  Score=115.48  Aligned_cols=107  Identities=21%  Similarity=0.354  Sum_probs=83.9

Q ss_pred             CCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCC
Q 025470           63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        63 ~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~  141 (252)
                      .+++..|||||||.|.+++.+|+.+ +++|+|+++|+++.+.+++++.+.      ++. |+.++-.|..+ +.     +
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~------gl~~~v~v~l~d~rd-~~-----e  136 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAAR------GLEDNVEVRLQDYRD-FE-----E  136 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHc------CCCcccEEEeccccc-cc-----c
Confidence            4457799999999999999999999 899999999999999999988765      666 89999999763 33     2


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .||.|+..----+....+      .+.|++.+.++|+|||.+.+.+.
T Consensus       137 ~fDrIvSvgmfEhvg~~~------~~~ff~~~~~~L~~~G~~llh~I  177 (283)
T COG2230         137 PFDRIVSVGMFEHVGKEN------YDDFFKKVYALLKPGGRMLLHSI  177 (283)
T ss_pred             ccceeeehhhHHHhCccc------HHHHHHHHHhhcCCCceEEEEEe
Confidence            388887532111111111      24799999999999999988764

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.46  E-value=1.7e-12  Score=115.22  Aligned_cols=126  Identities=10%  Similarity=0.143  Sum_probs=92.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||+|||+|.+++.+|...|+..++|+|+|+.+++.|++++...      ++ .++.++++|+.+.    ++++++|.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~------~l~~~i~~~~~D~~~~----l~~~~fDl  204 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH------GLEDRVTLIESDLFAA----LPGRRYDL  204 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCCcEEEEECchhhh----CCCCCccE
Confidence            4799999999999999999999999999999999999999988654      44 4699999997543    33568999


Q ss_pred             EEEeCCCCccc--------ccccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFK--------EKNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k--------~~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |++|.|---..        .+|....         -....+++.+.+.|+|||.+++.+...  ...+.+.+...+
T Consensus       205 IvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~g~~--~~~~~~~~~~~~  278 (307)
T PRK11805        205 IVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEVGNS--RVHLEEAYPDVP  278 (307)
T ss_pred             EEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEECcC--HHHHHHHHhhCC
Confidence            99985410000        0111110         123468999999999999999988754  234555565543

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=99.46  E-value=1.5e-12  Score=111.55  Aligned_cols=117  Identities=20%  Similarity=0.279  Sum_probs=99.6

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCC---C
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFE---K  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~---~  140 (252)
                      +.+|||.|.|+|.++..||+. .|...++..|++++.++.|++++...      ++ .||.+.+.|+..   ..|.   +
T Consensus        41 G~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~------gl~~~v~~~~~Dv~~---~g~~~~~~  111 (247)
T PF08704_consen   41 GSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERH------GLDDNVTVHHRDVCE---EGFDEELE  111 (247)
T ss_dssp             T-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHT------TCCTTEEEEES-GGC---G--STT-T
T ss_pred             CCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHc------CCCCCceeEecceec---cccccccc
Confidence            569999999999999999986 78889999999999999999998775      55 589999999852   2232   3


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhh-cCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL-GVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L-kpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      ..+|.|++..|+||             ..+..+.++| ++||.|.+-+.+-+....+.+.+.+++
T Consensus       112 ~~~DavfLDlp~Pw-------------~~i~~~~~~L~~~gG~i~~fsP~ieQv~~~~~~L~~~g  163 (247)
T PF08704_consen  112 SDFDAVFLDLPDPW-------------EAIPHAKRALKKPGGRICCFSPCIEQVQKTVEALREHG  163 (247)
T ss_dssp             TSEEEEEEESSSGG-------------GGHHHHHHHE-EEEEEEEEEESSHHHHHHHHHHHHHTT
T ss_pred             CcccEEEEeCCCHH-------------HHHHHHHHHHhcCCceEEEECCCHHHHHHHHHHHHHCC
Confidence            67999999999999             4899999999 999999999999999999999999886

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PRK14968 putative methyltransferase; Provisional

Probab=99.45  E-value=1.6e-12  Score=106.48  Aligned_cols=127  Identities=19%  Similarity=0.215  Sum_probs=89.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||+|||+|.++..++..  +.+++|+|+++.+++.+++++...      +..+  +.++.+|+.+.    +.+..+
T Consensus        24 ~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~----~~~~~~   91 (188)
T PRK14968         24 GDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLN------NIRNNGVEVIRSDLFEP----FRGDKF   91 (188)
T ss_pred             CCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHc------CCCCcceEEEecccccc----ccccCc
Confidence            458999999999999999998  679999999999999998877543      4444  88999997532    345589


Q ss_pred             cEEEEeCCCCc----------ccccc---ccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPH----------FKEKN---HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~----------~k~~h---~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |.|+.+.|--.          .....   ...+.....+++++.++|+|||.+++......-.+.+.+.+.+.+
T Consensus        92 d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~~~~l~~~~~~~g  165 (188)
T PRK14968         92 DVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTGEDEVLEYLEKLG  165 (188)
T ss_pred             eEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCCHHHHHHHHHHCC
Confidence            99998765211          00000   000112346899999999999999887654333445566666554

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.45  E-value=5.7e-13  Score=115.82  Aligned_cols=104  Identities=17%  Similarity=0.237  Sum_probs=79.2

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +...|||||||+|..+..+|..+ ++.++|+|+++.+++.|++++.        ...++.++.+|+.. .  .++++++|
T Consensus        52 ~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~--------~~~~i~~~~~D~~~-~--~~~~~~FD  119 (263)
T PTZ00098         52 ENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNS--------DKNKIEFEANDILK-K--DFPENTFD  119 (263)
T ss_pred             CCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcC--------cCCceEEEECCccc-C--CCCCCCeE
Confidence            35689999999999999998875 6789999999999998876542        23579999999752 3  36778999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+....-.+....      -...++++++++|||||.|++.
T Consensus       120 ~V~s~~~l~h~~~~------d~~~~l~~i~r~LkPGG~lvi~  155 (263)
T PTZ00098        120 MIYSRDAILHLSYA------DKKKLFEKCYKWLKPNGILLIT  155 (263)
T ss_pred             EEEEhhhHHhCCHH------HHHHHHHHHHHHcCCCcEEEEE
Confidence            99974321111000      0136999999999999999985

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.45  E-value=5.8e-13  Score=112.62  Aligned_cols=103  Identities=28%  Similarity=0.418  Sum_probs=79.8

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .|||||||+|.++..+++.+|+..++|+|+|+.+++.|++++...     .-..++.++.+|+.. .+  + ++++|.|+
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~-----gl~~~i~~~~~d~~~-~~--~-~~~fD~I~   72 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL-----GLQGRIRIFYRDSAK-DP--F-PDTYDLVF   72 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----CCCcceEEEeccccc-CC--C-CCCCCEee
Confidence            599999999999999999998899999999999999998877543     123478999999753 22  2 45899998


Q ss_pred             EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ....-.+...        ...+++.+.++|+|||.+++..
T Consensus        73 ~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~  104 (224)
T smart00828       73 GFEVIHHIKD--------KMDLFSNISRHLKDGGHLVLAD  104 (224)
T ss_pred             hHHHHHhCCC--------HHHHHHHHHHHcCCCCEEEEEE
Confidence            6432111110        1369999999999999999865

>PRK14967 putative methyltransferase; Provisional

Probab=99.45  E-value=1.7e-12  Score=110.03  Aligned_cols=127  Identities=13%  Similarity=0.089  Sum_probs=89.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.++..+++.. ...++|+|+++.+++.|++++...      +. ++.++.+|+.+    .++++++|.
T Consensus        37 ~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~~~------~~-~~~~~~~d~~~----~~~~~~fD~  104 (223)
T PRK14967         37 GRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNALLA------GV-DVDVRRGDWAR----AVEFRPFDV  104 (223)
T ss_pred             CCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHh------CC-eeEEEECchhh----hccCCCeeE
Confidence            4589999999999999999863 348999999999999998877543      33 58899999753    245678999


Q ss_pred             EEEeCCCCccccc-------------cccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEK-------------NHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~-------------h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |+++.|-......             ..........+++++.++|||||.+++.+..........+.+...+
T Consensus       105 Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~~~~~~~~~l~~~g  176 (223)
T PRK14967        105 VVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQSELSGVERTLTRLSEAG  176 (223)
T ss_pred             EEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEecccCHHHHHHHHHHCC
Confidence            9998542111000             0001112345888999999999999987554433445556666554

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.45  E-value=2.8e-12  Score=111.71  Aligned_cols=131  Identities=12%  Similarity=0.223  Sum_probs=94.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.++..++...|...++|+|+++.+++.|++++..      ....++.++.+|+...    +.++++|.
T Consensus       109 ~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~------~~~~~i~~~~~d~~~~----~~~~~fD~  178 (275)
T PRK09328        109 PLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH------GLGARVEFLQGDWFEP----LPGGRFDL  178 (275)
T ss_pred             CCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh------CCCCcEEEEEccccCc----CCCCceeE
Confidence            4589999999999999999999999999999999999999988751      2456899999997432    33578999


Q ss_pred             EEEeCCCCcccc--------c-cccc-c--------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcc
Q 025470          146 MFFLFPDPHFKE--------K-NHRR-R--------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFE  207 (252)
Q Consensus       146 i~~~fpdP~~k~--------~-h~kr-r--------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~  207 (252)
                      |+.|.|---...        + +... .        -....+++.+.++|+|||.+++.+.+ .....+.+.+...+ |.
T Consensus       179 Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~g~-~~~~~~~~~l~~~g-f~  256 (275)
T PRK09328        179 IVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEIGY-DQGEAVRALLAAAG-FA  256 (275)
T ss_pred             EEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEECc-hHHHHHHHHHHhCC-Cc
Confidence            999865210000        0 1000 0        11256888899999999999998765 34455666666543 44


Q ss_pred             c
Q 025470          208 A  208 (252)
Q Consensus       208 ~  208 (252)
                      .
T Consensus       257 ~  257 (275)
T PRK09328        257 D  257 (275)
T ss_pred             e
Confidence            3

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.45  E-value=1.1e-12  Score=109.11  Aligned_cols=102  Identities=12%  Similarity=0.085  Sum_probs=75.5

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|..+..+|++  +..|+|+|+|+.|++.+++++...      +++ +.+..+|+.. .+  + ++++|.|
T Consensus        32 ~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~------~~~-v~~~~~d~~~-~~--~-~~~fD~I   98 (195)
T TIGR00477        32 CKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARE------NLP-LRTDAYDINA-AA--L-NEDYDFI   98 (195)
T ss_pred             CcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHh------CCC-ceeEeccchh-cc--c-cCCCCEE
Confidence            47999999999999999987  578999999999999988766442      443 7777777642 22  3 4579999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +.+++-.+....      ....+++++.++|+|||.+++.+
T Consensus        99 ~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~lli~~  133 (195)
T TIGR00477        99 FSTVVFMFLQAG------RVPEIIANMQAHTRPGGYNLIVA  133 (195)
T ss_pred             EEecccccCCHH------HHHHHHHHHHHHhCCCcEEEEEE
Confidence            876543221100      12369999999999999966653

Part of a tellurite-reducing operon tehA and tehB

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.44  E-value=3.1e-12  Score=112.41  Aligned_cols=124  Identities=13%  Similarity=0.164  Sum_probs=91.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||+|||+|.+++.+|...|+..++|+|+|+.+++.|++++...      ++. ++.++++|+.+.    ++...+|.
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~------~~~~~v~~~~~d~~~~----~~~~~fDl  185 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKN------QLEHRVEFIQSNLFEP----LAGQKIDI  185 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECchhcc----CcCCCccE
Confidence            4899999999999999999999899999999999999999987654      554 499999997542    33447999


Q ss_pred             EEEeCCCCccc--------cccccc---------cccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          146 MFFLFPDPHFK--------EKNHRR---------RVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       146 i~~~fpdP~~k--------~~h~kr---------r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      |+.|.|--...        ..|..+         ......++..+.+.|+|||.+++.+.+ +....+.+.+.
T Consensus       186 IvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~-~q~~~~~~~~~  257 (284)
T TIGR00536       186 IVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGN-WQQKSLKELLR  257 (284)
T ss_pred             EEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECc-cHHHHHHHHHH
Confidence            99986521110        011111         012346889999999999999998864 34444555555

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.44  E-value=8.2e-13  Score=118.24  Aligned_cols=102  Identities=13%  Similarity=0.174  Sum_probs=81.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..++.+++|+|+++.|++.|+++.         ...|+.++.+|+.+ ++  ++++++|.
T Consensus       114 ~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~---------~~~~i~~i~gD~e~-lp--~~~~sFDv  181 (340)
T PLN02490        114 NLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE---------PLKECKIIEGDAED-LP--FPTDYADR  181 (340)
T ss_pred             CCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh---------hccCCeEEeccHHh-CC--CCCCceeE
Confidence            45899999999999999999888889999999999999887653         23578899999863 44  56789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.+...        ....++++.++|+|||.+++..
T Consensus       182 VIs~~~L~~~~d--------~~~~L~e~~rvLkPGG~LvIi~  215 (340)
T PLN02490        182 YVSAGSIEYWPD--------PQRGIKEAYRVLKIGGKACLIG  215 (340)
T ss_pred             EEEcChhhhCCC--------HHHHHHHHHHhcCCCcEEEEEE
Confidence            987643322211        1258999999999999998864

>PRK04457 spermidine synthase; Provisional

Probab=99.44  E-value=1.9e-12  Score=112.49  Aligned_cols=109  Identities=16%  Similarity=0.199  Sum_probs=85.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++..|+..+++||+++.+++.|++.+...     ...++++++.+|+.+.+...  +..+|.|
T Consensus        68 ~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~-----~~~~rv~v~~~Da~~~l~~~--~~~yD~I  140 (262)
T PRK04457         68 QHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELP-----ENGERFEVIEADGAEYIAVH--RHSTDVI  140 (262)
T ss_pred             CEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCC-----CCCCceEEEECCHHHHHHhC--CCCCCEE
Confidence            4799999999999999999999999999999999999998765321     12468999999998666532  4689999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++..-++-    .....+....|++.+.+.|+|||++++.
T Consensus       141 ~~D~~~~~----~~~~~l~t~efl~~~~~~L~pgGvlvin  176 (262)
T PRK04457        141 LVDGFDGE----GIIDALCTQPFFDDCRNALSSDGIFVVN  176 (262)
T ss_pred             EEeCCCCC----CCccccCcHHHHHHHHHhcCCCcEEEEE
Confidence            98642211    1112344678999999999999999984

>PRK00811 spermidine synthase; Provisional

Probab=99.43  E-value=1.8e-12  Score=113.89  Aligned_cols=130  Identities=14%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...||+||||.|..+..+++..+..++++||+++.+++.|++.+..... ....-++++++.+|+...+..  .++.+|.
T Consensus        77 p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~-~~~~d~rv~v~~~Da~~~l~~--~~~~yDv  153 (283)
T PRK00811         77 PKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAG-GAYDDPRVELVIGDGIKFVAE--TENSFDV  153 (283)
T ss_pred             CCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhcc-ccccCCceEEEECchHHHHhh--CCCcccE
Confidence            3479999999999999998765566899999999999999987754310 001246899999999876653  4678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLEN  202 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~  202 (252)
                      |++..++|+...    ..+.+..|++.+.+.|+|||.+++.+...    +....+.+.+.+
T Consensus       154 Ii~D~~dp~~~~----~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~~~~~~~i~~tl~~  210 (283)
T PRK00811        154 IIVDSTDPVGPA----EGLFTKEFYENCKRALKEDGIFVAQSGSPFYQADEIKDMHRKLKE  210 (283)
T ss_pred             EEECCCCCCCch----hhhhHHHHHHHHHHhcCCCcEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999988887321    23456789999999999999999876432    334444445543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.42  E-value=1.4e-12  Score=122.34  Aligned_cols=103  Identities=18%  Similarity=0.370  Sum_probs=80.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+.. ++.++|+|+|+.+++.|+++...       ...++.|+.+|+.. ++  ++++++|.
T Consensus       267 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~-------~~~~v~~~~~d~~~-~~--~~~~~fD~  335 (475)
T PLN02336        267 GQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIG-------RKCSVEFEVADCTK-KT--YPDNSFDV  335 (475)
T ss_pred             CCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhc-------CCCceEEEEcCccc-CC--CCCCCEEE
Confidence            4589999999999999999876 67999999999999988765421       23479999999763 32  56788999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+....-.|...        ...++++++++|||||.|++.+
T Consensus       336 I~s~~~l~h~~d--------~~~~l~~~~r~LkpgG~l~i~~  369 (475)
T PLN02336        336 IYSRDTILHIQD--------KPALFRSFFKWLKPGGKVLISD  369 (475)
T ss_pred             EEECCcccccCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence            987543322211        1269999999999999999864

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.42  E-value=2e-12  Score=116.19  Aligned_cols=119  Identities=17%  Similarity=0.205  Sum_probs=88.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++++|...++|+|+++.|++.|+.++...      ++. ..++.+|+..   . + ++.+|.|
T Consensus       198 g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n------~l~-~~~~~~D~~~---~-~-~~~fDlI  265 (342)
T PRK09489        198 GKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN------GLE-GEVFASNVFS---D-I-KGRFDMI  265 (342)
T ss_pred             CeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCC-CEEEEccccc---c-c-CCCccEE
Confidence            4799999999999999999999999999999999999999887653      343 5677777642   1 2 5789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHH
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCL  200 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~  200 (252)
                      ++|+|-.+.....   .-....+++.+.+.|||||.++++.+. ..|...+.+.+
T Consensus       266 vsNPPFH~g~~~~---~~~~~~~i~~a~~~LkpgG~L~iVan~~l~y~~~l~~~F  317 (342)
T PRK09489        266 ISNPPFHDGIQTS---LDAAQTLIRGAVRHLNSGGELRIVANAFLPYPDLLDETF  317 (342)
T ss_pred             EECCCccCCcccc---HHHHHHHHHHHHHhcCcCCEEEEEEeCCCChHHHHHHHc
Confidence            9997753311100   012247999999999999999998864 34555444443

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.42  E-value=3.5e-12  Score=113.92  Aligned_cols=104  Identities=17%  Similarity=0.146  Sum_probs=76.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.++..++...+. .|+|||+|+.++..++......     ....|+.++.+|+. .++  + ++++|.
T Consensus       123 g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~-----~~~~~i~~~~~d~e-~lp--~-~~~FD~  192 (322)
T PRK15068        123 GRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLL-----GNDQRAHLLPLGIE-QLP--A-LKAFDT  192 (322)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhc-----CCCCCeEEEeCCHH-HCC--C-cCCcCE
Confidence            458999999999999999999765 5999999999886543321111     12357999999986 354  3 678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++..--.+..        --..+++++++.|+|||.+++.+
T Consensus       193 V~s~~vl~H~~--------dp~~~L~~l~~~LkpGG~lvl~~  226 (322)
T PRK15068        193 VFSMGVLYHRR--------SPLDHLKQLKDQLVPGGELVLET  226 (322)
T ss_pred             EEECChhhccC--------CHHHHHHHHHHhcCCCcEEEEEE
Confidence            98743211110        11369999999999999999865

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.42  E-value=2.8e-12  Score=110.68  Aligned_cols=111  Identities=18%  Similarity=0.166  Sum_probs=81.6

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ....|||||||+|.+++.+++..+ ..++|+|+++.+++.|++++...      ++ .++.+..+|           .++
T Consensus       119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~n~~~~------~~~~~~~~~~~~-----------~~f  180 (250)
T PRK00517        119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARENAELN------GVELNVYLPQGD-----------LKA  180 (250)
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHHHHHHc------CCCceEEEccCC-----------CCc
Confidence            356899999999999988777644 36999999999999999887542      33 223322221           268


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |.|+.|.....           ...++.++.++|||||.+++.....+....+.+.+..++
T Consensus       181 D~Vvani~~~~-----------~~~l~~~~~~~LkpgG~lilsgi~~~~~~~v~~~l~~~G  230 (250)
T PRK00517        181 DVIVANILANP-----------LLELAPDLARLLKPGGRLILSGILEEQADEVLEAYEEAG  230 (250)
T ss_pred             CEEEEcCcHHH-----------HHHHHHHHHHhcCCCcEEEEEECcHhhHHHHHHHHHHCC
Confidence            99988764222           135889999999999999998766666677777777665

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.42  E-value=1.2e-12  Score=114.12  Aligned_cols=106  Identities=25%  Similarity=0.414  Sum_probs=75.2

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..|||||||.|.++..+|+++ +++++||.+|++..+.|++++...      ++ .++.+...|..+ ++     ..+
T Consensus        62 ~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~------gl~~~v~v~~~D~~~-~~-----~~f  128 (273)
T PF02353_consen   62 PGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREA------GLEDRVEVRLQDYRD-LP-----GKF  128 (273)
T ss_dssp             TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCS------TSSSTEEEEES-GGG---------S-
T ss_pred             CCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEEeeccc-cC-----CCC
Confidence            46699999999999999999998 889999999999999999887643      55 468999999763 33     289


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |.|+..-..-....+      -.+.+++.+.++|||||++++.+-.
T Consensus       129 D~IvSi~~~Ehvg~~------~~~~~f~~~~~~LkpgG~~~lq~i~  168 (273)
T PF02353_consen  129 DRIVSIEMFEHVGRK------NYPAFFRKISRLLKPGGRLVLQTIT  168 (273)
T ss_dssp             SEEEEESEGGGTCGG------GHHHHHHHHHHHSETTEEEEEEEEE
T ss_pred             CEEEEEechhhcChh------HHHHHHHHHHHhcCCCcEEEEEecc
Confidence            998865322221111      1246999999999999999986543

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.41  E-value=2.4e-12  Score=115.42  Aligned_cols=114  Identities=18%  Similarity=0.219  Sum_probs=86.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|.+++.++..  +..++|+|+++.|++.|+.++...      +..++.++++|+.. ++  +.++++|.
T Consensus       183 g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~------g~~~i~~~~~D~~~-l~--~~~~~~D~  251 (329)
T TIGR01177       183 GDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHY------GIEDFFVKRGDATK-LP--LSSESVDA  251 (329)
T ss_pred             cCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHh------CCCCCeEEecchhc-CC--cccCCCCE
Confidence            458999999999999987775  678999999999999999887654      67778999999874 54  44679999


Q ss_pred             EEEeCCCCccccc-cccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEK-NHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~-h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |+.+.|--..... .+...-....+++++.++|+|||++++.+...
T Consensus       252 Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~  297 (329)
T TIGR01177       252 IATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR  297 (329)
T ss_pred             EEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence            9998653211100 00000124679999999999999998887553

This family is found exclusively in the Archaea.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.41  E-value=6.1e-12  Score=114.72  Aligned_cols=127  Identities=13%  Similarity=0.152  Sum_probs=94.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.+++.++...|+.+++|+|+|+.|++.|++++...      +. ++.++++|+.+..  ....+.+|.
T Consensus       252 ~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~------g~-rV~fi~gDl~e~~--l~~~~~FDL  322 (423)
T PRK14966        252 NGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL------GA-RVEFAHGSWFDTD--MPSEGKWDI  322 (423)
T ss_pred             CCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CC-cEEEEEcchhccc--cccCCCccE
Confidence            34899999999999999999999999999999999999999987653      33 7999999975321  112457999


Q ss_pred             EEEeCCCCcccc----------ccc---------cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKE----------KNH---------RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~----------~h~---------krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |++|.|  +...          ++.         ........+++.+.+.|+|||.+++.... +..+.+.+.+...+
T Consensus       323 IVSNPP--YI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEiG~-~Q~e~V~~ll~~~G  397 (423)
T PRK14966        323 IVSNPP--YIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEHGF-DQGAAVRGVLAENG  397 (423)
T ss_pred             EEECCC--CCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEECc-cHHHHHHHHHHHCC
Confidence            999875  2111          011         01112346788888999999999987765 56667777777654

>PRK08317 hypothetical protein; Provisional

Probab=99.41  E-value=3.2e-12  Score=108.15  Aligned_cols=104  Identities=26%  Similarity=0.387  Sum_probs=81.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..++... |...++|+|+++.+++.|+++..       ....++.++.+|+.. ++  ++++.+|
T Consensus        20 ~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-------~~~~~~~~~~~d~~~-~~--~~~~~~D   89 (241)
T PRK08317         20 GDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-------GLGPNVEFVRGDADG-LP--FPDGSFD   89 (241)
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-------CCCCceEEEeccccc-CC--CCCCCce
Confidence            4589999999999999999987 77899999999999988876521       245689999999863 33  5578899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-.+...        ...+++++.++|+|||.+++..
T Consensus        90 ~v~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~  124 (241)
T PRK08317         90 AVRSDRVLQHLED--------PARALAEIARVLRPGGRVVVLD  124 (241)
T ss_pred             EEEEechhhccCC--------HHHHHHHHHHHhcCCcEEEEEe
Confidence            9998653322211        1359999999999999998864

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.40  E-value=4.2e-12  Score=111.23  Aligned_cols=126  Identities=17%  Similarity=0.305  Sum_probs=96.5

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .|||||||+|..++.+|...|+++|+|+|+|+.+++.|+.|+...      ++.|+.++++|..+.+     .+.+|.|+
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~------~l~~~~~~~~dlf~~~-----~~~fDlIV  181 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERN------GLVRVLVVQSDLFEPL-----RGKFDLIV  181 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHc------CCccEEEEeeeccccc-----CCceeEEE
Confidence            699999999999999999999999999999999999999988664      6677888888764322     23899999


Q ss_pred             EeCCCCccccc----------c---------ccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcc
Q 025470          148 FLFPDPHFKEK----------N---------HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFE  207 (252)
Q Consensus       148 ~~fpdP~~k~~----------h---------~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~  207 (252)
                      .|.|  +....          |         ....-+...++..+.+.|+|||.+.+.... +..+.+.+.+...+.|.
T Consensus       182 sNPP--Yip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g~-~q~~~v~~~~~~~~~~~  257 (280)
T COG2890         182 SNPP--YIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIGL-TQGEAVKALFEDTGFFE  257 (280)
T ss_pred             eCCC--CCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEECC-CcHHHHHHHHHhcCCce
Confidence            9975  11111          1         122335567999999999999999998763 34666777777766443

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.40  E-value=9.1e-12  Score=115.62  Aligned_cols=135  Identities=17%  Similarity=0.226  Sum_probs=96.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc--CCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY--FEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~--~~~~s  142 (252)
                      +..|||+|||+|..+..+|+.. +...++|+|+++.+++.+++++...      ++.||.++.+|+.. +...  +..++
T Consensus       253 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~------g~~~v~~~~~D~~~-~~~~~~~~~~~  325 (434)
T PRK14901        253 GEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL------GLKSIKILAADSRN-LLELKPQWRGY  325 (434)
T ss_pred             cCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc------CCCeEEEEeCChhh-ccccccccccc
Confidence            5689999999999999999985 3568999999999999999988664      78899999999874 3321  23578


Q ss_pred             ccEEEEeCCCC----ccccccccccc----------cCHHHHHHHHHhhcCCcEEEEEe--Cch-HHHHHHHHHHhcCCC
Q 025470          143 LTKMFFLFPDP----HFKEKNHRRRV----------ISPHLLDEYAYVLGVGGIIYTIT--DVE-ELGDWMRSCLENHPM  205 (252)
Q Consensus       143 ~d~i~~~fpdP----~~k~~h~krr~----------~~~~~l~~~~~~LkpgG~l~~~t--d~~-~~~~~~~~~~~~~~~  205 (252)
                      +|.|+++-|.-    +.+....+.+.          .+..+|..+.++|||||+|+.+|  -.. +--.-+...+..+|.
T Consensus       326 fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~  405 (434)
T PRK14901        326 FDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD  405 (434)
T ss_pred             CCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence            99999976631    11111111111          25689999999999999998776  222 222333344456666


Q ss_pred             cc
Q 025470          206 FE  207 (252)
Q Consensus       206 ~~  207 (252)
                      |+
T Consensus       406 ~~  407 (434)
T PRK14901        406 WK  407 (434)
T ss_pred             cE
Confidence            65

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.39  E-value=6.8e-12  Score=116.81  Aligned_cols=136  Identities=20%  Similarity=0.276  Sum_probs=94.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|..+..+|+.. +...++|+|+++.+++.+++++...      ++.|+.++++|+.. +...++ +++|
T Consensus       251 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~-~~~~~~-~~fD  322 (444)
T PRK14902        251 GDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL------GLTNIETKALDARK-VHEKFA-EKFD  322 (444)
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCCccc-ccchhc-ccCC
Confidence            4589999999999999999985 6779999999999999999887654      77789999999874 322233 6899


Q ss_pred             EEEEeCCCCccc--ccccc-------cc-----ccCHHHHHHHHHhhcCCcEEEEEeCc--hHHHHHHHH-HHhcCCCcc
Q 025470          145 KMFFLFPDPHFK--EKNHR-------RR-----VISPHLLDEYAYVLGVGGIIYTITDV--EELGDWMRS-CLENHPMFE  207 (252)
Q Consensus       145 ~i~~~fpdP~~k--~~h~k-------rr-----~~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~-~~~~~~~~~  207 (252)
                      .|+++.|..-..  .++..       ..     -.+..+|+.+.++|||||.++..|-.  .+-.+...+ .+..++.|+
T Consensus       323 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~~~~  402 (444)
T PRK14902        323 KILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHPEFE  402 (444)
T ss_pred             EEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCCCcE
Confidence            999986622100  00000       00     02456899999999999999976532  222233333 345555565


Q ss_pred             cc
Q 025470          208 AL  209 (252)
Q Consensus       208 ~~  209 (252)
                      .+
T Consensus       403 ~~  404 (444)
T PRK14902        403 LV  404 (444)
T ss_pred             Ee
Confidence            44

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.38  E-value=1.7e-13  Score=116.17  Aligned_cols=111  Identities=19%  Similarity=0.325  Sum_probs=84.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc----cEEEEeCCcccccCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ----NISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~----nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ..|||+|||.|.++..||+.  +.+|+|||++++||+.|+.+ +..   ......    .+.+.+.|+.. +.     +.
T Consensus        91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h-~~~---dP~~~~~~~y~l~~~~~~~E~-~~-----~~  158 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEH-KKM---DPVLEGAIAYRLEYEDTDVEG-LT-----GK  158 (282)
T ss_pred             ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHh-hhc---Cchhccccceeeehhhcchhh-cc-----cc
Confidence            35999999999999999999  67999999999999999887 332   111112    36677777753 32     23


Q ss_pred             ccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          143 LTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       143 ~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      ||.|.+     +.-||.             .|++.+.+.|||||.+++.|.++....|....+.+
T Consensus       159 fDaVvcsevleHV~dp~-------------~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~~  210 (282)
T KOG1270|consen  159 FDAVVCSEVLEHVKDPQ-------------EFLNCLSALLKPNGRLFITTINRTILSFAGTIFLA  210 (282)
T ss_pred             cceeeeHHHHHHHhCHH-------------HHHHHHHHHhCCCCceEeeehhhhHHHhhccccHH
Confidence            787775     344554             69999999999999999999998877666655543

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.38  E-value=4.2e-12  Score=111.72  Aligned_cols=102  Identities=14%  Similarity=0.151  Sum_probs=77.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|..+..+|+.  +..|+|+|+|+.+++.+++++...      ++ ++.+...|+.. ..  + ++++|.|
T Consensus       122 ~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~------~l-~v~~~~~D~~~-~~--~-~~~fD~I  188 (287)
T PRK12335        122 GKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKE------NL-NIRTGLYDINS-AS--I-QEEYDFI  188 (287)
T ss_pred             CCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEechhc-cc--c-cCCccEE
Confidence            38999999999999999997  578999999999999998776543      55 78998888753 22  2 6789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +.++.-.+....      ....+++++.++|+|||.+++..
T Consensus       189 ~~~~vl~~l~~~------~~~~~l~~~~~~LkpgG~~l~v~  223 (287)
T PRK12335        189 LSTVVLMFLNRE------RIPAIIKNMQEHTNPGGYNLIVC  223 (287)
T ss_pred             EEcchhhhCCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            876532221100      12369999999999999976653

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=1e-11  Score=108.14  Aligned_cols=122  Identities=16%  Similarity=0.251  Sum_probs=92.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||.|.+++.+|+.+|...++-+|++..+++.|+.++..      ++.+|..+...|..+.    . .+.+|.
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~------N~~~~~~v~~s~~~~~----v-~~kfd~  227 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAA------NGVENTEVWASNLYEP----V-EGKFDL  227 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHH------cCCCccEEEEeccccc----c-cccccE
Confidence            3489999999999999999999999999999999999999999866      3677776777776432    2 238999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHHh
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCLE  201 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~~  201 (252)
                      |+.|.|-.   ..+.--.-+..++++...+.|++||.|.|+..- ..|...|.+.|.
T Consensus       228 IisNPPfh---~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~y~~~L~~~Fg  281 (300)
T COG2813         228 IISNPPFH---AGKAVVHSLAQEIIAAAARHLKPGGELWIVANRHLPYEKKLKELFG  281 (300)
T ss_pred             EEeCCCcc---CCcchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCChHHHHHHhcC
Confidence            99987642   222111111237999999999999999999863 355555555553

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.37  E-value=7.9e-12  Score=115.81  Aligned_cols=136  Identities=17%  Similarity=0.277  Sum_probs=94.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|..+..+++..++..++|+|+++.+++.+++++...      ++. +.++++|+.. +...++.+++|.
T Consensus       245 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~------g~~-~~~~~~D~~~-~~~~~~~~~fD~  316 (427)
T PRK10901        245 GERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL------GLK-ATVIVGDARD-PAQWWDGQPFDR  316 (427)
T ss_pred             CCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc------CCC-eEEEEcCccc-chhhcccCCCCE
Confidence            56899999999999999999987778999999999999999887653      443 7899999864 333345678999


Q ss_pred             EEEeCCCCccc--ccc--ccc----------cccCHHHHHHHHHhhcCCcEEEEEeC--chHHH-HHHHHHHhcCCCccc
Q 025470          146 MFFLFPDPHFK--EKN--HRR----------RVISPHLLDEYAYVLGVGGIIYTITD--VEELG-DWMRSCLENHPMFEA  208 (252)
Q Consensus       146 i~~~fpdP~~k--~~h--~kr----------r~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~-~~~~~~~~~~~~~~~  208 (252)
                      |+++.|..-..  .++  .+.          .-.+..++..+.++|||||.+++.|-  ...-. +.+...+..++.|+.
T Consensus       317 Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~~~~  396 (427)
T PRK10901        317 ILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPDAEL  396 (427)
T ss_pred             EEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCCCEE
Confidence            99987643100  000  000          01245799999999999999998773  12122 222334445555543


Q ss_pred             c
Q 025470          209 L  209 (252)
Q Consensus       209 ~  209 (252)
                      +
T Consensus       397 ~  397 (427)
T PRK10901        397 L  397 (427)
T ss_pred             e
Confidence            3

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.37  E-value=1e-11  Score=104.33  Aligned_cols=98  Identities=19%  Similarity=0.195  Sum_probs=79.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++...  ..++|+|+++.+++.|++++...      ++.|+.++.+|+.+.+   ...+.+|.
T Consensus        79 ~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~---~~~~~fD~  147 (212)
T PRK00312         79 GDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQL------GLHNVSVRHGDGWKGW---PAYAPFDR  147 (212)
T ss_pred             CCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHC------CCCceEEEECCcccCC---CcCCCcCE
Confidence            4589999999999999888885  37999999999999999887653      7788999999975322   22478999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++..+.++              +.+.+.+.|+|||.+++...
T Consensus       148 I~~~~~~~~--------------~~~~l~~~L~~gG~lv~~~~  176 (212)
T PRK00312        148 ILVTAAAPE--------------IPRALLEQLKEGGILVAPVG  176 (212)
T ss_pred             EEEccCchh--------------hhHHHHHhcCCCcEEEEEEc
Confidence            998764332              55678899999999998764

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.37  E-value=1.5e-11  Score=108.37  Aligned_cols=116  Identities=16%  Similarity=0.170  Sum_probs=87.3

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..|||+|||+|.+++.+++.. ...++|+|+++.+++.|++++...      ++. ++.+...+..   .  ..++.+
T Consensus       159 ~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~~n------~~~~~~~~~~~~~~---~--~~~~~f  226 (288)
T TIGR00406       159 KDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAELN------QVSDRLQVKLIYLE---Q--PIEGKA  226 (288)
T ss_pred             CCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHHHc------CCCcceEEEecccc---c--ccCCCc
Confidence            35699999999999999888763 458999999999999999887543      333 4666666532   1  235689


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      |.|+.|+....           ...++..+.++|||||.|++..-..+....+.+.+...
T Consensus       227 DlVvan~~~~~-----------l~~ll~~~~~~LkpgG~li~sgi~~~~~~~v~~~~~~~  275 (288)
T TIGR00406       227 DVIVANILAEV-----------IKELYPQFSRLVKPGGWLILSGILETQAQSVCDAYEQG  275 (288)
T ss_pred             eEEEEecCHHH-----------HHHHHHHHHHHcCCCcEEEEEeCcHhHHHHHHHHHHcc
Confidence            99999864322           13589999999999999999876666667777777654

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PLN03075 nicotianamine synthase; Provisional

Probab=99.36  E-value=9.4e-12  Score=108.99  Aligned_cols=107  Identities=9%  Similarity=0.153  Sum_probs=79.8

Q ss_pred             CceEEEEcCcccHH--HHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGL--LISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~--~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...|+|||||.|.+  ++.++...|+..++|+|+++++++.|++.+...     .++ ++++|..+|+.+ +..  ..+.
T Consensus       124 p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~-----~gL~~rV~F~~~Da~~-~~~--~l~~  195 (296)
T PLN03075        124 PTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD-----PDLSKRMFFHTADVMD-VTE--SLKE  195 (296)
T ss_pred             CCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc-----cCccCCcEEEECchhh-ccc--ccCC
Confidence            45899999998844  344455689999999999999999999877431     245 459999999875 221  2467


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|++.---.|.+..+       ..+++.+++.|+|||.+++.+
T Consensus       196 FDlVF~~ALi~~dk~~k-------~~vL~~l~~~LkPGG~Lvlr~  233 (296)
T PLN03075        196 YDVVFLAALVGMDKEEK-------VKVIEHLGKHMAPGALLMLRS  233 (296)
T ss_pred             cCEEEEecccccccccH-------HHHHHHHHHhcCCCcEEEEec
Confidence            99999873223322222       269999999999999999987

>TIGR00452 methyltransferase, putative

Probab=99.36  E-value=5.8e-12  Score=111.85  Aligned_cols=104  Identities=13%  Similarity=0.056  Sum_probs=74.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.++..++...+. .++|||.|+.|+..+.......     ....++.+..+++.+ ++.   ..+||.
T Consensus       122 g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~-----~~~~~v~~~~~~ie~-lp~---~~~FD~  191 (314)
T TIGR00452       122 GRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLL-----DNDKRAILEPLGIEQ-LHE---LYAFDT  191 (314)
T ss_pred             CCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHh-----ccCCCeEEEECCHHH-CCC---CCCcCE
Confidence            458999999999999999988653 7999999999986643321111     123578888888763 442   358999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.|..        --..+|++++++|+|||.|++.|
T Consensus       192 V~s~gvL~H~~--------dp~~~L~el~r~LkpGG~Lvlet  225 (314)
T TIGR00452       192 VFSMGVLYHRK--------SPLEHLKQLKHQLVIKGELVLET  225 (314)
T ss_pred             EEEcchhhccC--------CHHHHHHHHHHhcCCCCEEEEEE
Confidence            98764322211        01269999999999999999875

Known examples to date are restricted to the proteobacteria.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.36  E-value=2e-11  Score=103.04  Aligned_cols=153  Identities=15%  Similarity=0.145  Sum_probs=98.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..  ..++|+|+++.+++.++.++...      +..++.+...|+.+....  .++.+|.
T Consensus        46 ~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~~~~--~~~~~D~  115 (224)
T TIGR01983        46 GLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKD------PLLKIEYRCTSVEDLAEK--GAKSFDV  115 (224)
T ss_pred             CCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHHhhcC--CCCCccE
Confidence            4589999999999999998874  46999999999999888776542      444789999998643221  1478999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS  225 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  225 (252)
                      |+++..-.+...        ...+++.+.++|+|||.+++.+.+.+...++...+.....+...+..    .........
T Consensus       116 i~~~~~l~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~  183 (224)
T TIGR01983       116 VTCMEVLEHVPD--------PQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVGAEYILRIVPKG----THDWEKFIK  183 (224)
T ss_pred             EEehhHHHhCCC--------HHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHhhhhhhhcCCCC----cCChhhcCC
Confidence            987532111110        12599999999999999998876554444443333222112111111    000111123


Q ss_pred             CCHHHHHHHHcCCCe
Q 025470          226 ATEEGQKVARNGGQT  240 (252)
Q Consensus       226 ~t~~e~~~~~~G~~i  240 (252)
                      ..+..+.....|.+|
T Consensus       184 ~~~l~~~l~~~G~~i  198 (224)
T TIGR01983       184 PSELTSWLESAGLRV  198 (224)
T ss_pred             HHHHHHHHHHcCCee
Confidence            345777888888876

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.35  E-value=8.2e-12  Score=108.60  Aligned_cols=132  Identities=17%  Similarity=0.179  Sum_probs=93.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|..+..+|+... ...++|+|+++.+++.+++++...      ++.|+.++..|+.. +..  ..+.+|
T Consensus        72 g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~------g~~~v~~~~~D~~~-~~~--~~~~fD  142 (264)
T TIGR00446        72 PERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC------GVLNVAVTNFDGRV-FGA--AVPKFD  142 (264)
T ss_pred             cCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEecCCHHH-hhh--hccCCC
Confidence            45899999999999999999864 358999999999999999988664      77899999999863 332  235699


Q ss_pred             EEEEeCCCCc---------ccccccccc-----ccCHHHHHHHHHhhcCCcEEEEEeC--chHHHHHHHHHH-hcCCCc
Q 025470          145 KMFFLFPDPH---------FKEKNHRRR-----VISPHLLDEYAYVLGVGGIIYTITD--VEELGDWMRSCL-ENHPMF  206 (252)
Q Consensus       145 ~i~~~fpdP~---------~k~~h~krr-----~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~-~~~~~~  206 (252)
                      .|+++-|..-         .+.....+.     ..+..+|+.+.+.|||||+|+..|=  ..+--+...+.+ ..++.+
T Consensus       143 ~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~~~Ene~vv~~~l~~~~~~  221 (264)
T TIGR00446       143 AILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLEPEENEAVVDYLLEKRPDV  221 (264)
T ss_pred             EEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChHHHHHHHHHHHHhCCCc
Confidence            9999766321         110011111     1346799999999999999998863  233334444444 334444

>PRK05785 hypothetical protein; Provisional

Probab=99.35  E-value=9e-12  Score=105.96  Aligned_cols=94  Identities=13%  Similarity=0.171  Sum_probs=72.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.. +..++|+|+|++|++.|+.+              ..++++|+. .++  ++++++|.
T Consensus        52 ~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~--------------~~~~~~d~~-~lp--~~d~sfD~  113 (226)
T PRK05785         52 PKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVA--------------DDKVVGSFE-ALP--FRDKSFDV  113 (226)
T ss_pred             CCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhc--------------cceEEechh-hCC--CCCCCEEE
Confidence            3589999999999999999987 57899999999999887542              135678886 455  77899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYT  185 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~  185 (252)
                      |++.+.-.+...        ....+++++|+|||.+ .+.+
T Consensus       114 v~~~~~l~~~~d--------~~~~l~e~~RvLkp~~~ile~  146 (226)
T PRK05785        114 VMSSFALHASDN--------IEKVIAEFTRVSRKQVGFIAM  146 (226)
T ss_pred             EEecChhhccCC--------HHHHHHHHHHHhcCceEEEEe
Confidence            998775333211        2369999999999953 4444

>PLN02366 spermidine synthase

Probab=99.35  E-value=1.7e-11  Score=108.56  Aligned_cols=129  Identities=15%  Similarity=0.161  Sum_probs=96.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...||+||||.|..+..+++..+...++.||+++.+++.|++.+....  ....-++++++.+|+...+.. .+++.+|.
T Consensus        92 pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~--~~~~dpRv~vi~~Da~~~l~~-~~~~~yDv  168 (308)
T PLN02366         92 PKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLA--VGFDDPRVNLHIGDGVEFLKN-APEGTYDA  168 (308)
T ss_pred             CCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhc--cccCCCceEEEEChHHHHHhh-ccCCCCCE
Confidence            358999999999999999876444689999999999999988765431  011246899999999766543 34568999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHh
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLE  201 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~  201 (252)
                      |++..++|+..    ...+....|++.+.+.|+|||.+++.+.+    .+.+..+.+.+.
T Consensus       169 Ii~D~~dp~~~----~~~L~t~ef~~~~~~~L~pgGvlv~q~~s~~~~~~~~~~i~~tl~  224 (308)
T PLN02366        169 IIVDSSDPVGP----AQELFEKPFFESVARALRPGGVVCTQAESMWLHMDLIEDLIAICR  224 (308)
T ss_pred             EEEcCCCCCCc----hhhhhHHHHHHHHHHhcCCCcEEEECcCCcccchHHHHHHHHHHH
Confidence            99999998732    23456678999999999999999886654    333344444444

>PRK01581 speE spermidine synthase; Validated

Probab=99.34  E-value=1.1e-11  Score=111.02  Aligned_cols=131  Identities=12%  Similarity=0.133  Sum_probs=96.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHH--HHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKER--ILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ..||+||||.|..+..+.+..+...+++||+++.+++.|+..  +..... ....-++++++.+|+.+.+..  ..+.+|
T Consensus       152 krVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~-~~~~DpRV~vvi~Da~~fL~~--~~~~YD  228 (374)
T PRK01581        152 KRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNK-SAFFDNRVNVHVCDAKEFLSS--PSSLYD  228 (374)
T ss_pred             CEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhcc-ccCCCCceEEEECcHHHHHHh--cCCCcc
Confidence            489999999999888888765567999999999999998852  111100 011346899999999876653  356899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH----HHHHHHHhcC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG----DWMRSCLENH  203 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~----~~~~~~~~~~  203 (252)
                      .|++.+|||...   .-.++...+|++.+.+.|+|||.+++.+....+.    ..+...+...
T Consensus       229 VIIvDl~DP~~~---~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~~~~~~~i~~tL~~a  288 (374)
T PRK01581        229 VIIIDFPDPATE---LLSTLYTSELFARIATFLTEDGAFVCQSNSPADAPLVYWSIGNTIEHA  288 (374)
T ss_pred             EEEEcCCCcccc---chhhhhHHHHHHHHHHhcCCCcEEEEecCChhhhHHHHHHHHHHHHHh
Confidence            999999998632   2245566789999999999999999987655433    3344455443

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.34  E-value=1.7e-11  Score=115.59  Aligned_cols=127  Identities=16%  Similarity=0.184  Sum_probs=93.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||||||+|.+++.+|...|+..++|+|+|+.+++.|++++...      ++ .++.++++|+.+.    ++.+.+|.
T Consensus       140 ~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~------~l~~~v~~~~~D~~~~----~~~~~fDl  209 (506)
T PRK01544        140 LNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKY------EVTDRIQIIHSNWFEN----IEKQKFDF  209 (506)
T ss_pred             CEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc------CCccceeeeecchhhh----CcCCCccE
Confidence            4799999999999999999999999999999999999999887553      44 4799999997532    34568999


Q ss_pred             EEEeCCCCcccc---------cccc---------ccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKE---------KNHR---------RRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~---------~h~k---------rr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |++|.|=-....         .+..         ..-....+++.+.++|+|||.+++.+.. ...+.+.+.+...+
T Consensus       210 IvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lEig~-~q~~~v~~~~~~~g  285 (506)
T PRK01544        210 IVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILEIGF-KQEEAVTQIFLDHG  285 (506)
T ss_pred             EEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEEECC-chHHHHHHHHHhcC
Confidence            999865111000         0110         1112345788889999999999987643 45566666666554

>PHA03411 putative methyltransferase; Provisional

Probab=99.33  E-value=1.3e-11  Score=106.85  Aligned_cols=113  Identities=9%  Similarity=0.072  Sum_probs=85.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.++.+.+...++|+|+++.|++.|+++           .+++.++++|+.+.    .....+|.
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n-----------~~~v~~v~~D~~e~----~~~~kFDl  129 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL-----------LPEAEWITSDVFEF----ESNEKFDV  129 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----------CcCCEEEECchhhh----cccCCCcE
Confidence            3489999999999999999987778999999999999887653           34788999998742    23568999


Q ss_pred             EEEeCCCCccccccccc------------cccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025470          146 MFFLFPDPHFKEKNHRR------------RVISPHLLDEYAYVLGVGGIIYTITDVEELG  193 (252)
Q Consensus       146 i~~~fpdP~~k~~h~kr------------r~~~~~~l~~~~~~LkpgG~l~~~td~~~~~  193 (252)
                      |+.|.|--+......+.            .+.-..++.....+|+|+|.+.++.+...++
T Consensus       130 IIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y  189 (279)
T PHA03411        130 VISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYY  189 (279)
T ss_pred             EEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEEEeccccc
Confidence            99987644322111111            1123578999999999999999987776654

>TIGR03438 probable methyltransferase

Probab=99.33  E-value=1.7e-11  Score=108.56  Aligned_cols=111  Identities=11%  Similarity=0.097  Sum_probs=76.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc--c
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ--L  143 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s--~  143 (252)
                      ..|||+|||+|..+..|++..+ ...|+|||+|++|++.|.+++...     ...-++.++++|+.+.++  ++...  -
T Consensus        65 ~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~-----~p~~~v~~i~gD~~~~~~--~~~~~~~~  137 (301)
T TIGR03438        65 CELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAAD-----YPQLEVHGICADFTQPLA--LPPEPAAG  137 (301)
T ss_pred             CeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhh-----CCCceEEEEEEcccchhh--hhcccccC
Confidence            4799999999999999999976 578999999999999998876542     112347788999864332  11111  1


Q ss_pred             cEEEEe--CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          144 TKMFFL--FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       144 d~i~~~--fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      +.+++.  .+..+...      --...+|+.++++|+|||.|+|..|..
T Consensus       138 ~~~~~~~gs~~~~~~~------~e~~~~L~~i~~~L~pgG~~lig~d~~  180 (301)
T TIGR03438       138 RRLGFFPGSTIGNFTP------EEAVAFLRRIRQLLGPGGGLLIGVDLV  180 (301)
T ss_pred             CeEEEEecccccCCCH------HHHHHHHHHHHHhcCCCCEEEEeccCC
Confidence            232222  22222110      012369999999999999999977643

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=99.32  E-value=2.1e-11  Score=112.97  Aligned_cols=136  Identities=13%  Similarity=0.216  Sum_probs=97.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|..+..+|... +...++|+|+++.+++.+++++...      ++.|+.++.+|+.. ++. +.+++||
T Consensus       238 g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~------g~~~v~~~~~Da~~-l~~-~~~~~fD  309 (431)
T PRK14903        238 GLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL------KLSSIEIKIADAER-LTE-YVQDTFD  309 (431)
T ss_pred             CCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCeEEEEECchhh-hhh-hhhccCC
Confidence            4589999999999999999985 4678999999999999999988664      77889999999874 432 2356899


Q ss_pred             EEEEeCCCCccc--ccc--cccc----------ccCHHHHHHHHHhhcCCcEEEEEeC--chHHHHHHHHHH-hcCCCcc
Q 025470          145 KMFFLFPDPHFK--EKN--HRRR----------VISPHLLDEYAYVLGVGGIIYTITD--VEELGDWMRSCL-ENHPMFE  207 (252)
Q Consensus       145 ~i~~~fpdP~~k--~~h--~krr----------~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~-~~~~~~~  207 (252)
                      .|++.-|.--..  .++  .+.+          -.+..+|..+.+.|||||.++++|=  ..+-.+...+.+ ..+|.|.
T Consensus       310 ~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~~~  389 (431)
T PRK14903        310 RILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKDAE  389 (431)
T ss_pred             EEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCCcE
Confidence            999976642110  000  0111          1356789999999999999998763  233344444443 4466665


Q ss_pred             cc
Q 025470          208 AL  209 (252)
Q Consensus       208 ~~  209 (252)
                      .+
T Consensus       390 ~~  391 (431)
T PRK14903        390 VI  391 (431)
T ss_pred             Ee
Confidence            33

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.32  E-value=2.2e-11  Score=103.38  Aligned_cols=106  Identities=21%  Similarity=0.344  Sum_probs=81.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..++...| ...++|+|+++.+++.+++++...     ....++.++.+|+.. ++  +.++++|
T Consensus        52 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~-~~--~~~~~~D  123 (239)
T PRK00216         52 GDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL-----GLSGNVEFVQGDAEA-LP--FPDNSFD  123 (239)
T ss_pred             CCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-----ccccCeEEEeccccc-CC--CCCCCcc
Confidence            45899999999999999999987 689999999999999988766431     123579999999864 33  4567899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++.+.-.+..        -...+++.+.++|+|||.+++..
T Consensus       124 ~I~~~~~l~~~~--------~~~~~l~~~~~~L~~gG~li~~~  158 (239)
T PRK00216        124 AVTIAFGLRNVP--------DIDKALREMYRVLKPGGRLVILE  158 (239)
T ss_pred             EEEEecccccCC--------CHHHHHHHHHHhccCCcEEEEEE
Confidence            998754321111        12368999999999999998753

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=99.32  E-value=1.1e-11  Score=106.03  Aligned_cols=103  Identities=17%  Similarity=0.253  Sum_probs=82.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC---CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF---EK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~---~~  140 (252)
                      ...|||||||+|..++.+|...+ +..++++|+++++++.|++++...      ++ .+++++.+|+.+.++...   +.
T Consensus        69 ~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~------gl~~~i~~~~gda~~~L~~l~~~~~~  142 (234)
T PLN02781         69 AKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA------GVDHKINFIQSDALSALDQLLNNDPK  142 (234)
T ss_pred             CCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEccHHHHHHHHHhCCCC
Confidence            44899999999999999998854 679999999999999999988764      44 479999999987665322   24


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      +++|.|++.-..+.           ...+++.+.+.|+|||.+++
T Consensus       143 ~~fD~VfiDa~k~~-----------y~~~~~~~~~ll~~GG~ii~  176 (234)
T PLN02781        143 PEFDFAFVDADKPN-----------YVHFHEQLLKLVKVGGIIAF  176 (234)
T ss_pred             CCCCEEEECCCHHH-----------HHHHHHHHHHhcCCCeEEEE
Confidence            68999998653221           22589999999999998876

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.31  E-value=2.4e-11  Score=101.99  Aligned_cols=103  Identities=22%  Similarity=0.379  Sum_probs=80.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..+++..|. ..++|+|+++.+++.++++..        ...++.++.+|+.+ ++  ++++.+|
T Consensus        40 ~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------~~~~i~~~~~d~~~-~~--~~~~~~D  108 (223)
T TIGR01934        40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------LPLNIEFIQADAEA-LP--FEDNSFD  108 (223)
T ss_pred             CCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--------cCCCceEEecchhc-CC--CCCCcEE
Confidence            458999999999999999999886 789999999999988876542        24578999999874 33  4567899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++++..-+...        ...+++.+.+.|+|||.+++..
T Consensus       109 ~i~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~~~~  143 (223)
T TIGR01934       109 AVTIAFGLRNVTD--------IQKALREMYRVLKPGGRLVILE  143 (223)
T ss_pred             EEEEeeeeCCccc--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            9987653222111        1269999999999999999865

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR00417 speE spermidine synthase

Probab=99.31  E-value=3.3e-11  Score=105.15  Aligned_cols=116  Identities=15%  Similarity=0.185  Sum_probs=90.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||+||||+|.++..+++..+...++++|+++.+++.|++.+....  .....+++.++.+|+...+...  ++.+|.|
T Consensus        74 ~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~--~~~~~~~v~i~~~D~~~~l~~~--~~~yDvI  149 (270)
T TIGR00417        74 KHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLA--GSYDDPRVDLQIDDGFKFLADT--ENTFDVI  149 (270)
T ss_pred             CEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhc--ccccCCceEEEECchHHHHHhC--CCCccEE
Confidence            38999999999999998887666789999999999999988765431  0112357899999987656432  5789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      ++..++|+..    ...+....+++.+.+.|+|||.+++.+...
T Consensus       150 i~D~~~~~~~----~~~l~~~ef~~~~~~~L~pgG~lv~~~~~~  189 (270)
T TIGR00417       150 IVDSTDPVGP----AETLFTKEFYELLKKALNEDGIFVAQSESP  189 (270)
T ss_pred             EEeCCCCCCc----ccchhHHHHHHHHHHHhCCCcEEEEcCCCc
Confidence            9998887632    223456789999999999999999976543

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.31  E-value=2.8e-11  Score=107.79  Aligned_cols=100  Identities=20%  Similarity=0.264  Sum_probs=79.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+..+. ..++|+|+++.+++.|++++...      +.+|+.++.+|+.+.+.   ..+.+|
T Consensus        81 g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~------g~~nV~~i~gD~~~~~~---~~~~fD  151 (322)
T PRK13943         81 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL------GIENVIFVCGDGYYGVP---EFAPYD  151 (322)
T ss_pred             CCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCChhhccc---ccCCcc
Confidence            468999999999999999998753 47999999999999999887654      67899999999864332   235799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++.+..+              .....+.+.|+|||.+++..+
T Consensus       152 ~Ii~~~g~~--------------~ip~~~~~~LkpgG~Lvv~~~  181 (322)
T PRK13943        152 VIFVTVGVD--------------EVPETWFTQLKEGGRVIVPIN  181 (322)
T ss_pred             EEEECCchH--------------HhHHHHHHhcCCCCEEEEEeC
Confidence            999865322              244567789999999988654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=99.30  E-value=1.4e-11  Score=103.54  Aligned_cols=119  Identities=13%  Similarity=0.047  Sum_probs=79.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cC---ccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IP---NYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~---~~~~  139 (252)
                      ...|||||||+|.++..+++.. +...++|||+++ |                ...+++.++++|+...  ++   ..+.
T Consensus        52 ~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------------~~~~~v~~i~~D~~~~~~~~~i~~~~~  114 (209)
T PRK11188         52 GMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------------DPIVGVDFLQGDFRDELVLKALLERVG  114 (209)
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------------cCCCCcEEEecCCCChHHHHHHHHHhC
Confidence            4589999999999999999986 457999999987 1                1346799999998641  10   1245


Q ss_pred             CCcccEEEEeCCCCccccc---cccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          140 KGQLTKMFFLFPDPHFKEK---NHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~---h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      ++++|.|+.+....|....   +...-.....+|+++.++|+|||.|++.+-..+.+......+.
T Consensus       115 ~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~~~~~l~~l~  179 (209)
T PRK11188        115 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEGFDEYLREIR  179 (209)
T ss_pred             CCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcCHHHHHHHHH
Confidence            7889999987632221110   0000001246899999999999999996543333333344443

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.30  E-value=8.2e-12  Score=102.47  Aligned_cols=100  Identities=14%  Similarity=0.281  Sum_probs=73.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...+||+|||.|.++..||.+.  ..++++|+++.+++.|++++        .+.+||.++++|+.    ...+++.||.
T Consensus        44 y~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl--------~~~~~V~~~~~dvp----~~~P~~~FDL  109 (201)
T PF05401_consen   44 YRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERL--------AGLPHVEWIQADVP----EFWPEGRFDL  109 (201)
T ss_dssp             EEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHT--------TT-SSEEEEES-TT----T---SS-EEE
T ss_pred             cceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhc--------CCCCCeEEEECcCC----CCCCCCCeeE
Confidence            3589999999999999999996  37999999999999998766        35689999999975    3456899999


Q ss_pred             EEEe----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFL----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++.    |-++...         -..+++.+...|+|||.+++.+-
T Consensus       110 IV~SEVlYYL~~~~~---------L~~~l~~l~~~L~pgG~LV~g~~  147 (201)
T PF05401_consen  110 IVLSEVLYYLDDAED---------LRAALDRLVAALAPGGHLVFGHA  147 (201)
T ss_dssp             EEEES-GGGSSSHHH---------HHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEehHhHcCCCHHH---------HHHHHHHHHHHhCCCCEEEEEEe
Confidence            9863    3333210         12488999999999999999874

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.30  E-value=1.2e-11  Score=104.14  Aligned_cols=107  Identities=15%  Similarity=0.106  Sum_probs=71.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------CCCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------NPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      +..|||+|||.|..++.||++  +..|+|||+|+.+++.+..........      +.....+|.++++|+.+ ++. ..
T Consensus        35 ~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~-~~~-~~  110 (213)
T TIGR03840        35 GARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFA-LTA-AD  110 (213)
T ss_pred             CCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCC-CCc-cc
Confidence            458999999999999999998  789999999999998764321000000      00012469999999864 331 11


Q ss_pred             CCcccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+.+|.|+-     .+|.+           ....+++.+.++|||||++++.+
T Consensus       111 ~~~fD~i~D~~~~~~l~~~-----------~R~~~~~~l~~lLkpgG~~ll~~  152 (213)
T TIGR03840       111 LGPVDAVYDRAALIALPEE-----------MRQRYAAHLLALLPPGARQLLIT  152 (213)
T ss_pred             CCCcCEEEechhhccCCHH-----------HHHHHHHHHHHHcCCCCeEEEEE
Confidence            234566552     22211           12359999999999999877764

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.30  E-value=8e-11  Score=96.38  Aligned_cols=152  Identities=18%  Similarity=0.137  Sum_probs=103.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.+|||+|||.|.++..|.+. .++...|||++++.+..+.+          .|   +.++++|+.+.|. .|++++||.
T Consensus        14 gsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~----------rG---v~Viq~Dld~gL~-~f~d~sFD~   78 (193)
T PF07021_consen   14 GSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA----------RG---VSVIQGDLDEGLA-DFPDQSFDY   78 (193)
T ss_pred             CCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH----------cC---CCEEECCHHHhHh-hCCCCCccE
Confidence            569999999999999988886 58899999999997765433          23   6699999988776 488999999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH-hc-CCCcccccccccccCccccCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL-EN-HPMFEALTKEELEADPVVKLL  223 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~p~~~~~  223 (252)
                      |+++-.-.....        -..+|+++.   +-|...+++..|-.+...-...+ .. -|.=...+.++|....    +
T Consensus        79 VIlsqtLQ~~~~--------P~~vL~Eml---RVgr~~IVsFPNFg~W~~R~~l~~~GrmPvt~~lPy~WYdTPN----i  143 (193)
T PF07021_consen   79 VILSQTLQAVRR--------PDEVLEEML---RVGRRAIVSFPNFGHWRNRLQLLLRGRMPVTKALPYEWYDTPN----I  143 (193)
T ss_pred             EehHhHHHhHhH--------HHHHHHHHH---HhcCeEEEEecChHHHHHHHHHHhcCCCCCCCCCCCcccCCCC----c
Confidence            998643211110        013666664   45878888777655444444444 22 1333334445554322    2


Q ss_pred             CCCC--HHHHHHHHcCCCeEEEEEEe
Q 025470          224 SSAT--EEGQKVARNGGQTFQAVFRR  247 (252)
Q Consensus       224 ~~~t--~~e~~~~~~G~~i~~~~~~k  247 (252)
                      ...|  .||......|-.|-.-++..
T Consensus       144 h~~Ti~DFe~lc~~~~i~I~~~~~~~  169 (193)
T PF07021_consen  144 HLCTIKDFEDLCRELGIRIEERVFLD  169 (193)
T ss_pred             ccccHHHHHHHHHHCCCEEEEEEEEc
Confidence            3445  89999999999987776653

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.30  E-value=1.9e-11  Score=102.60  Aligned_cols=99  Identities=19%  Similarity=0.262  Sum_probs=77.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..||... +...+++||+++..++.|++++...      +..||.++.+|...-++   ..+.+|
T Consensus        73 g~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~------~~~nv~~~~gdg~~g~~---~~apfD  143 (209)
T PF01135_consen   73 GDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARL------GIDNVEVVVGDGSEGWP---EEAPFD  143 (209)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHH------TTHSEEEEES-GGGTTG---GG-SEE
T ss_pred             CCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHh------ccCceeEEEcchhhccc---cCCCcC
Confidence            5699999999999999999984 4557999999999999999999876      78899999999864332   356899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-+-              .-..+...|++||++++--
T Consensus       144 ~I~v~~a~~~--------------ip~~l~~qL~~gGrLV~pi  172 (209)
T PF01135_consen  144 RIIVTAAVPE--------------IPEALLEQLKPGGRLVAPI  172 (209)
T ss_dssp             EEEESSBBSS----------------HHHHHTEEEEEEEEEEE
T ss_pred             EEEEeeccch--------------HHHHHHHhcCCCcEEEEEE
Confidence            9999865432              4456777899999999854

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.30  E-value=6.2e-11  Score=110.38  Aligned_cols=113  Identities=17%  Similarity=0.189  Sum_probs=85.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|..+..+++... ...++|+|+++.+++.+++++...      ++.||.++.+|+.. +   .+++++|
T Consensus       251 g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~------g~~~v~~~~~Da~~-~---~~~~~fD  320 (445)
T PRK14904        251 GSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL------GITIIETIEGDARS-F---SPEEQPD  320 (445)
T ss_pred             CCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh------CCCeEEEEeCcccc-c---ccCCCCC
Confidence            45899999999999999998743 568999999999999999888664      77899999999864 2   2456899


Q ss_pred             EEEEeCCCCccc--ccc--ccccc----------cCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFK--EKN--HRRRV----------ISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k--~~h--~krr~----------~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++..|.--..  .++  .+.+.          .+..+|..+.+.|||||++++.|-
T Consensus       321 ~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystc  378 (445)
T PRK14904        321 AILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATC  378 (445)
T ss_pred             EEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC
Confidence            999875531100  001  01111          245689999999999999999883

>PRK03612 spermidine synthase; Provisional

Probab=99.29  E-value=3e-11  Score=114.46  Aligned_cols=132  Identities=15%  Similarity=0.172  Sum_probs=97.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHH--HHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKER--ILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~--~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...|||||||+|..+..+++. |. .++++||+++++++.|+++  +..... .....++++++.+|+.+.+..  .++.
T Consensus       298 ~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~-~~~~dprv~vi~~Da~~~l~~--~~~~  373 (521)
T PRK03612        298 PRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNG-GALDDPRVTVVNDDAFNWLRK--LAEK  373 (521)
T ss_pred             CCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhc-cccCCCceEEEEChHHHHHHh--CCCC
Confidence            348999999999999999875 54 7999999999999999873  222100 011236899999999875543  2568


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhcCC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLENHP  204 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~~~  204 (252)
                      +|.|++++|+|+..   ...++.+.+|++.+.+.|+|||.+++.+..    .+.+..+.+.+.+.+
T Consensus       374 fDvIi~D~~~~~~~---~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~i~~~l~~~g  436 (521)
T PRK03612        374 FDVIIVDLPDPSNP---ALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFAPKAFWSIEATLEAAG  436 (521)
T ss_pred             CCEEEEeCCCCCCc---chhccchHHHHHHHHHhcCCCeEEEEecCCcccchHHHHHHHHHHHHcC
Confidence            99999999998732   123456778999999999999999997643    344455566666553

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=3.1e-11  Score=100.20  Aligned_cols=97  Identities=19%  Similarity=0.249  Sum_probs=79.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|..+.-||+.-  ..|+.||+.+...+.|++++..+      ++.||.++++|...-+   -..+.+|.
T Consensus        73 g~~VLEIGtGsGY~aAvla~l~--~~V~siEr~~~L~~~A~~~L~~l------g~~nV~v~~gDG~~G~---~~~aPyD~  141 (209)
T COG2518          73 GDRVLEIGTGSGYQAAVLARLV--GRVVSIERIEELAEQARRNLETL------GYENVTVRHGDGSKGW---PEEAPYDR  141 (209)
T ss_pred             CCeEEEECCCchHHHHHHHHHh--CeEEEEEEcHHHHHHHHHHHHHc------CCCceEEEECCcccCC---CCCCCcCE
Confidence            5689999999999999999994  38999999999999999998776      8999999999986432   23578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++.-.-|-              .-+.+...||+||++++-.
T Consensus       142 I~Vtaaa~~--------------vP~~Ll~QL~~gGrlv~Pv  169 (209)
T COG2518         142 IIVTAAAPE--------------VPEALLDQLKPGGRLVIPV  169 (209)
T ss_pred             EEEeeccCC--------------CCHHHHHhcccCCEEEEEE
Confidence            998754332              2235666899999999865

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.29  E-value=3.2e-11  Score=110.17  Aligned_cols=101  Identities=19%  Similarity=0.314  Sum_probs=75.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +...|||||||+|.++..+|+.. ++.++|+|+|+.+++.|++++.        +. ++.+..+|+.. +     ++++|
T Consensus       167 ~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~--------~l-~v~~~~~D~~~-l-----~~~fD  230 (383)
T PRK11705        167 PGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCA--------GL-PVEIRLQDYRD-L-----NGQFD  230 (383)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhc--------cC-eEEEEECchhh-c-----CCCCC
Confidence            35689999999999999999876 6789999999999999987652        22 48888888753 2     46899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+....-.+....      -...+++++.++|||||.+++.+
T Consensus       231 ~Ivs~~~~ehvg~~------~~~~~l~~i~r~LkpGG~lvl~~  267 (383)
T PRK11705        231 RIVSVGMFEHVGPK------NYRTYFEVVRRCLKPDGLFLLHT  267 (383)
T ss_pred             EEEEeCchhhCChH------HHHHHHHHHHHHcCCCcEEEEEE
Confidence            99764321111000      01369999999999999999865

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=99.29  E-value=3.5e-11  Score=87.11  Aligned_cols=103  Identities=19%  Similarity=0.319  Sum_probs=79.3

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .+||+|||.|.++..++. .+...++|+|+++.++..+++...      .....++.++..|+.....  .....+|.|+
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~d~i~   71 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAA------ALLADNVEVLKGDAEELPP--EADESFDVII   71 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHh------cccccceEEEEcChhhhcc--ccCCceEEEE
Confidence            389999999999999998 567899999999999887764221      1355789999999875332  3457899999


Q ss_pred             EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++.+..+.       ......+++.+.+.|+|||.+++.
T Consensus        72 ~~~~~~~~-------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          72 SDPPLHHL-------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             Eccceeeh-------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            98776542       012346999999999999999875

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=99.29  E-value=3.6e-11  Score=106.61  Aligned_cols=103  Identities=15%  Similarity=0.210  Sum_probs=77.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.+++.+++++|+.+++++|+ +.+++.|++++...      ++ +++.++.+|+.+ .  .++.  .|
T Consensus       150 ~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------gl~~rv~~~~~d~~~-~--~~~~--~D  217 (306)
T TIGR02716       150 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK------GVADRMRGIAVDIYK-E--SYPE--AD  217 (306)
T ss_pred             CCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhC------CccceEEEEecCccC-C--CCCC--CC
Confidence            45899999999999999999999999999997 78999888877553      44 479999999753 1  2333  48


Q ss_pred             EEEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++..-- -|...       ....++++++++|+|||+|++..
T Consensus       218 ~v~~~~~lh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d  254 (306)
T TIGR02716       218 AVLFCRILYSANEQ-------LSTIMCKKAFDAMRSGGRLLILD  254 (306)
T ss_pred             EEEeEhhhhcCChH-------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            77654311 12110       11258999999999999998863

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.29  E-value=4.6e-11  Score=111.20  Aligned_cols=116  Identities=18%  Similarity=0.271  Sum_probs=90.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc-cCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN-YFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~-~~~~~s~d  144 (252)
                      ...|||+|||+|.+++.+|+..  ..++|+|+|+.|++.|++++...      +++|+.++.+|+.+.+.. .+.++++|
T Consensus       298 ~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~fD  369 (443)
T PRK13168        298 GDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRN------GLDNVTFYHANLEEDFTDQPWALGGFD  369 (443)
T ss_pred             CCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEeChHHhhhhhhhhcCCCC
Confidence            4589999999999999999984  68999999999999999887653      677999999999754432 13356799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      .|+++.|--  .         ....++.+.+ |+|++.+|+++|...++..+.....
T Consensus       370 ~Vi~dPPr~--g---------~~~~~~~l~~-~~~~~ivyvSCnp~tlaRDl~~L~~  414 (443)
T PRK13168        370 KVLLDPPRA--G---------AAEVMQALAK-LGPKRIVYVSCNPATLARDAGVLVE  414 (443)
T ss_pred             EEEECcCCc--C---------hHHHHHHHHh-cCCCeEEEEEeChHHhhccHHHHhh
Confidence            999865421  1         1246666655 6999999999999888888776554

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=2.3e-12  Score=108.06  Aligned_cols=150  Identities=15%  Similarity=0.265  Sum_probs=101.6

Q ss_pred             cccCCCCCCCCCCCCCCCCCCCC----Cc-cccCCCCCCCCCccCCCCCc--eEEEEcCcccHHHHHHHHHCCC--CeEE
Q 025470           23 RARAHSNPLSDSHFPVPISPSHV----DY-SLHYPHFFPPADQVNCSKKI--QFADIGCGFGGLLISLSTLFPE--VLMI   93 (252)
Q Consensus        23 ~~r~~~np~~~~~~~~~~~~~~~----~w-~~~f~~~~~~~~~~~~~~~~--~vLDIGcG~G~~~~~lA~~~p~--~~~i   93 (252)
                      ..+.+.+|-+.|...|-.+.+.+    +| ...|+...+..      ..+  .|||||||.|.....+.+.+|+  ..++
T Consensus        28 ~~~y~~~~~k~wD~fy~~~~~rFfkdR~wL~~Efpel~~~~------~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~  101 (264)
T KOG2361|consen   28 VVKYEREASKYWDTFYKIHENRFFKDRNWLLREFPELLPVD------EKSAETILEVGCGVGNTVFPLLKTSPNNRLKVY  101 (264)
T ss_pred             hhhhhcchhhhhhhhhhhccccccchhHHHHHhhHHhhCcc------ccChhhheeeccCCCcccchhhhcCCCCCeEEE
Confidence            34566666666655565544433    45 44555553332      222  7999999999999999999887  8899


Q ss_pred             EEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-ccCccCCCCcccEEEEeC------CCCccccccccccccC
Q 025470           94 GMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-YIPNYFEKGQLTKMFFLF------PDPHFKEKNHRRRVIS  166 (252)
Q Consensus        94 GiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-~l~~~~~~~s~d~i~~~f------pdP~~k~~h~krr~~~  166 (252)
                      ++|.|+.+++..+++..-       ...++.....|+.. .+...+..+++|.|.+.|      |+-|.           
T Consensus       102 acDfsp~Ai~~vk~~~~~-------~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~-----------  163 (264)
T KOG2361|consen  102 ACDFSPRAIELVKKSSGY-------DESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQ-----------  163 (264)
T ss_pred             EcCCChHHHHHHHhcccc-------chhhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHH-----------
Confidence            999999999887765321       22445444455431 234456689999988765      44332           


Q ss_pred             HHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          167 PHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       167 ~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                       ..+..+.++|||||.|++.    +|...-++++.
T Consensus       164 -~a~~nl~~llKPGG~llfr----DYg~~DlaqlR  193 (264)
T KOG2361|consen  164 -SVIKNLRTLLKPGGSLLFR----DYGRYDLAQLR  193 (264)
T ss_pred             -HHHHHHHHHhCCCcEEEEe----ecccchHHHHh
Confidence             5999999999999999995    35555555554

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.28  E-value=4.5e-11  Score=100.12  Aligned_cols=96  Identities=18%  Similarity=0.201  Sum_probs=70.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++..|+..++|||+|+.|++.|+++           .+++.++++|+.+    .++++++|.|
T Consensus        45 ~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~-----------~~~~~~~~~d~~~----~~~~~sfD~V  109 (204)
T TIGR03587        45 ASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY-----------LPNINIIQGSLFD----PFKDNFFDLV  109 (204)
T ss_pred             CcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh-----------CCCCcEEEeeccC----CCCCCCEEEE
Confidence            479999999999999999988889999999999999988653           2457788888753    3678899999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      +++..--+..      .-....+++++.+++  ++.+++
T Consensus       110 ~~~~vL~hl~------p~~~~~~l~el~r~~--~~~v~i  140 (204)
T TIGR03587       110 LTKGVLIHIN------PDNLPTAYRELYRCS--NRYILI  140 (204)
T ss_pred             EECChhhhCC------HHHHHHHHHHHHhhc--CcEEEE
Confidence            9754321110      001125777888876  455555

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00438 rrmJ cell division protein FtsJ

Probab=99.28  E-value=2e-11  Score=100.84  Aligned_cols=118  Identities=15%  Similarity=0.025  Sum_probs=78.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-----cCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-----IPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-----l~~~~~  139 (252)
                      ...|||||||+|.++..++... +...++|+|+++.+                 ..+++.++++|+.+.     +...++
T Consensus        33 g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------------~~~~i~~~~~d~~~~~~~~~l~~~~~   95 (188)
T TIGR00438        33 GDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------------PIENVDFIRGDFTDEEVLNKIRERVG   95 (188)
T ss_pred             CCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------------cCCCceEEEeeCCChhHHHHHHHHhC
Confidence            4589999999999999999886 56789999999853                 124688888887531     011245


Q ss_pred             CCcccEEEEeCCCC----ccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          140 KGQLTKMFFLFPDP----HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       140 ~~s~d~i~~~fpdP----~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      .+.+|.|+++.+.+    |. ..|.........++..+.++|+|||++++.....+-...+.+.+.
T Consensus        96 ~~~~D~V~~~~~~~~~g~~~-~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~~~~~~~l~~l~  160 (188)
T TIGR00438        96 DDKVDVVMSDAAPNISGYWD-IDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQGEEIDEYLNELR  160 (188)
T ss_pred             CCCccEEEcCCCCCCCCCcc-ccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccCccHHHHHHHHH
Confidence            66899999876422    11 111111011246899999999999999997654333334444443

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.28  E-value=7.2e-11  Score=108.09  Aligned_cols=115  Identities=12%  Similarity=0.118  Sum_probs=83.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccC-CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYF-EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~-~~~s  142 (252)
                      ...|||+|||+|.+++.++.. ....+++||+|+.+++.|++++...      ++  .++.++++|+.+.+.... ....
T Consensus       221 g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~N------gl~~~~v~~i~~D~~~~l~~~~~~~~~  293 (396)
T PRK15128        221 NKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELN------KLDLSKAEFVRDDVFKLLRTYRDRGEK  293 (396)
T ss_pred             CCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHc------CCCCCcEEEEEccHHHHHHHHHhcCCC
Confidence            458999999999999877654 3458999999999999999988664      55  479999999986554321 2458


Q ss_pred             ccEEEEeCCCCccccccccccc--cCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRV--ISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~--~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +|.|+++.|-- .+.+......  -...++....++|+|||.|++.|-
T Consensus       294 fDlVilDPP~f-~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc  340 (396)
T PRK15128        294 FDVIVMDPPKF-VENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC  340 (396)
T ss_pred             CCEEEECCCCC-CCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence            99999987631 1111100000  124566778899999999998764

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=99.28  E-value=1.6e-11  Score=100.77  Aligned_cols=113  Identities=18%  Similarity=0.264  Sum_probs=84.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .-|||||||+|.-.-.+-- -|...++++|.++.|-+.|.+.+.+.      ...++. |+.++.. .+++ ++++|+|.
T Consensus        78 ~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~E~------k~~~~~~fvva~ge-~l~~-l~d~s~Dt  148 (252)
T KOG4300|consen   78 GDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAAEK------KPLQVERFVVADGE-NLPQ-LADGSYDT  148 (252)
T ss_pred             cceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHhhc------cCcceEEEEeechh-cCcc-cccCCeee
Confidence            4689999999976544432 37889999999999999998877653      455666 9999986 5764 68999999


Q ss_pred             EEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch---HHHHHHHHHHh
Q 025470          146 MFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE---ELGDWMRSCLE  201 (252)
Q Consensus       146 i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~---~~~~~~~~~~~  201 (252)
                      |+..|     -||-             ..|+++.++|+|||+++|.-...   .....+.++..
T Consensus       149 VV~TlvLCSve~~~-------------k~L~e~~rlLRpgG~iifiEHva~~y~~~n~i~q~v~  199 (252)
T KOG4300|consen  149 VVCTLVLCSVEDPV-------------KQLNEVRRLLRPGGRIIFIEHVAGEYGFWNRILQQVA  199 (252)
T ss_pred             EEEEEEEeccCCHH-------------HHHHHHHHhcCCCcEEEEEecccccchHHHHHHHHHh
Confidence            98544     2333             59999999999999999976543   33444555443

>PTZ00146 fibrillarin; Provisional

Probab=99.27  E-value=5.3e-11  Score=103.93  Aligned_cols=104  Identities=14%  Similarity=0.124  Sum_probs=76.7

Q ss_pred             CCceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...|||+|||+|.++..+|... +...|++||+++.+.+.....+.        ..+||.++..|+.......+...++
T Consensus       132 pG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak--------~r~NI~~I~~Da~~p~~y~~~~~~v  203 (293)
T PTZ00146        132 PGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAK--------KRPNIVPIIEDARYPQKYRMLVPMV  203 (293)
T ss_pred             CCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--------hcCCCEEEECCccChhhhhcccCCC
Confidence            35689999999999999999995 45689999999876644333221        2368999999986321111224589


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|++....|+..          ..++.++.++|||||.|+|.
T Consensus       204 DvV~~Dva~pdq~----------~il~~na~r~LKpGG~~vI~  236 (293)
T PTZ00146        204 DVIFADVAQPDQA----------RIVALNAQYFLKNGGHFIIS  236 (293)
T ss_pred             CEEEEeCCCcchH----------HHHHHHHHHhccCCCEEEEE
Confidence            9999988777632          13667899999999999995

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=99.27  E-value=6.9e-11  Score=99.31  Aligned_cols=102  Identities=16%  Similarity=0.285  Sum_probs=86.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEe-CCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVR-TNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~-~da~~~l~~~~~~~s  142 (252)
                      ...|||||++.|..++.||...| +..++.||+++++.+.|++++++.      +..+ |.++. +|+.+.+.. +..++
T Consensus        60 ~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~a------g~~~~i~~~~~gdal~~l~~-~~~~~  132 (219)
T COG4122          60 PKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEA------GVDDRIELLLGGDALDVLSR-LLDGS  132 (219)
T ss_pred             CceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHc------CCcceEEEEecCcHHHHHHh-ccCCC
Confidence            45899999999999999999988 889999999999999999999775      6655 88888 699877765 55799


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ||.||+.---+           -++.+++.+.++|+|||.+++
T Consensus       133 fDliFIDadK~-----------~yp~~le~~~~lLr~GGliv~  164 (219)
T COG4122         133 FDLVFIDADKA-----------DYPEYLERALPLLRPGGLIVA  164 (219)
T ss_pred             ccEEEEeCChh-----------hCHHHHHHHHHHhCCCcEEEE
Confidence            99999864211           245799999999999999987

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.26  E-value=3.4e-11  Score=112.96  Aligned_cols=104  Identities=17%  Similarity=0.242  Sum_probs=78.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..  ..++|||+++.|++.+....        ...+|+.++++|+.. ....++++++|.
T Consensus        38 ~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~--------~~~~~i~~~~~d~~~-~~~~~~~~~fD~  106 (475)
T PLN02336         38 GKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESIN--------GHYKNVKFMCADVTS-PDLNISDGSVDL  106 (475)
T ss_pred             CCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHh--------ccCCceEEEEecccc-cccCCCCCCEEE
Confidence            4589999999999999999984  57999999999997664321        235689999999853 222366789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |+++++-.+....      ....+++++.++|||||.+++.
T Consensus       107 I~~~~~l~~l~~~------~~~~~l~~~~r~Lk~gG~l~~~  141 (475)
T PLN02336        107 IFSNWLLMYLSDK------EVENLAERMVKWLKVGGYIFFR  141 (475)
T ss_pred             EehhhhHHhCCHH------HHHHHHHHHHHhcCCCeEEEEE
Confidence            9987754332110      0136999999999999999885

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.25  E-value=4.3e-11  Score=101.22  Aligned_cols=107  Identities=13%  Similarity=0.120  Sum_probs=72.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------CCCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------NPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      +..|||+|||.|..++.||++  +..|+|||+|+.+++.+..........      ......+|.+.++|+.+ +.. -.
T Consensus        38 ~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~-l~~-~~  113 (218)
T PRK13255         38 GSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFA-LTA-AD  113 (218)
T ss_pred             CCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccC-CCc-cc
Confidence            458999999999999999997  889999999999998764211000000      00123578999999874 321 11


Q ss_pred             CCcccEEE-----EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMF-----FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~-----~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+.+|.|+     +.+| |.          ....+++.+.++|+|||++++.+
T Consensus       114 ~~~fd~v~D~~~~~~l~-~~----------~R~~~~~~l~~lL~pgG~~~l~~  155 (218)
T PRK13255        114 LADVDAVYDRAALIALP-EE----------MRERYVQQLAALLPAGCRGLLVT  155 (218)
T ss_pred             CCCeeEEEehHhHhhCC-HH----------HHHHHHHHHHHHcCCCCeEEEEE
Confidence            24677776     2332 21          12369999999999999866644

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=99.25  E-value=1e-10  Score=108.38  Aligned_cols=115  Identities=15%  Similarity=0.214  Sum_probs=83.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|..+..+|+..+...++|+|+++.+++.+++++...      ++. ++.++.+|+.. +....+.+++|
T Consensus       239 g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~------g~~~~v~~~~~d~~~-~~~~~~~~~fD  311 (426)
T TIGR00563       239 EETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRL------GLTIKAETKDGDGRG-PSQWAENEQFD  311 (426)
T ss_pred             CCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEecccccc-ccccccccccC
Confidence            56899999999999999999887779999999999999999888654      444 34446677642 22223467899


Q ss_pred             EEEEeCCCCccc--ccc--cccc----------ccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFK--EKN--HRRR----------VISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k--~~h--~krr----------~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++.-|.--..  .++  .+.+          -.+..+|..+.++|||||.++++|
T Consensus       312 ~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvyst  368 (426)
T TIGR00563       312 RILLDAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYAT  368 (426)
T ss_pred             EEEEcCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            999865422110  000  0111          124679999999999999999875

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.25  E-value=1.6e-10  Score=98.31  Aligned_cols=106  Identities=19%  Similarity=0.250  Sum_probs=78.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  ...++|+|+++.+++.|++++...      +. ++.++.+|+.....  ...+.+|.
T Consensus        49 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~------~~-~~~~~~~~~~~~~~--~~~~~fD~  117 (233)
T PRK05134         49 GKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALES------GL-KIDYRQTTAEELAA--EHPGQFDV  117 (233)
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHc------CC-ceEEEecCHHHhhh--hcCCCccE
Confidence            447999999999999999886  568999999999999888776432      33 57888888764321  23578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |++...-.+...        ...+++.+.++|+|||.+++.+...
T Consensus       118 Ii~~~~l~~~~~--------~~~~l~~~~~~L~~gG~l~v~~~~~  154 (233)
T PRK05134        118 VTCMEMLEHVPD--------PASFVRACAKLVKPGGLVFFSTLNR  154 (233)
T ss_pred             EEEhhHhhccCC--------HHHHHHHHHHHcCCCcEEEEEecCC
Confidence            987543222111        1258999999999999999876543

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.25  E-value=9e-11  Score=96.90  Aligned_cols=103  Identities=14%  Similarity=0.179  Sum_probs=73.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...+||||||.|..++.||++  +..|+++|+|+.+++.+++.+..      .+++ |+....|+.+ ..  + +..+|.
T Consensus        31 ~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~------~~l~-i~~~~~Dl~~-~~--~-~~~yD~   97 (192)
T PF03848_consen   31 PGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEE------EGLD-IRTRVADLND-FD--F-PEEYDF   97 (192)
T ss_dssp             SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHH------TT-T-EEEEE-BGCC-BS----TTTEEE
T ss_pred             CCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhh------cCce-eEEEEecchh-cc--c-cCCcCE
Confidence            348999999999999999999  88999999999999988765543      2555 8899999753 22  3 468999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+....-...      .|-..+.+++.+...++|||.+++.+
T Consensus        98 I~st~v~~fL------~~~~~~~i~~~m~~~~~pGG~~li~~  133 (192)
T PF03848_consen   98 IVSTVVFMFL------QRELRPQIIENMKAATKPGGYNLIVT  133 (192)
T ss_dssp             EEEESSGGGS-------GGGHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEEEeccC------CHHHHHHHHHHHHhhcCCcEEEEEEE
Confidence            8753211111      11123569999999999999988854

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.25  E-value=1.2e-10  Score=101.43  Aligned_cols=163  Identities=17%  Similarity=0.148  Sum_probs=102.1

Q ss_pred             CCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-E
Q 025470           45 VDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-I  123 (252)
Q Consensus        45 ~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v  123 (252)
                      ++|+.+-+...+.       .+..|||||||+|.++..|+.+.+. .|+|||.+......... ++..     .+.++ +
T Consensus       102 ~KW~rl~p~l~~L-------~gk~VLDIGC~nGY~~frM~~~GA~-~ViGiDP~~lf~~QF~~-i~~~-----lg~~~~~  167 (315)
T PF08003_consen  102 WKWDRLLPHLPDL-------KGKRVLDIGCNNGYYSFRMLGRGAK-SVIGIDPSPLFYLQFEA-IKHF-----LGQDPPV  167 (315)
T ss_pred             chHHHHHhhhCCc-------CCCEEEEecCCCcHHHHHHhhcCCC-EEEEECCChHHHHHHHH-HHHH-----hCCCccE
Confidence            4777777665322       2669999999999999999999754 69999999875433221 1111     12222 3


Q ss_pred             EEEeCCcccccCccCCCCcccEEEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHH
Q 025470          124 SVVRTNSMKYIPNYFEKGQLTKMFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRS  198 (252)
Q Consensus       124 ~~~~~da~~~l~~~~~~~s~d~i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~  198 (252)
                      .++...+ +.++.   .+.||.|+..     -.+|.             ..|.++...|++||.+++.|-.         
T Consensus       168 ~~lplgv-E~Lp~---~~~FDtVF~MGVLYHrr~Pl-------------~~L~~Lk~~L~~gGeLvLETlv---------  221 (315)
T PF08003_consen  168 FELPLGV-EDLPN---LGAFDTVFSMGVLYHRRSPL-------------DHLKQLKDSLRPGGELVLETLV---------  221 (315)
T ss_pred             EEcCcch-hhccc---cCCcCEEEEeeehhccCCHH-------------HHHHHHHHhhCCCCEEEEEEee---------
Confidence            3433333 34553   5789999853     24544             5999999999999999998832         


Q ss_pred             HHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025470          199 CLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI  248 (252)
Q Consensus       199 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~  248 (252)
                       +.......-++.+.++..+.-..+.+......+..+.|+.-.+++-...
T Consensus       222 -i~g~~~~~L~P~~rYa~m~nv~FiPs~~~L~~wl~r~gF~~v~~v~~~~  270 (315)
T PF08003_consen  222 -IDGDENTVLVPEDRYAKMRNVWFIPSVAALKNWLERAGFKDVRCVDVSP  270 (315)
T ss_pred             -ecCCCceEEccCCcccCCCceEEeCCHHHHHHHHHHcCCceEEEecCcc
Confidence             1111112223333354443322233444677777888888777776554

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.24  E-value=1.3e-10  Score=107.85  Aligned_cols=116  Identities=14%  Similarity=0.160  Sum_probs=88.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~d  144 (252)
                      ...|||+|||+|.+++.+|+..  ..++|+|+++.+++.|++++...      ++.|+.|+.+|+.+.++.. +..+++|
T Consensus       293 ~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~------~~~nv~~~~~d~~~~l~~~~~~~~~~D  364 (431)
T TIGR00479       293 EELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELN------GIANVEFLAGTLETVLPKQPWAGQIPD  364 (431)
T ss_pred             CCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHh------CCCceEEEeCCHHHHHHHHHhcCCCCC
Confidence            4589999999999999999884  57999999999999999987654      6789999999997644332 2345789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      .|+++.|-.          =....+++.+.+ |+|++.+|+.++...++..+....
T Consensus       365 ~vi~dPPr~----------G~~~~~l~~l~~-l~~~~ivyvsc~p~tlard~~~l~  409 (431)
T TIGR00479       365 VLLLDPPRK----------GCAAEVLRTIIE-LKPERIVYVSCNPATLARDLEFLC  409 (431)
T ss_pred             EEEECcCCC----------CCCHHHHHHHHh-cCCCEEEEEcCCHHHHHHHHHHHH
Confidence            999865521          013467777664 899999999988776666555443

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.24  E-value=9.9e-11  Score=104.35  Aligned_cols=113  Identities=16%  Similarity=0.236  Sum_probs=85.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.+|..  ...++|+|+++.+++.|++++...      +++|+.|+++|+.+....  ..+.+|.
T Consensus       174 ~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~------~l~~v~~~~~D~~~~~~~--~~~~~D~  243 (315)
T PRK03522        174 PRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAEL------GLTNVQFQALDSTQFATA--QGEVPDL  243 (315)
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEEcCHHHHHHh--cCCCCeE
Confidence            358999999999999999996  578999999999999999887654      678999999999754321  2357899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC  199 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~  199 (252)
                      |+++.|-    ..      ....+++.+ ..+.|++.+|+.++...++..+...
T Consensus       244 Vv~dPPr----~G------~~~~~~~~l-~~~~~~~ivyvsc~p~t~~rd~~~l  286 (315)
T PRK03522        244 VLVNPPR----RG------IGKELCDYL-SQMAPRFILYSSCNAQTMAKDLAHL  286 (315)
T ss_pred             EEECCCC----CC------ccHHHHHHH-HHcCCCeEEEEECCcccchhHHhhc
Confidence            9998541    11      122344444 4478999999999988877766543

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.24  E-value=2.5e-11  Score=96.59  Aligned_cols=136  Identities=17%  Similarity=0.217  Sum_probs=86.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||.|.++..+++.  +..++|+|+++.+++.                .++.....+... .  ..+++++|.
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~--~~~~~g~D~~~~~~~~----------------~~~~~~~~~~~~-~--~~~~~~fD~   81 (161)
T PF13489_consen   23 GKRVLDIGCGTGSFLRALAKR--GFEVTGVDISPQMIEK----------------RNVVFDNFDAQD-P--PFPDGSFDL   81 (161)
T ss_dssp             TSEEEEESSTTSHHHHHHHHT--TSEEEEEESSHHHHHH----------------TTSEEEEEECHT-H--HCHSSSEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHhh----------------hhhhhhhhhhhh-h--hccccchhh
Confidence            569999999999999999777  4489999999998765                122233322221 1  245789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS  225 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  225 (252)
                      |+++..--|...        -..+|+.+.++|||||.+++.+......  ....+.... +..... .+.      ....
T Consensus        82 i~~~~~l~~~~d--------~~~~l~~l~~~LkpgG~l~~~~~~~~~~--~~~~~~~~~-~~~~~~-~~~------~~~~  143 (161)
T PF13489_consen   82 IICNDVLEHLPD--------PEEFLKELSRLLKPGGYLVISDPNRDDP--SPRSFLKWR-YDRPYG-GHV------HFFS  143 (161)
T ss_dssp             EEEESSGGGSSH--------HHHHHHHHHHCEEEEEEEEEEEEBTTSH--HHHHHHHCC-GTCHHT-TTT------EEBB
T ss_pred             HhhHHHHhhccc--------HHHHHHHHHHhcCCCCEEEEEEcCCcch--hhhHHHhcC-CcCccC-cee------ccCC
Confidence            998754333321        1269999999999999999998764321  111222211 111100 011      1145


Q ss_pred             CCHHHHHHHHcCCCe
Q 025470          226 ATEEGQKVARNGGQT  240 (252)
Q Consensus       226 ~t~~e~~~~~~G~~i  240 (252)
                      ...+.....+.|.+|
T Consensus       144 ~~~~~~ll~~~G~~i  158 (161)
T PF13489_consen  144 PDELRQLLEQAGFEI  158 (161)
T ss_dssp             HHHHHHHHHHTTEEE
T ss_pred             HHHHHHHHHHCCCEE
Confidence            567888888888765

...

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.24  E-value=1.2e-10  Score=97.17  Aligned_cols=106  Identities=18%  Similarity=0.203  Sum_probs=78.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|.+++.++.+. ...+++||+++.+++.|++++...      ++.|+.++++|+.+.+..  ....+|.
T Consensus        54 ~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~~~------~~~~v~~~~~D~~~~l~~--~~~~fDl  124 (199)
T PRK10909         54 DARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLATL------KAGNARVVNTNALSFLAQ--PGTPHNV  124 (199)
T ss_pred             CCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEEchHHHHHhh--cCCCceE
Confidence            4589999999999999765554 358999999999999999888664      567899999998765532  2346999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHh--hcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYV--LGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~--LkpgG~l~~~td~  189 (252)
                      |+++.|-  .+ .      .....++.+...  |+|+|.+++.+..
T Consensus       125 V~~DPPy--~~-g------~~~~~l~~l~~~~~l~~~~iv~ve~~~  161 (199)
T PRK10909        125 VFVDPPF--RK-G------LLEETINLLEDNGWLADEALIYVESEV  161 (199)
T ss_pred             EEECCCC--CC-C------hHHHHHHHHHHCCCcCCCcEEEEEecC
Confidence            9988762  11 1      123456666553  7899999987643

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.24  E-value=1.9e-11  Score=101.29  Aligned_cols=106  Identities=19%  Similarity=0.196  Sum_probs=79.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|..+..|...  +..++|+|||+.|++.|.+  .+.        . -.++.+|.-+-++  |.+++||.
T Consensus        51 ~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~--~e~--------e-gdlil~DMG~Glp--frpGtFDg  115 (270)
T KOG1541|consen   51 SGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVE--REL--------E-GDLILCDMGEGLP--FRPGTFDG  115 (270)
T ss_pred             CcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHH--hhh--------h-cCeeeeecCCCCC--CCCCccce
Confidence            458999999999999988877  5789999999999999876  222        1 3467788766565  88999999


Q ss_pred             EEEeCCCCc----ccccc-ccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPH----FKEKN-HRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~----~k~~h-~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      ++..-.-.|    .+..| .++|+.  .|+..++.+|++|++.+++.-
T Consensus       116 ~ISISAvQWLcnA~~s~~~P~~Rl~--~FF~tLy~~l~rg~raV~QfY  161 (270)
T KOG1541|consen  116 VISISAVQWLCNADKSLHVPKKRLL--RFFGTLYSCLKRGARAVLQFY  161 (270)
T ss_pred             EEEeeeeeeecccCccccChHHHHH--HHhhhhhhhhccCceeEEEec
Confidence            875332222    22222 344443  489999999999999999864

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.22  E-value=5.8e-11  Score=103.29  Aligned_cols=112  Identities=20%  Similarity=0.288  Sum_probs=75.0

Q ss_pred             ceEEEEcCcccH----HHHHHHHHCC-----CCeEEEEecCHhHHHHHHHHHHH---Hhhc----------CCC------
Q 025470           67 IQFADIGCGFGG----LLISLSTLFP-----EVLMIGMELRDKVTEYVKERILA---LRVS----------NPG------  118 (252)
Q Consensus        67 ~~vLDIGcG~G~----~~~~lA~~~p-----~~~~iGiDis~~~i~~a~~~~~~---~~~~----------~~~------  118 (252)
                      -.|+|+|||+|.    +++.+++..+     +..++|+|+|+.|++.|++.+-.   .+..          ...      
T Consensus       101 ~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v~  180 (264)
T smart00138      101 VRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRVK  180 (264)
T ss_pred             EEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEEC
Confidence            489999999997    4555666544     46899999999999999875311   0000          000      


Q ss_pred             --CcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          119 --QYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       119 --~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                        --.+|.|.+.|+.+ .+  ++.+.+|.|++...--++..      .....++++++++|+|||.+++..
T Consensus       181 ~~ir~~V~F~~~dl~~-~~--~~~~~fD~I~crnvl~yf~~------~~~~~~l~~l~~~L~pGG~L~lg~  242 (264)
T smart00138      181 PELKERVRFAKHNLLA-ES--PPLGDFDLIFCRNVLIYFDE------PTQRKLLNRFAEALKPGGYLFLGH  242 (264)
T ss_pred             hHHhCcCEEeeccCCC-CC--CccCCCCEEEechhHHhCCH------HHHHHHHHHHHHHhCCCeEEEEEC
Confidence              01378999999864 22  45788999987322111100      012359999999999999999854

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.20  E-value=1.1e-10  Score=114.31  Aligned_cols=134  Identities=10%  Similarity=0.111  Sum_probs=93.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +..|||+|||+|.+++.+|... ...+++||+|+.+++.|++++...      ++  .+++++++|+.+.+.. + ...+
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~G-a~~V~~vD~s~~al~~a~~N~~~n------g~~~~~v~~i~~D~~~~l~~-~-~~~f  609 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALGG-AKSTTTVDMSNTYLEWAERNFALN------GLSGRQHRLIQADCLAWLKE-A-REQF  609 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHh------CCCccceEEEEccHHHHHHH-c-CCCc
Confidence            4589999999999999999863 346999999999999999988654      44  3799999998765532 2 4689


Q ss_pred             cEEEEeCCCCcccccc-c--cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC-cccc
Q 025470          144 TKMFFLFPDPHFKEKN-H--RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM-FEAL  209 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h-~--krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~-~~~~  209 (252)
                      |.|+++.|---..+.. .  .-.-....++..+.++|+|||.+++.+....+.. ..+.+...++ +..+
T Consensus       610 DlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~~~~~-~~~~~~~~g~~~~~i  678 (702)
T PRK11783        610 DLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKRGFKM-DEEGLAKLGLKAEEI  678 (702)
T ss_pred             CEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCccCCh-hHHHHHhCCCeEEEE
Confidence            9999986532111000 0  0000134688889999999999999887654433 2445554443 4333

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.20  E-value=3.5e-10  Score=95.51  Aligned_cols=149  Identities=13%  Similarity=0.151  Sum_probs=93.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..++..  +..++|+|+++.|++.|++++...      +. .++.+..+|+.. ++     +++|
T Consensus        56 ~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~~-~~-----~~fD  121 (219)
T TIGR02021        56 GKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGR------DVAGNVEFEVNDLLS-LC-----GEFD  121 (219)
T ss_pred             CCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEECChhh-CC-----CCcC
Confidence            458999999999999999987  558999999999999998876542      33 479999999863 32     6899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLS  224 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  224 (252)
                      .|+....--+....      ....+++++.+++++++.+.+. +..... .....+...  +.....     .+. ....
T Consensus       122 ~ii~~~~l~~~~~~------~~~~~l~~i~~~~~~~~~i~~~-~~~~~~-~~~~~~~~~--~~~~~~-----~~~-~~~~  185 (219)
T TIGR02021       122 IVVCMDVLIHYPAS------DMAKALGHLASLTKERVIFTFA-PKTAWL-AFLKMIGEL--FPGSSR-----ATS-AYLH  185 (219)
T ss_pred             EEEEhhHHHhCCHH------HHHHHHHHHHHHhCCCEEEEEC-CCchHH-HHHHHHHhh--CcCccc-----ccc-eEEe
Confidence            88764321111000      0125888999998877666553 222221 112222211  111100     000 0113


Q ss_pred             CCCHHHHHHHHcCCCeEEEE
Q 025470          225 SATEEGQKVARNGGQTFQAV  244 (252)
Q Consensus       225 ~~t~~e~~~~~~G~~i~~~~  244 (252)
                      +..+++......|..+-...
T Consensus       186 ~~~~~~~~l~~~Gf~v~~~~  205 (219)
T TIGR02021       186 PMTDLERALGELGWKIVREG  205 (219)
T ss_pred             cHHHHHHHHHHcCceeeeee
Confidence            55688888888898876554

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=2.2e-10  Score=100.28  Aligned_cols=118  Identities=17%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...|||+|||+|.++++.++... ..++|+|+++-+++.|+.|+...      +.+. +..-..+.    ......+.+
T Consensus       162 ~g~~vlDvGcGSGILaIAa~kLGA-~~v~g~DiDp~AV~aa~eNa~~N------~v~~~~~~~~~~~----~~~~~~~~~  230 (300)
T COG2264         162 KGKTVLDVGCGSGILAIAAAKLGA-KKVVGVDIDPQAVEAARENARLN------GVELLVQAKGFLL----LEVPENGPF  230 (300)
T ss_pred             CCCEEEEecCChhHHHHHHHHcCC-ceEEEecCCHHHHHHHHHHHHHc------CCchhhhcccccc----hhhcccCcc
Confidence            456899999999999999999953 36999999999999999987653      4443 22222222    112223689


Q ss_pred             cEEEEeCC-CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          144 TKMFFLFP-DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       144 d~i~~~fp-dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      |.|+.|.- +|..            .+...+.+.|||||.++++=.-.++.+...+.+.+.++
T Consensus       231 DvIVANILA~vl~------------~La~~~~~~lkpgg~lIlSGIl~~q~~~V~~a~~~~gf  281 (300)
T COG2264         231 DVIVANILAEVLV------------ELAPDIKRLLKPGGRLILSGILEDQAESVAEAYEQAGF  281 (300)
T ss_pred             cEEEehhhHHHHH------------HHHHHHHHHcCCCceEEEEeehHhHHHHHHHHHHhCCC
Confidence            99999863 3322            58889999999999999988778888888888876653

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.18  E-value=4.4e-10  Score=102.47  Aligned_cols=113  Identities=17%  Similarity=0.267  Sum_probs=88.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.+|..  ...++|||+++.+++.|++++...      +++|+.|+.+|+.+.+.. . ...+|.
T Consensus       234 ~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~------~~~~~~~~~~d~~~~~~~-~-~~~~D~  303 (374)
T TIGR02085       234 VTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQML------GLDNLSFAALDSAKFATA-Q-MSAPEL  303 (374)
T ss_pred             CCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHHh-c-CCCCCE
Confidence            358999999999999999965  468999999999999999887654      667999999999754432 1 245899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC  199 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~  199 (252)
                      |+++.|-   .  .     ....+++.+. .++|++.+|+..+...++..+...
T Consensus       304 vi~DPPr---~--G-----~~~~~l~~l~-~~~p~~ivyvsc~p~TlaRDl~~L  346 (374)
T TIGR02085       304 VLVNPPR---R--G-----IGKELCDYLS-QMAPKFILYSSCNAQTMAKDIAEL  346 (374)
T ss_pred             EEECCCC---C--C-----CcHHHHHHHH-hcCCCeEEEEEeCHHHHHHHHHHh
Confidence            9987551   1  1     2345777775 479999999999998888888765

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=99.18  E-value=9.7e-11  Score=98.05  Aligned_cols=102  Identities=20%  Similarity=0.312  Sum_probs=83.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCC---CC
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFE---KG  141 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~---~~  141 (252)
                      ..|||||||.|..++.+|...| +..++.+|+++...+.|++++...      ++ ++|+++.+|+.+.++....   .+
T Consensus        47 k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a------g~~~~I~~~~gda~~~l~~l~~~~~~~  120 (205)
T PF01596_consen   47 KRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA------GLDDRIEVIEGDALEVLPELANDGEEG  120 (205)
T ss_dssp             SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT------TGGGGEEEEES-HHHHHHHHHHTTTTT
T ss_pred             ceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc------CCCCcEEEEEeccHhhHHHHHhccCCC
Confidence            4899999999999999999876 689999999999999999988764      55 5799999999877664333   35


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .||.||+.-.    | ++      ...+++.+.+.|+|||.+++
T Consensus       121 ~fD~VFiDa~----K-~~------y~~y~~~~~~ll~~ggvii~  153 (205)
T PF01596_consen  121 QFDFVFIDAD----K-RN------YLEYFEKALPLLRPGGVIIA  153 (205)
T ss_dssp             SEEEEEEEST----G-GG------HHHHHHHHHHHEEEEEEEEE
T ss_pred             ceeEEEEccc----c-cc------hhhHHHHHhhhccCCeEEEE
Confidence            7999999652    1 11      23689999999999999987

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=3.6e-10  Score=91.13  Aligned_cols=128  Identities=20%  Similarity=0.254  Sum_probs=96.8

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ..++||||||+|..+..|++. .|+..++++|+++.+++...+.+...       --++..+++|....+    ..+++|
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n-------~~~~~~V~tdl~~~l----~~~~VD  112 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCN-------RVHIDVVRTDLLSGL----RNESVD  112 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhc-------CCccceeehhHHhhh----ccCCcc
Confidence            348999999999999999998 57888999999999988766655442       234889999976444    458999


Q ss_pred             EEEEeCC---C-Cccc---------cccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFP---D-PHFK---------EKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fp---d-P~~k---------~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      .+..|.|   . +.+.         ......|-+...++.++-.+|.|.|.+|+.+--.+-...+...+...+
T Consensus       113 vLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~p~ei~k~l~~~g  185 (209)
T KOG3191|consen  113 VLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANKPKEILKILEKKG  185 (209)
T ss_pred             EEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcCHHHHHHHHhhcc
Confidence            9999865   1 1111         123445667778999999999999999999877777777777555443

>PLN02476 O-methyltransferase

Probab=99.17  E-value=1.8e-10  Score=100.27  Aligned_cols=103  Identities=13%  Similarity=0.138  Sum_probs=83.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC---CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF---EK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~---~~  140 (252)
                      ...|||||||+|.+++.+|...| +..++++|+++++++.|++++...      ++ ++|+++.+|+.+.|+...   ..
T Consensus       119 ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a------Gl~~~I~li~GdA~e~L~~l~~~~~~  192 (278)
T PLN02476        119 AERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA------GVSHKVNVKHGLAAESLKSMIQNGEG  192 (278)
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHHHHhcccC
Confidence            45899999999999999999865 668999999999999999988764      55 489999999988775432   13


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ++||.|++.-+-+     .      ...+++.+.+.|+|||.|++
T Consensus       193 ~~FD~VFIDa~K~-----~------Y~~y~e~~l~lL~~GGvIV~  226 (278)
T PLN02476        193 SSYDFAFVDADKR-----M------YQDYFELLLQLVRVGGVIVM  226 (278)
T ss_pred             CCCCEEEECCCHH-----H------HHHHHHHHHHhcCCCcEEEE
Confidence            6899999854311     1      34699999999999999877

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.17  E-value=1.4e-09  Score=92.01  Aligned_cols=144  Identities=15%  Similarity=0.166  Sum_probs=87.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++..  ..++|+|+++.|++.|++++...      +. .++.+..+|+. .     .++++|
T Consensus        64 ~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~-~-----~~~~fD  129 (230)
T PRK07580         64 GLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEA------GLAGNITFEVGDLE-S-----LLGRFD  129 (230)
T ss_pred             CCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhc------CCccCcEEEEcCch-h-----ccCCcC
Confidence            4589999999999999999874  46999999999999998876543      33 57999999943 1     256899


Q ss_pred             EEEEeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCcc
Q 025470          145 KMFFLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPV  219 (252)
Q Consensus       145 ~i~~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  219 (252)
                      .|++..     |++..           ..+++.+.+.+++++.+. ...... .......+.  ..|....     ..+.
T Consensus       130 ~v~~~~~l~~~~~~~~-----------~~~l~~l~~~~~~~~~i~-~~~~~~-~~~~~~~l~--~~~~~~~-----~~~~  189 (230)
T PRK07580        130 TVVCLDVLIHYPQEDA-----------ARMLAHLASLTRGSLIFT-FAPYTP-LLALLHWIG--GLFPGPS-----RTTR  189 (230)
T ss_pred             EEEEcchhhcCCHHHH-----------HHHHHHHHhhcCCeEEEE-ECCccH-HHHHHHHhc--cccCCcc-----CCCC
Confidence            998643     33321           247777777665444333 222222 111222221  1121110     0011


Q ss_pred             ccCCCCCCHHHHHHHHcCCCeEEEE
Q 025470          220 VKLLSSATEEGQKVARNGGQTFQAV  244 (252)
Q Consensus       220 ~~~~~~~t~~e~~~~~~G~~i~~~~  244 (252)
                      . ......+++......|.++....
T Consensus       190 ~-~~~~~~~~~~~l~~~Gf~~~~~~  213 (230)
T PRK07580        190 I-YPHREKGIRRALAAAGFKVVRTE  213 (230)
T ss_pred             c-cccCHHHHHHHHHHCCCceEeee
Confidence            0 11233467777888888876654

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.16  E-value=1.3e-09  Score=90.36  Aligned_cols=153  Identities=14%  Similarity=0.082  Sum_probs=92.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++... ...++|||+++.+++.|+.             .++.++++|+.+.++ .++++++|.
T Consensus        14 ~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-------------~~~~~~~~d~~~~l~-~~~~~sfD~   78 (194)
T TIGR02081        14 GSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-------------RGVNVIQGDLDEGLE-AFPDKSFDY   78 (194)
T ss_pred             CCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-------------cCCeEEEEEhhhccc-ccCCCCcCE
Confidence            4589999999999999998763 5678999999999876542             146788888764332 256789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccc--cccccCccccCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTK--EELEADPVVKLL  223 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~p~~~~~  223 (252)
                      |+++.+-.|...        ...+++++.++   +|.+++...+..+.......+.. ..+.....  ..+...+. ...
T Consensus        79 Vi~~~~l~~~~d--------~~~~l~e~~r~---~~~~ii~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~  145 (194)
T TIGR02081        79 VILSQTLQATRN--------PEEILDEMLRV---GRHAIVSFPNFGYWRVRWSILTK-GRMPVTGELPYDWYNTPN-IHF  145 (194)
T ss_pred             EEEhhHhHcCcC--------HHHHHHHHHHh---CCeEEEEcCChhHHHHHHHHHhC-CccccCCCCCccccCCCC-ccc
Confidence            998764333221        12467776665   45555655554333322222221 11111100  00111111 112


Q ss_pred             CCCCHHHHHHHHcCCCeEEEEEE
Q 025470          224 SSATEEGQKVARNGGQTFQAVFR  246 (252)
Q Consensus       224 ~~~t~~e~~~~~~G~~i~~~~~~  246 (252)
                      ....++.+.....|.++-...+.
T Consensus       146 ~s~~~~~~ll~~~Gf~v~~~~~~  168 (194)
T TIGR02081       146 CTIADFEDLCGELNLRILDRAAF  168 (194)
T ss_pred             CcHHHHHHHHHHCCCEEEEEEEe
Confidence            45557889999999999877765

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PRK06202 hypothetical protein; Provisional

Probab=99.16  E-value=1.9e-10  Score=98.02  Aligned_cols=101  Identities=15%  Similarity=0.183  Sum_probs=70.9

Q ss_pred             CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ...|||||||+|.++..|++.    .++..++|+|+++.|++.|+++.         ...++.+...++. .++  ++++
T Consensus        61 ~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---------~~~~~~~~~~~~~-~l~--~~~~  128 (232)
T PRK06202         61 PLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---------RRPGVTFRQAVSD-ELV--AEGE  128 (232)
T ss_pred             CcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---------ccCCCeEEEEecc-ccc--ccCC
Confidence            458999999999999998864    45679999999999999887643         2235666666654 343  3578


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++|.|++++.--+....      ....+++++.++++  |.+++.
T Consensus       129 ~fD~V~~~~~lhh~~d~------~~~~~l~~~~r~~~--~~~~i~  165 (232)
T PRK06202        129 RFDVVTSNHFLHHLDDA------EVVRLLADSAALAR--RLVLHN  165 (232)
T ss_pred             CccEEEECCeeecCChH------HHHHHHHHHHHhcC--eeEEEe
Confidence            99999987643222110      01259999999998  444443

>PHA03412 putative methyltransferase; Provisional

Probab=99.13  E-value=4.4e-10  Score=95.27  Aligned_cols=102  Identities=12%  Similarity=0.187  Sum_probs=74.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHC---CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF---PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~---p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...|||+|||+|.+++.+++..   +...++|||+++.+++.|+.+           ..++.++.+|+.. ..  + +++
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-----------~~~~~~~~~D~~~-~~--~-~~~  114 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-----------VPEATWINADALT-TE--F-DTL  114 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-----------ccCCEEEEcchhc-cc--c-cCC
Confidence            4589999999999999999874   356899999999999888754           2358899999853 22  2 568


Q ss_pred             ccEEEEeCCCCcccccccc----ccccCHHHHHHHHHhhcCCcE
Q 025470          143 LTKMFFLFPDPHFKEKNHR----RRVISPHLLDEYAYVLGVGGI  182 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~k----rr~~~~~~l~~~~~~LkpgG~  182 (252)
                      +|.|+.|.|---.+..+.+    ...+...+++.+.+++++|+.
T Consensus       115 FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~  158 (241)
T PHA03412        115 FDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF  158 (241)
T ss_pred             ccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence            9999999763322222222    224456688888886666664

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=99.13  E-value=5.4e-10  Score=95.46  Aligned_cols=115  Identities=16%  Similarity=0.175  Sum_probs=82.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe----CCcccccCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR----TNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~----~da~~~l~~~~~~~s  142 (252)
                      ..+||+|||+|.+++.++...|.+.+++||.|+.++..|.+|+..++     -...+.+++    .|+.  .+.-+..+.
T Consensus       150 ~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~-----l~g~i~v~~~~me~d~~--~~~~l~~~~  222 (328)
T KOG2904|consen  150 THILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLK-----LSGRIEVIHNIMESDAS--DEHPLLEGK  222 (328)
T ss_pred             ceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHh-----hcCceEEEecccccccc--cccccccCc
Confidence            37999999999999999999999999999999999999999987762     223455553    4432  333355788


Q ss_pred             ccEEEEeCCCCcccc-----------cccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          143 LTKMFFLFPDPHFKE-----------KNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~-----------~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      +|.++.|.|  +.+.           .+..+.         -+..-++.-+.|.|+|||.+.|.++..
T Consensus       223 ~dllvsNPP--YI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~  288 (328)
T KOG2904|consen  223 IDLLVSNPP--YIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER  288 (328)
T ss_pred             eeEEecCCC--cccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc
Confidence            999988865  1111           111110         111236777889999999999998843

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=99.13  E-value=2e-10  Score=101.83  Aligned_cols=109  Identities=17%  Similarity=0.289  Sum_probs=88.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~d  144 (252)
                      +..|||-=||+|.+++.....  +++++|+|++..|++.|..|+...      ++....++.. ||. .++  |++.++|
T Consensus       198 G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y------~i~~~~~~~~~Da~-~lp--l~~~~vd  266 (347)
T COG1041         198 GELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYY------GIEDYPVLKVLDAT-NLP--LRDNSVD  266 (347)
T ss_pred             CCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhh------CcCceeEEEecccc-cCC--CCCCccc
Confidence            559999999999999999999  889999999999999999998764      5677777776 987 577  8788899


Q ss_pred             EEEEeCCCCccccccccccc----cCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRV----ISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~----~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|...   |..-.+-.....    ...++|+.++.+||+||.++|.++
T Consensus       267 aIatD---PPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p  311 (347)
T COG1041         267 AIATD---PPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP  311 (347)
T ss_pred             eEEec---CCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence            99874   443332211111    246799999999999999999998

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.12  E-value=9.1e-10  Score=89.36  Aligned_cols=98  Identities=17%  Similarity=0.177  Sum_probs=72.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++++  ...++|+|+++.+++.+++++.        ..+|+.++++|+.+ ++  +++..+|.
T Consensus        14 ~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~--------~~~~v~ii~~D~~~-~~--~~~~~~d~   80 (169)
T smart00650       14 GDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFA--------AADNLTVIHGDALK-FD--LPKLQPYK   80 (169)
T ss_pred             cCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhc--------cCCCEEEEECchhc-CC--ccccCCCE
Confidence            458999999999999999998  5689999999999998877652        24689999999874 33  44456899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHh--hcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYV--LGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~--LkpgG~l~~~t  187 (252)
                      |+.|.|-..           ...++..+...  +.++|.|.++.
T Consensus        81 vi~n~Py~~-----------~~~~i~~~l~~~~~~~~~~l~~q~  113 (169)
T smart00650       81 VVGNLPYNI-----------STPILFKLLEEPPAFRDAVLMVQK  113 (169)
T ss_pred             EEECCCccc-----------HHHHHHHHHhcCCCcceEEEEEEH
Confidence            988865322           12455555433  34788888865

>PLN02672 methionine S-methyltransferase

Probab=99.10  E-value=1.6e-09  Score=109.06  Aligned_cols=134  Identities=13%  Similarity=0.206  Sum_probs=92.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc----------CCCCcccEEEEeCCcccccCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS----------NPGQYQNISVVRTNSMKYIPN  136 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~----------~~~~~~nv~~~~~da~~~l~~  136 (252)
                      ..|||||||+|.+++.+|+.+|...++|+|+|+.+++.|+.|+......          ......+|.|+++|+...+..
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~  199 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD  199 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence            3799999999999999999999889999999999999999988653100          001235799999998643311


Q ss_pred             cCCCCcccEEEEeCC-----C-----Cccccccc----------cccc-----------cCHHHHHHHHHhhcCCcEEEE
Q 025470          137 YFEKGQLTKMFFLFP-----D-----PHFKEKNH----------RRRV-----------ISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       137 ~~~~~s~d~i~~~fp-----d-----P~~k~~h~----------krr~-----------~~~~~l~~~~~~LkpgG~l~~  185 (252)
                        ....+|.|+.|.|     +     |-.+ .|.          .--+           ....++.+..++|+|||.+++
T Consensus       200 --~~~~fDlIVSNPPYI~~~e~~~l~~eV~-~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~l  276 (1082)
T PLN02672        200 --NNIELDRIVGCIPQILNPNPEAMSKLVT-ENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIF  276 (1082)
T ss_pred             --cCCceEEEEECCCcCCCcchhhcChhhh-hccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence              0136999999876     1     1100 010          0011           115688899999999999999


Q ss_pred             EeCchHHHHHHH-HHHhcCC
Q 025470          186 ITDVEELGDWMR-SCLENHP  204 (252)
Q Consensus       186 ~td~~~~~~~~~-~~~~~~~  204 (252)
                      -... ...+.+. +.+...+
T Consensus       277 EiG~-~q~~~v~~~l~~~~g  295 (1082)
T PLN02672        277 NMGG-RPGQAVCERLFERRG  295 (1082)
T ss_pred             EECc-cHHHHHHHHHHHHCC
Confidence            8864 4555555 4565543

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=99.10  E-value=5.1e-10  Score=100.12  Aligned_cols=123  Identities=15%  Similarity=0.196  Sum_probs=82.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc----ccEEEEeCCccc-ccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY----QNISVVRTNSMK-YIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~----~nv~~~~~da~~-~l~~~~~~  140 (252)
                      +..|||||||.|.=+....... -..++|+||+...|+.|+++...++.......    -...|+.+|... .+...+.+
T Consensus        63 ~~~VLDl~CGkGGDL~Kw~~~~-i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   63 GLTVLDLCCGKGGDLQKWQKAK-IKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             T-EEEEET-TTTTTHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCeEEEecCCCchhHHHHHhcC-CCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            5699999999999888888775 35799999999999999999866542211111    246778887642 23344555


Q ss_pred             C--cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025470          141 G--QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG  193 (252)
Q Consensus       141 ~--s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~  193 (252)
                      .  .+|.|.+.|.-...-....+-    ..+|+.++..|+|||.|+.+|.+.+..
T Consensus       142 ~~~~FDvVScQFalHY~Fese~~a----r~~l~Nvs~~Lk~GG~FIgT~~d~~~i  192 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFESEEKA----RQFLKNVSSLLKPGGYFIGTTPDSDEI  192 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGSSHHHH----HHHHHHHHHTEEEEEEEEEEEE-HHHH
T ss_pred             cCCCcceeehHHHHHHhcCCHHHH----HHHHHHHHHhcCCCCEEEEEecCHHHH
Confidence            4  999999998654432222111    259999999999999999999775443

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.10  E-value=3.4e-10  Score=99.58  Aligned_cols=113  Identities=19%  Similarity=0.214  Sum_probs=81.5

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...|||||||+|.+++..++... ..++|+|+++.+++.|++|+...      ++.. +.+  ....     ......+
T Consensus       161 ~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N------~~~~~~~v--~~~~-----~~~~~~~  226 (295)
T PF06325_consen  161 PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELN------GVEDRIEV--SLSE-----DLVEGKF  226 (295)
T ss_dssp             TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHT------T-TTCEEE--SCTS-----CTCCS-E
T ss_pred             CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHc------CCCeeEEE--EEec-----ccccccC
Confidence            456999999999999999999853 47999999999999999987653      5544 333  2211     1224889


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      |.|+.|.-.+-.           ..++..+.++|+|||.++++=--.+..+.+.+.+..
T Consensus       227 dlvvANI~~~vL-----------~~l~~~~~~~l~~~G~lIlSGIl~~~~~~v~~a~~~  274 (295)
T PF06325_consen  227 DLVVANILADVL-----------LELAPDIASLLKPGGYLILSGILEEQEDEVIEAYKQ  274 (295)
T ss_dssp             EEEEEES-HHHH-----------HHHHHHCHHHEEEEEEEEEEEEEGGGHHHHHHHHHT
T ss_pred             CEEEECCCHHHH-----------HHHHHHHHHhhCCCCEEEEccccHHHHHHHHHHHHC
Confidence            999998632221           247777888999999999976666677778888864

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=99.10  E-value=9.1e-10  Score=90.39  Aligned_cols=117  Identities=19%  Similarity=0.245  Sum_probs=83.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCe---------EEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVL---------MIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIP  135 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~---------~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~  135 (252)
                      ...+||--||+|.++++.|...++..         ++|+|+++.+++.|+.|+...      +. ..+.+.+.|+.. ++
T Consensus        29 ~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a------g~~~~i~~~~~D~~~-l~  101 (179)
T PF01170_consen   29 GDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA------GVEDYIDFIQWDARE-LP  101 (179)
T ss_dssp             TS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT------T-CGGEEEEE--GGG-GG
T ss_pred             CCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc------ccCCceEEEecchhh-cc
Confidence            45899999999999999999877766         999999999999999998764      33 458999999974 55


Q ss_pred             ccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          136 NYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       136 ~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                        +.++++|.|+.|.|=--.-..+..-.-+...+++++.++|++ ..+++.+.++.+
T Consensus       102 --~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~~~~~~  155 (179)
T PF01170_consen  102 --LPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKP-RAVFLTTSNREL  155 (179)
T ss_dssp             --GTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEESCCCH
T ss_pred             --cccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEECCHHH
Confidence              567899999998653221111111233456789999999999 666666766554

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.07  E-value=5.5e-09  Score=92.96  Aligned_cols=151  Identities=12%  Similarity=0.141  Sum_probs=89.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.|++.|+++...... ...+..++.|..+|+.+ +     ++++|.
T Consensus       145 ~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~-~~~~~~~~~f~~~Dl~~-l-----~~~fD~  215 (315)
T PLN02585        145 GVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALA-ALPPEVLPKFEANDLES-L-----SGKYDT  215 (315)
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhccc-ccccccceEEEEcchhh-c-----CCCcCE
Confidence            458999999999999999987  57899999999999999887643200 01123578899888642 2     467888


Q ss_pred             EEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccc
Q 025470          146 MFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVV  220 (252)
Q Consensus       146 i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~  220 (252)
                      |++.     +|+...           ..+++.+.+ +.+||. ++..........+...+...  |...     ..... 
T Consensus       216 Vv~~~vL~H~p~~~~-----------~~ll~~l~~-l~~g~l-iIs~~p~~~~~~~l~~~g~~--~~g~-----~~~~r-  274 (315)
T PLN02585        216 VTCLDVLIHYPQDKA-----------DGMIAHLAS-LAEKRL-IISFAPKTLYYDILKRIGEL--FPGP-----SKATR-  274 (315)
T ss_pred             EEEcCEEEecCHHHH-----------HHHHHHHHh-hcCCEE-EEEeCCcchHHHHHHHHHhh--cCCC-----CcCce-
Confidence            8643     333211           136666664 455555 44433222222222222211  1100     00000 


Q ss_pred             cCCCCCCHHHHHHHHcCCCeEEEEEE
Q 025470          221 KLLSSATEEGQKVARNGGQTFQAVFR  246 (252)
Q Consensus       221 ~~~~~~t~~e~~~~~~G~~i~~~~~~  246 (252)
                      .+.....++++.....|.++.....+
T Consensus       275 ~y~~s~eel~~lL~~AGf~v~~~~~~  300 (315)
T PLN02585        275 AYLHAEADVERALKKAGWKVARREMT  300 (315)
T ss_pred             eeeCCHHHHHHHHHHCCCEEEEEEEe
Confidence            11234567888888999988655443

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=99.04  E-value=1.8e-09  Score=90.82  Aligned_cols=133  Identities=14%  Similarity=0.167  Sum_probs=84.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---CC--------------------------
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---NP--------------------------  117 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---~~--------------------------  117 (252)
                      ..+|||||-+|.+++.+|+.+....++|+||++..|+.|+.++...-+.   ..                          
T Consensus        60 ~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~  139 (288)
T KOG2899|consen   60 KQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRNEADRAFTT  139 (288)
T ss_pred             ceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccccccccccc
Confidence            3799999999999999999998889999999999999998876432110   00                          


Q ss_pred             CCcccEEEEeCCcc----cccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe-CchHH
Q 025470          118 GQYQNISVVRTNSM----KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEEL  192 (252)
Q Consensus       118 ~~~~nv~~~~~da~----~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~  192 (252)
                      .-..|+.|...+..    ++|  .+....+|.|.+.--.-|..--++..-+  ..|++.+.++|.|||+|++.- .|+.|
T Consensus       140 ~~p~n~~f~~~n~vle~~dfl--~~~~~~fDiIlcLSiTkWIHLNwgD~GL--~~ff~kis~ll~pgGiLvvEPQpWksY  215 (288)
T KOG2899|consen  140 DFPDNVWFQKENYVLESDDFL--DMIQPEFDIILCLSITKWIHLNWGDDGL--RRFFRKISSLLHPGGILVVEPQPWKSY  215 (288)
T ss_pred             cCCcchhcccccEEEecchhh--hhccccccEEEEEEeeeeEecccccHHH--HHHHHHHHHhhCcCcEEEEcCCchHHH
Confidence            00114444333322    112  1335678888754434443322222111  259999999999999999864 34444


Q ss_pred             H--HHHHHHHhcC
Q 025470          193 G--DWMRSCLENH  203 (252)
Q Consensus       193 ~--~~~~~~~~~~  203 (252)
                      -  ..+.+.+..+
T Consensus       216 ~kaar~~e~~~~n  228 (288)
T KOG2899|consen  216 KKAARRSEKLAAN  228 (288)
T ss_pred             HHHHHHHHHhhcC
Confidence            3  3344445444

>PLN02823 spermine synthase

Probab=99.04  E-value=4e-09  Score=94.57  Aligned_cols=130  Identities=11%  Similarity=0.105  Sum_probs=96.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||.||+|.|..+..+++..+...++.||+++++++.|++.+....  ....-++++++.+|+...+..  .++.+|.|
T Consensus       105 k~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~--~~~~dprv~v~~~Da~~~L~~--~~~~yDvI  180 (336)
T PLN02823        105 KTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNR--EAFCDKRLELIINDARAELEK--RDEKFDVI  180 (336)
T ss_pred             CEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhccccc--ccccCCceEEEEChhHHHHhh--CCCCccEE
Confidence            37999999999999988887667789999999999999987653210  001246899999999877753  35789999


Q ss_pred             EEeCCCCccccccccccccCHHHHH-HHHHhhcCCcEEEEEeCc------hHHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLD-EYAYVLGVGGIIYTITDV------EELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~-~~~~~LkpgG~l~~~td~------~~~~~~~~~~~~~  202 (252)
                      ++..+||+...  .-..+.+.+|++ .+.+.|+|||.+++..-.      .+....+.+.+.+
T Consensus       181 i~D~~dp~~~~--~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s~~~~~~~~~~~~i~~tl~~  241 (336)
T PLN02823        181 IGDLADPVEGG--PCYQLYTKSFYERIVKPKLNPGGIFVTQAGPAGILTHKEVFSSIYNTLRQ  241 (336)
T ss_pred             EecCCCccccC--cchhhccHHHHHHHHHHhcCCCcEEEEeccCcchhccHHHHHHHHHHHHH
Confidence            99988887321  112366778998 999999999999876422      3344455555543

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.01  E-value=5e-09  Score=94.82  Aligned_cols=112  Identities=16%  Similarity=0.287  Sum_probs=85.7

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-----C---C
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-----F---E  139 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-----~---~  139 (252)
                      .|||+|||+|.+++.+|+..  ..++|||+++.+++.|++++...      ++.|+.|+.+|+.+.+...     +   .
T Consensus       200 ~vlDl~~G~G~~sl~la~~~--~~v~~vE~~~~av~~a~~n~~~~------~~~~v~~~~~d~~~~~~~~~~~~~~~~~~  271 (353)
T TIGR02143       200 DLLELYCGNGNFSLALAQNF--RRVLATEIAKPSVNAAQYNIAAN------NIDNVQIIRMSAEEFTQAMNGVREFRRLK  271 (353)
T ss_pred             cEEEEeccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEEcCHHHHHHHHhhcccccccc
Confidence            69999999999999999985  37999999999999999987653      7789999999997655321     1   0


Q ss_pred             -----CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          140 -----KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       140 -----~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                           ...+|.|++..|-   + .      ..+.+++.+.   +|++.+|+.+|...++..+....
T Consensus       272 ~~~~~~~~~d~v~lDPPR---~-G------~~~~~l~~l~---~~~~ivYvsC~p~tlaRDl~~L~  324 (353)
T TIGR02143       272 GIDLKSYNCSTIFVDPPR---A-G------LDPDTCKLVQ---AYERILYISCNPETLKANLEQLS  324 (353)
T ss_pred             ccccccCCCCEEEECCCC---C-C------CcHHHHHHHH---cCCcEEEEEcCHHHHHHHHHHHh
Confidence                 1136888886552   1 1      1234656554   48999999999999998888655

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.01  E-value=5.4e-09  Score=94.90  Aligned_cols=113  Identities=15%  Similarity=0.227  Sum_probs=85.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-------
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-------  139 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-------  139 (252)
                      ..+||++||+|.+++.+|+..  ..++|||+++.+++.|++++...      +++|+.|+.+|+...+.....       
T Consensus       208 ~~vLDl~~G~G~~sl~la~~~--~~v~~vE~~~~ai~~a~~N~~~~------~~~~v~~~~~d~~~~l~~~~~~~~~~~~  279 (362)
T PRK05031        208 GDLLELYCGNGNFTLALARNF--RRVLATEISKPSVAAAQYNIAAN------GIDNVQIIRMSAEEFTQAMNGVREFNRL  279 (362)
T ss_pred             CeEEEEeccccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHHHh------CCCcEEEEECCHHHHHHHHhhccccccc
Confidence            369999999999999999885  47999999999999999887654      678999999999765542111       


Q ss_pred             ------CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          140 ------KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       140 ------~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                            ...+|.|++..|   .. .      ....+++.+.+   |++.+|+.+|...++..+....
T Consensus       280 ~~~~~~~~~~D~v~lDPP---R~-G------~~~~~l~~l~~---~~~ivyvSC~p~tlarDl~~L~  333 (362)
T PRK05031        280 KGIDLKSYNFSTIFVDPP---RA-G------LDDETLKLVQA---YERILYISCNPETLCENLETLS  333 (362)
T ss_pred             ccccccCCCCCEEEECCC---CC-C------CcHHHHHHHHc---cCCEEEEEeCHHHHHHHHHHHc
Confidence                  124798888554   21 1      22356666554   7999999999988887777554

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=99.00  E-value=2.5e-09  Score=91.93  Aligned_cols=104  Identities=17%  Similarity=0.209  Sum_probs=83.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC----C
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE----K  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~----~  140 (252)
                      ...|||||++.|..++.+|...| +..++.+|+++...+.|+.++...     +-.++|.++.+|+.+.|+....    .
T Consensus        80 ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a-----g~~~~I~~~~G~a~e~L~~l~~~~~~~  154 (247)
T PLN02589         80 AKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA-----GVAHKIDFREGPALPVLDQMIEDGKYH  154 (247)
T ss_pred             CCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC-----CCCCceEEEeccHHHHHHHHHhccccC
Confidence            45899999999999999999864 779999999999999999888764     2246899999999887765332    3


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ++||.||+.-   + |.       -...+++.+.+.|+|||.|++
T Consensus       155 ~~fD~iFiDa---d-K~-------~Y~~y~~~~l~ll~~GGviv~  188 (247)
T PLN02589        155 GTFDFIFVDA---D-KD-------NYINYHKRLIDLVKVGGVIGY  188 (247)
T ss_pred             CcccEEEecC---C-HH-------HhHHHHHHHHHhcCCCeEEEE
Confidence            6899999853   2 11       134689999999999999876

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.97  E-value=4.2e-09  Score=87.75  Aligned_cols=99  Identities=21%  Similarity=0.396  Sum_probs=74.6

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++.+|||+.||.|.|++.+|+..+...++++|+++.+++...+++...      ++. ++.++++|+.+.++    .+.+
T Consensus       101 ~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lN------kv~~~i~~~~~D~~~~~~----~~~~  170 (200)
T PF02475_consen  101 PGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLN------KVENRIEVINGDAREFLP----EGKF  170 (200)
T ss_dssp             TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHT------T-TTTEEEEES-GGG-------TT-E
T ss_pred             cceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHc------CCCCeEEEEcCCHHHhcC----cccc
Confidence            366999999999999999999777889999999999999999988664      443 58999999985433    7889


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      |.|+++.|.--.            .||..+...+++||.+++
T Consensus       171 drvim~lp~~~~------------~fl~~~~~~~~~~g~ihy  200 (200)
T PF02475_consen  171 DRVIMNLPESSL------------EFLDAALSLLKEGGIIHY  200 (200)
T ss_dssp             EEEEE--TSSGG------------GGHHHHHHHEEEEEEEEE
T ss_pred             CEEEECChHHHH------------HHHHHHHHHhcCCcEEEC
Confidence            999998874332            499999999999999874

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.96  E-value=3.4e-08  Score=87.93  Aligned_cols=136  Identities=13%  Similarity=0.094  Sum_probs=84.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEe-CCcccccCcc-CCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVR-TNSMKYIPNY-FEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~-~da~~~l~~~-~~~~s  142 (252)
                      ...+||||||+|.+...++.+.++..++|+|+++.+++.|+.++...     .++ .+|.++. .|....+... .+.+.
T Consensus       115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~N-----p~l~~~I~~~~~~~~~~i~~~i~~~~~~  189 (321)
T PRK11727        115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISAN-----PGLNGAIRLRLQKDSKAIFKGIIHKNER  189 (321)
T ss_pred             CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc-----cCCcCcEEEEEccchhhhhhcccccCCc
Confidence            46899999999999999999988999999999999999999988652     123 3577754 4433222222 23568


Q ss_pred             ccEEEEeCCCCccccc-----ccccccc--------CHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025470          143 LTKMFFLFPDPHFKEK-----NHRRRVI--------SPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~-----h~krr~~--------~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~  209 (252)
                      ||.|++|.|---....     ..+.|-.        .-.|=.....++.+||.+.|...   +...........++|..+
T Consensus       190 fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe~~fi~~---mi~eS~~~~~~~gwftsm  266 (321)
T PRK11727        190 FDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGEVAFIKR---MIEESKAFAKQVLWFTSL  266 (321)
T ss_pred             eEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcEeeeehH---hhHHHHHHHhhCcEEEEE
Confidence            9999998762211110     0000000        00111234566779999988763   344444444445555444

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.96  E-value=1e-08  Score=84.86  Aligned_cols=108  Identities=19%  Similarity=0.161  Sum_probs=76.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCc-c
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQ-L  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s-~  143 (252)
                      +..|||++||+|.+++.++.+.. ..+++||+++.+++.+++++...      +. .++.++++|+...+........ +
T Consensus        50 g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~------~~~~~~~~~~~D~~~~l~~~~~~~~~~  122 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALL------KSGEQAEVVRNSALRALKFLAKKPTFD  122 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHh------CCcccEEEEehhHHHHHHHhhccCCCc
Confidence            45899999999999999999964 37999999999999999888765      44 3799999999655543222233 4


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeCc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITDV  189 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td~  189 (252)
                      |.|++   ||.+...      .....+..+..  +|+++|.+++.+..
T Consensus       123 dvv~~---DPPy~~~------~~~~~l~~l~~~~~l~~~~iiv~E~~~  161 (189)
T TIGR00095       123 NVIYL---DPPFFNG------ALQALLELCENNWILEDTVLIVVEEDR  161 (189)
T ss_pred             eEEEE---CcCCCCC------cHHHHHHHHHHCCCCCCCeEEEEEecC
Confidence            55554   4443321      12345555543  68899998887643

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.95  E-value=7.9e-09  Score=94.32  Aligned_cols=103  Identities=13%  Similarity=0.043  Sum_probs=82.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||++||+|.+++.+|...+...++++|+++.+++.+++|+...      ++.++.+.++|+...+..   ...+|.|
T Consensus        59 ~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N------~~~~~~v~~~Da~~~l~~---~~~fD~V  129 (382)
T PRK04338         59 ESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELN------GLENEKVFNKDANALLHE---ERKFDVV  129 (382)
T ss_pred             CEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCceEEEhhhHHHHHhh---cCCCCEE
Confidence            4799999999999999999876568999999999999999988654      677888999999754432   4569999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCch
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDVE  190 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~~  190 (252)
                      .++.|    ..        ...++....+.+++||.++++ ||..
T Consensus       130 ~lDP~----Gs--------~~~~l~~al~~~~~~gilyvSAtD~~  162 (382)
T PRK04338        130 DIDPF----GS--------PAPFLDSAIRSVKRGGLLCVTATDTA  162 (382)
T ss_pred             EECCC----CC--------cHHHHHHHHHHhcCCCEEEEEecCch
Confidence            98643    11        125888878889999999996 4443

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.94  E-value=6.3e-09  Score=88.18  Aligned_cols=108  Identities=12%  Similarity=0.050  Sum_probs=75.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHH------HHhhcCCCCcccEEEEeCCcccccCcc-C
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERIL------ALRVSNPGQYQNISVVRTNSMKYIPNY-F  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~------~~~~~~~~~~~nv~~~~~da~~~l~~~-~  138 (252)
                      ...||..|||.|.-+..||.+  +..|+|+|+|+.+++.+.+...      ..+........+|.++++|+.+ ++.. -
T Consensus        44 ~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~-l~~~~~  120 (226)
T PRK13256         44 SSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFN-LPKIAN  120 (226)
T ss_pred             CCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcC-CCcccc
Confidence            458999999999999999999  7789999999999988754210      0000001123479999999864 4310 1


Q ss_pred             CCCcccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          139 EKGQLTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       139 ~~~s~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+.+|.|+-     .+|...           ...+++.+.++|+|||.+++.+
T Consensus       121 ~~~~fD~VyDra~~~Alpp~~-----------R~~Y~~~l~~lL~pgg~llll~  163 (226)
T PRK13256        121 NLPVFDIWYDRGAYIALPNDL-----------RTNYAKMMLEVCSNNTQILLLV  163 (226)
T ss_pred             ccCCcCeeeeehhHhcCCHHH-----------HHHHHHHHHHHhCCCcEEEEEE
Confidence            1257888773     232211           2369999999999999998876

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=6.6e-09  Score=84.62  Aligned_cols=116  Identities=13%  Similarity=0.190  Sum_probs=81.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|+|+|||+|.+++..+...| ..++|||+++++++.+++|+.+       ...+|.|+.+|+.+ +     .+.+|.
T Consensus        46 g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~-------l~g~v~f~~~dv~~-~-----~~~~dt  111 (198)
T COG2263          46 GKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEE-------LLGDVEFVVADVSD-F-----RGKFDT  111 (198)
T ss_pred             CCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHh-------hCCceEEEEcchhh-c-----CCccce
Confidence            45799999999999999998865 5799999999999999988765       46689999999874 3     346778


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      ++.|.|.--. .+|..+     .|+....+.-   -.+|- ..+....+++.....+.++
T Consensus       112 vimNPPFG~~-~rhaDr-----~Fl~~Ale~s---~vVYs-iH~a~~~~f~~~~~~~~G~  161 (198)
T COG2263         112 VIMNPPFGSQ-RRHADR-----PFLLKALEIS---DVVYS-IHKAGSRDFVEKFAADLGG  161 (198)
T ss_pred             EEECCCCccc-cccCCH-----HHHHHHHHhh---heEEE-eeccccHHHHHHHHHhcCC
Confidence            8888775543 445544     4665554442   33332 2233355555656666654

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.88  E-value=4.2e-09  Score=88.63  Aligned_cols=96  Identities=15%  Similarity=0.144  Sum_probs=67.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc----cccCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM----KYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~----~~l~~~~~~~s  142 (252)
                      ..++|+|||+|.-++.+|..+  .+|||+|+|+.|++.|.+.            +++...+.-..    +.++..-.++|
T Consensus        35 ~~a~DvG~G~Gqa~~~iae~~--k~VIatD~s~~mL~~a~k~------------~~~~y~~t~~~ms~~~~v~L~g~e~S  100 (261)
T KOG3010|consen   35 RLAWDVGTGNGQAARGIAEHY--KEVIATDVSEAMLKVAKKH------------PPVTYCHTPSTMSSDEMVDLLGGEES  100 (261)
T ss_pred             ceEEEeccCCCcchHHHHHhh--hhheeecCCHHHHHHhhcC------------CCcccccCCccccccccccccCCCcc
Confidence            489999999997777888774  3689999999999877642            22222222110    11221123889


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYT  185 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~  185 (252)
                      +|.|.+--.-.|+.         .+.|.+++.|+||+.| .+.+
T Consensus       101 VDlI~~Aqa~HWFd---------le~fy~~~~rvLRk~Gg~iav  135 (261)
T KOG3010|consen  101 VDLITAAQAVHWFD---------LERFYKEAYRVLRKDGGLIAV  135 (261)
T ss_pred             eeeehhhhhHHhhc---------hHHHHHHHHHHcCCCCCEEEE
Confidence            99999876666764         4579999999999766 5544

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.88  E-value=3.5e-08  Score=91.25  Aligned_cols=119  Identities=17%  Similarity=0.236  Sum_probs=94.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...+||+=||.|.|++.||++  ...|+|+|+++++++.|+++++.      +++.|+.|+.+++.+.....-.....|.
T Consensus       294 ~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~------n~i~N~~f~~~~ae~~~~~~~~~~~~d~  365 (432)
T COG2265         294 GERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAA------NGIDNVEFIAGDAEEFTPAWWEGYKPDV  365 (432)
T ss_pred             CCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHH------cCCCcEEEEeCCHHHHhhhccccCCCCE
Confidence            458999999999999999977  66899999999999999998866      4899999999999875554333457899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      |++..|   .+  .     ..+.+++.+.+ ++|-..+|++++...++..+.......
T Consensus       366 VvvDPP---R~--G-----~~~~~lk~l~~-~~p~~IvYVSCNP~TlaRDl~~L~~~g  412 (432)
T COG2265         366 VVVDPP---RA--G-----ADREVLKQLAK-LKPKRIVYVSCNPATLARDLAILASTG  412 (432)
T ss_pred             EEECCC---CC--C-----CCHHHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhCC
Confidence            998654   11  1     23357776665 588999999999999988887666544

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.87  E-value=1.3e-08  Score=88.82  Aligned_cols=130  Identities=15%  Similarity=0.127  Sum_probs=91.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-ccCccC--CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-YIPNYF--EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-~l~~~~--~~~s  142 (252)
                      ...++|+|||.|.=++..-++.- ..++|+||....|+.|+.+.+.+......-.=.+.|+.+|-.. .|...+  ++-.
T Consensus       118 ~~~~~~LgCGKGGDLlKw~kAgI-~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp~  196 (389)
T KOG1975|consen  118 GDDVLDLGCGKGGDLLKWDKAGI-GEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDPR  196 (389)
T ss_pred             ccccceeccCCcccHhHhhhhcc-cceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCCC
Confidence            45799999999999888877743 3699999999999999998877632111111237888888532 222223  3445


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      +|.|.+.|.....-..-.+-|    .+|+.+++.|+|||+++-++++.+...+-+...
T Consensus       197 fDivScQF~~HYaFetee~ar----~~l~Nva~~LkpGG~FIgTiPdsd~Ii~rlr~~  250 (389)
T KOG1975|consen  197 FDIVSCQFAFHYAFETEESAR----IALRNVAKCLKPGGVFIGTIPDSDVIIKRLRAG  250 (389)
T ss_pred             cceeeeeeeEeeeeccHHHHH----HHHHHHHhhcCCCcEEEEecCcHHHHHHHHHhc
Confidence            999998886554333333322    489999999999999999998877766665555

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=98.87  E-value=2.3e-08  Score=86.15  Aligned_cols=131  Identities=15%  Similarity=0.139  Sum_probs=97.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...||=||-|.|..+..+.+..+...++.||+++.+++.|++-+.....  ...-++++++.+|+...+...- ...+|.
T Consensus        77 p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~--~~~d~r~~i~~~Dg~~~l~~~~-~~~yDv  153 (246)
T PF01564_consen   77 PKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE--GLDDPRVRIIIGDGRKFLKETQ-EEKYDV  153 (246)
T ss_dssp             T-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT--TGGSTTEEEEESTHHHHHHTSS-ST-EEE
T ss_pred             cCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc--ccCCCceEEEEhhhHHHHHhcc-CCcccE
Confidence            3489999999999999998876677999999999999999876654311  1234689999999987776432 228999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~~  203 (252)
                      |++..+||......    +.+.+|++.+.+.|+|||.+++....    ......+...+...
T Consensus       154 Ii~D~~dp~~~~~~----l~t~ef~~~~~~~L~~~Gv~v~~~~~~~~~~~~~~~i~~tl~~~  211 (246)
T PF01564_consen  154 IIVDLTDPDGPAPN----LFTREFYQLCKRRLKPDGVLVLQAGSPFLHPELFKSILKTLRSV  211 (246)
T ss_dssp             EEEESSSTTSCGGG----GSSHHHHHHHHHHEEEEEEEEEEEEETTTTHHHHHHHHHHHHTT
T ss_pred             EEEeCCCCCCCccc----ccCHHHHHHHHhhcCCCcEEEEEccCcccchHHHHHHHHHHHHh
Confidence            99999887643222    77889999999999999999997633    34455555556543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=98.85  E-value=8.7e-09  Score=85.49  Aligned_cols=104  Identities=14%  Similarity=0.229  Sum_probs=77.1

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCcc-----CCCC
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNY-----FEKG  141 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~-----~~~~  141 (252)
                      .|||||||+|.++..+|+.+|...+.-.|+++..+......+...      +++|+ .-+..|+...-..+     +..+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~------~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~  101 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA------GLPNVRPPLALDVSAPPWPWELPAPLSPE  101 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc------CCcccCCCeEeecCCCCCccccccccCCC
Confidence            599999999999999999999999999999998876666655443      66675 33445554321111     2356


Q ss_pred             cccEEEE---eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFF---LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~---~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++|.|+.   .+-.||.-         ...+++.+.++|++||.|++-
T Consensus       102 ~~D~i~~~N~lHI~p~~~---------~~~lf~~a~~~L~~gG~L~~Y  140 (204)
T PF06080_consen  102 SFDAIFCINMLHISPWSA---------VEGLFAGAARLLKPGGLLFLY  140 (204)
T ss_pred             CcceeeehhHHHhcCHHH---------HHHHHHHHHHhCCCCCEEEEe
Confidence            8999984   23466642         357999999999999999884

The function of this family is unknown.

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.85  E-value=8.2e-08  Score=82.18  Aligned_cols=124  Identities=15%  Similarity=0.168  Sum_probs=98.2

Q ss_pred             CCCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           64 SKKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        64 ~~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      .++.+|||-|+|+|.++.++|+. .|-..++-.|+.....+.|.+.++..     .--+|+.+.+-|+.. .--...+..
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~h-----gi~~~vt~~hrDVc~-~GF~~ks~~  177 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREH-----GIGDNVTVTHRDVCG-SGFLIKSLK  177 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHh-----CCCcceEEEEeeccc-CCccccccc
Confidence            34679999999999999999999 57788999999998887777766654     234789999999752 211122678


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEEEeCchHHHHHHHHHHhcCCCc
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYTITDVEELGDWMRSCLENHPMF  206 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~~td~~~~~~~~~~~~~~~~~~  206 (252)
                      +|.|++..|.||             ..+-.++.+||.+| +|+--|.+-+..+...+.+.+.++-
T Consensus       178 aDaVFLDlPaPw-------------~AiPha~~~lk~~g~r~csFSPCIEQvqrtce~l~~~gf~  229 (314)
T KOG2915|consen  178 ADAVFLDLPAPW-------------EAIPHAAKILKDEGGRLCSFSPCIEQVQRTCEALRSLGFI  229 (314)
T ss_pred             cceEEEcCCChh-------------hhhhhhHHHhhhcCceEEeccHHHHHHHHHHHHHHhCCCc
Confidence            999999999999             36666777899766 7777788889999999998887643

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.83  E-value=3e-08  Score=92.59  Aligned_cols=128  Identities=12%  Similarity=0.109  Sum_probs=93.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...|||++||.|.=+..+|.... ...++++|+++..+...++++..+      ++.|+.+...|+.. +...+ ++.|
T Consensus       113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~------G~~nv~v~~~D~~~-~~~~~-~~~f  184 (470)
T PRK11933        113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRC------GVSNVALTHFDGRV-FGAAL-PETF  184 (470)
T ss_pred             CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCchhh-hhhhc-hhhc
Confidence            356899999999999999999864 458999999999999998888765      88999999999874 43333 4579


Q ss_pred             cEEEEeCCCC----cccccccccc----------ccCHHHHHHHHHhhcCCcEEEEEe--CchHHHHHHHHHH
Q 025470          144 TKMFFLFPDP----HFKEKNHRRR----------VISPHLLDEYAYVLGVGGIIYTIT--DVEELGDWMRSCL  200 (252)
Q Consensus       144 d~i~~~fpdP----~~k~~h~krr----------~~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~~~~~  200 (252)
                      |.|.+.-|..    +.+....+.+          -.|..+|..+.+.|||||+|+.+|  -+.+--+...+.+
T Consensus       185 D~ILvDaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~  257 (470)
T PRK11933        185 DAILLDAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWL  257 (470)
T ss_pred             CeEEEcCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHH
Confidence            9999987744    1111111111          145789999999999999998876  3344444444443

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=98.83  E-value=5.6e-08  Score=85.05  Aligned_cols=117  Identities=15%  Similarity=0.231  Sum_probs=96.2

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCcccEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      .||-||-|.|..+..+.+..+..+++.|||++..++.|++-+...   .... -+++.++..|+.+.+.+.  ...+|.|
T Consensus        79 ~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~---~~~~~dpRv~i~i~Dg~~~v~~~--~~~fDvI  153 (282)
T COG0421          79 RVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEP---SGGADDPRVEIIIDDGVEFLRDC--EEKFDVI  153 (282)
T ss_pred             eEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCc---ccccCCCceEEEeccHHHHHHhC--CCcCCEE
Confidence            899999999999999999988889999999999999998876543   1112 478999999998877643  3389999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG  193 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~  193 (252)
                      ++.-.||-    ..-..+.+..|++.+.+.|+++|.++..+.+..+.
T Consensus       154 i~D~tdp~----gp~~~Lft~eFy~~~~~~L~~~Gi~v~q~~~~~~~  196 (282)
T COG0421         154 IVDSTDPV----GPAEALFTEEFYEGCRRALKEDGIFVAQAGSPFLQ  196 (282)
T ss_pred             EEcCCCCC----CcccccCCHHHHHHHHHhcCCCcEEEEecCCcccc
Confidence            99988882    23356778899999999999999999996654433

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.82  E-value=5.4e-08  Score=84.09  Aligned_cols=104  Identities=15%  Similarity=0.226  Sum_probs=69.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc-
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT-  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d-  144 (252)
                      ...|||||||+|.++..++++.+  .++|+|+++.+++.+++++.        ..+|+.++++|+.. ++  ++  ++| 
T Consensus        30 ~~~VLEiG~G~G~lt~~L~~~~~--~v~~iE~d~~~~~~l~~~~~--------~~~~v~v~~~D~~~-~~--~~--~~d~   94 (253)
T TIGR00755        30 GDVVLEIGPGLGALTEPLLKRAK--KVTAIEIDPRLAEILRKLLS--------LYERLEVIEGDALK-VD--LP--DFPK   94 (253)
T ss_pred             cCEEEEeCCCCCHHHHHHHHhCC--cEEEEECCHHHHHHHHHHhC--------cCCcEEEEECchhc-CC--hh--HcCC
Confidence            45899999999999999999975  59999999999988776541        24689999999864 33  21  344 


Q ss_pred             --EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025470          145 --KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR  197 (252)
Q Consensus       145 --~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~  197 (252)
                        .|+.|.|-.+           ...++..+..  .+|+...+.+-..++++.+.
T Consensus        95 ~~~vvsNlPy~i-----------~~~il~~ll~--~~~~~~~~~~~q~e~a~Rl~  136 (253)
T TIGR00755        95 QLKVVSNLPYNI-----------SSPLIFKLLE--KPKFRLAVLMVQKEVAERLT  136 (253)
T ss_pred             cceEEEcCChhh-----------HHHHHHHHhc--cCCCceEEEEehHHHHHHHc
Confidence              7777766322           2234444433  55554444443445444443

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.79  E-value=2.8e-08  Score=87.71  Aligned_cols=75  Identities=20%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||.|.++..+++.  ...++|+|+++.+++.+++++...     ...+|+.++++|+.+ .+  +  ..+|.
T Consensus        37 ~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~~-----~~~~~v~ii~~Dal~-~~--~--~~~d~  104 (294)
T PTZ00338         37 TDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQNS-----PLASKLEVIEGDALK-TE--F--PYFDV  104 (294)
T ss_pred             cCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHhc-----CCCCcEEEEECCHhh-hc--c--cccCE
Confidence            458999999999999999998  457999999999999998876542     125789999999864 32  2  35789


Q ss_pred             EEEeCCC
Q 025470          146 MFFLFPD  152 (252)
Q Consensus       146 i~~~fpd  152 (252)
                      |+.|.|=
T Consensus       105 VvaNlPY  111 (294)
T PTZ00338        105 CVANVPY  111 (294)
T ss_pred             EEecCCc
Confidence            9888763

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.79  E-value=1.7e-08  Score=81.24  Aligned_cols=81  Identities=12%  Similarity=0.224  Sum_probs=60.4

Q ss_pred             EEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHH
Q 025470           93 IGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDE  172 (252)
Q Consensus        93 iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~  172 (252)
                      +|+|+|+.|++.|+++....   ......|+.++++|+. .++  ++++++|.|++.+.-.+...        ...++++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~---~~~~~~~i~~~~~d~~-~lp--~~~~~fD~v~~~~~l~~~~d--------~~~~l~e   66 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLK---ARSCYKCIEWIEGDAI-DLP--FDDCEFDAVTMGYGLRNVVD--------RLRAMKE   66 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcc---cccCCCceEEEEechh-hCC--CCCCCeeEEEecchhhcCCC--------HHHHHHH
Confidence            49999999999987654321   1123468999999987 465  67889999998765443321        1369999


Q ss_pred             HHHhhcCCcEEEEEe
Q 025470          173 YAYVLGVGGIIYTIT  187 (252)
Q Consensus       173 ~~~~LkpgG~l~~~t  187 (252)
                      ++++|||||.|++..
T Consensus        67 i~rvLkpGG~l~i~d   81 (160)
T PLN02232         67 MYRVLKPGSRVSILD   81 (160)
T ss_pred             HHHHcCcCeEEEEEE
Confidence            999999999998753

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.78  E-value=3.4e-08  Score=85.61  Aligned_cols=72  Identities=18%  Similarity=0.355  Sum_probs=58.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  ...++|+|+++.+++.+++++.        ..+|+.++++|+.+ ++  ++  .+|.
T Consensus        30 ~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~--------~~~~v~ii~~D~~~-~~--~~--~~d~   94 (258)
T PRK14896         30 GDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEI--------AAGNVEIIEGDALK-VD--LP--EFNK   94 (258)
T ss_pred             cCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhc--------cCCCEEEEEecccc-CC--ch--hceE
Confidence            458999999999999999999  4589999999999998876542        24689999999864 33  22  4689


Q ss_pred             EEEeCCC
Q 025470          146 MFFLFPD  152 (252)
Q Consensus       146 i~~~fpd  152 (252)
                      |+.|.|-
T Consensus        95 Vv~NlPy  101 (258)
T PRK14896         95 VVSNLPY  101 (258)
T ss_pred             EEEcCCc
Confidence            9888763

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.77  E-value=3e-08  Score=86.67  Aligned_cols=72  Identities=18%  Similarity=0.311  Sum_probs=56.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.++..++++.+  .++|+|+++.|++.+++++.        . +|+.++++|+.+ ++  +++-..+.
T Consensus        43 ~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~--------~-~~v~~i~~D~~~-~~--~~~~~~~~  108 (272)
T PRK00274         43 GDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFA--------E-DNLTIIEGDALK-VD--LSELQPLK  108 (272)
T ss_pred             cCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhc--------c-CceEEEEChhhc-CC--HHHcCcce
Confidence            45899999999999999999964  89999999999998876431        2 689999999874 33  22211477


Q ss_pred             EEEeCC
Q 025470          146 MFFLFP  151 (252)
Q Consensus       146 i~~~fp  151 (252)
                      |+.|.|
T Consensus       109 vv~NlP  114 (272)
T PRK00274        109 VVANLP  114 (272)
T ss_pred             EEEeCC
Confidence            888865

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.73  E-value=1e-07  Score=78.53  Aligned_cols=98  Identities=21%  Similarity=0.212  Sum_probs=79.6

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .++|||+|.|-=++.+|-.+|+..++.+|.+...+...+.-+..+      +++|+.++++.+.+    ......+|.|.
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~----~~~~~~fd~v~  120 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVREL------GLSNVEVINGRAEE----PEYRESFDVVT  120 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHH------T-SSEEEEES-HHH----TTTTT-EEEEE
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHh------CCCCEEEEEeeecc----cccCCCccEEE
Confidence            799999999999999999999999999999999888888777776      89999999999975    23467899998


Q ss_pred             EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .-=-.|..            .+++.+...|++||.+++.-
T Consensus       121 aRAv~~l~------------~l~~~~~~~l~~~G~~l~~K  148 (184)
T PF02527_consen  121 ARAVAPLD------------KLLELARPLLKPGGRLLAYK  148 (184)
T ss_dssp             EESSSSHH------------HHHHHHGGGEEEEEEEEEEE
T ss_pred             eehhcCHH------------HHHHHHHHhcCCCCEEEEEc
Confidence            74333432            58999999999999888765

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.73  E-value=4.7e-08  Score=83.70  Aligned_cols=95  Identities=21%  Similarity=0.281  Sum_probs=70.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||+|.|.++..+++++|+.+++.+|+ +..++.+.+            .++|.++.+|..+    .+|.  .|.+
T Consensus       102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------------~~rv~~~~gd~f~----~~P~--~D~~  162 (241)
T PF00891_consen  102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------------ADRVEFVPGDFFD----PLPV--ADVY  162 (241)
T ss_dssp             SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------------TTTEEEEES-TTT----CCSS--ESEE
T ss_pred             cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------------ccccccccccHHh----hhcc--ccce
Confidence            4799999999999999999999999999998 766665543            4589999999742    3444  8888


Q ss_pred             EEeC-CCCccccccccccccCHHHHHHHHHhhcCC--cEEEEEe
Q 025470          147 FFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVG--GIIYTIT  187 (252)
Q Consensus       147 ~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~Lkpg--G~l~~~t  187 (252)
                      ++.. --.|....       ...+|+.+++.|+||  |+|+|.-
T Consensus       163 ~l~~vLh~~~d~~-------~~~iL~~~~~al~pg~~g~llI~e  199 (241)
T PF00891_consen  163 LLRHVLHDWSDED-------CVKILRNAAAALKPGKDGRLLIIE  199 (241)
T ss_dssp             EEESSGGGS-HHH-------HHHHHHHHHHHSEECTTEEEEEEE
T ss_pred             eeehhhhhcchHH-------HHHHHHHHHHHhCCCCCCeEEEEe
Confidence            8743 22333211       236999999999999  9998853

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.73  E-value=2.1e-08  Score=84.76  Aligned_cols=110  Identities=17%  Similarity=0.129  Sum_probs=72.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------CCCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------NPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      ...||..|||.|.-+..||.+  +..|+|+|+|+.+++.+.+........      ......+|.++++|... ++. -.
T Consensus        38 ~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~-l~~-~~  113 (218)
T PF05724_consen   38 GGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFE-LPP-ED  113 (218)
T ss_dssp             SEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTT-GGG-SC
T ss_pred             CCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEccccc-CCh-hh
Confidence            568999999999999999998  789999999999998774321110000      00123468999999863 431 11


Q ss_pred             CCcccEEEEe--CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFL--FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~--fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+.||.|+=.  |..=.+..        ...+.+.+.++|+|||.+.+.|
T Consensus       114 ~g~fD~iyDr~~l~Alpp~~--------R~~Ya~~l~~ll~p~g~~lLi~  155 (218)
T PF05724_consen  114 VGKFDLIYDRTFLCALPPEM--------RERYAQQLASLLKPGGRGLLIT  155 (218)
T ss_dssp             HHSEEEEEECSSTTTS-GGG--------HHHHHHHHHHCEEEEEEEEEEE
T ss_pred             cCCceEEEEecccccCCHHH--------HHHHHHHHHHHhCCCCcEEEEE
Confidence            2568999832  21111111        2369999999999999955544

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.70  E-value=1.3e-07  Score=86.11  Aligned_cols=120  Identities=12%  Similarity=0.058  Sum_probs=88.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC-Cccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK-GQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~-~s~d  144 (252)
                      +..||++-|=+|.+++..|... ...+++||+|..++++|++|+...    ......+.|+++|+.+.|...-.. ..+|
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~gG-A~~vt~VD~S~~al~~a~~N~~LN----g~~~~~~~~i~~Dvf~~l~~~~~~g~~fD  292 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALGG-ASEVTSVDLSKRALEWARENAELN----GLDGDRHRFIVGDVFKWLRKAERRGEKFD  292 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhcC-CCceEEEeccHHHHHHHHHHHHhc----CCCccceeeehhhHHHHHHHHHhcCCccc
Confidence            5579999999999999999983 228999999999999999998653    112345899999998777544333 3899


Q ss_pred             EEEEeCCCCccccccccccc--cCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          145 KMFFLFPDPHFKEKNHRRRV--ISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~--~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      .|++..|.=--.++.. .+.  -...++..+.++|+|||.++++|....
T Consensus       293 lIilDPPsF~r~k~~~-~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~  340 (393)
T COG1092         293 LIILDPPSFARSKKQE-FSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH  340 (393)
T ss_pred             EEEECCcccccCcccc-hhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence            9999765322111111 111  134688899999999999999987543

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=98.64  E-value=3.9e-07  Score=82.54  Aligned_cols=138  Identities=20%  Similarity=0.323  Sum_probs=97.6

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCC--CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC-
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPE--VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG-  141 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~--~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~-  141 (252)
                      ++.+|||+.++.|.=+.++|+..++  ..|+++|+++..+....+++..+      |..|+.+++.|+.. +......+ 
T Consensus       156 pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~Rl------G~~nv~~~~~d~~~-~~~~~~~~~  228 (355)
T COG0144         156 PGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRL------GVRNVIVVNKDARR-LAELLPGGE  228 (355)
T ss_pred             CcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHc------CCCceEEEeccccc-ccccccccC
Confidence            3569999999999999999999654  56799999999999999888776      89999999999863 44333343 


Q ss_pred             cccEEEEeCC---------CCcccccccc-----ccccCHHHHHHHHHhhcCCcEEEEEe--CchHHHHHHHHHH-hcCC
Q 025470          142 QLTKMFFLFP---------DPHFKEKNHR-----RRVISPHLLDEYAYVLGVGGIIYTIT--DVEELGDWMRSCL-ENHP  204 (252)
Q Consensus       142 s~d~i~~~fp---------dP~~k~~h~k-----rr~~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~~~~~-~~~~  204 (252)
                      .+|.|.+.-|         +|-.+.+...     ---+|..+|....++|||||.|+.+|  -..+-.+...+.+ ..++
T Consensus       229 ~fD~iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~  308 (355)
T COG0144         229 KFDRILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHP  308 (355)
T ss_pred             cCcEEEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCC
Confidence            4999998755         2222111111     11256789999999999999999876  3334444444333 3444


Q ss_pred             Ccccc
Q 025470          205 MFEAL  209 (252)
Q Consensus       205 ~~~~~  209 (252)
                      .|+..
T Consensus       309 ~~~~~  313 (355)
T COG0144         309 DFELE  313 (355)
T ss_pred             Cceee
Confidence            44333

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=98.62  E-value=4.9e-08  Score=81.89  Aligned_cols=133  Identities=15%  Similarity=0.121  Sum_probs=96.1

Q ss_pred             cCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC
Q 025470           61 VNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK  140 (252)
Q Consensus        61 ~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~  140 (252)
                      ++.++..+|||.+.|-|.+++..+++. ...|+-||.++..++.|.-|--..    .-.-.+++++.+|+.+.+. .|++
T Consensus       130 V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr----~l~~~~i~iilGD~~e~V~-~~~D  203 (287)
T COG2521         130 VKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSR----ELFEIAIKIILGDAYEVVK-DFDD  203 (287)
T ss_pred             eccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCc----cccccccEEecccHHHHHh-cCCc
Confidence            334457799999999999999999993 238999999999988775432110    0012268999999997665 4889


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch-------HHHHHHHHHHhcCC
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE-------ELGDWMRSCLENHP  204 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~-------~~~~~~~~~~~~~~  204 (252)
                      .+||.|+-..|  -  -.++. .+-+..|-++++|+|||||.++--+-++       ++...+.+.+...+
T Consensus       204 ~sfDaIiHDPP--R--fS~Ag-eLYseefY~El~RiLkrgGrlFHYvG~Pg~ryrG~d~~~gVa~RLr~vG  269 (287)
T COG2521         204 ESFDAIIHDPP--R--FSLAG-ELYSEEFYRELYRILKRGGRLFHYVGNPGKRYRGLDLPKGVAERLRRVG  269 (287)
T ss_pred             cccceEeeCCC--c--cchhh-hHhHHHHHHHHHHHcCcCCcEEEEeCCCCcccccCChhHHHHHHHHhcC
Confidence            99999875332  1  22333 6778899999999999999998766542       45566666666554

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.60  E-value=3.9e-07  Score=82.92  Aligned_cols=106  Identities=17%  Similarity=0.186  Sum_probs=84.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||+.||+|..++.++...+ ...++++|+++.+++.+++|+...      +..|+.+++.|+...+...  ...+|.
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N------~~~~~~v~~~Da~~~l~~~--~~~fDv  117 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYN------SVENIEVPNEDAANVLRYR--NRKFHV  117 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEchhHHHHHHHh--CCCCCE
Confidence            4799999999999999999854 358999999999999999988654      5678999999998655421  356898


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCchHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDVEEL  192 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~~~~  192 (252)
                      |++   ||. ..        ...|+..+.+.+++||.|+++ ||...+
T Consensus       118 Idl---DPf-Gs--------~~~fld~al~~~~~~glL~vTaTD~~~L  153 (374)
T TIGR00308       118 IDI---DPF-GT--------PAPFVDSAIQASAERGLLLVTATDTSAL  153 (374)
T ss_pred             EEe---CCC-CC--------cHHHHHHHHHhcccCCEEEEEecccHHh
Confidence            887   553 11        126999999999999999886 675543

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.59  E-value=2.2e-07  Score=74.82  Aligned_cols=78  Identities=18%  Similarity=0.307  Sum_probs=55.9

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCc-ccE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQ-LTK  145 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s-~d~  145 (252)
                      +|||+.||.|.-++++|+.+  ..|++||+++..++.|+.|+.-.      | .+||.++++|+.+.+.. +.... +|.
T Consensus         2 ~vlD~fcG~GGNtIqFA~~~--~~Viaidid~~~~~~a~hNa~vY------Gv~~~I~~i~gD~~~~~~~-~~~~~~~D~   72 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFARTF--DRVIAIDIDPERLECAKHNAEVY------GVADNIDFICGDFFELLKR-LKSNKIFDV   72 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHT------T-GGGEEEEES-HHHHGGG-B------SE
T ss_pred             EEEEeccCcCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEeCCHHHHHhh-ccccccccE
Confidence            69999999999999999995  47999999999999999998654      4 56999999999875543 33233 688


Q ss_pred             EEEeCCCCccc
Q 025470          146 MFFLFPDPHFK  156 (252)
Q Consensus       146 i~~~fpdP~~k  156 (252)
                      |++.  .||-.
T Consensus        73 vFlS--PPWGG   81 (163)
T PF09445_consen   73 VFLS--PPWGG   81 (163)
T ss_dssp             EEE-----BSS
T ss_pred             EEEC--CCCCC
Confidence            8765  45643

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.59  E-value=1.2e-08  Score=85.24  Aligned_cols=99  Identities=16%  Similarity=0.279  Sum_probs=66.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..+||+|||+|..+..|-.+  ...++|||||.+|++.|.++         ..++  .+.++|+..+++ ...+..+|.|
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~--a~~ltGvDiS~nMl~kA~eK---------g~YD--~L~~Aea~~Fl~-~~~~er~DLi  192 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDM--ADRLTGVDISENMLAKAHEK---------GLYD--TLYVAEAVLFLE-DLTQERFDLI  192 (287)
T ss_pred             ceeeecccCcCcccHhHHHH--HhhccCCchhHHHHHHHHhc---------cchH--HHHHHHHHHHhh-hccCCcccch
Confidence            48999999999999888877  44689999999999988764         1222  233455543332 2335567776


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...=--|+...        -..++..++..|+|||.|.|++
T Consensus       193 ~AaDVl~YlG~--------Le~~~~~aa~~L~~gGlfaFSv  225 (287)
T COG4976         193 VAADVLPYLGA--------LEGLFAGAAGLLAPGGLFAFSV  225 (287)
T ss_pred             hhhhHHHhhcc--------hhhHHHHHHHhcCCCceEEEEe
Confidence            53211111110        1258888999999999999976

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.57  E-value=5.2e-07  Score=80.63  Aligned_cols=103  Identities=18%  Similarity=0.257  Sum_probs=85.3

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~  143 (252)
                      .+.+|||.=+|.|.|++.+|...... ++++|+++.+++..++|+...      +..+ +..+++|+.+..+..   +.+
T Consensus       188 ~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~LN------~v~~~v~~i~gD~rev~~~~---~~a  257 (341)
T COG2520         188 EGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIRLN------KVEGRVEPILGDAREVAPEL---GVA  257 (341)
T ss_pred             CCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHHhc------CccceeeEEeccHHHhhhcc---ccC
Confidence            36799999999999999999996444 999999999999999998664      5555 999999998654422   789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |.|+++.|.--            ..|+....+.|++||.+++-+-.
T Consensus       258 DrIim~~p~~a------------~~fl~~A~~~~k~~g~iHyy~~~  291 (341)
T COG2520         258 DRIIMGLPKSA------------HEFLPLALELLKDGGIIHYYEFV  291 (341)
T ss_pred             CEEEeCCCCcc------------hhhHHHHHHHhhcCcEEEEEecc
Confidence            99999987532            24999999999999999986643

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.57  E-value=2.8e-07  Score=81.67  Aligned_cols=103  Identities=16%  Similarity=0.208  Sum_probs=71.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ..+|||+|||+|.+++.-|+.. ...|+|||-|.-+ +.|.+.+..      +++.+ |.++++.+.+ +  .+|...+|
T Consensus        61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~------N~~~~ii~vi~gkvEd-i--~LP~eKVD  129 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKD------NGLEDVITVIKGKVED-I--ELPVEKVD  129 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHh------cCccceEEEeecceEE-E--ecCcccee
Confidence            4599999999999999999997 5689999988765 677776654      46666 8999999875 4  36667888


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      .|+.-+---|-   -...+  -..+|-.--+.|+|||.++
T Consensus       130 iIvSEWMGy~L---l~EsM--ldsVl~ARdkwL~~~G~i~  164 (346)
T KOG1499|consen  130 IIVSEWMGYFL---LYESM--LDSVLYARDKWLKEGGLIY  164 (346)
T ss_pred             EEeehhhhHHH---HHhhh--hhhhhhhhhhccCCCceEc
Confidence            88743211110   00000  1124444458899999874

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.56  E-value=7.4e-07  Score=80.69  Aligned_cols=112  Identities=14%  Similarity=0.276  Sum_probs=75.7

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc----------
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY----------  137 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~----------  137 (252)
                      .+||+-||.|.+++.||..  ...|+|||+++.+++.|+.++..      +++.|+.|+.+++.+.....          
T Consensus       199 ~vlDlycG~G~fsl~la~~--~~~V~gvE~~~~av~~A~~Na~~------N~i~n~~f~~~~~~~~~~~~~~~r~~~~~~  270 (352)
T PF05958_consen  199 DVLDLYCGVGTFSLPLAKK--AKKVIGVEIVEEAVEDARENAKL------NGIDNVEFIRGDAEDFAKALAKAREFNRLK  270 (352)
T ss_dssp             EEEEES-TTTCCHHHHHCC--SSEEEEEES-HHHHHHHHHHHHH------TT--SEEEEE--SHHCCCHHCCS-GGTTGG
T ss_pred             cEEEEeecCCHHHHHHHhh--CCeEEEeeCCHHHHHHHHHHHHH------cCCCcceEEEeeccchhHHHHhhHHHHhhh
Confidence            6999999999999999999  45899999999999999998866      48999999999876432110          


Q ss_pred             ---CCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          138 ---FEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       138 ---~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                         +....+|.|++..|   .+-       ....+++.+.   ++.=.+|+++|...++..+....
T Consensus       271 ~~~~~~~~~d~vilDPP---R~G-------~~~~~~~~~~---~~~~ivYvSCnP~tlaRDl~~L~  323 (352)
T PF05958_consen  271 GIDLKSFKFDAVILDPP---RAG-------LDEKVIELIK---KLKRIVYVSCNPATLARDLKILK  323 (352)
T ss_dssp             GS-GGCTTESEEEE------TT--------SCHHHHHHHH---HSSEEEEEES-HHHHHHHHHHHH
T ss_pred             hhhhhhcCCCEEEEcCC---CCC-------chHHHHHHHh---cCCeEEEEECCHHHHHHHHHHHh
Confidence               11235788877543   221       2234666554   34679999999999988887643

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.55  E-value=2.4e-07  Score=75.54  Aligned_cols=111  Identities=15%  Similarity=0.157  Sum_probs=68.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc-CccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI-PNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l-~~~~~~~s~d  144 (252)
                      ...|||+|||+|..++.+|...+...++..|..+ .+...+.++.....   ....++.+...|..+.+ ...+....+|
T Consensus        46 ~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~---~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   46 GKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGS---LLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT-----------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             CceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccc---cccccccCcEEEecCcccccccccccCC
Confidence            4589999999999999999997778999999998 88888887754310   12456888887764322 2234456899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|+..  |=.+...      ..+.+++.+.++|+++|.+++...
T Consensus       122 ~Ilas--Dv~Y~~~------~~~~L~~tl~~ll~~~~~vl~~~~  157 (173)
T PF10294_consen  122 VILAS--DVLYDEE------LFEPLVRTLKRLLKPNGKVLLAYK  157 (173)
T ss_dssp             EEEEE--S--S-GG------GHHHHHHHHHHHBTT-TTEEEEEE
T ss_pred             EEEEe--cccchHH------HHHHHHHHHHHHhCCCCEEEEEeC
Confidence            98742  1111111      234799999999999999887664

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.54  E-value=4.1e-07  Score=79.77  Aligned_cols=118  Identities=14%  Similarity=0.162  Sum_probs=81.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+-|=+|.+++..|... ...+++||.|..++++|++|+...    .-...+++|+..|+.+.+...-..+.+|.
T Consensus       124 gkrvLnlFsYTGgfsv~Aa~gG-A~~v~~VD~S~~al~~a~~N~~lN----g~~~~~~~~~~~Dvf~~l~~~~~~~~fD~  198 (286)
T PF10672_consen  124 GKRVLNLFSYTGGFSVAAAAGG-AKEVVSVDSSKRALEWAKENAALN----GLDLDRHRFIQGDVFKFLKRLKKGGRFDL  198 (286)
T ss_dssp             TCEEEEET-TTTHHHHHHHHTT-ESEEEEEES-HHHHHHHHHHHHHT----T-CCTCEEEEES-HHHHHHHHHHTT-EEE
T ss_pred             CCceEEecCCCCHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc----CCCccceEEEecCHHHHHHHHhcCCCCCE
Confidence            4599999999999999877653 447999999999999999998653    11245899999999876653223578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |++..|. ..|.+..-.+ -...++..+.++|+|||.|+++|...
T Consensus       199 IIlDPPs-F~k~~~~~~~-~y~~L~~~a~~ll~~gG~l~~~scs~  241 (286)
T PF10672_consen  199 IILDPPS-FAKSKFDLER-DYKKLLRRAMKLLKPGGLLLTCSCSH  241 (286)
T ss_dssp             EEE--SS-EESSTCEHHH-HHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred             EEECCCC-CCCCHHHHHH-HHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence            9998663 2222211111 23468888999999999999988763

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.54  E-value=1.2e-06  Score=86.22  Aligned_cols=120  Identities=16%  Similarity=0.097  Sum_probs=80.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHC------------------------------------------CCCeEEEEecCHhHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLF------------------------------------------PEVLMIGMELRDKVTE  103 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~------------------------------------------p~~~~iGiDis~~~i~  103 (252)
                      ...++|.+||+|+++++.|...                                          ....++|+|+++.+++
T Consensus       191 ~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av~  270 (702)
T PRK11783        191 GTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVIQ  270 (702)
T ss_pred             CCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHHH
Confidence            3589999999999999988741                                          1236899999999999


Q ss_pred             HHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhh---cC
Q 025470          104 YVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL---GV  179 (252)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L---kp  179 (252)
                      .|+.|+...      ++. .+.+.++|+.+ +......+++|.|+.|.|  +-++-..+.  ....+...+...|   .+
T Consensus       271 ~A~~N~~~~------g~~~~i~~~~~D~~~-~~~~~~~~~~d~IvtNPP--Yg~r~~~~~--~l~~lY~~lg~~lk~~~~  339 (702)
T PRK11783        271 AARKNARRA------GVAELITFEVKDVAD-LKNPLPKGPTGLVISNPP--YGERLGEEP--ALIALYSQLGRRLKQQFG  339 (702)
T ss_pred             HHHHHHHHc------CCCcceEEEeCChhh-cccccccCCCCEEEECCC--CcCccCchH--HHHHHHHHHHHHHHHhCC
Confidence            999998764      554 48999999874 432233457999998854  322110000  0112333333333   49


Q ss_pred             CcEEEEEeCchHHHHHH
Q 025470          180 GGIIYTITDVEELGDWM  196 (252)
Q Consensus       180 gG~l~~~td~~~~~~~~  196 (252)
                      |+.+++.|.+..+...+
T Consensus       340 g~~~~llt~~~~l~~~~  356 (702)
T PRK11783        340 GWNAALFSSSPELLSCL  356 (702)
T ss_pred             CCeEEEEeCCHHHHHHh
Confidence            99999999887765544

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.50  E-value=5.6e-07  Score=74.13  Aligned_cols=110  Identities=17%  Similarity=0.234  Sum_probs=78.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccC-CCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYF-EKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~-~~~s~  143 (252)
                      +..|||+-||+|.++++.+.+. ...++.||.++.++...++|+...      +.. ++.++..|+...+.... ....+
T Consensus        43 g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l------~~~~~~~v~~~d~~~~l~~~~~~~~~f  115 (183)
T PF03602_consen   43 GARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKL------GLEDKIRVIKGDAFKFLLKLAKKGEKF  115 (183)
T ss_dssp             T-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHH------T-GGGEEEEESSHHHHHHHHHHCTS-E
T ss_pred             CCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHh------CCCcceeeeccCHHHHHHhhcccCCCc
Confidence            5689999999999999988885 458999999999999999999887      444 59999999876554321 35789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHH--HhhcCCcEEEEEeCch
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYA--YVLGVGGIIYTITDVE  190 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~--~~LkpgG~l~~~td~~  190 (252)
                      |.|++..|   +.....     ...+++.+.  .+|+++|.+++.++..
T Consensus       116 DiIflDPP---Y~~~~~-----~~~~l~~l~~~~~l~~~~~ii~E~~~~  156 (183)
T PF03602_consen  116 DIIFLDPP---YAKGLY-----YEELLELLAENNLLNEDGLIIIEHSKK  156 (183)
T ss_dssp             EEEEE--S---TTSCHH-----HHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred             eEEEECCC---cccchH-----HHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence            99988543   322210     135777776  7899999999988653

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.49  E-value=4e-07  Score=80.20  Aligned_cols=76  Identities=14%  Similarity=0.256  Sum_probs=60.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC--c
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG--Q  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~--s  142 (252)
                      +.++||.+||.|.++..+++..+ +..|+|+|+++.+++.|++++.      .  ..++.++++|..+ +...++++  +
T Consensus        20 g~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~------~--~~ri~~i~~~f~~-l~~~l~~~~~~   90 (296)
T PRK00050         20 DGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK------P--FGRFTLVHGNFSN-LKEVLAEGLGK   90 (296)
T ss_pred             CCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc------c--CCcEEEEeCCHHH-HHHHHHcCCCc
Confidence            45899999999999999999986 6899999999999999886542      1  4689999999875 33334332  7


Q ss_pred             ccEEEEeC
Q 025470          143 LTKMFFLF  150 (252)
Q Consensus       143 ~d~i~~~f  150 (252)
                      +|.|++.+
T Consensus        91 vDgIl~DL   98 (296)
T PRK00050         91 VDGILLDL   98 (296)
T ss_pred             cCEEEECC
Confidence            99998653

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=5.4e-07  Score=83.33  Aligned_cols=118  Identities=14%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC--Ccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK--GQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~--~s~  143 (252)
                      ...+||+.||+|.+++++|+.  -..|+|||+++.+++.|..++..      +++.|..|+++-|.+.++..+..  ++=
T Consensus       384 ~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~------NgisNa~Fi~gqaE~~~~sl~~~~~~~~  455 (534)
T KOG2187|consen  384 DKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQI------NGISNATFIVGQAEDLFPSLLTPCCDSE  455 (534)
T ss_pred             CcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchh------cCccceeeeecchhhccchhcccCCCCC
Confidence            468999999999999999998  55799999999999999887644      69999999999877666544433  122


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      +.+.+.  ||..+--|.       .+++.+...=.+--.+|++......+..+.+..
T Consensus       456 ~~v~ii--DPpR~Glh~-------~~ik~l~~~~~~~rlvyvSCn~~t~ar~v~~lc  503 (534)
T KOG2187|consen  456 TLVAII--DPPRKGLHM-------KVIKALRAYKNPRRLVYVSCNPHTAARNVIDLC  503 (534)
T ss_pred             ceEEEE--CCCcccccH-------HHHHHHHhccCccceEEEEcCHHHhhhhHHHhh
Confidence            322222  555444343       578777777668888888887655545444444

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=9e-07  Score=73.24  Aligned_cols=105  Identities=21%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhh----cCCCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRV----SNPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~----~~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      .-.+||||+|+|.++..+|..  .++.+.+|||.-++.++.+.+++...-.    .....-.++.++.+|-.. .  +-.
T Consensus        83 G~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~-g--~~e  159 (237)
T KOG1661|consen   83 GASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRK-G--YAE  159 (237)
T ss_pred             CcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCccc-c--CCc
Confidence            458999999999999999976  3455669999999999999998876421    111234578999999764 2  234


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+|.|++--.++              ...+++...|++||.+++--
T Consensus       160 ~a~YDaIhvGAaa~--------------~~pq~l~dqL~~gGrllip~  193 (237)
T KOG1661|consen  160 QAPYDAIHVGAAAS--------------ELPQELLDQLKPGGRLLIPV  193 (237)
T ss_pred             cCCcceEEEccCcc--------------ccHHHHHHhhccCCeEEEee
Confidence            67899999874333              37788899999999998854

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.46  E-value=3.3e-06  Score=69.22  Aligned_cols=111  Identities=18%  Similarity=0.156  Sum_probs=81.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.++||+=+|+|.++++.+.+.. ..++.||.+..++...++|++.+     .-..++.++..|+...|...-..+.||.
T Consensus        44 g~~~LDlFAGSGaLGlEAlSRGA-~~~~~vE~~~~a~~~l~~N~~~l-----~~~~~~~~~~~da~~~L~~~~~~~~FDl  117 (187)
T COG0742          44 GARVLDLFAGSGALGLEALSRGA-ARVVFVEKDRKAVKILKENLKAL-----GLEGEARVLRNDALRALKQLGTREPFDL  117 (187)
T ss_pred             CCEEEEecCCccHhHHHHHhCCC-ceEEEEecCHHHHHHHHHHHHHh-----CCccceEEEeecHHHHHHhcCCCCcccE
Confidence            56999999999999999999963 47899999999999999998776     2246899999999865543322335999


Q ss_pred             EEEeCCCCccccccccccccC-HHHHHH--HHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVIS-PHLLDE--YAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~-~~~l~~--~~~~LkpgG~l~~~td~~  190 (252)
                      ||+..|-.+   ..     +. ...+..  -..+|+|+|.+++.++..
T Consensus       118 VflDPPy~~---~l-----~~~~~~~~~~~~~~~L~~~~~iv~E~~~~  157 (187)
T COG0742         118 VFLDPPYAK---GL-----LDKELALLLLEENGWLKPGALIVVEHDKD  157 (187)
T ss_pred             EEeCCCCcc---ch-----hhHHHHHHHHHhcCCcCCCcEEEEEeCCC
Confidence            998544331   11     11 111112  236799999999988764

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.41  E-value=1.6e-06  Score=74.77  Aligned_cols=73  Identities=26%  Similarity=0.423  Sum_probs=57.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC-ccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG-QLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~-s~d  144 (252)
                      ...|||||+|.|.++..|+++  ...+++||+++.++...++..        ...+|+.++.+|+.. ++  ++.- ...
T Consensus        31 ~d~VlEIGpG~GaLT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~--------~~~~n~~vi~~DaLk-~d--~~~l~~~~   97 (259)
T COG0030          31 GDNVLEIGPGLGALTEPLLER--AARVTAIEIDRRLAEVLKERF--------APYDNLTVINGDALK-FD--FPSLAQPY   97 (259)
T ss_pred             CCeEEEECCCCCHHHHHHHhh--cCeEEEEEeCHHHHHHHHHhc--------ccccceEEEeCchhc-Cc--chhhcCCC
Confidence            458999999999999999999  457999999999987766543        246799999999873 33  3321 567


Q ss_pred             EEEEeCC
Q 025470          145 KMFFLFP  151 (252)
Q Consensus       145 ~i~~~fp  151 (252)
                      .|+.|.|
T Consensus        98 ~vVaNlP  104 (259)
T COG0030          98 KVVANLP  104 (259)
T ss_pred             EEEEcCC
Confidence            8888875

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.39  E-value=2e-06  Score=76.29  Aligned_cols=120  Identities=18%  Similarity=0.223  Sum_probs=75.9

Q ss_pred             CceEEEEcCcccHHHHHHHHH-------CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-------FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-------~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~  138 (252)
                      ...|+|.+||+|.+++++.+.       .+..+++|+|+++.++..|.-++...    .....+..+..+|...  ....
T Consensus        47 ~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~----~~~~~~~~i~~~d~l~--~~~~  120 (311)
T PF02384_consen   47 GDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLH----GIDNSNINIIQGDSLE--NDKF  120 (311)
T ss_dssp             TEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHT----THHCBGCEEEES-TTT--SHSC
T ss_pred             cceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhh----cccccccccccccccc--cccc
Confidence            458999999999999998874       36789999999999998887665321    1123345688888642  2222


Q ss_pred             C-CCcccEEEEeCCCCcc--ccccc-----------cccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          139 E-KGQLTKMFFLFPDPHF--KEKNH-----------RRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       139 ~-~~s~d~i~~~fpdP~~--k~~h~-----------krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      . ...+|.|+.|.|---.  .....           .+.-..-.|+..+.+.|++||++.+.....-
T Consensus       121 ~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp~~~  187 (311)
T PF02384_consen  121 IKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILPNGF  187 (311)
T ss_dssp             TST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEEHHH
T ss_pred             ccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEecchh
Confidence            2 5789999999764322  11110           0011123589999999999999888776543

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.38  E-value=2.1e-06  Score=72.03  Aligned_cols=104  Identities=16%  Similarity=0.282  Sum_probs=82.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC---CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE---KG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~---~~  141 (252)
                      ..++||||.=+|..++..|...| +..++++|+++...+.+....+..     .--..|.++++++.+.|+..++   .+
T Consensus        74 ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~a-----gv~~KI~~i~g~a~esLd~l~~~~~~~  148 (237)
T KOG1663|consen   74 AKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLA-----GVDHKITFIEGPALESLDELLADGESG  148 (237)
T ss_pred             CceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhc-----cccceeeeeecchhhhHHHHHhcCCCC
Confidence            44899999999999999999977 679999999999999887665443     2234699999999888776554   47


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      +||.+|+   |.| |     .+  ...+.+++.++|++||+|++
T Consensus       149 tfDfaFv---Dad-K-----~n--Y~~y~e~~l~Llr~GGvi~~  181 (237)
T KOG1663|consen  149 TFDFAFV---DAD-K-----DN--YSNYYERLLRLLRVGGVIVV  181 (237)
T ss_pred             ceeEEEE---ccc-h-----HH--HHHHHHHHHhhcccccEEEE
Confidence            8888887   444 1     21  22689999999999999987

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=98.38  E-value=3e-07  Score=84.97  Aligned_cols=98  Identities=18%  Similarity=0.219  Sum_probs=65.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEe---cCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGME---LRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiD---is~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      .++||||||.|.|+..|..+  +...+.+-   ..+..++.|.+          .|++-+--+-+.  ..|+  |++++|
T Consensus       119 R~~LDvGcG~aSF~a~l~~r--~V~t~s~a~~d~~~~qvqfale----------RGvpa~~~~~~s--~rLP--fp~~~f  182 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLER--NVTTMSFAPNDEHEAQVQFALE----------RGVPAMIGVLGS--QRLP--FPSNAF  182 (506)
T ss_pred             EEEEeccceeehhHHHHhhC--CceEEEcccccCCchhhhhhhh----------cCcchhhhhhcc--cccc--CCccch
Confidence            48999999999999999998  44443333   33344444432          245432222222  2455  889999


Q ss_pred             cEEEEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          144 TKMFFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       144 d~i~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |.|++. .-.||.....        -+|-++-|+|+|||.++++..
T Consensus       183 DmvHcsrc~i~W~~~~g--------~~l~evdRvLRpGGyfv~S~p  220 (506)
T PF03141_consen  183 DMVHCSRCLIPWHPNDG--------FLLFEVDRVLRPGGYFVLSGP  220 (506)
T ss_pred             hhhhcccccccchhccc--------ceeehhhhhhccCceEEecCC
Confidence            999863 4477865332        388899999999999998754

; GO: 0008168 methyltransferase activity

>PRK04148 hypothetical protein; Provisional

Probab=98.37  E-value=3.3e-06  Score=65.70  Aligned_cols=91  Identities=15%  Similarity=0.208  Sum_probs=62.6

Q ss_pred             ceEEEEcCcccH-HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGG-LLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~-~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..+||||||.|. ++..|++.  +..|+|+|+++.+++.|+.+             .+.++.+|+.+  ++.---..+|.
T Consensus        18 ~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-------------~~~~v~dDlf~--p~~~~y~~a~l   80 (134)
T PRK04148         18 KKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-------------GLNAFVDDLFN--PNLEIYKNAKL   80 (134)
T ss_pred             CEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-------------CCeEEECcCCC--CCHHHHhcCCE
Confidence            479999999996 88888876  67999999999988766542             26788888753  21111356899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+..-|.|-.          ++ .+..+++.+  |.-++|.+
T Consensus        81 iysirpp~el----------~~-~~~~la~~~--~~~~~i~~  109 (134)
T PRK04148         81 IYSIRPPRDL----------QP-FILELAKKI--NVPLIIKP  109 (134)
T ss_pred             EEEeCCCHHH----------HH-HHHHHHHHc--CCCEEEEc
Confidence            9988776652          22 333344433  66777765

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=98.36  E-value=2.6e-06  Score=81.10  Aligned_cols=80  Identities=19%  Similarity=0.215  Sum_probs=54.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC--------CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP--------EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY  137 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p--------~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~  137 (252)
                      ...|||.|||+|.++++++...+        ..+++|+|+++.++..|..++...      +...+.+...|........
T Consensus        32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~------~~~~~~i~~~d~l~~~~~~  105 (524)
T TIGR02987        32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEF------ALLEINVINFNSLSYVLLN  105 (524)
T ss_pred             ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhc------CCCCceeeecccccccccc
Confidence            45899999999999999998754        257899999999999988777543      1112444555532111000


Q ss_pred             C--CCCcccEEEEeCC
Q 025470          138 F--EKGQLTKMFFLFP  151 (252)
Q Consensus       138 ~--~~~s~d~i~~~fp  151 (252)
                      .  ..+.+|.|+.|.|
T Consensus       106 ~~~~~~~fD~IIgNPP  121 (524)
T TIGR02987       106 IESYLDLFDIVITNPP  121 (524)
T ss_pred             cccccCcccEEEeCCC
Confidence            1  1257999999865

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=98.35  E-value=3.9e-06  Score=74.80  Aligned_cols=106  Identities=10%  Similarity=0.165  Sum_probs=71.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHC----CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE--EeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLF----PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV--VRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~----p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~--~~~da~~~l~~~~~  139 (252)
                      ...++|+|||+|.-+..|.+..    ....|++||||.++++.+..++..      ...++|.+  +.+|..+.+. +++
T Consensus        77 ~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~------~~~p~l~v~~l~gdy~~~l~-~l~  149 (319)
T TIGR03439        77 GSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPL------GNFSHVRCAGLLGTYDDGLA-WLK  149 (319)
T ss_pred             CCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhh------ccCCCeEEEEEEecHHHHHh-hcc
Confidence            3489999999999877665543    357899999999999888877642      24566666  7787654332 222


Q ss_pred             C----CcccEEEE------eCCCCccccccccccccCHHHHHHHHH-hhcCCcEEEEEeCc
Q 025470          140 K----GQLTKMFF------LFPDPHFKEKNHRRRVISPHLLDEYAY-VLGVGGIIYTITDV  189 (252)
Q Consensus       140 ~----~s~d~i~~------~fpdP~~k~~h~krr~~~~~~l~~~~~-~LkpgG~l~~~td~  189 (252)
                      .    ..-..++.      ||+.+-           ...||+.+++ .|+|||.|.+-.|-
T Consensus       150 ~~~~~~~~r~~~flGSsiGNf~~~e-----------a~~fL~~~~~~~l~~~d~lLiG~D~  199 (319)
T TIGR03439       150 RPENRSRPTTILWLGSSIGNFSRPE-----------AAAFLAGFLATALSPSDSFLIGLDG  199 (319)
T ss_pred             cccccCCccEEEEeCccccCCCHHH-----------HHHHHHHHHHhhCCCCCEEEEecCC
Confidence            1    11222221      222211           2369999999 99999999997774

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.35  E-value=1.7e-06  Score=67.71  Aligned_cols=95  Identities=17%  Similarity=0.262  Sum_probs=66.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..++|+|||.|.+..+.+- .....++|+||++++++.+..|..+.+      + ++.++++|+.+   ..+..+.+|.
T Consensus        49 gkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNaeEfE------v-qidlLqcdild---le~~~g~fDt  117 (185)
T KOG3420|consen   49 GKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNAEEFE------V-QIDLLQCDILD---LELKGGIFDT  117 (185)
T ss_pred             CcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhchHHhh------h-hhheeeeeccc---hhccCCeEee
Confidence            55799999999988833332 234579999999999999998887652      2 46899999753   2345689999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhh
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL  177 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L  177 (252)
                      .++|.|..- |.+|+     ..+|+....++.
T Consensus       118 aviNppFGT-k~~~a-----Dm~fv~~al~~~  143 (185)
T KOG3420|consen  118 AVINPPFGT-KKKGA-----DMEFVSAALKVA  143 (185)
T ss_pred             EEecCCCCc-ccccc-----cHHHHHHHHHHH
Confidence            999877654 22333     345555554444

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.34  E-value=3.6e-06  Score=71.63  Aligned_cols=96  Identities=13%  Similarity=0.059  Sum_probs=59.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...+||||||+|.++..+++. +...++|||+++.|+...   +....+....+..|++  ..+..+ +.  ..-..+|.
T Consensus        76 ~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~---l~~~~~v~~~~~~ni~--~~~~~~-~~--~d~~~~Dv  146 (228)
T TIGR00478        76 NKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEK---LRQDERVKVLERTNIR--YVTPAD-IF--PDFATFDV  146 (228)
T ss_pred             CCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHH---HhcCCCeeEeecCCcc--cCCHhH-cC--CCceeeeE
Confidence            458999999999999999997 346899999999887541   1110000011333444  122221 11  11236676


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +++...                -.+..+...|++ |.+++..
T Consensus       147 sfiS~~----------------~~l~~i~~~l~~-~~~~~L~  171 (228)
T TIGR00478       147 SFISLI----------------SILPELDLLLNP-NDLTLLF  171 (228)
T ss_pred             EEeehH----------------hHHHHHHHHhCc-CeEEEEc
Confidence            665431                278889999999 7766543

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=98.32  E-value=9.1e-06  Score=70.66  Aligned_cols=147  Identities=17%  Similarity=0.197  Sum_probs=101.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCC--CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccc--cCccCCC-
Q 025470           67 IQFADIGCGFGGLLISLSTLFPE--VLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKY--IPNYFEK-  140 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~--~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~--l~~~~~~-  140 (252)
                      -.||||.||.|.+.+.....+|.  ..+.-.|.|+..++..++.+.+      .++.++ +|.++||.+.  +...-+. 
T Consensus       137 vrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~------~gL~~i~~f~~~dAfd~~~l~~l~p~P  210 (311)
T PF12147_consen  137 VRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAE------RGLEDIARFEQGDAFDRDSLAALDPAP  210 (311)
T ss_pred             eEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHH------cCCccceEEEecCCCCHhHhhccCCCC
Confidence            48999999999999999999886  6899999999999998887765      488887 9999998642  1111111 


Q ss_pred             --CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe-CchHHHHHHHHHHhcCCC-ccccccccccc
Q 025470          141 --GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEELGDWMRSCLENHPM-FEALTKEELEA  216 (252)
Q Consensus       141 --~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  216 (252)
                        ..++.++=+|||--.          -...++-++..|.|||.++.+- +|....+.+...+.+|.. -.++       
T Consensus       211 ~l~iVsGL~ElF~Dn~l----------v~~sl~gl~~al~pgG~lIyTgQPwHPQle~IAr~LtsHr~g~~Wv-------  273 (311)
T PF12147_consen  211 TLAIVSGLYELFPDNDL----------VRRSLAGLARALEPGGYLIYTGQPWHPQLEMIARVLTSHRDGKAWV-------  273 (311)
T ss_pred             CEEEEecchhhCCcHHH----------HHHHHHHHHHHhCCCcEEEEcCCCCCcchHHHHHHHhcccCCCceE-------
Confidence              224444557887431          1246888999999999997753 466777777777766521 1112       


Q ss_pred             CccccCCCCCCHHHHHHHHcCCCe
Q 025470          217 DPVVKLLSSATEEGQKVARNGGQT  240 (252)
Q Consensus       217 ~p~~~~~~~~t~~e~~~~~~G~~i  240 (252)
                         +. -++.-+..+.+..+|+..
T Consensus       274 ---MR-rRsq~EmD~Lv~~aGF~K  293 (311)
T PF12147_consen  274 ---MR-RRSQAEMDQLVEAAGFEK  293 (311)
T ss_pred             ---EE-ecCHHHHHHHHHHcCCch
Confidence               00 023335666777777754

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=98.32  E-value=2e-06  Score=75.55  Aligned_cols=115  Identities=19%  Similarity=0.243  Sum_probs=87.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+++|.|.=+..+|+... ...+++.|++...+.....++..+      +..|+.++..|+....+ ......+|
T Consensus        86 ~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~------g~~~v~~~~~D~~~~~~-~~~~~~fd  158 (283)
T PF01189_consen   86 GERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRL------GVFNVIVINADARKLDP-KKPESKFD  158 (283)
T ss_dssp             TSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHT------T-SSEEEEESHHHHHHH-HHHTTTEE
T ss_pred             cccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhc------CCceEEEEeeccccccc-cccccccc
Confidence            55899999999999999999966 678999999999999888887665      89999999999875322 23344699


Q ss_pred             EEEEeCCCCccc--ccc--ccc----------cccCHHHHHHHHHhh----cCCcEEEEEe
Q 025470          145 KMFFLFPDPHFK--EKN--HRR----------RVISPHLLDEYAYVL----GVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k--~~h--~kr----------r~~~~~~l~~~~~~L----kpgG~l~~~t  187 (252)
                      .|.+.-|.-...  .++  .+.          --++..+|+.+.+.|    ||||+++.+|
T Consensus       159 ~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT  219 (283)
T PF01189_consen  159 RVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST  219 (283)
T ss_dssp             EEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred             hhhcCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence            999987743321  001  011          124678999999999    9999999987

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.32  E-value=2.8e-06  Score=79.11  Aligned_cols=103  Identities=17%  Similarity=0.173  Sum_probs=66.8

Q ss_pred             CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ..+|||||||+|.++...+++    .....|++||.++.++...+..+...     ..-++|.++++|+.+ +.   .+.
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n-----~w~~~V~vi~~d~r~-v~---lpe  257 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNAN-----GWGDKVTVIHGDMRE-VE---LPE  257 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHT-----TTTTTEEEEES-TTT-SC---HSS
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhc-----CCCCeEEEEeCcccC-CC---CCC
Confidence            458999999999998766555    33578999999998876665554432     223679999999874 43   245


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII  183 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l  183 (252)
                      .+|.|+.=.-.-.-      -.-..++.|....+.|||||.+
T Consensus       258 kvDIIVSElLGsfg------~nEl~pE~Lda~~rfLkp~Gi~  293 (448)
T PF05185_consen  258 KVDIIVSELLGSFG------DNELSPECLDAADRFLKPDGIM  293 (448)
T ss_dssp             -EEEEEE---BTTB------TTTSHHHHHHHGGGGEEEEEEE
T ss_pred             ceeEEEEeccCCcc------ccccCHHHHHHHHhhcCCCCEE
Confidence            78888752111000      0012356788889999999876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.31  E-value=2.2e-06  Score=67.04  Aligned_cols=58  Identities=16%  Similarity=0.173  Sum_probs=50.2

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM  131 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~  131 (252)
                      ++||||||.|.++..+++..|...++++|.++.+++.+++++...      +.+|+.++...+.
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n------~~~~v~~~~~al~   58 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLN------NLPNVVLLNAAVG   58 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHc------CCCcEEEEEeeee
Confidence            489999999999999999998889999999999999988887553      5678888887654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.28  E-value=1e-05  Score=73.06  Aligned_cols=111  Identities=14%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             eEEEEcCcccHHHHHHHHHCCC--------------------------------C-------eEEEEecCHhHHHHHHHH
Q 025470           68 QFADIGCGFGGLLISLSTLFPE--------------------------------V-------LMIGMELRDKVTEYVKER  108 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~--------------------------------~-------~~iGiDis~~~i~~a~~~  108 (252)
                      .++|-=||+|++++..|...++                                .       .++|+|+++.+++.|+.|
T Consensus       194 pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~Ak~N  273 (381)
T COG0116         194 PLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGAKAN  273 (381)
T ss_pred             ccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHHHHH
Confidence            5899999999999999998653                                1       278999999999999999


Q ss_pred             HHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccc---cCHHHHHHHHHhhcCCcEEEE
Q 025470          109 ILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRV---ISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       109 ~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~---~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      +..+     +-.+-|.|.++|+.. +...+  .+++.|+.|.|  + -.|-....+   +...|.+.+.+.++--+..+|
T Consensus       274 A~~A-----Gv~d~I~f~~~d~~~-l~~~~--~~~gvvI~NPP--Y-GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~  342 (381)
T COG0116         274 ARAA-----GVGDLIEFKQADATD-LKEPL--EEYGVVISNPP--Y-GERLGSEALVAKLYREFGRTLKRLLAGWSRYVF  342 (381)
T ss_pred             HHhc-----CCCceEEEEEcchhh-CCCCC--CcCCEEEeCCC--c-chhcCChhhHHHHHHHHHHHHHHHhcCCceEEE
Confidence            8765     233569999999974 55433  68899998764  2 222221111   235566677777777788888


Q ss_pred             EeCc
Q 025470          186 ITDV  189 (252)
Q Consensus       186 ~td~  189 (252)
                      +|+-
T Consensus       343 tt~e  346 (381)
T COG0116         343 TTSE  346 (381)
T ss_pred             EccH
Confidence            8854

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=98.27  E-value=1.8e-06  Score=72.30  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=60.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---CCCCcccEEEEeCCcccc--cCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---NPGQYQNISVVRTNSMKY--IPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~~~~da~~~--l~~~~~~  140 (252)
                      ..+++|||||.|...+..|...+-...+|||+.+...+.|......++..   -......+.+.++|..+.  ....+  
T Consensus        43 ~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~--  120 (205)
T PF08123_consen   43 DDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW--  120 (205)
T ss_dssp             T-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG--
T ss_pred             CCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh--
Confidence            56999999999999999998876556999999999888887655444321   112345788888886421  11111  


Q ss_pred             CcccEEEEe---CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFL---FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~---fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...|.|++|   |.++-.            .-|.+....||+|-+|+ ++
T Consensus       121 s~AdvVf~Nn~~F~~~l~------------~~L~~~~~~lk~G~~II-s~  157 (205)
T PF08123_consen  121 SDADVVFVNNTCFDPDLN------------LALAELLLELKPGARII-ST  157 (205)
T ss_dssp             HC-SEEEE--TTT-HHHH------------HHHHHHHTTS-TT-EEE-ES
T ss_pred             cCCCEEEEeccccCHHHH------------HHHHHHHhcCCCCCEEE-EC
Confidence            245788886   221110            24455556777777764 44

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=98.25  E-value=2.1e-06  Score=71.33  Aligned_cols=104  Identities=19%  Similarity=0.242  Sum_probs=59.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .-+|-|+|||.+.++..+.   ....|...|+-..                     |=.++.+|+. .+|  ++++++|.
T Consensus        73 ~~viaD~GCGdA~la~~~~---~~~~V~SfDLva~---------------------n~~Vtacdia-~vP--L~~~svDv  125 (219)
T PF05148_consen   73 SLVIADFGCGDAKLAKAVP---NKHKVHSFDLVAP---------------------NPRVTACDIA-NVP--LEDESVDV  125 (219)
T ss_dssp             TS-EEEES-TT-HHHHH-----S---EEEEESS-S---------------------STTEEES-TT-S-S----TT-EEE
T ss_pred             CEEEEECCCchHHHHHhcc---cCceEEEeeccCC---------------------CCCEEEecCc-cCc--CCCCceeE
Confidence            3489999999997664432   1347899997431                     2236678885 576  78999999


Q ss_pred             EEEeCC---CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH--HHHHHHHHHhcCCCcccc
Q 025470          146 MFFLFP---DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE--LGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       146 i~~~fp---dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~--~~~~~~~~~~~~~~~~~~  209 (252)
                      ++...+   .-|.            .|+.+..|+|||||.+.|+--...  -.....+.+...+ |...
T Consensus       126 ~VfcLSLMGTn~~------------~fi~EA~RvLK~~G~L~IAEV~SRf~~~~~F~~~~~~~G-F~~~  181 (219)
T PF05148_consen  126 AVFCLSLMGTNWP------------DFIREANRVLKPGGILKIAEVKSRFENVKQFIKALKKLG-FKLK  181 (219)
T ss_dssp             EEEES---SS-HH------------HHHHHHHHHEEEEEEEEEEEEGGG-S-HHHHHHHHHCTT-EEEE
T ss_pred             EEEEhhhhCCCcH------------HHHHHHHheeccCcEEEEEEecccCcCHHHHHHHHHHCC-CeEE
Confidence            886542   4453            699999999999999999742211  1233344455443 5444

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=98.23  E-value=7.2e-06  Score=68.25  Aligned_cols=104  Identities=10%  Similarity=0.153  Sum_probs=76.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.+||+||+|.|.....+.++.|...+ -||..+..++.-+..       ....-.||.++.+-..+.++ .++++.||.
T Consensus       102 ggrvLnVGFGMgIidT~iQe~~p~~H~-IiE~hp~V~krmr~~-------gw~ek~nViil~g~WeDvl~-~L~d~~FDG  172 (271)
T KOG1709|consen  102 GGRVLNVGFGMGIIDTFIQEAPPDEHW-IIEAHPDVLKRMRDW-------GWREKENVIILEGRWEDVLN-TLPDKHFDG  172 (271)
T ss_pred             CceEEEeccchHHHHHHHhhcCCcceE-EEecCHHHHHHHHhc-------ccccccceEEEecchHhhhc-cccccCcce
Confidence            569999999999999999888887655 589999876544322       23456799999998876565 578899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |+..-=.|....-        ..|.+.+.++|||+|++-+.
T Consensus       173 I~yDTy~e~yEdl--------~~~hqh~~rLLkP~gv~Syf  205 (271)
T KOG1709|consen  173 IYYDTYSELYEDL--------RHFHQHVVRLLKPEGVFSYF  205 (271)
T ss_pred             eEeechhhHHHHH--------HHHHHHHhhhcCCCceEEEe
Confidence            9874222222111        14788899999999999774

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=98.19  E-value=1e-05  Score=69.38  Aligned_cols=93  Identities=16%  Similarity=0.155  Sum_probs=64.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...+||||.|.|+.+..+|..+.  .+.+.|.|+.|....++          .|   ..++..|-   +.+  .+..+|.
T Consensus        95 ~~~lLDlGAGdG~VT~~l~~~f~--~v~aTE~S~~Mr~rL~~----------kg---~~vl~~~~---w~~--~~~~fDv  154 (265)
T PF05219_consen   95 DKSLLDLGAGDGEVTERLAPLFK--EVYATEASPPMRWRLSK----------KG---FTVLDIDD---WQQ--TDFKFDV  154 (265)
T ss_pred             CCceEEecCCCcHHHHHHHhhcc--eEEeecCCHHHHHHHHh----------CC---CeEEehhh---hhc--cCCceEE
Confidence            34799999999999999999976  48999999999643221          23   34444432   222  1457898


Q ss_pred             EEE-eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFF-LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~-~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.+ |.-|-..     +    -..+|+.+.+.|+|+|+++++.
T Consensus       155 IscLNvLDRc~-----~----P~~LL~~i~~~l~p~G~lilAv  188 (265)
T PF05219_consen  155 ISCLNVLDRCD-----R----PLTLLRDIRRALKPNGRLILAV  188 (265)
T ss_pred             EeehhhhhccC-----C----HHHHHHHHHHHhCCCCEEEEEE
Confidence            875 3332211     1    1159999999999999999865

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=98.19  E-value=9.7e-06  Score=68.14  Aligned_cols=96  Identities=22%  Similarity=0.241  Sum_probs=75.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc-ccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ-LTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s-~d~  145 (252)
                      ..++|||+|.|-=++-+|-.+|+.+|+-+|...+.+.+.+.-..++      +++|+.++++.+.+ +..   ... +|.
T Consensus        69 ~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL------~L~nv~i~~~RaE~-~~~---~~~~~D~  138 (215)
T COG0357          69 KRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKEL------GLENVEIVHGRAEE-FGQ---EKKQYDV  138 (215)
T ss_pred             CEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHh------CCCCeEEehhhHhh-ccc---ccccCcE
Confidence            5899999999999999999999999999999999888877766665      89999999999975 332   112 888


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      |..---.+.            ..+++-+...||+||.+.
T Consensus       139 vtsRAva~L------------~~l~e~~~pllk~~g~~~  165 (215)
T COG0357         139 VTSRAVASL------------NVLLELCLPLLKVGGGFL  165 (215)
T ss_pred             EEeehccch------------HHHHHHHHHhcccCCcch
Confidence            875321111            248888889999988864

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=98.15  E-value=4.6e-05  Score=57.78  Aligned_cols=103  Identities=22%  Similarity=0.339  Sum_probs=67.3

Q ss_pred             EEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-cCccCCC-CcccE
Q 025470           69 FADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-IPNYFEK-GQLTK  145 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-l~~~~~~-~s~d~  145 (252)
                      ++|+|||.|... .++...+. ..++|+|+++.++..+......      ....++.++..|.... ++  +.. ..+|.
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~--~~~~~~~d~  122 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEG------AGLGLVDFVVADALGGVLP--FEDSASFDL  122 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhh------cCCCceEEEEeccccCCCC--CCCCCceeE
Confidence            999999999987 44444433 4789999999988763322110      1111167888886531 22  444 47888


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      + ......+...        ....+.++.+.|+|+|.+.+....
T Consensus       123 ~-~~~~~~~~~~--------~~~~~~~~~~~l~~~g~~~~~~~~  157 (257)
T COG0500         123 V-ISLLVLHLLP--------PAKALRELLRVLKPGGRLVLSDLL  157 (257)
T ss_pred             E-eeeeehhcCC--------HHHHHHHHHHhcCCCcEEEEEecc
Confidence            8 4433322110        236999999999999999997765

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=98.14  E-value=7.6e-06  Score=69.85  Aligned_cols=81  Identities=21%  Similarity=0.357  Sum_probs=59.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.+|-|+|||-+.++.    .. ...|+.+|+-+                     .|=+++.+|+. .++  ++++++|.
T Consensus       181 ~~vIaD~GCGEakiA~----~~-~~kV~SfDL~a---------------------~~~~V~~cDm~-~vP--l~d~svDv  231 (325)
T KOG3045|consen  181 NIVIADFGCGEAKIAS----SE-RHKVHSFDLVA---------------------VNERVIACDMR-NVP--LEDESVDV  231 (325)
T ss_pred             ceEEEecccchhhhhh----cc-ccceeeeeeec---------------------CCCceeecccc-CCc--CccCcccE
Confidence            4589999999995544    32 23688888632                     24567888987 466  77999998


Q ss_pred             EEEeCC---CCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFP---DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fp---dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +++..+   .-|            .+|+.++.|+|++||.++|+-
T Consensus       232 aV~CLSLMgtn~------------~df~kEa~RiLk~gG~l~IAE  264 (325)
T KOG3045|consen  232 AVFCLSLMGTNL------------ADFIKEANRILKPGGLLYIAE  264 (325)
T ss_pred             EEeeHhhhcccH------------HHHHHHHHHHhccCceEEEEe
Confidence            876432   222            269999999999999999974

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.10  E-value=6.6e-06  Score=69.14  Aligned_cols=102  Identities=13%  Similarity=0.160  Sum_probs=76.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|.++|||||-|.....+-... -..+|-+|.|..|++.++..       +..++. +....+|- +.|+  |.++++|.
T Consensus        73 fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~-------qdp~i~-~~~~v~DE-E~Ld--f~ens~DL  140 (325)
T KOG2940|consen   73 FPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDA-------QDPSIE-TSYFVGDE-EFLD--FKENSVDL  140 (325)
T ss_pred             CcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhcc-------CCCceE-EEEEecch-hccc--ccccchhh
Confidence            5789999999999999888886 44789999999999876531       122333 44445664 4676  88999999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+....-.|...        -+..+.++...|||+|.|+-..
T Consensus       141 iisSlslHW~Nd--------LPg~m~~ck~~lKPDg~Fiasm  174 (325)
T KOG2940|consen  141 IISSLSLHWTND--------LPGSMIQCKLALKPDGLFIASM  174 (325)
T ss_pred             hhhhhhhhhhcc--------CchHHHHHHHhcCCCccchhHH
Confidence            987777667532        2468889999999999987643

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=98.09  E-value=6.5e-06  Score=67.30  Aligned_cols=105  Identities=15%  Similarity=0.128  Sum_probs=65.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-----ccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-----YIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-----~l~~~~~  139 (252)
                      ...+||+||+.|.++..++++. +...++|||+.+.                 ...+++.++++|...     .+...+.
T Consensus        24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------------~~~~~~~~i~~d~~~~~~~~~i~~~~~   86 (181)
T PF01728_consen   24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------------DPLQNVSFIQGDITNPENIKDIRKLLP   86 (181)
T ss_dssp             TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------------GS-TTEEBTTGGGEEEEHSHHGGGSHG
T ss_pred             ccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------------ccccceeeeecccchhhHHHhhhhhcc
Confidence            4699999999999999999996 6789999999764                 134567777777643     1233333


Q ss_pred             C--CcccEEEEeCCCCccccc---cc-cccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          140 K--GQLTKMFFLFPDPHFKEK---NH-RRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       140 ~--~s~d~i~~~fpdP~~k~~---h~-krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .  ..+|.|......+....+   +. .-++ ....+..+...|+|||.+++.+-
T Consensus        87 ~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l-~~~~l~~a~~~L~~gG~~v~K~~  140 (181)
T PF01728_consen   87 ESGEKFDLVLSDMAPNVSGDRNIDEFISIRL-ILSQLLLALELLKPGGTFVIKVF  140 (181)
T ss_dssp             TTTCSESEEEE-------SSHHSSHHHHHHH-HHHHHHHHHHHHCTTEEEEEEES
T ss_pred             ccccCcceeccccccCCCCchhhHHHHHHHH-HHHHHHHHHhhhcCCCEEEEEec
Confidence            2  689999876522221110   11 1111 12344466688999999888763

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=98.03  E-value=7.8e-05  Score=66.68  Aligned_cols=132  Identities=16%  Similarity=0.207  Sum_probs=100.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCC--cccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~--~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...||-+|-|.|.-+.++.+. | -.+++-||++|+|++.++++. .+|..+.+.  -++++++..||...+..  ..+.
T Consensus       290 a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~-vlr~~N~~sf~dpRv~Vv~dDAf~wlr~--a~~~  365 (508)
T COG4262         290 ARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHAT-VLRALNQGSFSDPRVTVVNDDAFQWLRT--AADM  365 (508)
T ss_pred             cceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhh-HhhhhccCCccCCeeEEEeccHHHHHHh--hccc
Confidence            568999999999877777654 6 568999999999999988542 334333333  45799999999865542  2568


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhcCC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLENHP  204 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~~~  204 (252)
                      +|.|++.+|||--   -.-.|+-+.+|-..+.+.|+++|.++++.-+    ++.+..+...+++.+
T Consensus       366 fD~vIVDl~DP~t---ps~~rlYS~eFY~ll~~~l~e~Gl~VvQags~y~tp~vfw~i~aTik~AG  428 (508)
T COG4262         366 FDVVIVDLPDPST---PSIGRLYSVEFYRLLSRHLAETGLMVVQAGSPYFTPRVFWRIDATIKSAG  428 (508)
T ss_pred             ccEEEEeCCCCCC---cchhhhhhHHHHHHHHHhcCcCceEEEecCCCccCCceeeeehhHHHhCc
Confidence            9999999999963   2345777889999999999999999998643    355666677777664

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.03  E-value=3.2e-05  Score=68.41  Aligned_cols=100  Identities=15%  Similarity=0.253  Sum_probs=68.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..+|||+|||+|.++...|+.. ...+++||-|. |.+.|+..+...     .-.++|.++.+-+.+ +.  + +..+|.
T Consensus       178 ~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~-MAqyA~~Lv~~N-----~~~~rItVI~GKiEd-ie--L-PEk~Dv  246 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASE-MAQYARKLVASN-----NLADRITVIPGKIED-IE--L-PEKVDV  246 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHhC-cceEEEEehhH-HHHHHHHHHhcC-----CccceEEEccCcccc-cc--C-chhccE
Confidence            4599999999999999888885 45799999764 677887665432     334678999988764 43  3 456777


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHH---HHhhcCCcEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEY---AYVLGVGGIIYT  185 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~---~~~LkpgG~l~~  185 (252)
                      |+.   .|.      .-.++++..|+.+   .+.|||.|..+=
T Consensus       247 iIS---EPM------G~mL~NERMLEsYl~Ark~l~P~GkMfP  280 (517)
T KOG1500|consen  247 IIS---EPM------GYMLVNERMLESYLHARKWLKPNGKMFP  280 (517)
T ss_pred             EEe---ccc------hhhhhhHHHHHHHHHHHhhcCCCCcccC
Confidence            664   332      1234555565544   489999987643

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=98.02  E-value=1.8e-06  Score=64.34  Aligned_cols=100  Identities=17%  Similarity=0.197  Sum_probs=42.5

Q ss_pred             EEEcCcccHHHHHHHHHCCCC---eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           70 ADIGCGFGGLLISLSTLFPEV---LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        70 LDIGcG~G~~~~~lA~~~p~~---~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      |||||..|..++.+++..+..   .++++|..+. .+.+++.+++.     .-..++.+++++..+.++. ++...+|.|
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~-~~~~~~dli   73 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPS-LPDGPIDLI   73 (106)
T ss_dssp             --------------------------EEEESS-------------G-----GG-BTEEEEES-THHHHHH-HHH--EEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhc-----CCCCeEEEEEcCcHHHHHH-cCCCCEEEE
Confidence            799999999999999876543   6899999985 22222222221     1235799999999876653 335789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ++.-.-...         .....++.+.+.|+|||.+++
T Consensus        74 ~iDg~H~~~---------~~~~dl~~~~~~l~~ggviv~  103 (106)
T PF13578_consen   74 FIDGDHSYE---------AVLRDLENALPRLAPGGVIVF  103 (106)
T ss_dssp             EEES---HH---------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             EECCCCCHH---------HHHHHHHHHHHHcCCCeEEEE
Confidence            986421110         012477888899999999887

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=97.99  E-value=2.6e-05  Score=67.05  Aligned_cols=75  Identities=13%  Similarity=0.244  Sum_probs=56.8

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..+|||||-|+|.++..|.+.  +..|+++|+++.|+....++.+..     .....++++.+|... .+  +  --+|
T Consensus        58 ~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gt-----p~~~kLqV~~gD~lK-~d--~--P~fd  125 (315)
T KOG0820|consen   58 PTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGT-----PKSGKLQVLHGDFLK-TD--L--PRFD  125 (315)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCC-----CccceeeEEeccccc-CC--C--cccc
Confidence            3569999999999999999999  779999999999998877765321     223469999999763 33  1  2456


Q ss_pred             EEEEeCC
Q 025470          145 KMFFLFP  151 (252)
Q Consensus       145 ~i~~~fp  151 (252)
                      .++.|.|
T Consensus       126 ~cVsNlP  132 (315)
T KOG0820|consen  126 GCVSNLP  132 (315)
T ss_pred             eeeccCC
Confidence            6666544

>PRK00536 speE spermidine synthase; Provisional

Probab=97.97  E-value=0.00014  Score=63.04  Aligned_cols=113  Identities=8%  Similarity=-0.001  Sum_probs=81.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||=||-|.|..+.++.+. |. +++-|||++.+++.+++-+.....  ...-+++.++. .   ...  -..+++|.|
T Consensus        74 k~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~--~~~DpRv~l~~-~---~~~--~~~~~fDVI  143 (262)
T PRK00536         74 KEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAK-Q---LLD--LDIKKYDLI  143 (262)
T ss_pred             CeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHH--hhcCCCEEEee-h---hhh--ccCCcCCEE
Confidence            47999999999999999988 44 899999999999999886554321  12445677764 1   111  124689999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~  202 (252)
                      ++.-.++             +.|.+.+.+.|+|||.++.++-+.    +.+..+...+.+
T Consensus       144 IvDs~~~-------------~~fy~~~~~~L~~~Gi~v~Qs~sp~~~~~~~~~i~~~l~~  190 (262)
T PRK00536        144 ICLQEPD-------------IHKIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGD  190 (262)
T ss_pred             EEcCCCC-------------hHHHHHHHHhcCCCcEEEECCCCcccCHHHHHHHHHHHHh
Confidence            9873222             369999999999999999987554    344445555543

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.95  E-value=8.6e-05  Score=59.59  Aligned_cols=104  Identities=13%  Similarity=0.248  Sum_probs=75.0

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc---CCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY---FEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~---~~~~  141 (252)
                      +--|||+|.|+|-++-++..+ .++..+++||.|++.+....+           ..+.++++.+|+.. ++..   +...
T Consensus        49 glpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~-----------~~p~~~ii~gda~~-l~~~l~e~~gq  116 (194)
T COG3963          49 GLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQ-----------LYPGVNIINGDAFD-LRTTLGEHKGQ  116 (194)
T ss_pred             CCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHH-----------hCCCccccccchhh-HHHHHhhcCCC
Confidence            446999999999999998887 567789999999997654432           34567799999874 4422   3456


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+|.|+...|---+--  +    ..-.+|+.+...|.+||.++.-|
T Consensus       117 ~~D~viS~lPll~~P~--~----~~iaile~~~~rl~~gg~lvqft  156 (194)
T COG3963         117 FFDSVISGLPLLNFPM--H----RRIAILESLLYRLPAGGPLVQFT  156 (194)
T ss_pred             eeeeEEeccccccCcH--H----HHHHHHHHHHHhcCCCCeEEEEE
Confidence            7898886544211100  0    12369999999999999998766

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.91  E-value=3.3e-05  Score=60.76  Aligned_cols=63  Identities=22%  Similarity=0.380  Sum_probs=48.6

Q ss_pred             CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM  131 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~  131 (252)
                      ...|+|+|||.|.++..+|..    .++..++|||.++..++.+..+.....   .....++.+..++..
T Consensus        26 ~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~   92 (141)
T PF13679_consen   26 CITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLG---SDLEKRLSFIQGDIA   92 (141)
T ss_pred             CCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhc---chhhccchhhccchh
Confidence            458999999999999999992    278899999999999998888766541   111256777776654

>PRK10742 putative methyltransferase; Provisional

Probab=97.89  E-value=0.00024  Score=60.93  Aligned_cols=88  Identities=10%  Similarity=0.127  Sum_probs=67.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC--c-ccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--Y-QNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~--~-~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      .|.|||.=+|.|.-++.+|.+  ++.|++||.++.+....+.++.........+  + .++.++++|+...|.. . ..+
T Consensus        89 ~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~-~-~~~  164 (250)
T PRK10742         89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-I-TPR  164 (250)
T ss_pred             CCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh-C-CCC
Confidence            469999999999999999999  7789999999998888887776531111111  2 5799999999887764 3 347


Q ss_pred             ccEEEEeCCCCcccc
Q 025470          143 LTKMFFLFPDPHFKE  157 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~  157 (252)
                      +|.||+..|-|..++
T Consensus       165 fDVVYlDPMfp~~~k  179 (250)
T PRK10742        165 PQVVYLDPMFPHKQK  179 (250)
T ss_pred             CcEEEECCCCCCCcc
Confidence            999999777776543

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.89  E-value=0.00083  Score=56.53  Aligned_cols=122  Identities=13%  Similarity=0.059  Sum_probs=81.8

Q ss_pred             CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..||-+|..+|.....++.. .++..++|||.|+...+..-..+ +       .-+||-.+-.||...-....--+.+
T Consensus        73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la-~-------~R~NIiPIl~DAr~P~~Y~~lv~~V  144 (229)
T PF01269_consen   73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLA-K-------KRPNIIPILEDARHPEKYRMLVEMV  144 (229)
T ss_dssp             TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHH-H-------HSTTEEEEES-TTSGGGGTTTS--E
T ss_pred             CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHh-c-------cCCceeeeeccCCChHHhhcccccc
Confidence            3569999999999999999998 45889999999997654433222 2       3469999999997322111113489


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe---------CchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT---------DVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t---------d~~~~~~~~~~~~~~~~  204 (252)
                      |.|+.....|--          ..-++..+...||+||.+++..         +.+..+..-.+.+.+..
T Consensus       145 DvI~~DVaQp~Q----------a~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p~~vf~~e~~~L~~~~  204 (229)
T PF01269_consen  145 DVIFQDVAQPDQ----------ARIAALNARHFLKPGGHLIISIKARSIDSTADPEEVFAEEVKKLKEEG  204 (229)
T ss_dssp             EEEEEE-SSTTH----------HHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSHHHHHHHHHHHHHCTT
T ss_pred             cEEEecCCChHH----------HHHHHHHHHhhccCCcEEEEEEecCcccCcCCHHHHHHHHHHHHHHcC
Confidence            999987665531          1136677778999999888753         34556666666776643

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.85  E-value=4e-05  Score=64.24  Aligned_cols=146  Identities=14%  Similarity=0.128  Sum_probs=84.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~d  144 (252)
                      ....||.|+|-|..+-.+.... -..|--||..+..++.|++.+..      ....-..+.+..+.+    +-| ++.+|
T Consensus        56 ~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~------~~~~v~~~~~~gLQ~----f~P~~~~YD  124 (218)
T PF05891_consen   56 FNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGK------DNPRVGEFYCVGLQD----FTPEEGKYD  124 (218)
T ss_dssp             -SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCC------GGCCEEEEEES-GGG--------TT-EE
T ss_pred             cceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcc------cCCCcceEEecCHhh----ccCCCCcEe
Confidence            4589999999999998776554 34789999999999888764321      112235666666553    233 47999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLS  224 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  224 (252)
                      .|++.+.--+-....    +  -.||+.+...|+|+|.|+++-+...           .+ +.....    .|-  -..+
T Consensus       125 lIW~QW~lghLTD~d----l--v~fL~RCk~~L~~~G~IvvKEN~~~-----------~~-~~~~D~----~Ds--SvTR  180 (218)
T PF05891_consen  125 LIWIQWCLGHLTDED----L--VAFLKRCKQALKPNGVIVVKENVSS-----------SG-FDEFDE----EDS--SVTR  180 (218)
T ss_dssp             EEEEES-GGGS-HHH----H--HHHHHHHHHHEEEEEEEEEEEEEES-----------SS-EEEEET----TTT--EEEE
T ss_pred             EEEehHhhccCCHHH----H--HHHHHHHHHhCcCCcEEEEEecCCC-----------CC-CcccCC----ccC--eeec
Confidence            999987543321111    1  2499999999999999999764321           11 111110    010  0012


Q ss_pred             CCCHHHHHHHHcCCCeEEEEEE
Q 025470          225 SATEEGQKVARNGGQTFQAVFR  246 (252)
Q Consensus       225 ~~t~~e~~~~~~G~~i~~~~~~  246 (252)
                      +...|.+.+.++|..+-.-...
T Consensus       181 s~~~~~~lF~~AGl~~v~~~~Q  202 (218)
T PF05891_consen  181 SDEHFRELFKQAGLRLVKEEKQ  202 (218)
T ss_dssp             EHHHHHHHHHHCT-EEEEEEE-
T ss_pred             CHHHHHHHHHHcCCEEEEeccc
Confidence            3346788888888877665544

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.78  E-value=7.5e-05  Score=61.06  Aligned_cols=98  Identities=20%  Similarity=0.207  Sum_probs=69.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      .++.|+|+|+|.++.-.|..  ..+|++||.++...+.|.+|+      +-.+..|+.++.+||.. .+  |  ...|.|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~------~v~g~~n~evv~gDA~~-y~--f--e~ADvv  100 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENL------HVPGDVNWEVVVGDARD-YD--F--ENADVV  100 (252)
T ss_pred             hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcC------CCCCCcceEEEeccccc-cc--c--ccccee
Confidence            58999999999999888877  568999999999988888876      23588999999999974 22  3  234555


Q ss_pred             EEeCCCCc-cccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          147 FFLFPDPH-FKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       147 ~~~fpdP~-~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      .+-.-|-- ....       +-..++.+...|+-+|+++
T Consensus       101 icEmlDTaLi~E~-------qVpV~n~vleFLr~d~tii  132 (252)
T COG4076         101 ICEMLDTALIEEK-------QVPVINAVLEFLRYDPTII  132 (252)
T ss_pred             HHHHhhHHhhccc-------ccHHHHHHHHHhhcCCccc
Confidence            43221110 0000       1137777888888998885

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.78  E-value=4.4e-05  Score=67.15  Aligned_cols=108  Identities=12%  Similarity=0.209  Sum_probs=70.1

Q ss_pred             ceEEEEcCcccHHHHHHHHH----CC----CCeEEEEecCHhHHHHHHHHHHH---Hhhc---------CC-----CC--
Q 025470           67 IQFADIGCGFGGLLISLSTL----FP----EVLMIGMELRDKVTEYVKERILA---LRVS---------NP-----GQ--  119 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~----~p----~~~~iGiDis~~~i~~a~~~~~~---~~~~---------~~-----~~--  119 (252)
                      -.|.-.||++|+=.-.||-.    .+    +..++|+|||..+++.|++-+-.   ++..         ..     .+  
T Consensus       117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~  196 (287)
T PRK10611        117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV  196 (287)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence            48999999999754433332    22    46799999999999999764211   1100         00     01  


Q ss_pred             -----c-ccEEEEeCCcccccCccCCCCcccEEEE-----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          120 -----Y-QNISVVRTNSMKYIPNYFEKGQLTKMFF-----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       120 -----~-~nv~~~~~da~~~l~~~~~~~s~d~i~~-----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                           + ..|.|.+.|+.+  +.+.+.+.+|.|++     .|..+.           ...+++.+++.|+|||.|++-.
T Consensus       197 ~v~~~lr~~V~F~~~NL~~--~~~~~~~~fD~I~cRNvliyF~~~~-----------~~~vl~~l~~~L~pgG~L~lG~  262 (287)
T PRK10611        197 RVRQELANYVDFQQLNLLA--KQWAVPGPFDAIFCRNVMIYFDKTT-----------QERILRRFVPLLKPDGLLFAGH  262 (287)
T ss_pred             EEChHHHccCEEEcccCCC--CCCccCCCcceeeHhhHHhcCCHHH-----------HHHHHHHHHHHhCCCcEEEEeC
Confidence                 1 357888888753  12223578999986     342221           2369999999999999987743

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.76  E-value=0.00016  Score=60.28  Aligned_cols=137  Identities=10%  Similarity=0.123  Sum_probs=84.2

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCC-CCeEEE
Q 025470           16 LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFP-EVLMIG   94 (252)
Q Consensus        16 ~~~~~~~~~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iG   94 (252)
                      +-...||+.....++.++...+..      ..++-|.-.         .+...|+||||-.|.++..+++... ...++|
T Consensus        11 ~~~D~Y~~~Ak~~gyRSRAa~KL~------el~~k~~i~---------~~~~~ViDLGAAPGgWsQva~~~~~~~~~iva   75 (205)
T COG0293          11 HLRDPYYKKAKKEGYRSRAAYKLL------ELNEKFKLF---------KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVA   75 (205)
T ss_pred             hhcCHHHHHHhhccccchHHHHHH------HHHHhcCee---------cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEE
Confidence            344556655555556665544332      233334222         1256899999999999999999854 456999


Q ss_pred             EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-----ccCccCCCCcccEEEEeCCCCccccc------ccccc
Q 025470           95 MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-----YIPNYFEKGQLTKMFFLFPDPHFKEK------NHRRR  163 (252)
Q Consensus        95 iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-----~l~~~~~~~s~d~i~~~fpdP~~k~~------h~krr  163 (252)
                      ||+.+-                 ...++|.++++|+..     .+...+....+|.|...   .-++..      |...-
T Consensus        76 vDi~p~-----------------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD---~ap~~~g~~~~Dh~r~~  135 (205)
T COG0293          76 VDILPM-----------------KPIPGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSD---MAPNTSGNRSVDHARSM  135 (205)
T ss_pred             EECccc-----------------ccCCCceEEeeeccCccHHHHHHHHcCCCCcceEEec---CCCCcCCCccccHHHHH
Confidence            999763                 246679999999853     12223444556887753   222211      11111


Q ss_pred             ccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          164 VISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       164 ~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      -+....+..+..+|+|||.+++..
T Consensus       136 ~L~~~a~~~a~~vL~~~G~fv~K~  159 (205)
T COG0293         136 YLCELALEFALEVLKPGGSFVAKV  159 (205)
T ss_pred             HHHHHHHHHHHHeeCCCCeEEEEE
Confidence            122345666678999999998865

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=97.74  E-value=0.00038  Score=60.48  Aligned_cols=93  Identities=24%  Similarity=0.222  Sum_probs=64.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-CCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-EKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-~~~s~d  144 (252)
                      ...|||||.|.|.++..|++..  .++++||+++.+++..++++        ...+|+.++.+|+.. ++... ....-.
T Consensus        31 ~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~--------~~~~~~~vi~~D~l~-~~~~~~~~~~~~   99 (262)
T PF00398_consen   31 GDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERF--------ASNPNVEVINGDFLK-WDLYDLLKNQPL   99 (262)
T ss_dssp             TSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHC--------TTCSSEEEEES-TTT-SCGGGHCSSSEE
T ss_pred             CCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHh--------hhcccceeeecchhc-cccHHhhcCCce
Confidence            5689999999999999999996  78999999999877665433        246799999999874 43211 123445


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG  180 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg  180 (252)
                      .|+.|.|-  .         +...++..+...-+.|
T Consensus       100 ~vv~NlPy--~---------is~~il~~ll~~~~~g  124 (262)
T PF00398_consen  100 LVVGNLPY--N---------ISSPILRKLLELYRFG  124 (262)
T ss_dssp             EEEEEETG--T---------GHHHHHHHHHHHGGGC
T ss_pred             EEEEEecc--c---------chHHHHHHHhhccccc
Confidence            67777653  1         2345777666644443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.72  E-value=2.1e-05  Score=68.10  Aligned_cols=96  Identities=25%  Similarity=0.337  Sum_probs=64.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..+++|+|||+|.++.    .+|.+.++|.|++...+..|++          .+.+  ....+|+. .++  +.+.++|.
T Consensus        46 gsv~~d~gCGngky~~----~~p~~~~ig~D~c~~l~~~ak~----------~~~~--~~~~ad~l-~~p--~~~~s~d~  106 (293)
T KOG1331|consen   46 GSVGLDVGCGNGKYLG----VNPLCLIIGCDLCTGLLGGAKR----------SGGD--NVCRADAL-KLP--FREESFDA  106 (293)
T ss_pred             cceeeecccCCcccCc----CCCcceeeecchhhhhcccccc----------CCCc--eeehhhhh-cCC--CCCCcccc
Confidence            4589999999996553    4588999999999887655432          1222  56778876 344  66777777


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      +...---.|..     -+.-....++++.++|+|||...+
T Consensus       107 ~lsiavihhls-----T~~RR~~~l~e~~r~lrpgg~~lv  141 (293)
T KOG1331|consen  107 ALSIAVIHHLS-----TRERRERALEELLRVLRPGGNALV  141 (293)
T ss_pred             chhhhhhhhhh-----hHHHHHHHHHHHHHHhcCCCceEE
Confidence            64321111111     111124699999999999998666

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=97.70  E-value=0.00047  Score=62.75  Aligned_cols=116  Identities=15%  Similarity=0.194  Sum_probs=87.6

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++.+|||..+..|.=+.++|.... ...+++.|.+...+.....++..+      |..|..++..|..++-...|+. +|
T Consensus       241 ~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rl------Gv~ntiv~n~D~~ef~~~~~~~-~f  313 (460)
T KOG1122|consen  241 PGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRL------GVTNTIVSNYDGREFPEKEFPG-SF  313 (460)
T ss_pred             CCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHh------CCCceEEEccCcccccccccCc-cc
Confidence            467999999999999999998744 347899999999998888888766      8999999999987532344555 99


Q ss_pred             cEEEEeCCCCc---------ccccc-----ccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPH---------FKEKN-----HRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~---------~k~~h-----~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|.+.-|..-         .+...     ...--+|..+|......+++||+|+-+|
T Consensus       314 DRVLLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYST  371 (460)
T KOG1122|consen  314 DRVLLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYST  371 (460)
T ss_pred             ceeeecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEe
Confidence            99998765322         11100     0011245679999999999999999876

>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known

Probab=97.66  E-value=0.0002  Score=58.02  Aligned_cols=131  Identities=15%  Similarity=0.244  Sum_probs=83.7

Q ss_pred             EcCcccHHHHHHHHHCC-CCeEEEEecC--HhHHHH---HHHHHHHHhhcCCCCcccEEEE-eCCcccccCccC--CCCc
Q 025470           72 IGCGFGGLLISLSTLFP-EVLMIGMELR--DKVTEY---VKERILALRVSNPGQYQNISVV-RTNSMKYIPNYF--EKGQ  142 (252)
Q Consensus        72 IGcG~G~~~~~lA~~~p-~~~~iGiDis--~~~i~~---a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~--~~~s  142 (252)
                      ||=|.=.|+.+||+.+. ..++++.-..  ....+.   +..++..++      ..++.++ ..||. .+...+  ....
T Consensus         3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~------~~g~~V~~~VDat-~l~~~~~~~~~~   75 (166)
T PF10354_consen    3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELR------ELGVTVLHGVDAT-KLHKHFRLKNQR   75 (166)
T ss_pred             eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHh------hcCCccccCCCCC-cccccccccCCc
Confidence            56677778888888876 6677665444  333322   234555541      2234444 46776 465555  6788


Q ss_pred             ccEEEEeCCCCcccccc-----ccccccCHHHHHHHHHhhcCCcEEEEEe-CchHHHHHHHHHHhcCCCcccc
Q 025470          143 LTKMFFLFPDPHFKEKN-----HRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h-----~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~~~~~~~~~~~~~  209 (252)
                      +|.|+.|||-.-....+     ...|.+-..|+..+..+|+++|.|+++. +...|-.|-.+.+.+...|.-.
T Consensus        76 FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~  148 (166)
T PF10354_consen   76 FDRIIFNFPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLV  148 (166)
T ss_pred             CCEEEEeCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEE
Confidence            99999999865411111     1223344689999999999999999865 3456777877777766555444

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=97.63  E-value=0.00023  Score=61.95  Aligned_cols=108  Identities=17%  Similarity=0.253  Sum_probs=71.3

Q ss_pred             ceEEEEcCcccHHH----HHHHHHCC-----CCeEEEEecCHhHHHHHHHHHHH-Hhh---c-----------CCCC---
Q 025470           67 IQFADIGCGFGGLL----ISLSTLFP-----EVLMIGMELRDKVTEYVKERILA-LRV---S-----------NPGQ---  119 (252)
Q Consensus        67 ~~vLDIGcG~G~~~----~~lA~~~p-----~~~~iGiDis~~~i~~a~~~~~~-~~~---~-----------~~~~---  119 (252)
                      -.|.-+||++|+=.    +.+++..+     ...++|.|||..+++.|+.-+-. ...   .           ...+   
T Consensus        98 irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y~  177 (268)
T COG1352          98 IRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSYR  177 (268)
T ss_pred             eEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcEE
Confidence            37999999999733    34444454     57899999999999988653211 000   0           1111   


Q ss_pred             -----cccEEEEeCCcccccCccCCCCcccEEEE----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          120 -----YQNISVVRTNSMKYIPNYFEKGQLTKMFF----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       120 -----~~nv~~~~~da~~~l~~~~~~~s~d~i~~----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                           ..+|.|-+.|+..   +....+.+|.|++    .|=|..          ++..+++.++..|+|||.|++-.
T Consensus       178 v~~~ir~~V~F~~~NLl~---~~~~~~~fD~IfCRNVLIYFd~~----------~q~~il~~f~~~L~~gG~LflG~  241 (268)
T COG1352         178 VKEELRKMVRFRRHNLLD---DSPFLGKFDLIFCRNVLIYFDEE----------TQERILRRFADSLKPGGLLFLGH  241 (268)
T ss_pred             EChHHhcccEEeecCCCC---CccccCCCCEEEEcceEEeeCHH----------HHHHHHHHHHHHhCCCCEEEEcc
Confidence                 2357777777642   2224677999974    232433          23469999999999999999854

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.60  E-value=0.0016  Score=53.96  Aligned_cols=122  Identities=16%  Similarity=0.123  Sum_probs=86.3

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..||=+|.-+|+...+.+...++..++|||.|+.+.+..-..+.        .-+|+--+-.||..-.....--..+|
T Consensus        76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~--------~R~Ni~PIL~DA~~P~~Y~~~Ve~VD  147 (231)
T COG1889          76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAE--------KRPNIIPILEDARKPEKYRHLVEKVD  147 (231)
T ss_pred             CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHH--------hCCCceeeecccCCcHHhhhhccccc
Confidence            4679999999999999999999888889999999987654433221        35799999999963111111135689


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---------eCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---------TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---------td~~~~~~~~~~~~~~~~  204 (252)
                      .|+.....|-.          ..-+...+...||+||.+.++         .|..+.+..-.+.+.+..
T Consensus       148 viy~DVAQp~Q----------a~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp~~vf~~ev~kL~~~~  206 (231)
T COG1889         148 VIYQDVAQPNQ----------AEILADNAEFFLKKGGYVVIAIKARSIDVTADPEEVFKDEVEKLEEGG  206 (231)
T ss_pred             EEEEecCCchH----------HHHHHHHHHHhcccCCeEEEEEEeecccccCCHHHHHHHHHHHHHhcC
Confidence            99987655531          123777889999999955553         245566666666666554

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=97.56  E-value=0.00045  Score=54.19  Aligned_cols=93  Identities=15%  Similarity=0.254  Sum_probs=59.0

Q ss_pred             eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCC-CCccccccccccccCHHH
Q 025470           91 LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFP-DPHFKEKNHRRRVISPHL  169 (252)
Q Consensus        91 ~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fp-dP~~k~~h~krr~~~~~~  169 (252)
                      .|+|+||-+.+++.+++++.+.     ....++.++..+-. .+..+++++.+|.++.|+- -|--.+.-.-+.-.+-..
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~-----~~~~~v~li~~sHe-~l~~~i~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~A   74 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEA-----GLEDRVTLILDSHE-NLDEYIPEGPVDAAIFNLGYLPGGDKSITTKPETTLKA   74 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHT-----T-GSGEEEEES-GG-GGGGT--S--EEEEEEEESB-CTS-TTSB--HHHHHHH
T ss_pred             CEEEEECHHHHHHHHHHHHHhc-----CCCCcEEEEECCHH-HHHhhCccCCcCEEEEECCcCCCCCCCCCcCcHHHHHH
Confidence            4899999999999999988764     22347999998865 5777777779999998851 111111111111223457


Q ss_pred             HHHHHHhhcCCcEEEEEeCc
Q 025470          170 LDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       170 l~~~~~~LkpgG~l~~~td~  189 (252)
                      ++.+..+|+|||.+.++.-.
T Consensus        75 l~~al~lL~~gG~i~iv~Y~   94 (140)
T PF06962_consen   75 LEAALELLKPGGIITIVVYP   94 (140)
T ss_dssp             HHHHHHHEEEEEEEEEEE--
T ss_pred             HHHHHHhhccCCEEEEEEeC
Confidence            88899999999999998754

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.52  E-value=0.00047  Score=61.05  Aligned_cols=77  Identities=14%  Similarity=0.235  Sum_probs=61.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC---CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF---EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~---~~~s  142 (252)
                      +.++||.=||.|.++..+++..++..++|+|.++.+++.|++++...       ..++.+++++..+ +...+   ...+
T Consensus        21 ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~-------~~R~~~i~~nF~~-l~~~l~~~~~~~   92 (305)
T TIGR00006        21 DGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF-------EGRVVLIHDNFAN-FFEHLDELLVTK   92 (305)
T ss_pred             CCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc-------CCcEEEEeCCHHH-HHHHHHhcCCCc
Confidence            45899999999999999999987789999999999999988766432       3579999999764 33333   3357


Q ss_pred             ccEEEEeC
Q 025470          143 LTKMFFLF  150 (252)
Q Consensus       143 ~d~i~~~f  150 (252)
                      +|.|+++.
T Consensus        93 vDgIl~DL  100 (305)
T TIGR00006        93 IDGILVDL  100 (305)
T ss_pred             ccEEEEec
Confidence            89998653

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=97.52  E-value=0.00035  Score=62.30  Aligned_cols=148  Identities=15%  Similarity=0.172  Sum_probs=92.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      -...||+|-|.|..+-.+...+|.  +-||+.+.+.+..++..+         + +.|..+-+|...   + .|++  |.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~fp~--ik~infdlp~v~~~a~~~---------~-~gV~~v~gdmfq---~-~P~~--da  239 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKYPH--IKGINFDLPFVLAAAPYL---------A-PGVEHVAGDMFQ---D-TPKG--DA  239 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhCCC--CceeecCHHHHHhhhhhh---------c-CCcceecccccc---c-CCCc--Ce
Confidence            468999999999999999998886  678888887765544322         2 458888888643   3 4544  47


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccccccc--c--cc-cCcc
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKE--E--LE-ADPV  219 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~--~--~~-~~p~  219 (252)
                      |++.+-- .|..+.       .-.||+.+...|+|||.|+++-..-+-     +.-. ......++..  .  +. ..-+
T Consensus       240 I~mkWiLhdwtDed-------cvkiLknC~~sL~~~GkIiv~E~V~p~-----e~~~-dd~~s~v~~~~d~lm~~~~~~G  306 (342)
T KOG3178|consen  240 IWMKWILHDWTDED-------CVKILKNCKKSLPPGGKIIVVENVTPE-----EDKF-DDIDSSVTRDMDLLMLTQTSGG  306 (342)
T ss_pred             EEEEeecccCChHH-------HHHHHHHHHHhCCCCCEEEEEeccCCC-----CCCc-cccccceeehhHHHHHHHhccc
Confidence            7765432 232221       225999999999999999986532110     0000 0001111110  0  01 1112


Q ss_pred             ccCCCCCCHHHHHHHHcCCCeEEEEEE
Q 025470          220 VKLLSSATEEGQKVARNGGQTFQAVFR  246 (252)
Q Consensus       220 ~~~~~~~t~~e~~~~~~G~~i~~~~~~  246 (252)
                      .  .+...+|+.....+|+.+|.+.+.
T Consensus       307 k--ert~~e~q~l~~~~gF~~~~~~~~  331 (342)
T KOG3178|consen  307 K--ERTLKEFQALLPEEGFPVCMVALT  331 (342)
T ss_pred             e--eccHHHHHhcchhhcCceeEEEec
Confidence            1  256678999999999999988765

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=97.50  E-value=0.00023  Score=64.62  Aligned_cols=100  Identities=21%  Similarity=0.266  Sum_probs=73.8

Q ss_pred             CCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCC
Q 025470           63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        63 ~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~  141 (252)
                      +.+...++|+|||.|.....++.-. .+.++|++.++..+..+.......      .+.| ..++.+|..   ...++++
T Consensus       108 ~~~~~~~~~~~~g~~~~~~~i~~f~-~~~~~Gl~~n~~e~~~~~~~~~~~------~l~~k~~~~~~~~~---~~~fedn  177 (364)
T KOG1269|consen  108 CFPGSKVLDVGTGVGGPSRYIAVFK-KAGVVGLDNNAYEAFRANELAKKA------YLDNKCNFVVADFG---KMPFEDN  177 (364)
T ss_pred             CcccccccccCcCcCchhHHHHHhc-cCCccCCCcCHHHHHHHHHHHHHH------Hhhhhcceehhhhh---cCCCCcc
Confidence            3344579999999999999988874 578999999998776666544332      3333 223556654   3448899


Q ss_pred             cccEEEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          142 QLTKMFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       142 s~d~i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ++|.+..+     -|+++             .+++++.++|+|||.+..
T Consensus       178 ~fd~v~~ld~~~~~~~~~-------------~~y~Ei~rv~kpGG~~i~  213 (364)
T KOG1269|consen  178 TFDGVRFLEVVCHAPDLE-------------KVYAEIYRVLKPGGLFIV  213 (364)
T ss_pred             ccCcEEEEeecccCCcHH-------------HHHHHHhcccCCCceEEe
Confidence            99999864     45655             699999999999999976

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=97.50  E-value=0.00048  Score=60.76  Aligned_cols=82  Identities=15%  Similarity=0.165  Sum_probs=46.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc-ccCccC-CCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK-YIPNYF-EKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~-~l~~~~-~~~s~  143 (252)
                      .-.+||||||...+-.-|+.+..+++|+|.||++..++.|++++...    ..-..+|.++...-.. .+.... +...+
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N----~~L~~~I~l~~~~~~~~i~~~i~~~~e~~  178 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERN----PNLESRIELRKQKNPDNIFDGIIQPNERF  178 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-----T-TTTEEEEE--ST-SSTTTSTT--S-E
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhc----cccccceEEEEcCCccccchhhhccccee
Confidence            45899999999876555555545899999999999999999998653    1123457777653221 232222 23567


Q ss_pred             cEEEEeCC
Q 025470          144 TKMFFLFP  151 (252)
Q Consensus       144 d~i~~~fp  151 (252)
                      |..++|.|
T Consensus       179 dftmCNPP  186 (299)
T PF05971_consen  179 DFTMCNPP  186 (299)
T ss_dssp             EEEEE---
T ss_pred             eEEecCCc
Confidence            77777654

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.49  E-value=7.5e-05  Score=62.43  Aligned_cols=60  Identities=15%  Similarity=0.227  Sum_probs=50.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMK  132 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~  132 (252)
                      ..++|+|.-||.|.-++..|.++|  .|++||+++.-|..|++|++-      .|++ .|.|+++|..+
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~--~VisIdiDPikIa~AkhNaei------YGI~~rItFI~GD~ld  154 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP--YVIAIDIDPVKIACARHNAEV------YGVPDRITFICGDFLD  154 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC--eEEEEeccHHHHHHHhcccee------ecCCceeEEEechHHH
Confidence            467999999999999999999965  689999999999988887643      3553 69999999864

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.47  E-value=2.3e-05  Score=65.18  Aligned_cols=109  Identities=18%  Similarity=0.286  Sum_probs=62.4

Q ss_pred             CceEEEEcCcccHHHHHHHHH--------CC-CCeEEEEecCHhHHHHHHHHHHHHhhc---------------CCCC--
Q 025470           66 KIQFADIGCGFGGLLISLSTL--------FP-EVLMIGMELRDKVTEYVKERILALRVS---------------NPGQ--  119 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~--------~p-~~~~iGiDis~~~i~~a~~~~~~~~~~---------------~~~~--  119 (252)
                      .-.|.-.||++|+=.-.||-.        .+ ...++|.|+|+.+++.|++-+-.....               ....  
T Consensus        32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~  111 (196)
T PF01739_consen   32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR  111 (196)
T ss_dssp             -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred             CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence            348999999999754443332        12 468999999999999886531100000               1001  


Q ss_pred             -----cccEEEEeCCcccccCccCCCCcccEEEEe----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          120 -----YQNISVVRTNSMKYIPNYFEKGQLTKMFFL----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       120 -----~~nv~~~~~da~~~l~~~~~~~s~d~i~~~----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                           -.+|.|.+.|+.+   ...+.+.+|.|++-    |=++.          .+..+++.+++.|+|||.|++-.
T Consensus       112 v~~~lr~~V~F~~~NL~~---~~~~~~~fD~I~CRNVlIYF~~~----------~~~~vl~~l~~~L~pgG~L~lG~  175 (196)
T PF01739_consen  112 VKPELRKMVRFRRHNLLD---PDPPFGRFDLIFCRNVLIYFDPE----------TQQRVLRRLHRSLKPGGYLFLGH  175 (196)
T ss_dssp             E-HHHHTTEEEEE--TT----S------EEEEEE-SSGGGS-HH----------HHHHHHHHHGGGEEEEEEEEE-T
T ss_pred             EChHHcCceEEEecccCC---CCcccCCccEEEecCEEEEeCHH----------HHHHHHHHHHHHcCCCCEEEEec
Confidence                 2368899988764   22346789999752    21222          12469999999999999999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.44  E-value=0.00075  Score=56.56  Aligned_cols=115  Identities=18%  Similarity=0.154  Sum_probs=74.9

Q ss_pred             EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc-ccEEE
Q 025470           69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ-LTKMF  147 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s-~d~i~  147 (252)
                      |.||||--|.+.+.|.++..-..++++|+++..++.|++++...     +-...+.+..+|-...    +.++. +|.|+
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~-----~l~~~i~~rlgdGL~~----l~~~e~~d~iv   71 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY-----GLEDRIEVRLGDGLEV----LKPGEDVDTIV   71 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT-----T-TTTEEEEE-SGGGG------GGG---EEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc-----CCcccEEEEECCcccc----cCCCCCCCEEE
Confidence            68999999999999999987778999999999999999998764     2235699999997543    34555 88888


Q ss_pred             EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      +----         .. +-..+|+.....++....|+++....  ...+...+.+++
T Consensus        72 IAGMG---------G~-lI~~ILe~~~~~~~~~~~lILqP~~~--~~~LR~~L~~~g  116 (205)
T PF04816_consen   72 IAGMG---------GE-LIIEILEAGPEKLSSAKRLILQPNTH--AYELRRWLYENG  116 (205)
T ss_dssp             EEEE----------HH-HHHHHHHHTGGGGTT--EEEEEESS---HHHHHHHHHHTT
T ss_pred             EecCC---------HH-HHHHHHHhhHHHhccCCeEEEeCCCC--hHHHHHHHHHCC
Confidence            74210         00 11246666666666666788876543  334555555554

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.37  E-value=0.0011  Score=59.41  Aligned_cols=86  Identities=13%  Similarity=0.212  Sum_probs=63.1

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..+|||||++|.++-.++++  +..|+|||..+ |   +. .+        ...++|..+..|.....+.   ...+|
T Consensus       211 ~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~-l---~~-~L--------~~~~~V~h~~~d~fr~~p~---~~~vD  272 (357)
T PRK11760        211 PGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGP-M---AQ-SL--------MDTGQVEHLRADGFKFRPP---RKNVD  272 (357)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechh-c---CH-hh--------hCCCCEEEEeccCcccCCC---CCCCC
Confidence            3569999999999999999999  56999999654 1   11 11        1457899999998653331   56789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG  180 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg  180 (252)
                      .+++..-....            ...+.+.++|..|
T Consensus       273 wvVcDmve~P~------------rva~lm~~Wl~~g  296 (357)
T PRK11760        273 WLVCDMVEKPA------------RVAELMAQWLVNG  296 (357)
T ss_pred             EEEEecccCHH------------HHHHHHHHHHhcC
Confidence            99876644332            4778888888776

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.34  E-value=0.0008  Score=57.59  Aligned_cols=83  Identities=17%  Similarity=0.264  Sum_probs=57.6

Q ss_pred             ccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE
Q 025470           47 YSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV  126 (252)
Q Consensus        47 w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~  126 (252)
                      +..+|+...+         ...|+|||||---+++......|+..|+|+||+..+++....-+..+      + .+..+.
T Consensus        96 Y~~if~~~~~---------p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l------~-~~~~~~  159 (251)
T PF07091_consen   96 YDEIFGRIPP---------PDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVL------G-VPHDAR  159 (251)
T ss_dssp             HHHHCCCS------------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHT------T--CEEEE
T ss_pred             HHHHHhcCCC---------CchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhh------C-CCccee
Confidence            4677776532         34899999999999988888888899999999999999887655543      2 456666


Q ss_pred             eCCcccccCccCCCCcccEEEEe
Q 025470          127 RTNSMKYIPNYFEKGQLTKMFFL  149 (252)
Q Consensus       127 ~~da~~~l~~~~~~~s~d~i~~~  149 (252)
                      ..|...    ..+....|...+.
T Consensus       160 v~Dl~~----~~~~~~~DlaLll  178 (251)
T PF07091_consen  160 VRDLLS----DPPKEPADLALLL  178 (251)
T ss_dssp             EE-TTT----SHTTSEESEEEEE
T ss_pred             Eeeeec----cCCCCCcchhhHH
Confidence            667542    1346678887765

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=97.19  E-value=0.0041  Score=54.38  Aligned_cols=106  Identities=13%  Similarity=0.164  Sum_probs=62.9

Q ss_pred             ceEEEEcCcc-cHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGF-GGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ..|+=||||. -..++.+|+. .++..|+++|+++.+++.+++.+...     .++ ..+.|+.+|+.+ +.  .+-..+
T Consensus       122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~-----~~L~~~m~f~~~d~~~-~~--~dl~~~  193 (276)
T PF03059_consen  122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASD-----LGLSKRMSFITADVLD-VT--YDLKEY  193 (276)
T ss_dssp             -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------HH-SSEEEEES-GGG-G---GG----
T ss_pred             ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhc-----ccccCCeEEEecchhc-cc--cccccC
Confidence            3899999996 5566777765 46788999999999999998766521     133 458999999864 32  223578


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|++----...+.  .|     .++|+.+.+.++||..+.+.+
T Consensus       194 DvV~lAalVg~~~e--~K-----~~Il~~l~~~m~~ga~l~~Rs  230 (276)
T PF03059_consen  194 DVVFLAALVGMDAE--PK-----EEILEHLAKHMAPGARLVVRS  230 (276)
T ss_dssp             SEEEE-TT-S------SH-----HHHHHHHHHHS-TTSEEEEEE
T ss_pred             CEEEEhhhcccccc--hH-----HHHHHHHHhhCCCCcEEEEec
Confidence            99987542221111  11     259999999999999999987

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=97.18  E-value=0.0033  Score=54.72  Aligned_cols=108  Identities=17%  Similarity=0.122  Sum_probs=67.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------------------------------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------------------------------  115 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------------------------------  115 (252)
                      ...||=-|||-|.++..+|.+  +..+.|.|.|--|+-...-.+......                              
T Consensus        57 ~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv  134 (270)
T PF07942_consen   57 KIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDV  134 (270)
T ss_pred             ccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCc
Confidence            568999999999999999999  778999999999863222111110000                              


Q ss_pred             ----CCCCcccEEEEeCCcccccCccCCCCcccEEEEeC-CCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          116 ----NPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       116 ----~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                          ......|+....+|..+.-...-..+++|.|+..| -|=-..         --++|+.+.++|||||..+
T Consensus       135 ~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA~N---------i~~Yi~tI~~lLkpgG~WI  199 (270)
T PF07942_consen  135 DPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTAEN---------IIEYIETIEHLLKPGGYWI  199 (270)
T ss_pred             CcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeechHH---------HHHHHHHHHHHhccCCEEE
Confidence                00112356666666554221111136888887543 221100         1259999999999999553

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=97.06  E-value=0.008  Score=54.12  Aligned_cols=133  Identities=15%  Similarity=0.195  Sum_probs=88.3

Q ss_pred             CCCCceEEEEcCcccHHHHHHHHHCC----CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC
Q 025470           63 CSKKIQFADIGCGFGGLLISLSTLFP----EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF  138 (252)
Q Consensus        63 ~~~~~~vLDIGcG~G~~~~~lA~~~p----~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~  138 (252)
                      .++...|||++...|.=++.|.+..-    ...+++=|++...+......+..      ...+|+.+...|+. ..+...
T Consensus       153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~------l~~~~~~v~~~~~~-~~p~~~  225 (375)
T KOG2198|consen  153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKR------LPSPNLLVTNHDAS-LFPNIY  225 (375)
T ss_pred             cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhc------cCCcceeeecccce-eccccc
Confidence            34567999999999999988888732    23799999999877666554422      35667888887775 344332


Q ss_pred             -------CCCcccEEEEeCC---CCcccc--------ccccc----cccCHHHHHHHHHhhcCCcEEEEEe------Cch
Q 025470          139 -------EKGQLTKMFFLFP---DPHFKE--------KNHRR----RVISPHLLDEYAYVLGVGGIIYTIT------DVE  190 (252)
Q Consensus       139 -------~~~s~d~i~~~fp---dP~~k~--------~h~kr----r~~~~~~l~~~~~~LkpgG~l~~~t------d~~  190 (252)
                             ....||.|.+.-|   |.+..+        +...+    -.+|-.+|..-.++||+||.++-+|      -++
T Consensus       226 ~~~~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNE  305 (375)
T KOG2198|consen  226 LKDGNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENE  305 (375)
T ss_pred             cccCchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhH
Confidence                   2345899988665   222111        11111    2356679999999999999999987      245


Q ss_pred             HHHHHHHHHHhc
Q 025470          191 ELGDWMRSCLEN  202 (252)
Q Consensus       191 ~~~~~~~~~~~~  202 (252)
                      .+...+++....
T Consensus       306 aVV~~~L~~~~~  317 (375)
T KOG2198|consen  306 AVVQEALQKVGG  317 (375)
T ss_pred             HHHHHHHHHhcC
Confidence            555555555543

>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]

Probab=97.03  E-value=0.0048  Score=53.95  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=100.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||=||=|.|.++...++.-.-.+++-+|++...++....-+..+  +....-+.|.++-+|...++. ..+.+.+|.|
T Consensus       123 kkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~l--a~gy~~~~v~l~iGDG~~fl~-~~~~~~~dVi  199 (337)
T KOG1562|consen  123 KKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTL--ACGYEGKKVKLLIGDGFLFLE-DLKENPFDVI  199 (337)
T ss_pred             CeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHH--hcccCCCceEEEeccHHHHHH-HhccCCceEE
Confidence            4899999999999998888733457889999999888776555443  123445679999999876554 4568899999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      ++--.||.-....    +....+++.+.+.||+||++.++.++-++.....+.....
T Consensus       200 i~dssdpvgpa~~----lf~~~~~~~v~~aLk~dgv~~~q~ec~wl~~~~i~e~r~~  252 (337)
T KOG1562|consen  200 ITDSSDPVGPACA----LFQKPYFGLVLDALKGDGVVCTQGECMWLHLDYIKEGRSF  252 (337)
T ss_pred             EEecCCccchHHH----HHHHHHHHHHHHhhCCCcEEEEecceehHHHHHHHHHHHh
Confidence            9999998754322    2345799999999999999999999888777777666554

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.01  E-value=0.0049  Score=55.49  Aligned_cols=105  Identities=17%  Similarity=0.171  Sum_probs=83.0

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||-=||+|.=++.+|..-+...++.-|+|+++++.+++|+...      ...+...+..||...+...  ...||.|
T Consensus        54 ~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N------~~~~~~v~n~DAN~lm~~~--~~~fd~I  125 (380)
T COG1867          54 KRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLN------SGEDAEVINKDANALLHEL--HRAFDVI  125 (380)
T ss_pred             eEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhc------CcccceeecchHHHHHHhc--CCCccEE
Confidence            3799999999999999999988778999999999999999988542      4556777788987555421  3678888


Q ss_pred             EEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEEE-EeCchHH
Q 025470          147 FFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT-ITDVEEL  192 (252)
Q Consensus       147 ~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~-~td~~~~  192 (252)
                      -+. |-.|-             .|+....+.++.||.+.+ +||...+
T Consensus       126 DiDPFGSPa-------------PFlDaA~~s~~~~G~l~vTATD~a~L  160 (380)
T COG1867         126 DIDPFGSPA-------------PFLDAALRSVRRGGLLCVTATDTAPL  160 (380)
T ss_pred             ecCCCCCCc-------------hHHHHHHHHhhcCCEEEEEecccccc
Confidence            874 33444             499999999999999877 4775443

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.99  E-value=0.0039  Score=57.01  Aligned_cols=105  Identities=16%  Similarity=0.176  Sum_probs=76.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~l~~~~~~~s~  143 (252)
                      -.+||.=+|+|.=++.+|...+ ...++.-|+++++++.++.|+...      ++..  +.+.+.||...+.  .....+
T Consensus        51 ~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N------~~~~~~~~v~~~DAn~ll~--~~~~~f  122 (377)
T PF02005_consen   51 IRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN------GLEDERIEVSNMDANVLLY--SRQERF  122 (377)
T ss_dssp             EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC------T-SGCCEEEEES-HHHHHC--HSTT-E
T ss_pred             ceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc------cccCceEEEehhhHHHHhh--hccccC
Confidence            4799999999999999999954 457899999999999999987653      5544  8999999986553  246789


Q ss_pred             cEEEEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCchHH
Q 025470          144 TKMFFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDVEEL  192 (252)
Q Consensus       144 d~i~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~~~~  192 (252)
                      |.|-+. |-.|-             .||..+.+.++.||.|.++ ||...+
T Consensus       123 D~IDlDPfGSp~-------------pfldsA~~~v~~gGll~vTaTD~a~L  160 (377)
T PF02005_consen  123 DVIDLDPFGSPA-------------PFLDSALQAVKDGGLLCVTATDTAVL  160 (377)
T ss_dssp             EEEEE--SS--H-------------HHHHHHHHHEEEEEEEEEEE--HHHH
T ss_pred             CEEEeCCCCCcc-------------HhHHHHHHHhhcCCEEEEeccccccc
Confidence            999983 22332             5999999999999999885 665443

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=96.99  E-value=0.007  Score=59.38  Aligned_cols=122  Identities=18%  Similarity=0.249  Sum_probs=75.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-------C-----CCeEEEEecCH---hHHHHHHHH-------HHHHhhc---CCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-------P-----EVLMIGMELRD---KVTEYVKER-------ILALRVS---NPGQY  120 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-------p-----~~~~iGiDis~---~~i~~a~~~-------~~~~~~~---~~~~~  120 (252)
                      .-+|+|+|+|+|...+...+..       |     ..+|+++|..+   +-+..+...       ...+...   ...++
T Consensus        58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~  137 (662)
T PRK01747         58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC  137 (662)
T ss_pred             cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence            3489999999999776666433       3     35899999765   222222111       0011000   00121


Q ss_pred             ---------ccEEEEeCCcccccCccCCCCcccEEEEeC------CCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          121 ---------QNISVVRTNSMKYIPNYFEKGQLTKMFFLF------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       121 ---------~nv~~~~~da~~~l~~~~~~~s~d~i~~~f------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                               =++.++.+|+.+.+...  ...+|.+|+.-      |+-|           +.+++..+++.++|||++.-
T Consensus       138 ~~~~~~~~~~~l~l~~gd~~~~~~~~--~~~~d~~~lD~FsP~~np~~W-----------~~~~~~~l~~~~~~~~~~~t  204 (662)
T PRK01747        138 HRLLFDDGRVTLDLWFGDANELLPQL--DARADAWFLDGFAPAKNPDMW-----------SPNLFNALARLARPGATLAT  204 (662)
T ss_pred             eEEEecCCcEEEEEEecCHHHHHHhc--cccccEEEeCCCCCccChhhc-----------cHHHHHHHHHHhCCCCEEEE
Confidence                     15678889988766543  25689999752      2335           45899999999999999986


Q ss_pred             EeCchHHHHHHHHHHhcCC
Q 025470          186 ITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       186 ~td~~~~~~~~~~~~~~~~  204 (252)
                      -|-    +..+...+...+
T Consensus       205 ~t~----a~~vr~~l~~~G  219 (662)
T PRK01747        205 FTS----AGFVRRGLQEAG  219 (662)
T ss_pred             eeh----HHHHHHHHHHcC
Confidence            552    344455555544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=96.98  E-value=0.0084  Score=52.50  Aligned_cols=43  Identities=19%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             eEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHH
Q 025470           68 QFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERIL  110 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~  110 (252)
                      .|||+|||.|..+.+....++ -..++++|.|+.|++.++..+.
T Consensus        36 ~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~   79 (274)
T PF09243_consen   36 SVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLR   79 (274)
T ss_pred             eEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHh
Confidence            799999999998888888776 3478999999999998877553

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=96.89  E-value=0.0073  Score=49.55  Aligned_cols=105  Identities=12%  Similarity=0.082  Sum_probs=63.7

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-Cccc-----ccCccC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMK-----YIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~-----~l~~~~  138 (252)
                      ..+|||+||..|.++.-.-++ +|...++|||+-.         +        .....+.++++ |+.+     .+.+.+
T Consensus        70 ~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~--------~p~~Ga~~i~~~dvtdp~~~~ki~e~l  132 (232)
T KOG4589|consen   70 EDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------I--------EPPEGATIIQGNDVTDPETYRKIFEAL  132 (232)
T ss_pred             CCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------c--------cCCCCcccccccccCCHHHHHHHHHhC
Confidence            459999999999999887777 5999999999843         1        13344566665 4432     122335


Q ss_pred             CCCcccEEEEeC-CCCccc--cccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          139 EKGQLTKMFFLF-PDPHFK--EKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       139 ~~~s~d~i~~~f-pdP~~k--~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +.-.+|.|.... |++---  ..|..---+....+.-....|+|+|.++..+
T Consensus       133 p~r~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~  184 (232)
T KOG4589|consen  133 PNRPVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKL  184 (232)
T ss_pred             CCCcccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEE
Confidence            667788887643 433211  1121100011223333446678999999876

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=96.83  E-value=0.0067  Score=52.63  Aligned_cols=104  Identities=13%  Similarity=0.223  Sum_probs=58.1

Q ss_pred             ceEEEEcCccc--HHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccc---cC---
Q 025470           67 IQFADIGCGFG--GLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKY---IP---  135 (252)
Q Consensus        67 ~~vLDIGcG~G--~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~---l~---  135 (252)
                      ..+||||||-=  ..+-..|++ .|+++|+=||.++..+..++..+.        +.++  ..++++|+.+.   |.   
T Consensus        70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~--------~~~~g~t~~v~aD~r~p~~iL~~p~  141 (267)
T PF04672_consen   70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLA--------DNPRGRTAYVQADLRDPEAILAHPE  141 (267)
T ss_dssp             -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHT--------T-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred             ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhc--------CCCCccEEEEeCCCCCHHHHhcCHH
Confidence            37999999953  345566665 899999999999998888776553        3345  89999998641   11   


Q ss_pred             --ccCC-CCcccEEEE----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          136 --NYFE-KGQLTKMFF----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       136 --~~~~-~~s~d~i~~----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                        ..++ +.-+-.+++    +.+|.-.          -..+++.+...|.||..|.|+.-
T Consensus       142 ~~~~lD~~rPVavll~~vLh~v~D~~d----------p~~iv~~l~d~lapGS~L~ish~  191 (267)
T PF04672_consen  142 VRGLLDFDRPVAVLLVAVLHFVPDDDD----------PAGIVARLRDALAPGSYLAISHA  191 (267)
T ss_dssp             HHCC--TTS--EEEECT-GGGS-CGCT----------HHHHHHHHHCCS-TT-EEEEEEE
T ss_pred             HHhcCCCCCCeeeeeeeeeccCCCccC----------HHHHHHHHHHhCCCCceEEEEec
Confidence              1121 122222221    2233110          12699999999999999999753

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.67  E-value=0.01  Score=55.17  Aligned_cols=103  Identities=20%  Similarity=0.242  Sum_probs=74.2

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      ++|.+|||+-.+...+-+.. ...++-+|+|+..++.......       ...+-..+...|+.. +  .|++.++|.|.
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G-~~dI~~iD~S~V~V~~m~~~~~-------~~~~~~~~~~~d~~~-l--~fedESFdiVI  119 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNG-FEDITNIDSSSVVVAAMQVRNA-------KERPEMQMVEMDMDQ-L--VFEDESFDIVI  119 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcC-CCCceeccccHHHHHHHHhccc-------cCCcceEEEEecchh-c--cCCCcceeEEE
Confidence            79999999998888887773 4568999999988876554321       244568888888753 3  47788888776


Q ss_pred             E------eC---CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          148 F------LF---PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       148 ~------~f---pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .      .+   .++|.+  ++     -...+.+++++|++||++...|-
T Consensus       120 dkGtlDal~~de~a~~~~--~~-----v~~~~~eVsrvl~~~gk~~svtl  162 (482)
T KOG2352|consen  120 DKGTLDALFEDEDALLNT--AH-----VSNMLDEVSRVLAPGGKYISVTL  162 (482)
T ss_pred             ecCccccccCCchhhhhh--HH-----hhHHHhhHHHHhccCCEEEEEEe
Confidence            3      22   344533  11     23588999999999999888774

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.67  E-value=0.0013  Score=58.28  Aligned_cols=76  Identities=18%  Similarity=0.269  Sum_probs=53.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC----CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE----KG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~----~~  141 (252)
                      ..++||.=.|.|.++.++.++.|+..++|+|.++.+++.|.+++.       ...+++.+++++..+ +...+.    ..
T Consensus        21 ~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~-------~~~~r~~~~~~~F~~-l~~~l~~~~~~~   92 (310)
T PF01795_consen   21 GGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK-------KFDDRFIFIHGNFSN-LDEYLKELNGIN   92 (310)
T ss_dssp             T-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC-------CCCTTEEEEES-GGG-HHHHHHHTTTTS
T ss_pred             CceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh-------hccceEEEEeccHHH-HHHHHHHccCCC
Confidence            559999999999999999999999999999999999988775442       124689999998764 433332    34


Q ss_pred             cccEEEEe
Q 025470          142 QLTKMFFL  149 (252)
Q Consensus       142 s~d~i~~~  149 (252)
                      .+|.|.+.
T Consensus        93 ~~dgiL~D  100 (310)
T PF01795_consen   93 KVDGILFD  100 (310)
T ss_dssp             -EEEEEEE
T ss_pred             ccCEEEEc
Confidence            78888764

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.59  E-value=0.01  Score=50.53  Aligned_cols=80  Identities=14%  Similarity=0.282  Sum_probs=50.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCC---CcccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPG---QYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~---~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      .+.|||.=||-|.=++-+|..  +++|+|+|.|+.+......-+.........   -..++.++++|+.+.|.  .++.+
T Consensus        76 ~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~--~~~~s  151 (234)
T PF04445_consen   76 RPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR--QPDNS  151 (234)
T ss_dssp             ---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC--CHSS-
T ss_pred             CCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh--hcCCC
Confidence            358999999999999999976  679999999997665555444433221111   13589999999988776  56789


Q ss_pred             ccEEEEe
Q 025470          143 LTKMFFL  149 (252)
Q Consensus       143 ~d~i~~~  149 (252)
                      +|.||+.
T Consensus       152 ~DVVY~D  158 (234)
T PF04445_consen  152 FDVVYFD  158 (234)
T ss_dssp             -SEEEE-
T ss_pred             CCEEEEC
Confidence            9999984

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.54  E-value=0.002  Score=47.97  Aligned_cols=33  Identities=30%  Similarity=0.479  Sum_probs=25.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHh
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDK  100 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~  100 (252)
                      .+-.+|||||+|.+.--|.+.  +..=.|+|....
T Consensus        59 ~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~R~R   91 (112)
T PF07757_consen   59 FQGFVDLGCGNGLLVYILNSE--GYPGWGIDARRR   91 (112)
T ss_pred             CCceEEccCCchHHHHHHHhC--CCCccccccccc
Confidence            457999999999888777776  445589998653

; GO: 0008168 methyltransferase activity

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.49  E-value=0.00051  Score=57.09  Aligned_cols=94  Identities=21%  Similarity=0.359  Sum_probs=56.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...+||+|.|.|+++..++..+.  .+++.|.|..|+...+.+       .-+-+.-+...+.|..  ++....-+-+|.
T Consensus       113 ~~~lLDlGAGdGeit~~m~p~fe--evyATElS~tMr~rL~kk-------~ynVl~~~ew~~t~~k--~dli~clNlLDR  181 (288)
T KOG3987|consen  113 PVTLLDLGAGDGEITLRMAPTFE--EVYATELSWTMRDRLKKK-------NYNVLTEIEWLQTDVK--LDLILCLNLLDR  181 (288)
T ss_pred             CeeEEeccCCCcchhhhhcchHH--HHHHHHhhHHHHHHHhhc-------CCceeeehhhhhcCce--eehHHHHHHHHh
Confidence            34899999999999999999865  478999999987654331       0011122222222221  111111122222


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcC-CcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV-GGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp-gG~l~~~t  187 (252)
                      .+    +|.             .+|+.+..+|.| +|+++++-
T Consensus       182 c~----~p~-------------kLL~Di~~vl~psngrvivaL  207 (288)
T KOG3987|consen  182 CF----DPF-------------KLLEDIHLVLAPSNGRVIVAL  207 (288)
T ss_pred             hc----ChH-------------HHHHHHHHHhccCCCcEEEEE
Confidence            22    332             499999999999 78887653

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.48  E-value=0.03  Score=53.06  Aligned_cols=116  Identities=16%  Similarity=0.263  Sum_probs=78.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC----CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccC--
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP----EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYF--  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p----~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~--  138 (252)
                      ...|.|..||+|.++...++...    +..++|.|+++.....|.-+.--.      +.. ++....+|..  .....  
T Consensus       187 ~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lh------gi~~~~~i~~~dtl--~~~~~~~  258 (489)
T COG0286         187 RNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILH------GIEGDANIRHGDTL--SNPKHDD  258 (489)
T ss_pred             CCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHh------CCCccccccccccc--cCCcccc
Confidence            44899999999999988877642    377999999999988887765432      444 4666666653  22222  


Q ss_pred             --CCCcccEEEEeCCCC---ccccc----ccc-----ccc----cC-HHHHHHHHHhhcCCcEEEEEeCc
Q 025470          139 --EKGQLTKMFFLFPDP---HFKEK----NHR-----RRV----IS-PHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       139 --~~~s~d~i~~~fpdP---~~k~~----h~k-----rr~----~~-~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                        ..+.+|.|..|.|.-   |....    ...     ...    -. -.|++.+...|+|||+..++.+.
T Consensus       259 ~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~~  328 (489)
T COG0286         259 KDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLPD  328 (489)
T ss_pred             cCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEecC
Confidence              346689999887753   33221    000     000    11 46999999999999887776654

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=96.30  E-value=0.021  Score=47.96  Aligned_cols=116  Identities=15%  Similarity=0.064  Sum_probs=80.2

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .+.||||--|.+...|-+.++...+++.|+++..++.|.+++.+.     ...+.+.+..+|..   ...-.++.+|.|+
T Consensus        19 ~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~-----~l~~~i~vr~~dgl---~~l~~~d~~d~iv   90 (226)
T COG2384          19 RIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN-----NLSERIDVRLGDGL---AVLELEDEIDVIV   90 (226)
T ss_pred             ceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc-----CCcceEEEeccCCc---cccCccCCcCEEE
Confidence            499999999999999999999999999999999999998888654     34567888888863   2223355889988


Q ss_pred             EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      +----.         . .-..+|++-...|+.--+++++-.+..  .+..+.+..+
T Consensus        91 IAGMGG---------~-lI~~ILee~~~~l~~~~rlILQPn~~~--~~LR~~L~~~  134 (226)
T COG2384          91 IAGMGG---------T-LIREILEEGKEKLKGVERLILQPNIHT--YELREWLSAN  134 (226)
T ss_pred             EeCCcH---------H-HHHHHHHHhhhhhcCcceEEECCCCCH--HHHHHHHHhC
Confidence            753211         1 112466666666655456777655432  2334444443

>PRK11524 putative methyltransferase; Provisional

Probab=96.26  E-value=0.011  Score=52.04  Aligned_cols=46  Identities=13%  Similarity=-0.046  Sum_probs=40.1

Q ss_pred             CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHH
Q 025470           64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILA  111 (252)
Q Consensus        64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~  111 (252)
                      .++++|||-=||+|..+++..+.  +.+++|+|++++.++.|..++..
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHHHh
Confidence            34679999999999999888877  77899999999999999888743

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=96.25  E-value=0.017  Score=48.33  Aligned_cols=103  Identities=15%  Similarity=0.211  Sum_probs=48.5

Q ss_pred             ceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCcc--C
Q 025470           67 IQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNY--F  138 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~--~  138 (252)
                      .+|+|+|.-.|..++.+|..    .+...|+|||++........  +...     .-.++|.++++|..+.  +...  +
T Consensus        34 d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~h-----p~~~rI~~i~Gds~d~~~~~~v~~~  106 (206)
T PF04989_consen   34 DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESH-----PMSPRITFIQGDSIDPEIVDQVREL  106 (206)
T ss_dssp             SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG---------TTEEEEES-SSSTHHHHTSGSS
T ss_pred             CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--Hhhc-----cccCceEEEECCCCCHHHHHHHHHh
Confidence            48999999999999988764    37889999999654321110  1000     1126899999997521  1100  0


Q ss_pred             -CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          139 -EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       139 -~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                       ....-..|+.   |......|      .-.-|+.+..+|++|+.+++
T Consensus       107 ~~~~~~vlVil---Ds~H~~~h------vl~eL~~y~plv~~G~Y~IV  145 (206)
T PF04989_consen  107 ASPPHPVLVIL---DSSHTHEH------VLAELEAYAPLVSPGSYLIV  145 (206)
T ss_dssp             ----SSEEEEE---SS----SS------HHHHHHHHHHT--TT-EEEE
T ss_pred             hccCCceEEEE---CCCccHHH------HHHHHHHhCccCCCCCEEEE
Confidence             0111112221   22111111      12467779999999998865

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.20  E-value=0.018  Score=50.62  Aligned_cols=75  Identities=17%  Similarity=0.329  Sum_probs=58.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC---CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE---KG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~---~~  141 (252)
                      ..+.||.=.|.|.++..+..+.|+. .++|+|.++.+++.|++.+...       .+++.+++.+... +...++   .+
T Consensus        24 ~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~-------~~r~~~v~~~F~~-l~~~l~~~~i~   95 (314)
T COG0275          24 DGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEF-------DGRVTLVHGNFAN-LAEALKELGIG   95 (314)
T ss_pred             CcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhcc-------CCcEEEEeCcHHH-HHHHHHhcCCC
Confidence            4699999999999999999998855 5999999999999998876542       3689999988653 332222   35


Q ss_pred             cccEEEE
Q 025470          142 QLTKMFF  148 (252)
Q Consensus       142 s~d~i~~  148 (252)
                      .+|.|.+
T Consensus        96 ~vDGiL~  102 (314)
T COG0275          96 KVDGILL  102 (314)
T ss_pred             ceeEEEE
Confidence            7787764

>PRK13699 putative methylase; Provisional

Probab=96.19  E-value=0.016  Score=49.40  Aligned_cols=46  Identities=20%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL  112 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~  112 (252)
                      ++.+|||-=||+|..+++..+.  +.+++|+|+++..++.|.+++...
T Consensus       163 ~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        163 PNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHHHHH
Confidence            3679999999999998888777  778999999999999998887664

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.15  E-value=0.21  Score=42.74  Aligned_cols=122  Identities=11%  Similarity=0.038  Sum_probs=67.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..||=||=+. ..++++|...+...++.+||++..++..++.....      +++ |+.++.|+...||..+ .+.+|.
T Consensus        45 gk~il~lGDDD-LtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~------gl~-i~~~~~DlR~~LP~~~-~~~fD~  115 (243)
T PF01861_consen   45 GKRILFLGDDD-LTSLALALTGLPKRITVVDIDERLLDFINRVAEEE------GLP-IEAVHYDLRDPLPEEL-RGKFDV  115 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHH------T---EEEE---TTS---TTT-SS-BSE
T ss_pred             CCEEEEEcCCc-HHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHc------CCc-eEEEEecccccCCHHH-hcCCCE
Confidence            45799999554 55667777777889999999999999998877665      676 9999999886665433 478999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEEEeCchH--HH--HHHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYTITDVEE--LG--DWMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~~td~~~--~~--~~~~~~~~~~~~  205 (252)
                      ++...|  |-. ...      .-|+......||..| ..++..-..+  ..  ..+.+.+.+.++
T Consensus       116 f~TDPP--yT~-~G~------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~~Q~~l~~~gl  171 (243)
T PF01861_consen  116 FFTDPP--YTP-EGL------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLEVQRFLLEMGL  171 (243)
T ss_dssp             EEE-----SSH-HHH------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHHHHHHHHTS--
T ss_pred             EEeCCC--CCH-HHH------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHHHHHHHHHCCc
Confidence            887543  211 111      248889999998655 6566432222  32  345566665554

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=96.11  E-value=0.041  Score=49.79  Aligned_cols=96  Identities=19%  Similarity=0.176  Sum_probs=66.0

Q ss_pred             eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCC-Cccc
Q 025470           68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEK-GQLT  144 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~-~s~d  144 (252)
                      .|+=+|||. |.+++.+|+......++.+|+++..++.|++..         +.+-+..... +....+.. ... .-+|
T Consensus       171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~---------g~~~~~~~~~~~~~~~~~~-~t~g~g~D  240 (350)
T COG1063         171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAG---------GADVVVNPSEDDAGAEILE-LTGGRGAD  240 (350)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhC---------CCeEeecCccccHHHHHHH-HhCCCCCC
Confidence            899999998 888899999988889999999999998886532         2222222212 22111111 112 2578


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++-.-..+              ..+..+.+.+++||++.+.-
T Consensus       241 ~vie~~G~~--------------~~~~~ai~~~r~gG~v~~vG  269 (350)
T COG1063         241 VVIEAVGSP--------------PALDQALEALRPGGTVVVVG  269 (350)
T ss_pred             EEEECCCCH--------------HHHHHHHHHhcCCCEEEEEe
Confidence            887654332              38899999999999999865

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=96.10  E-value=0.039  Score=50.35  Aligned_cols=114  Identities=15%  Similarity=0.133  Sum_probs=65.0

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC-cccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN-SMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d-a~~~l~~~~~~~s~  143 (252)
                      +..||.+|||. |..++.+|+......++++|.++...+.+++..         +...+.....+ ....+........+
T Consensus       185 g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~---------~~~vi~~~~~~~~~~~l~~~~~~~~~  255 (386)
T cd08283         185 GDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHL---------GAETINFEEVDDVVEALRELTGGRGP  255 (386)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC---------CcEEEcCCcchHHHHHHHHHcCCCCC
Confidence            45789999998 999999999975446999999998877665421         22212221221 21112222223357


Q ss_pred             cEEEEeCCC-----Cccccccc--cccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          144 TKMFFLFPD-----PHFKEKNH--RRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       144 d~i~~~fpd-----P~~k~~h~--krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |.|+-....     +|.+...+  ..+--....+.++.+.|+++|++++...
T Consensus       256 D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~  307 (386)
T cd08283         256 DVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV  307 (386)
T ss_pred             CEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence            776543211     11110000  0000123578889999999999988754

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=96.05  E-value=0.0075  Score=53.84  Aligned_cols=115  Identities=15%  Similarity=0.077  Sum_probs=74.6

Q ss_pred             CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHH-------HHHHHHHHhhcCCCC-cc-cEEEEeCCccccc
Q 025470           64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEY-------VKERILALRVSNPGQ-YQ-NISVVRTNSMKYI  134 (252)
Q Consensus        64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~-------a~~~~~~~~~~~~~~-~~-nv~~~~~da~~~l  134 (252)
                      +++.+|+|-=-|+|.+++..|.-  +..++|.||+-.++..       ..+|+.+.      + .+ =+.++.+|...  
T Consensus       207 ~pGdivyDPFVGTGslLvsaa~F--Ga~viGtDIDyr~vragrg~~~si~aNFkQY------g~~~~fldvl~~D~sn--  276 (421)
T KOG2671|consen  207 KPGDIVYDPFVGTGSLLVSAAHF--GAYVIGTDIDYRTVRAGRGEDESIKANFKQY------GSSSQFLDVLTADFSN--  276 (421)
T ss_pred             CCCCEEecCccccCceeeehhhh--cceeeccccchheeecccCCCcchhHhHHHh------CCcchhhheeeecccC--
Confidence            34679999999999999998887  7789999999988762       22333322      2 11 26677777642  


Q ss_pred             CccCCCCcccEEEEeCCC-------------------------CccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          135 PNYFEKGQLTKMFFLFPD-------------------------PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       135 ~~~~~~~s~d~i~~~fpd-------------------------P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +.+-....+|.|++..|=                         -.++..+...-.+-.++|.-.+++|..||++++-.+
T Consensus       277 ~~~rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~p  355 (421)
T KOG2671|consen  277 PPLRSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWLP  355 (421)
T ss_pred             cchhhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEecC
Confidence            222335678998875541                         111111222222334678888999999999988543

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.05  E-value=0.025  Score=48.23  Aligned_cols=104  Identities=16%  Similarity=0.138  Sum_probs=69.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...||=+|.++|......+.. .|+..|++||.|...=..   .+.-.     ..-+||--+.-||...-..-.--.-+
T Consensus       156 pGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRd---L~nmA-----kkRtNiiPIiEDArhP~KYRmlVgmV  227 (317)
T KOG1596|consen  156 PGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRD---LINMA-----KKRTNIIPIIEDARHPAKYRMLVGMV  227 (317)
T ss_pred             CCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHH---HHHHh-----hccCCceeeeccCCCchheeeeeeeE
Confidence            3568999999999999999988 688899999999853211   11111     24579999999987321111112467


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.||...+.|-.-      |    -+.-.....||+||.|++.
T Consensus       228 DvIFaDvaqpdq~------R----ivaLNA~~FLk~gGhfvis  260 (317)
T KOG1596|consen  228 DVIFADVAQPDQA------R----IVALNAQYFLKNGGHFVIS  260 (317)
T ss_pred             EEEeccCCCchhh------h----hhhhhhhhhhccCCeEEEE
Confidence            8887766554311      1    2344567789999998885

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=95.99  E-value=0.013  Score=48.73  Aligned_cols=39  Identities=23%  Similarity=0.223  Sum_probs=32.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVK  106 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~  106 (252)
                      +.+|||.=||+|..+.+..+.  +.+++|+|+++..++.|+
T Consensus       192 gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  192 GDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             T-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred             ceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence            679999999999998888887  678999999999888775

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.96  E-value=0.0071  Score=51.22  Aligned_cols=121  Identities=20%  Similarity=0.240  Sum_probs=72.5

Q ss_pred             cccccccCCCCCCCCCCCCCCCCCCCCCc----cccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEE
Q 025470           19 KRFYRARAHSNPLSDSHFPVPISPSHVDY----SLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIG   94 (252)
Q Consensus        19 ~~~~~~r~~~np~~~~~~~~~~~~~~~~w----~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iG   94 (252)
                      .+||..|.+.  .++. .-.|..|+..+.    +++.....   ++. ...+-++||||.|.-.+---+..+.=+..|+|
T Consensus        35 ~~fY~v~~wd--iPeg-~LCPpvPgRAdYih~laDLL~s~~---g~~-~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvG  107 (292)
T COG3129          35 AHFYAVRYWD--IPEG-FLCPPVPGRADYIHHLADLLASTS---GQI-PGKNIRILDIGVGANCIYPLIGVHEYGWRFVG  107 (292)
T ss_pred             HHhcceeEec--CCCC-CcCCCCCChhHHHHHHHHHHHhcC---CCC-CcCceEEEeeccCcccccccccceeecceeec
Confidence            4677666664  3333 224555655543    33333221   111 13456899999998877666666655789999


Q ss_pred             EecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeC-CcccccCccCC-CCcccEEEEeCC
Q 025470           95 MELRDKVTEYVKERILALRVSNPGQYQ-NISVVRT-NSMKYIPNYFE-KGQLTKMFFLFP  151 (252)
Q Consensus        95 iDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~-da~~~l~~~~~-~~s~d~i~~~fp  151 (252)
                      .|+++.+++.|+..+...     .++. .+++... |-...++.... .+.+|...+|.|
T Consensus       108 seid~~sl~sA~~ii~~N-----~~l~~~I~lr~qk~~~~if~giig~nE~yd~tlCNPP  162 (292)
T COG3129         108 SEIDSQSLSSAKAIISAN-----PGLERAIRLRRQKDSDAIFNGIIGKNERYDATLCNPP  162 (292)
T ss_pred             CccCHHHHHHHHHHHHcC-----cchhhheeEEeccCccccccccccccceeeeEecCCC
Confidence            999999999998877542     1232 2555442 32223443333 567888887765

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.90  E-value=0.013  Score=50.76  Aligned_cols=114  Identities=12%  Similarity=0.071  Sum_probs=64.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-------------CCCC---------c-cc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-------------NPGQ---------Y-QN  122 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-------------~~~~---------~-~n  122 (252)
                      ..++||||||.-.+-..-|..+ -.+++..|..+.-++..++.++.. ..             ....         + ..
T Consensus        57 g~~llDiGsGPtiy~~lsa~~~-f~~I~l~dy~~~N~~el~kWl~~~-~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   57 GETLLDIGSGPTIYQLLSACEW-FEEIVLSDYSEQNREELEKWLRKE-GAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             EEEEEEES-TT--GGGTTGGGT-EEEEEEEESSHHHHHHHHHHHTT--TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             CCEEEEeCCCcHHHhhhhHHHh-hcceEEeeccHhhHHHHHHHHCCC-CCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            4589999999965543333222 336899999998777666554322 11             0000         0 12


Q ss_pred             E-EEEeCCcccccCccCCC-----CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          123 I-SVVRTNSMKYIPNYFEK-----GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       123 v-~~~~~da~~~l~~~~~~-----~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      | +++.+|+..  ++.+.+     ..+|.|...|.---.-+.    +-.....++.+.++|||||.|++..
T Consensus       135 Vk~Vv~cDV~~--~~pl~~~~~~p~~~D~v~s~fcLE~a~~d----~~~y~~al~ni~~lLkpGG~Lil~~  199 (256)
T PF01234_consen  135 VKQVVPCDVTQ--PNPLDPPVVLPPKFDCVISSFCLESACKD----LDEYRRALRNISSLLKPGGHLILAG  199 (256)
T ss_dssp             EEEEEE--TTS--SSTTTTS-SS-SSEEEEEEESSHHHH-SS----HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hceEEEeeccC--CCCCCccccCccchhhhhhhHHHHHHcCC----HHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            3 477888853  233433     358988887742111111    1123458999999999999999864

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=95.70  E-value=0.11  Score=46.73  Aligned_cols=92  Identities=16%  Similarity=0.201  Sum_probs=62.1

Q ss_pred             CceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCcc
Q 025470           66 KIQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~  143 (252)
                      ...|+=+|+| -|.+++.+|+..- .+++++|++++-.+.|++.          +.+.  ++.. |.. .+.. . .+.+
T Consensus       167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l----------GAd~--~i~~~~~~-~~~~-~-~~~~  230 (339)
T COG1064         167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL----------GADH--VINSSDSD-ALEA-V-KEIA  230 (339)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh----------CCcE--EEEcCCch-hhHH-h-HhhC
Confidence            4566666665 5788899999764 8999999999987777642          3332  2221 221 1221 1 1238


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |.|+..-+ +              ..+..+.+.|++||++++.-.
T Consensus       231 d~ii~tv~-~--------------~~~~~~l~~l~~~G~~v~vG~  260 (339)
T COG1064         231 DAIIDTVG-P--------------ATLEPSLKALRRGGTLVLVGL  260 (339)
T ss_pred             cEEEECCC-h--------------hhHHHHHHHHhcCCEEEEECC
Confidence            88887765 3              388899999999999998753

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.68  E-value=0.063  Score=45.74  Aligned_cols=111  Identities=16%  Similarity=0.098  Sum_probs=68.7

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE-EeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV-VRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~-~~~da~~~l~~~~~~~s~  143 (252)
                      ++.++||||+-+|.|+..+.++. ...++|||+.-..+.+-   ++        .-++|.. -+.|+...-+..+.. ..
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~k---LR--------~d~rV~~~E~tN~r~l~~~~~~~-~~  145 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWK---LR--------NDPRVIVLERTNVRYLTPEDFTE-KP  145 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHh---Hh--------cCCcEEEEecCChhhCCHHHccc-CC
Confidence            35699999999999999999885 45799999988765442   21        2334433 345655322222322 44


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      |.+++.-+.=-           -..+|-.+..+|+++|.++...  ...++...+.+.
T Consensus       146 d~~v~DvSFIS-----------L~~iLp~l~~l~~~~~~~v~Lv--KPQFEagr~~v~  190 (245)
T COG1189         146 DLIVIDVSFIS-----------LKLILPALLLLLKDGGDLVLLV--KPQFEAGREQVG  190 (245)
T ss_pred             CeEEEEeehhh-----------HHHHHHHHHHhcCCCceEEEEe--cchhhhhhhhcC
Confidence            55554321100           1247788888999998877643  455666666554

>PRK11524 putative methyltransferase; Provisional

Probab=95.60  E-value=0.021  Score=50.18  Aligned_cols=72  Identities=14%  Similarity=0.120  Sum_probs=47.4

Q ss_pred             ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccc--ccc----cc--ccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEK--NHR----RR--VISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       121 ~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~--h~k----rr--~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      .+.+++++|+.+.+. .++++++|.|+++.|=.-.+..  ...    .+  -....++.++.++|||||.|++..+...+
T Consensus         7 ~~~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~~~~~~   85 (284)
T PRK11524          7 EAKTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMNSTENM   85 (284)
T ss_pred             CCCEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCchhh
Confidence            456789999987553 4678899999987552110000  000    00  00146889999999999999998877544


Q ss_pred             H
Q 025470          193 G  193 (252)
Q Consensus       193 ~  193 (252)
                      .
T Consensus        86 ~   86 (284)
T PRK11524         86 P   86 (284)
T ss_pred             h
Confidence            3

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=95.59  E-value=0.025  Score=52.10  Aligned_cols=57  Identities=19%  Similarity=0.260  Sum_probs=43.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT  128 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~  128 (252)
                      ...|||||+|+|.+++..++...+ .++++|....|.+.|++...+     ..-.++|.++.-
T Consensus        67 kv~vLdigtGTGLLSmMAvragaD-~vtA~EvfkPM~d~arkI~~k-----ng~SdkI~vInk  123 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAGAD-SVTACEVFKPMVDLARKIMHK-----NGMSDKINVINK  123 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhcCC-eEEeehhhchHHHHHHHHHhc-----CCCccceeeecc
Confidence            458999999999999988888754 599999999999988765433     233456766653

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.52  E-value=0.05  Score=45.02  Aligned_cols=69  Identities=10%  Similarity=0.106  Sum_probs=51.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|+|+|..++..|+.. ...++..|+.+..+..+.-|...       +.-++.++..|..      ..+..+|.
T Consensus        80 gkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~a-------ngv~i~~~~~d~~------g~~~~~Dl  145 (218)
T COG3897          80 GKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAA-------NGVSILFTHADLI------GSPPAFDL  145 (218)
T ss_pred             cceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhh-------ccceeEEeecccc------CCCcceeE
Confidence            4589999999999999888885 45789999998777655555433       2346888888864      13667888


Q ss_pred             EEE
Q 025470          146 MFF  148 (252)
Q Consensus       146 i~~  148 (252)
                      +..
T Consensus       146 ~La  148 (218)
T COG3897         146 LLA  148 (218)
T ss_pred             EEe
Confidence            864

>COG4301 Uncharacterized conserved protein [Function unknown]

Probab=95.52  E-value=0.14  Score=43.94  Aligned_cols=110  Identities=10%  Similarity=0.144  Sum_probs=71.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC----CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP----EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p----~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ....+|+|+|+-.=+..|...+.    -.+++.||+|...++...+.+...    ..++ .+.-+.+|....|.. ++ +
T Consensus        79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~----y~~l-~v~~l~~~~~~~La~-~~-~  151 (321)
T COG4301          79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILRE----YPGL-EVNALCGDYELALAE-LP-R  151 (321)
T ss_pred             cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHh----CCCC-eEeehhhhHHHHHhc-cc-C
Confidence            45899999999887776666543    378999999999886655444331    1222 356667776544432 22 3


Q ss_pred             cccEEEEeC--------CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025470          142 QLTKMFFLF--------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD  194 (252)
Q Consensus       142 s~d~i~~~f--------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~  194 (252)
                      .-..++++.        |++            ...|+.++...|.||-.+.+-+|-..-++
T Consensus       152 ~~~Rl~~flGStlGN~tp~e------------~~~Fl~~l~~a~~pGd~~LlGvDl~k~Ae  200 (321)
T COG4301         152 GGRRLFVFLGSTLGNLTPGE------------CAVFLTQLRGALRPGDYFLLGVDLRKPAE  200 (321)
T ss_pred             CCeEEEEEecccccCCChHH------------HHHHHHHHHhcCCCcceEEEeccccCHHH
Confidence            333444321        222            23599999999999999999888644333

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=95.28  E-value=0.029  Score=52.34  Aligned_cols=132  Identities=14%  Similarity=0.136  Sum_probs=87.8

Q ss_pred             CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC----C
Q 025470           64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF----E  139 (252)
Q Consensus        64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~----~  139 (252)
                      .+...+|=||=|.|.+...+....|...+++||+++.|++.|...+.-.+      ....++.-.|..+++....    .
T Consensus       294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q------~~r~~V~i~dGl~~~~~~~k~~~~  367 (482)
T KOG2352|consen  294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQ------SDRNKVHIADGLDFLQRTAKSQQE  367 (482)
T ss_pred             cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhh------hhhhhhhHhhchHHHHHHhhcccc
Confidence            34567888999999999999999999999999999999999988775442      1123344444433332211    2


Q ss_pred             CCcccEEEEeC--CCCccccccccccccCHHHHHHHHHhhcCCcEEEE--EeCchHHHHHHHHHHhc
Q 025470          140 KGQLTKMFFLF--PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT--ITDVEELGDWMRSCLEN  202 (252)
Q Consensus       140 ~~s~d~i~~~f--pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~--~td~~~~~~~~~~~~~~  202 (252)
                      +..+|.+.+.-  +|+.--. -..--.+...++..+...|.|-|.+.+  +|-+..+...+...+..
T Consensus       368 ~~~~dvl~~dvds~d~~g~~-~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~l~~  433 (482)
T KOG2352|consen  368 DICPDVLMVDVDSKDSHGMQ-CPPPAFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMNLAK  433 (482)
T ss_pred             ccCCcEEEEECCCCCcccCc-CCchHHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHhhhh
Confidence            45677777543  2311100 011123456788999999999998866  67777777777776653

>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.25  E-value=0.029  Score=50.36  Aligned_cols=108  Identities=16%  Similarity=0.193  Sum_probs=61.8

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      .+||+|.|.|.-+.++-..+|+. ..+-+|.|+..-+ ....+...     ........-..|+.+.....-+..+++.+
T Consensus       116 siLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrk-V~~tl~~n-----v~t~~td~r~s~vt~dRl~lp~ad~ytl~  189 (484)
T COG5459         116 SILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRK-VGDTLAEN-----VSTEKTDWRASDVTEDRLSLPAADLYTLA  189 (484)
T ss_pred             hhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHH-HHHHHHhh-----cccccCCCCCCccchhccCCCccceeehh
Confidence            49999999999999999999976 4566777775432 22222221     11111112222322111111224556666


Q ss_pred             EEe---CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          147 FFL---FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       147 ~~~---fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      ++.   .|+--.|.        -...++.+-.++.|||.|+|+-.-
T Consensus       190 i~~~eLl~d~~ek~--------i~~~ie~lw~l~~~gg~lVivErG  227 (484)
T COG5459         190 IVLDELLPDGNEKP--------IQVNIERLWNLLAPGGHLVIVERG  227 (484)
T ss_pred             hhhhhhccccCcch--------HHHHHHHHHHhccCCCeEEEEeCC
Confidence            543   23332221        114889999999999999998643

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=95.14  E-value=0.41  Score=41.22  Aligned_cols=123  Identities=17%  Similarity=0.191  Sum_probs=67.0

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCc-cc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQ-LT  144 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s-~d  144 (252)
                      -.|||+|+|+|-.++..|... ..+|.--|...... .-..+...... .-++.. ++.+...+....++..+.... +|
T Consensus        88 ~~vlELGsGtglvG~~aa~~~-~~~v~ltD~~~~~~-~L~~~~~~~~~-~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   88 INVLELGSGTGLVGILAALLL-GAEVVLTDLPKVVE-NLKFNRDKNNI-ALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             eeEEEecCCccHHHHHHHHHh-cceeccCCchhhHH-HHHHhhhhhhh-hhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            469999999997777777653 55777667654332 22222111100 001111 333333332222221122222 77


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      .|+.  .|.+....+      -..++..++..|..+|.+++.+.-++-..|-.+.+
T Consensus       165 lila--sDvvy~~~~------~e~Lv~tla~ll~~~~~i~l~~~lr~~~~~~~~~~  212 (248)
T KOG2793|consen  165 LILA--SDVVYEEES------FEGLVKTLAFLLAKDGTIFLAYPLRRDAAWEIEVL  212 (248)
T ss_pred             EEEE--eeeeecCCc------chhHHHHHHHHHhcCCeEEEEEecccchHHHHHHH
Confidence            7764  244443332      23699999999999999999998766555554444

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=95.13  E-value=0.041  Score=41.77  Aligned_cols=89  Identities=18%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcccEEEEeCCCC
Q 025470           75 GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQLTKMFFLFPDP  153 (252)
Q Consensus        75 G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~d~i~~~fpdP  153 (252)
                      |.|.+++.+|+... .+++++|.++..++.+++    +      +...+-... .|..+.+........+|.|+-.... 
T Consensus         1 ~vG~~a~q~ak~~G-~~vi~~~~~~~k~~~~~~----~------Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~-   68 (130)
T PF00107_consen    1 GVGLMAIQLAKAMG-AKVIATDRSEEKLELAKE----L------GADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS-   68 (130)
T ss_dssp             HHHHHHHHHHHHTT-SEEEEEESSHHHHHHHHH----T------TESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-
T ss_pred             ChHHHHHHHHHHcC-CEEEEEECCHHHHHHHHh----h------cccccccccccccccccccccccccceEEEEecCc-
Confidence            56899999999986 999999999987776653    1      433221111 1222233333334468888765432 


Q ss_pred             ccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          154 HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       154 ~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                                   ...++....+|+++|++.+..-
T Consensus        69 -------------~~~~~~~~~~l~~~G~~v~vg~   90 (130)
T PF00107_consen   69 -------------GDTLQEAIKLLRPGGRIVVVGV   90 (130)
T ss_dssp             -------------HHHHHHHHHHEEEEEEEEEESS
T ss_pred             -------------HHHHHHHHHHhccCCEEEEEEc
Confidence                         3589999999999999999764

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.79  E-value=0.17  Score=44.25  Aligned_cols=74  Identities=18%  Similarity=0.212  Sum_probs=50.9

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .++|+-||.|.+...+.... -..+.++|+++.+++..+.+.           ++. ++.+|+.+.....+ ...+|.++
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N~-----------~~~-~~~~Di~~~~~~~~-~~~~D~l~   67 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEANF-----------PNK-LIEGDITKIDEKDF-IPDIDLLT   67 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHhC-----------CCC-CccCccccCchhhc-CCCCCEEE
Confidence            48999999999988888774 335789999998876554432           222 56677764322111 34689999


Q ss_pred             EeCCCCcc
Q 025470          148 FLFPDPHF  155 (252)
Q Consensus       148 ~~fpdP~~  155 (252)
                      ..+|..-+
T Consensus        68 ~gpPCq~f   75 (275)
T cd00315          68 GGFPCQPF   75 (275)
T ss_pred             eCCCChhh
Confidence            98875543

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.64  E-value=0.071  Score=44.81  Aligned_cols=119  Identities=16%  Similarity=0.163  Sum_probs=65.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCC--CeEEEEecCHhHHHHHHHHHHHHhhc-----------------------------
Q 025470           67 IQFADIGCGFGGLLISLSTLFPE--VLMIGMELRDKVTEYVKERILALRVS-----------------------------  115 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~--~~~iGiDis~~~i~~a~~~~~~~~~~-----------------------------  115 (252)
                      -.+-|-+||+|.++.-++-.+++  .+++|.||++++++.|++|+..++..                             
T Consensus        53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~  132 (246)
T PF11599_consen   53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD  132 (246)
T ss_dssp             EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred             eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence            37999999999999998888765  37999999999999999886432110                             


Q ss_pred             -------CCCCcccEEEEeCCcccc--cCccCCCCcccEEEEeCC----CCccccccccccccCHHHHHHHHHhhcCCcE
Q 025470          116 -------NPGQYQNISVVRTNSMKY--IPNYFEKGQLTKMFFLFP----DPHFKEKNHRRRVISPHLLDEYAYVLGVGGI  182 (252)
Q Consensus       116 -------~~~~~~nv~~~~~da~~~--l~~~~~~~s~d~i~~~fp----dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~  182 (252)
                             ..++..-..+.+.|+.+-  +...-.....|.|+...|    ..|......   --...+|+.++.+|-.+++
T Consensus       133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~---~p~~~ml~~l~~vLp~~sV  209 (246)
T PF11599_consen  133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSG---GPVAQMLNSLAPVLPERSV  209 (246)
T ss_dssp             HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---H---HHHHHHHHHHHCCS-TT-E
T ss_pred             HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCC---CcHHHHHHHHHhhCCCCcE
Confidence                   111222355666665420  000011233577776655    334321110   0134699999999954555


Q ss_pred             EEEEeCc
Q 025470          183 IYTITDV  189 (252)
Q Consensus       183 l~~~td~  189 (252)
                      +.+ ||-
T Consensus       210 V~v-~~k  215 (246)
T PF11599_consen  210 VAV-SDK  215 (246)
T ss_dssp             EEE-EES
T ss_pred             EEE-ecC
Confidence            555 653

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]

Probab=94.51  E-value=0.28  Score=43.54  Aligned_cols=36  Identities=28%  Similarity=0.270  Sum_probs=30.2

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVT  102 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i  102 (252)
                      +++.||--|||.|.++..||...+.  .-|=|.|-=|+
T Consensus       150 ~ki~iLvPGaGlGRLa~dla~~G~~--~qGNEfSy~Ml  185 (369)
T KOG2798|consen  150 TKIRILVPGAGLGRLAYDLACLGFK--CQGNEFSYFML  185 (369)
T ss_pred             cCceEEecCCCchhHHHHHHHhccc--ccccHHHHHHH
Confidence            4679999999999999999999664  45668888775

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=94.39  E-value=0.14  Score=42.48  Aligned_cols=111  Identities=15%  Similarity=0.075  Sum_probs=62.8

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhH---HHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKV---TEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~---i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ...|+|+=-|.|.++.-++.. .|...|+++=..+..   ..... ++...  ..+....|+..+..+.. .+   ++++
T Consensus        49 g~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~-r~~~~--~~e~~~aN~e~~~~~~~-A~---~~pq  121 (238)
T COG4798          49 GATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGP-RLNAA--AREPVYANVEVIGKPLV-AL---GAPQ  121 (238)
T ss_pred             CCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhh-hhhhh--hhhhhhhhhhhhCCccc-cc---CCCC
Confidence            569999999999999999987 455566665433221   11100 11110  12235567777666643 22   2455


Q ss_pred             cccEEEEe--CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFL--FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~--fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+|.+..+  +-|-..+.-|   --+-..+.+.+.+.|||||.+.+.
T Consensus       122 ~~d~~~~~~~yhdmh~k~i~---~~~A~~vna~vf~~LKPGGv~~V~  165 (238)
T COG4798         122 KLDLVPTAQNYHDMHNKNIH---PATAAKVNAAVFKALKPGGVYLVE  165 (238)
T ss_pred             cccccccchhhhhhhccccC---cchHHHHHHHHHHhcCCCcEEEEE
Confidence            66666542  1111111111   112345888999999999999874

>PRK13699 putative methylase; Provisional

Probab=94.33  E-value=0.13  Score=43.71  Aligned_cols=80  Identities=10%  Similarity=0.053  Sum_probs=48.2

Q ss_pred             EEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccc-------cCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025470          123 ISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRV-------ISPHLLDEYAYVLGVGGIIYTITDVEELGDW  195 (252)
Q Consensus       123 v~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~-------~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~  195 (252)
                      .+++++|+.+.+. .++++++|.|+...|=---.+.+..+.+       -...++.++.|+|||||.+++-+++.... .
T Consensus         2 ~~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~~~~~-~   79 (227)
T PRK13699          2 SRFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGWNRVD-R   79 (227)
T ss_pred             CeEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEeccccHH-H
Confidence            4678899987665 4889999999875431100011111111       01367899999999999998866654332 2


Q ss_pred             HHHHHhcCC
Q 025470          196 MRSCLENHP  204 (252)
Q Consensus       196 ~~~~~~~~~  204 (252)
                      ....+...+
T Consensus        80 ~~~al~~~G   88 (227)
T PRK13699         80 FMAAWKNAG   88 (227)
T ss_pred             HHHHHHHCC
Confidence            334444444

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=94.24  E-value=0.61  Score=34.58  Aligned_cols=99  Identities=13%  Similarity=0.120  Sum_probs=65.1

Q ss_pred             CcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCcccEEEEe
Q 025470           74 CGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQLTKMFFL  149 (252)
Q Consensus        74 cG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s~d~i~~~  149 (252)
                      ||.|.++..+++..  .+..++.+|.+++.++.+..          .+   +.++.+|+.+.  |. -..-...+.+++.
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----------~~---~~~i~gd~~~~~~l~-~a~i~~a~~vv~~   69 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----------EG---VEVIYGDATDPEVLE-RAGIEKADAVVIL   69 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----------TT---SEEEES-TTSHHHHH-HTTGGCESEEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----------cc---cccccccchhhhHHh-hcCccccCEEEEc
Confidence            56677887777762  23479999999987655432          13   66889998642  11 1223567888888


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025470          150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR  197 (252)
Q Consensus       150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~  197 (252)
                      .++.-.           .-.+....+.+-|...++...+++++...+.
T Consensus        70 ~~~d~~-----------n~~~~~~~r~~~~~~~ii~~~~~~~~~~~l~  106 (116)
T PF02254_consen   70 TDDDEE-----------NLLIALLARELNPDIRIIARVNDPENAELLR  106 (116)
T ss_dssp             SSSHHH-----------HHHHHHHHHHHTTTSEEEEEESSHHHHHHHH
T ss_pred             cCCHHH-----------HHHHHHHHHHHCCCCeEEEEECCHHHHHHHH
Confidence            776532           1355566777889999999998888866553

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=93.97  E-value=0.34  Score=44.45  Aligned_cols=88  Identities=13%  Similarity=0.094  Sum_probs=46.1

Q ss_pred             ceEEEEcCcccHHHHHHHH--------H-------CCCCeEEEEecCHhHHHHHHHHHHHHhhc----CC----CCcccE
Q 025470           67 IQFADIGCGFGGLLISLST--------L-------FPEVLMIGMELRDKVTEYVKERILALRVS----NP----GQYQNI  123 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~--------~-------~p~~~~iGiDis~~~i~~a~~~~~~~~~~----~~----~~~~nv  123 (252)
                      -.|+|+|||+|..++.+..        +       .|+..++--|.-.+=....-+.+...+..    ..    .+. +-
T Consensus        65 ~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~-~~  143 (386)
T PLN02668         65 FTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGH-RS  143 (386)
T ss_pred             eeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCC-Cc
Confidence            3799999999977654422        1       24677777776544222222222211100    00    011 11


Q ss_pred             EEEeCCcccccCccCCCCcccEEEEeCCCCcc
Q 025470          124 SVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHF  155 (252)
Q Consensus       124 ~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~  155 (252)
                      .|+.+-..-+-...||+++++.++..+.-.|-
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWL  175 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWL  175 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeeccceec
Confidence            23332222233566899999999877655553

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=93.76  E-value=0.11  Score=48.68  Aligned_cols=106  Identities=11%  Similarity=0.154  Sum_probs=79.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccC-ccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIP-NYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~-~~~~~~s  142 (252)
                      ...|||.=|++|.-++..|...|+. .+++-|.++.+++..++++...      +. +-|...+.||...+- ..-....
T Consensus       110 ~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N------~v~~ive~~~~DA~~lM~~~~~~~~~  183 (525)
T KOG1253|consen  110 SLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELN------GVEDIVEPHHSDANVLMYEHPMVAKF  183 (525)
T ss_pred             cchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhc------CchhhcccccchHHHHHHhccccccc
Confidence            4589999999999999999998875 6899999999999888887542      33 336677788764321 1122468


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCc
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDV  189 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~  189 (252)
                      ||.|.+   ||+-.         ...||+.+.+.+..||.+.++ ||-
T Consensus       184 FDvIDL---DPyGs---------~s~FLDsAvqav~~gGLL~vT~TD~  219 (525)
T KOG1253|consen  184 FDVIDL---DPYGS---------PSPFLDSAVQAVRDGGLLCVTCTDM  219 (525)
T ss_pred             cceEec---CCCCC---------ccHHHHHHHHHhhcCCEEEEEecch
Confidence            999987   45421         225999999999999999874 554

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=93.63  E-value=0.11  Score=43.60  Aligned_cols=88  Identities=15%  Similarity=0.294  Sum_probs=57.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-cCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-IPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-l~~~~~~~s~d~  145 (252)
                      -.+|||||=+.......   .+-..++.||+++.                     .=.+.+.|..+. ++. -+.+.||.
T Consensus        53 lrlLEVGals~~N~~s~---~~~fdvt~IDLns~---------------------~~~I~qqDFm~rplp~-~~~e~Fdv  107 (219)
T PF11968_consen   53 LRLLEVGALSTDNACST---SGWFDVTRIDLNSQ---------------------HPGILQQDFMERPLPK-NESEKFDV  107 (219)
T ss_pred             ceEEeecccCCCCcccc---cCceeeEEeecCCC---------------------CCCceeeccccCCCCC-CcccceeE
Confidence            48999999876544443   34456999998752                     122445565431 111 23567887


Q ss_pred             EEE----eC-CCCccccccccccccCHHHHHHHHHhhcCCcE-----EEEEeCc
Q 025470          146 MFF----LF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGI-----IYTITDV  189 (252)
Q Consensus       146 i~~----~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~-----l~~~td~  189 (252)
                      |.+    || |+|-  .|.        +.+..+++.|+|+|.     ++++++.
T Consensus       108 Is~SLVLNfVP~p~--~RG--------~Ml~r~~~fL~~~g~~~~~~LFlVlP~  151 (219)
T PF11968_consen  108 ISLSLVLNFVPDPK--QRG--------EMLRRAHKFLKPPGLSLFPSLFLVLPL  151 (219)
T ss_pred             EEEEEEEeeCCCHH--HHH--------HHHHHHHHHhCCCCccCcceEEEEeCc
Confidence            753    44 6654  333        599999999999999     9998753

>PHA01634 hypothetical protein

Probab=93.43  E-value=0.22  Score=38.45  Aligned_cols=44  Identities=11%  Similarity=0.095  Sum_probs=37.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERIL  110 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~  110 (252)
                      +.+|+|||.+-|..++.++.+. ...|+++|.++...+...++++
T Consensus        29 ~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~een~k   72 (156)
T PHA01634         29 QRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEEVCA   72 (156)
T ss_pred             CCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHHHhh
Confidence            4589999999999999999985 4579999999998887777654

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=93.15  E-value=0.34  Score=42.63  Aligned_cols=120  Identities=17%  Similarity=0.125  Sum_probs=69.3

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .++|+-||.|.+...+.+.. -..+.++|+++.+++.-+.|.         .    ....+|+.+.-...++. .+|.++
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N~---------~----~~~~~Di~~~~~~~l~~-~~D~l~   66 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKANF---------P----EVICGDITEIDPSDLPK-DVDLLI   66 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHHH---------T----EEEESHGGGCHHHHHHH-T-SEEE
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhcc---------c----ccccccccccccccccc-cceEEE
Confidence            58999999999999999985 336899999998766544432         2    77788887533333554 699999


Q ss_pred             EeCCCCccc-cccc-----cccccCHHHHHHHHHhhcCCcEEEEEeCc--------hHHHHHHHHHHhcCCC
Q 025470          148 FLFPDPHFK-EKNH-----RRRVISPHLLDEYAYVLGVGGIIYTITDV--------EELGDWMRSCLENHPM  205 (252)
Q Consensus       148 ~~fpdP~~k-~~h~-----krr~~~~~~l~~~~~~LkpgG~l~~~td~--------~~~~~~~~~~~~~~~~  205 (252)
                      .-+|..-+. ....     .|.-+-..+++.+ ..++|.-.| + -++        ...+..+.+.|.+.++
T Consensus        67 ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~~~v-~~~~Pk~~~-~-ENV~~l~~~~~~~~~~~i~~~l~~lGY  135 (335)
T PF00145_consen   67 GGPPCQGFSIAGKRKGFDDPRNSLFFEFLRIV-KELKPKYFL-L-ENVPGLLSSKNGEVFKEILEELEELGY  135 (335)
T ss_dssp             EE---TTTSTTSTHHCCCCHTTSHHHHHHHHH-HHHS-SEEE-E-EEEGGGGTGGGHHHHHHHHHHHHHTTE
T ss_pred             eccCCceEeccccccccccccchhhHHHHHHH-hhccceEEE-e-cccceeeccccccccccccccccccce
Confidence            988755433 2211     1111112233333 345674322 2 222        3467778888877654

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins

Probab=92.87  E-value=0.18  Score=43.44  Aligned_cols=106  Identities=14%  Similarity=0.110  Sum_probs=58.2

Q ss_pred             ceEEEEcCcccHHHHHHHHH-----CCCCeEEEEecCHhH----------------------HHHHHHHHHHHhhcCCCC
Q 025470           67 IQFADIGCGFGGLLISLSTL-----FPEVLMIGMELRDKV----------------------TEYVKERILALRVSNPGQ  119 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~-----~p~~~~iGiDis~~~----------------------i~~a~~~~~~~~~~~~~~  119 (252)
                      .-|+|.||=.|..++.++..     .++..+++.|--+.+                      +....+.+.+  .....+
T Consensus        76 GdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~--n~~~~g  153 (248)
T PF05711_consen   76 GDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRE--NFARYG  153 (248)
T ss_dssp             SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHH--CCCCTT
T ss_pred             eEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHH--HHHHcC
Confidence            37999999999887665443     256789998832210                      1111111111  122333


Q ss_pred             c--ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          120 Y--QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       120 ~--~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      +  +|++++.+...+.++. .+...+..+++..  -|..        -....|+.+...|.|||.|+|
T Consensus       154 l~~~~v~~vkG~F~dTLp~-~p~~~IAll~lD~--DlYe--------sT~~aLe~lyprl~~GGiIi~  210 (248)
T PF05711_consen  154 LLDDNVRFVKGWFPDTLPD-APIERIALLHLDC--DLYE--------STKDALEFLYPRLSPGGIIIF  210 (248)
T ss_dssp             TSSTTEEEEES-HHHHCCC--TT--EEEEEE-----SHH--------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             CCcccEEEECCcchhhhcc-CCCccEEEEEEec--cchH--------HHHHHHHHHHhhcCCCeEEEE
Confidence            3  6899999998877764 3444555555432  1221        123589999999999999988

TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=92.82  E-value=0.85  Score=43.47  Aligned_cols=42  Identities=21%  Similarity=0.294  Sum_probs=33.6

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~  107 (252)
                      +...|+=+|||. |..++..|+.. +..++++|.+++.++.+.+
T Consensus       164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~rle~aes  206 (509)
T PRK09424        164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPEVAEQVES  206 (509)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH
Confidence            356899999998 77777777776 4589999999988776654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=92.60  E-value=1.3  Score=39.62  Aligned_cols=99  Identities=14%  Similarity=0.077  Sum_probs=63.7

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc--c---cccCccC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS--M---KYIPNYF  138 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da--~---~~l~~~~  138 (252)
                      ....||=+|+|. |..+...|+......++.+|+++..++.|++ +         |.+.+.......  .   +.+...+
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~---------Ga~~~~~~~~~~~~~~~~~~v~~~~  238 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-F---------GATVTDPSSHKSSPQELAELVEKAL  238 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-h---------CCeEEeeccccccHHHHHHHHHhhc
Confidence            356899999998 8888888888888899999999999998876 3         444333332211  1   1111222


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .....|..+- .+-             ....++.....|+.||++.++-
T Consensus       239 g~~~~d~~~d-CsG-------------~~~~~~aai~a~r~gGt~vlvg  273 (354)
T KOG0024|consen  239 GKKQPDVTFD-CSG-------------AEVTIRAAIKATRSGGTVVLVG  273 (354)
T ss_pred             cccCCCeEEE-ccC-------------chHHHHHHHHHhccCCEEEEec
Confidence            2223444332 111             1247778888999999977753

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=92.54  E-value=0.37  Score=45.36  Aligned_cols=112  Identities=13%  Similarity=0.092  Sum_probs=66.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCH----hHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRD----KVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~----~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ..|+|...|.|.|+++|... |   |..+-+-+    +.+...-.          .|+   -=+.-|.-+.++  ..+.+
T Consensus       367 RNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIyd----------RGL---IG~yhDWCE~fs--TYPRT  427 (506)
T PF03141_consen  367 RNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYD----------RGL---IGVYHDWCEAFS--TYPRT  427 (506)
T ss_pred             eeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhh----------ccc---chhccchhhccC--CCCcc
Confidence            47999999999999999865 2   22232222    11111100          121   112224444444  33789


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      +|.|+.+.-..     +.+.|-.-..++-++-|+|+|||.++|. |..+..+.+...+.+-
T Consensus       428 YDLlHA~~lfs-----~~~~rC~~~~illEmDRILRP~G~~iiR-D~~~vl~~v~~i~~~l  482 (506)
T PF03141_consen  428 YDLLHADGLFS-----LYKDRCEMEDILLEMDRILRPGGWVIIR-DTVDVLEKVKKIAKSL  482 (506)
T ss_pred             hhheehhhhhh-----hhcccccHHHHHHHhHhhcCCCceEEEe-ccHHHHHHHHHHHHhC
Confidence            99998753211     1122333457999999999999999885 5566666666666543

; GO: 0008168 methyltransferase activity

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=92.12  E-value=1.2  Score=39.05  Aligned_cols=96  Identities=15%  Similarity=0.151  Sum_probs=58.3

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~  143 (252)
                      +..||..|||. |..++.+|+.. +..+++++.++...+.+++    .      +.+.+..... +....+ .......+
T Consensus       166 ~~~vli~g~g~vG~~~~~la~~~-G~~V~~~~~s~~~~~~~~~----~------g~~~~~~~~~~~~~~~~-~~~~~~~~  233 (338)
T cd08254         166 GETVLVIGLGGLGLNAVQIAKAM-GAAVIAVDIKEEKLELAKE----L------GADEVLNSLDDSPKDKK-AAGLGGGF  233 (338)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----h------CCCEEEcCCCcCHHHHH-HHhcCCCc
Confidence            44666689874 88888999986 5679999999887665532    1      3322211111 111111 12234567


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.++-....              ...++.+.+.|+++|+++...
T Consensus       234 D~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g  263 (338)
T cd08254         234 DVIFDFVGT--------------QPTFEDAQKAVKPGGRIVVVG  263 (338)
T ss_pred             eEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEC
Confidence            766533211              247888999999999998763

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=92.04  E-value=1.7  Score=38.73  Aligned_cols=95  Identities=14%  Similarity=0.206  Sum_probs=56.6

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=+|||. |..++.+|+......++++|.+++.++.+.+ +         +.+.+- .-..+..+...   ..+.+
T Consensus       170 g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~-l---------Ga~~vi~~~~~~~~~~~~---~~g~~  236 (343)
T PRK09880        170 GKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE-M---------GADKLVNPQNDDLDHYKA---EKGYF  236 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH-c---------CCcEEecCCcccHHHHhc---cCCCC
Confidence            44677789875 6677778887643468999999987766543 1         322211 00111111111   12347


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+-....              +..++...+.|++||++++.-
T Consensus       237 D~vid~~G~--------------~~~~~~~~~~l~~~G~iv~~G  266 (343)
T PRK09880        237 DVSFEVSGH--------------PSSINTCLEVTRAKGVMVQVG  266 (343)
T ss_pred             CEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence            777643322              136788889999999998864

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=91.94  E-value=2  Score=38.32  Aligned_cols=120  Identities=15%  Similarity=0.132  Sum_probs=67.0

Q ss_pred             EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEE
Q 025470           69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFF  148 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~  148 (252)
                      |+|+-||.|.+...+.+.. -..+.++|+++.+++.-+.+.           ++ .++.+|+.+.-...++  .+|.++.
T Consensus         1 vidLF~G~GG~~~Gl~~aG-~~~~~a~e~~~~a~~ty~~N~-----------~~-~~~~~Di~~~~~~~~~--~~dvl~g   65 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAG-FKCVFASEIDKYAQKTYEANF-----------GN-KVPFGDITKISPSDIP--DFDILLG   65 (315)
T ss_pred             CEEEecCccHHHHHHHHcC-CeEEEEEeCCHHHHHHHHHhC-----------CC-CCCccChhhhhhhhCC--CcCEEEe
Confidence            5899999999998888774 223578999998765544332           22 4456777642221232  5799988


Q ss_pred             eCCCC-cccccccccc-ccCHHHHHHHHHhh---cCCcEEEEEeCchH--------HHHHHHHHHhcCCC
Q 025470          149 LFPDP-HFKEKNHRRR-VISPHLLDEYAYVL---GVGGIIYTITDVEE--------LGDWMRSCLENHPM  205 (252)
Q Consensus       149 ~fpdP-~~k~~h~krr-~~~~~~l~~~~~~L---kpgG~l~~~td~~~--------~~~~~~~~~~~~~~  205 (252)
                      -+|.. +......+.. -....++.++.+++   +|.  +++.-++..        .+..+...+...++
T Consensus        66 g~PCq~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~P~--~~v~ENV~~l~~~~~~~~~~~i~~~l~~~GY  133 (315)
T TIGR00675        66 GFPCQPFSIAGKRKGFEDTRGTLFFEIVRILKEKKPK--FFLLENVKGLVSHDKGRTFKVIIETLEELGY  133 (315)
T ss_pred             cCCCcccchhcccCCCCCchhhHHHHHHHHHhhcCCC--EEEeeccHHHHhcccchHHHHHHHHHHhCCC
Confidence            87744 3332221110 01123444444444   553  444444443        34555666665543

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.92  E-value=0.087  Score=42.40  Aligned_cols=111  Identities=14%  Similarity=0.131  Sum_probs=70.2

Q ss_pred             ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||+|-|- |..++.+|..-|+..|.-.|=+...++-.++.....   ...+++.+.+++-+... -........||.
T Consensus        31 ~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n---~~s~~tsc~vlrw~~~~-aqsq~eq~tFDi  106 (201)
T KOG3201|consen   31 RRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSN---MASSLTSCCVLRWLIWG-AQSQQEQHTFDI  106 (201)
T ss_pred             HHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcc---cccccceehhhHHHHhh-hHHHHhhCcccE
Confidence            4799999995 666678888889999999999998887665543221   11244445454444321 111122457888


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |..-  |=.+-+.|+      ..+++.+.+.|+|.|.-.+-++-
T Consensus       107 IlaA--DClFfdE~h------~sLvdtIk~lL~p~g~Al~fsPR  142 (201)
T KOG3201|consen  107 ILAA--DCLFFDEHH------ESLVDTIKSLLRPSGRALLFSPR  142 (201)
T ss_pred             EEec--cchhHHHHH------HHHHHHHHHHhCcccceeEecCc
Confidence            8742  111111222      36999999999999987776653

>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=91.87  E-value=0.5  Score=38.81  Aligned_cols=109  Identities=17%  Similarity=0.218  Sum_probs=52.9

Q ss_pred             EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC----------cccEEEEeCCcccccCccC
Q 025470           69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ----------YQNISVVRTNSMKYIPNYF  138 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~----------~~nv~~~~~da~~~l~~~~  138 (252)
                      |-=||.|.=.+..+++-...+.+|+|+|+++..++..++-..   ...+.+          ..|+++. .|..+.+    
T Consensus         3 I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~---p~~E~~l~~ll~~~~~~~~l~~t-~~~~~ai----   74 (185)
T PF03721_consen    3 IAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGEL---PIYEPGLDELLKENVSAGRLRAT-TDIEEAI----   74 (185)
T ss_dssp             EEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSS---SS-CTTHHHHHHHHHHTTSEEEE-SEHHHHH----
T ss_pred             EEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccc---cccccchhhhhccccccccchhh-hhhhhhh----
Confidence            444677764444444444447899999999987765432100   000011          1233332 2222111    


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                        ...|.+++..|.|........-.. -...++.+...|++|-.+++.|=
T Consensus        75 --~~adv~~I~VpTP~~~~~~~Dls~-v~~a~~~i~~~l~~~~lvV~~ST  121 (185)
T PF03721_consen   75 --KDADVVFICVPTPSDEDGSPDLSY-VESAIESIAPVLRPGDLVVIEST  121 (185)
T ss_dssp             --HH-SEEEE----EBETTTSBETHH-HHHHHHHHHHHHCSCEEEEESSS
T ss_pred             --hccceEEEecCCCccccCCccHHH-HHHHHHHHHHHHhhcceEEEccE
Confidence              246899999888875532211111 13578888999999888888653

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=91.52  E-value=2.2  Score=40.64  Aligned_cols=116  Identities=16%  Similarity=0.251  Sum_probs=70.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHC----CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLF----PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~----p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ..+.|.-||+|.++.......    ....++|-|....+...|..+....    ....+++....+|.... +.......
T Consensus       219 ~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~----~~~~~t~~~~~~dtl~~-~d~~~~~~  293 (501)
T TIGR00497       219 DDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILH----NIDYANFNIINADTLTT-KEWENENG  293 (501)
T ss_pred             CcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHc----CCCccccCcccCCcCCC-cccccccc
Confidence            479999999999998765432    1246899999999988777654221    01112344444553321 12333456


Q ss_pred             ccEEEEeCCCC--cccc-----cccccc----------ccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDP--HFKE-----KNHRRR----------VISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP--~~k~-----~h~krr----------~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|..|.|..  |...     ....+.          -....++..+..+|++||+..++-
T Consensus       294 ~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~  355 (501)
T TIGR00497       294 FEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC  355 (501)
T ss_pred             CCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence            88888887643  3211     000111          123568889999999999866553

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=91.27  E-value=0.36  Score=43.92  Aligned_cols=41  Identities=24%  Similarity=0.270  Sum_probs=35.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~  107 (252)
                      -+.++|+|.|.|.++..|+-.+ +..|.|||-|....+.|++
T Consensus       154 i~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~r  194 (476)
T KOG2651|consen  154 IDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQR  194 (476)
T ss_pred             CCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHH
Confidence            4579999999999999999887 6789999999887777664

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=90.90  E-value=1.8  Score=38.73  Aligned_cols=90  Identities=13%  Similarity=0.122  Sum_probs=53.3

Q ss_pred             CceEEEEcCcc-cHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=+|||. |.+++.+|++ .....++++|.++..++.|.. +         +..  ..+ .+    +..   ...+
T Consensus       164 g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---------~~~--~~~-~~----~~~---~~g~  223 (341)
T cd08237         164 RNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---------DET--YLI-DD----IPE---DLAV  223 (341)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---------Cce--eeh-hh----hhh---ccCC
Confidence            56788899976 4455677775 455689999999877665532 1         111  000 01    110   1135


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+-.-..+           ..+..+....+.|++||++++.
T Consensus       224 d~viD~~G~~-----------~~~~~~~~~~~~l~~~G~iv~~  255 (341)
T cd08237         224 DHAFECVGGR-----------GSQSAINQIIDYIRPQGTIGLM  255 (341)
T ss_pred             cEEEECCCCC-----------ccHHHHHHHHHhCcCCcEEEEE
Confidence            6665332211           0124788888999999998875

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=90.78  E-value=0.27  Score=42.35  Aligned_cols=43  Identities=26%  Similarity=0.415  Sum_probs=32.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHC----C----CCeEEEEecCHhHHHHHHHHH
Q 025470           67 IQFADIGCGFGGLLISLSTLF----P----EVLMIGMELRDKVTEYVKERI  109 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~----p----~~~~iGiDis~~~i~~a~~~~  109 (252)
                      ..|+|+|.|+|.++..+....    |    ...++-||+|+.+.+.-++++
T Consensus        20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L   70 (252)
T PF02636_consen   20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL   70 (252)
T ss_dssp             EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred             cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence            589999999999999888752    2    358999999998876655544

; PDB: 4F3N_A 1ZKD_B.

>cd08230 glucose_DH Glucose dehydrogenase

Probab=90.74  E-value=2.2  Score=38.18  Aligned_cols=92  Identities=17%  Similarity=0.097  Sum_probs=54.2

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEec---CHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMEL---RDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDi---s~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ...||=+|||. |.+++.+|+.. +..+++++.   ++...+.+.+          .+...+.....+..+ .   ....
T Consensus       173 g~~vlI~G~G~vG~~a~q~ak~~-G~~vi~~~~~~~~~~~~~~~~~----------~Ga~~v~~~~~~~~~-~---~~~~  237 (355)
T cd08230         173 PRRALVLGAGPIGLLAALLLRLR-GFEVYVLNRRDPPDPKADIVEE----------LGATYVNSSKTPVAE-V---KLVG  237 (355)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCCHHHHHHHHH----------cCCEEecCCccchhh-h---hhcC
Confidence            45778889886 77778888876 458999987   5555544432          133322111111110 0   0123


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+|.|+-....              ...+....+.|++||++++.
T Consensus       238 ~~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~  268 (355)
T cd08230         238 EFDLIIEATGV--------------PPLAFEALPALAPNGVVILF  268 (355)
T ss_pred             CCCEEEECcCC--------------HHHHHHHHHHccCCcEEEEE
Confidence            46766654322              13778889999999999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=90.67  E-value=0.43  Score=41.46  Aligned_cols=35  Identities=14%  Similarity=0.244  Sum_probs=30.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-----CCCeEEEEecCHh
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-----PEVLMIGMELRDK  100 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-----p~~~~iGiDis~~  100 (252)
                      ...++|.|||.|.++..+++..     +...++-||....
T Consensus        19 ~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~   58 (259)
T PF05206_consen   19 DSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASN   58 (259)
T ss_pred             CCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcc
Confidence            4489999999999999999997     5678999998654

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.60  E-value=0.59  Score=37.16  Aligned_cols=60  Identities=22%  Similarity=0.319  Sum_probs=43.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM  131 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~  131 (252)
                      ....+|||+|.|.+.++.|+.. -..-+|+|+++-.+.+++  +...|.   .-....+|.+-|+.
T Consensus        73 ~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysr--l~a~R~---g~~k~trf~Rkdlw  132 (199)
T KOG4058|consen   73 KGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSR--LHAWRA---GCAKSTRFRRKDLW  132 (199)
T ss_pred             CCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHH--HHHHHH---hcccchhhhhhhhh
Confidence            4589999999999999999885 345689999999887654  344432   12245778887764

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=90.36  E-value=2  Score=38.51  Aligned_cols=97  Identities=18%  Similarity=0.223  Sum_probs=55.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=+|||. |..++.+|+......++++|.++...+.+.+    +      +.+.+ .....+..+.+........+
T Consensus       177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~----~------Ga~~~i~~~~~~~~~~i~~~~~~~g~  246 (358)
T TIGR03451       177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE----F------GATHTVNSSGTDPVEAIRALTGGFGA  246 (358)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----c------CCceEEcCCCcCHHHHHHHHhCCCCC
Confidence            45677779875 6777888887643359999999887666532    1      33211 11111211112111222347


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+-....              ...+....+.|++||++++.
T Consensus       247 d~vid~~g~--------------~~~~~~~~~~~~~~G~iv~~  275 (358)
T TIGR03451       247 DVVIDAVGR--------------PETYKQAFYARDLAGTVVLV  275 (358)
T ss_pred             CEEEECCCC--------------HHHHHHHHHHhccCCEEEEE
Confidence            776643221              13677788899999999875

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=90.35  E-value=2.2  Score=36.94  Aligned_cols=97  Identities=8%  Similarity=0.002  Sum_probs=55.1

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||=+|+|. |..++.+|+......++++|.++...+.+++    +      +.+.+-- ..+..+.+........+|
T Consensus       121 g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~----~------Ga~~~i~-~~~~~~~~~~~~~~~g~d  189 (280)
T TIGR03366       121 GRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS----F------GATALAE-PEVLAERQGGLQNGRGVD  189 (280)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----c------CCcEecC-chhhHHHHHHHhCCCCCC
Confidence            45677788865 6666777777633348999998877665543    1      2221110 011111111111223467


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++-....              ...++.+.+.|+++|++++..
T Consensus       190 ~vid~~G~--------------~~~~~~~~~~l~~~G~iv~~G  218 (280)
T TIGR03366       190 VALEFSGA--------------TAAVRACLESLDVGGTAVLAG  218 (280)
T ss_pred             EEEECCCC--------------hHHHHHHHHHhcCCCEEEEec
Confidence            76643222              247888899999999998754

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function

Probab=90.19  E-value=0.4  Score=36.88  Aligned_cols=74  Identities=16%  Similarity=0.255  Sum_probs=45.7

Q ss_pred             ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       121 ~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      -++.+..+|+.+.++..  +..+|.||+.--.|-   +.  ..+=+.++++.+++.++|||++..-|-    ...+...+
T Consensus        31 v~L~L~~gDa~~~l~~l--~~~~Da~ylDgFsP~---~n--PelWs~e~~~~l~~~~~~~~~l~Tys~----a~~Vr~~L   99 (124)
T PF05430_consen   31 VTLTLWFGDAREMLPQL--DARFDAWYLDGFSPA---KN--PELWSEELFKKLARLSKPGGTLATYSS----AGAVRRAL   99 (124)
T ss_dssp             EEEEEEES-HHHHHHHB---T-EEEEEE-SS-TT---TS--GGGSSHHHHHHHHHHEEEEEEEEES------BHHHHHHH
T ss_pred             EEEEEEEcHHHHHHHhC--cccCCEEEecCCCCc---CC--cccCCHHHHHHHHHHhCCCcEEEEeec----hHHHHHHH
Confidence            36888999998766643  378999998521111   11  113356899999999999999876553    33456666


Q ss_pred             hcCCC
Q 025470          201 ENHPM  205 (252)
Q Consensus       201 ~~~~~  205 (252)
                      ...++
T Consensus       100 ~~aGF  104 (124)
T PF05430_consen  100 QQAGF  104 (124)
T ss_dssp             HHCTE
T ss_pred             HHcCC
Confidence            66653

; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.

>COG4121 Uncharacterized conserved protein [Function unknown]

Probab=90.01  E-value=1.2  Score=38.38  Aligned_cols=129  Identities=18%  Similarity=0.103  Sum_probs=74.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC------------CeEEEEecCHhHHHHHH--HHHH-------HHh-----------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE------------VLMIGMELRDKVTEYVK--ERIL-------ALR-----------  113 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~------------~~~iGiDis~~~i~~a~--~~~~-------~~~-----------  113 (252)
                      ..+|+|+|.|+|.-.+.+-+.+++            ..++.+|.++.....+.  ....       ++.           
T Consensus        59 ~~~i~E~gfgtglnfl~~~~~~~~~~~~~~~~~~~~l~~~S~e~~P~~~~~l~~l~~~pel~~~~~~l~~~~~~~~~~~~  138 (252)
T COG4121          59 ILQILEIGFGTGLNFLTAHLAIGDARQAKLEVVLLDLKFDSIELDPFSPPKCPALWTVPFLCHLADALAPTGPLATYGCA  138 (252)
T ss_pred             ceeehhhhcccchhHHHHHhhhhhhhhccccccccccceEEEEeCCCChhhhHHHhhhhhHHHHHHHHhhccCcccchhH
Confidence            458999999999988777665433            34788998764321111  0000       000           


Q ss_pred             hcCCCCcccEEEEeCCcccccCccCCCC--cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          114 VSNPGQYQNISVVRTNSMKYIPNYFEKG--QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       114 ~~~~~~~~nv~~~~~da~~~l~~~~~~~--s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      .+...+..++.++.+|+.+.++.. +..  .+|..++.--.|-   +..  .+=+.+++..+++..++||++.--|    
T Consensus       139 r~~~~g~~~l~l~~gd~~~~~p~~-~~~~~~~dAwflDgFsP~---kNP--~mW~~e~l~~~a~~~~~~~~l~t~s----  208 (252)
T COG4121         139 AAVRHGLLLLGLVIGDAGDGIPPV-PRRRPGTDAWFLDGFRPV---KNP--EMWEDELLNLMARIPYRDPTLATFA----  208 (252)
T ss_pred             HhhhcchheeeeeeeehhhcCCcc-cccccCccEEecCCcccc---CCh--hhccHHHHHHHHhhcCCCCceechH----
Confidence            001135667889999998766543 111  5677776421111   000  1125689999999999999986422    


Q ss_pred             HHHHHHHHHhcCC
Q 025470          192 LGDWMRSCLENHP  204 (252)
Q Consensus       192 ~~~~~~~~~~~~~  204 (252)
                      -+-.....+.+.+
T Consensus       209 sA~~vRr~L~~aG  221 (252)
T COG4121         209 AAIAVRRRLEQAG  221 (252)
T ss_pred             HHHHHHHHHHHcC
Confidence            2333444555544

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=89.82  E-value=0.21  Score=45.99  Aligned_cols=66  Identities=11%  Similarity=0.165  Sum_probs=54.3

Q ss_pred             CCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc
Q 025470           63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI  134 (252)
Q Consensus        63 ~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l  134 (252)
                      .+++.+|-|+-||.|-+++.+++.  ++.+++-|.+++++++...++...    .-...++.+...||.+++
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK--~crV~aNDLNpesik~Lk~ni~lN----kv~~~~iei~Nmda~~Fl  312 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK--GCRVYANDLNPESIKWLKANIKLN----KVDPSAIEIFNMDAKDFL  312 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc--CcEEEecCCCHHHHHHHHHhcccc----ccchhheeeecccHHHHh
Confidence            345679999999999999999999  599999999999999988776432    123446999999998776

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=89.14  E-value=3.7  Score=34.43  Aligned_cols=97  Identities=19%  Similarity=0.151  Sum_probs=58.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||-+|+|. |..++.+|+.. +..+++++.++...+.+..    .      +...+ .....+....+. ......+
T Consensus       135 ~~~vli~g~~~~G~~~~~~a~~~-g~~v~~~~~~~~~~~~~~~----~------g~~~~~~~~~~~~~~~~~-~~~~~~~  202 (271)
T cd05188         135 GDTVLVLGAGGVGLLAAQLAKAA-GARVIVTDRSDEKLELAKE----L------GADHVIDYKEEDLEEELR-LTGGGGA  202 (271)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH----h------CCceeccCCcCCHHHHHH-HhcCCCC
Confidence            55899999996 77778888876 4789999999876555432    1      21111 000111111111 1223568


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |.++-+...+              ..+..+.+.|+++|.++....
T Consensus       203 d~vi~~~~~~--------------~~~~~~~~~l~~~G~~v~~~~  233 (271)
T cd05188         203 DVVIDAVGGP--------------ETLAQALRLLRPGGRIVVVGG  233 (271)
T ss_pred             CEEEECCCCH--------------HHHHHHHHhcccCCEEEEEcc
Confidence            8887654331              367778889999999987653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=88.94  E-value=3.7  Score=36.65  Aligned_cols=40  Identities=18%  Similarity=0.324  Sum_probs=31.5

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVK  106 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~  106 (252)
                      ...||=+|||. |..++.+|+.. +..++++|.++..++.+.
T Consensus       167 g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~  207 (349)
T TIGR03201       167 GDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMK  207 (349)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHH
Confidence            45788899977 77778888886 457999999998776653

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=88.91  E-value=0.51  Score=42.06  Aligned_cols=57  Identities=21%  Similarity=0.214  Sum_probs=42.4

Q ss_pred             EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc
Q 025470           69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS  130 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da  130 (252)
                      =+|||+|.-.+--.+..+.-+..++|+|++...+..|.+++.+.     +..+.+.+++...
T Consensus       106 GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn-----~lss~ikvV~~~~  162 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQN-----NLSSLIKVVKVEP  162 (419)
T ss_pred             eeeccCchhhhHHhhhchhccceeeeeeccccccchhhcccccc-----ccccceeeEEecc
Confidence            48999998776666655555688999999999999999887553     2334577777654

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=88.79  E-value=6.4  Score=35.24  Aligned_cols=125  Identities=14%  Similarity=0.142  Sum_probs=73.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...++|+-||.|.+...+.... -..+.++|+++.+++.-..+           .+.-.++..|+.+.....+....+|.
T Consensus         3 ~~~~idLFsG~GG~~lGf~~ag-f~~~~a~Eid~~a~~ty~~n-----------~~~~~~~~~di~~~~~~~~~~~~~Dv   70 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAG-FEIVFANEIDPPAVATYKAN-----------FPHGDIILGDIKELDGEALRKSDVDV   70 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcC-CeEEEEEecCHHHHHHHHHh-----------CCCCceeechHhhcChhhccccCCCE
Confidence            4589999999999998888886 33578999999876543322           22255666776643332232227899


Q ss_pred             EEEeCCCCcccccccc------ccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH-------HHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHR------RRVISPHLLDEYAYVLGVGGIIYTITDVEELGD-------WMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~k------rr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~-------~~~~~~~~~~~  205 (252)
                      ++--+|..-+..-...      |.-+.- -+.++...++|  .+++.-+++.+..       .+.+.|.+.++
T Consensus        71 ligGpPCQ~FS~aG~r~~~~D~R~~L~~-~~~r~I~~~~P--~~fv~ENV~gl~~~~~~~~~~i~~~L~~~GY  140 (328)
T COG0270          71 LIGGPPCQDFSIAGKRRGYDDPRGSLFL-EFIRLIEQLRP--KFFVLENVKGLLSSKGQTFDEIKKELEELGY  140 (328)
T ss_pred             EEeCCCCcchhhcCcccCCcCccceeeH-HHHHHHHhhCC--CEEEEecCchHHhcCchHHHHHHHHHHHcCC
Confidence            9988886654422111      111111 22334445567  5555555554443       34455555554

>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional

Probab=88.72  E-value=3.4  Score=40.31  Aligned_cols=102  Identities=9%  Similarity=-0.011  Sum_probs=64.2

Q ss_pred             eEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCcc
Q 025470           68 QFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQL  143 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s~  143 (252)
                      .|+=+|+  |.++..+++.  ..+..++.+|.+++.++.+++             ....++.+|+.+.  +. ...-...
T Consensus       402 ~vII~G~--Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~-------------~g~~v~~GDat~~~~L~-~agi~~A  465 (601)
T PRK03659        402 QVIIVGF--GRFGQVIGRLLMANKMRITVLERDISAVNLMRK-------------YGYKVYYGDATQLELLR-AAGAEKA  465 (601)
T ss_pred             CEEEecC--chHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh-------------CCCeEEEeeCCCHHHHH-hcCCccC
Confidence            4555555  5566666654  236689999999988765532             1356888998641  11 1123467


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      +.+++..+|+-..           ..+-...+.+.|...++..+.+++-.+.+
T Consensus       466 ~~vv~~~~d~~~n-----------~~i~~~~r~~~p~~~IiaRa~~~~~~~~L  507 (601)
T PRK03659        466 EAIVITCNEPEDT-----------MKIVELCQQHFPHLHILARARGRVEAHEL  507 (601)
T ss_pred             CEEEEEeCCHHHH-----------HHHHHHHHHHCCCCeEEEEeCCHHHHHHH
Confidence            8888888776421           24445566778999998888776554433

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=88.38  E-value=3.9  Score=36.39  Aligned_cols=97  Identities=10%  Similarity=0.130  Sum_probs=54.0

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=.|||. |..++.+|+......+++++.+++..+.+.+ +         +...+ .....+.. .+........+
T Consensus       161 g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~-~---------Ga~~~i~~~~~~~~-~~~~~~~~~~~  229 (347)
T PRK10309        161 GKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKS-L---------GAMQTFNSREMSAP-QIQSVLRELRF  229 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH-c---------CCceEecCcccCHH-HHHHHhcCCCC
Confidence            34666668876 6666778887643347899998877665432 1         22211 00111111 12112223346


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.+++...-             ....+....+.|++||++++.
T Consensus       230 d~~v~d~~G-------------~~~~~~~~~~~l~~~G~iv~~  259 (347)
T PRK10309        230 DQLILETAG-------------VPQTVELAIEIAGPRAQLALV  259 (347)
T ss_pred             CeEEEECCC-------------CHHHHHHHHHHhhcCCEEEEE
Confidence            644433211             124788889999999999886

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=88.28  E-value=4.2  Score=35.94  Aligned_cols=96  Identities=11%  Similarity=0.018  Sum_probs=54.3

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~~~~~s  142 (252)
                      ...||=+|+|. |..++.+|+.. +.. +++++.+++..+.+.+    +      +.+.+- ....+ .+.+........
T Consensus       164 g~~vlV~G~G~vG~~~~~~ak~~-G~~~vi~~~~~~~~~~~~~~----~------ga~~~i~~~~~~-~~~~~~~~~~~~  231 (339)
T cd08239         164 RDTVLVVGAGPVGLGALMLARAL-GAEDVIGVDPSPERLELAKA----L------GADFVINSGQDD-VQEIRELTSGAG  231 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----h------CCCEEEcCCcch-HHHHHHHhCCCC
Confidence            44566678865 66667777776 455 9999998877665532    1      332111 10111 111211122235


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|+-....              ...+....+.|+++|++++..
T Consensus       232 ~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~g  262 (339)
T cd08239         232 ADVAIECSGN--------------TAARRLALEAVRPWGRLVLVG  262 (339)
T ss_pred             CCEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence            7777643322              136677788999999998753

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=88.09  E-value=7.9  Score=32.63  Aligned_cols=100  Identities=5%  Similarity=-0.000  Sum_probs=61.1

Q ss_pred             CceEEEEcCccc----HHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCccc-ccCccCC
Q 025470           66 KIQFADIGCGFG----GLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMK-YIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G----~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~-~l~~~~~  139 (252)
                      ...++|+.|+.|    .+++..|.++-+.+++.|-..+..+....+.+..      .++.+ +.|+.++..+ .++. + 
T Consensus        42 AkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~------~~~~~~vEfvvg~~~e~~~~~-~-  113 (218)
T PF07279_consen   42 AKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGE------AGLSDVVEFVVGEAPEEVMPG-L-  113 (218)
T ss_pred             ceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhh------ccccccceEEecCCHHHHHhh-c-
Confidence            458999977754    3344555556788999998887765444444433      25544 6999998543 3433 3 


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhc--CCcEEEEEeC
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLG--VGGIIYTITD  188 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lk--pgG~l~~~td  188 (252)
                       ..+|.+.+..-              ..++.+.+.+.++  |.|-+++..+
T Consensus       114 -~~iDF~vVDc~--------------~~d~~~~vl~~~~~~~~GaVVV~~N  149 (218)
T PF07279_consen  114 -KGIDFVVVDCK--------------REDFAARVLRAAKLSPRGAVVVCYN  149 (218)
T ss_pred             -cCCCEEEEeCC--------------chhHHHHHHHHhccCCCceEEEEec
Confidence             35787777541              1135545555555  5688777654

The function of this family is unknown.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=88.05  E-value=2.7  Score=40.08  Aligned_cols=100  Identities=18%  Similarity=0.188  Sum_probs=66.9

Q ss_pred             CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ..+|+=+|.|-|-+.-+..+.    ..-..+++||.+++++...+..  ..    ...-..|.++.+|... +.  -+..
T Consensus       368 ~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~--n~----~~W~~~Vtii~~DMR~-w~--ap~e  438 (649)
T KOG0822|consen  368 TTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNR--NF----ECWDNRVTIISSDMRK-WN--APRE  438 (649)
T ss_pred             eEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhh--ch----hhhcCeeEEEeccccc-cC--Cchh
Confidence            347889999999887544433    3356789999999988654431  11    1134569999999874 43  1125


Q ss_pred             cccEEEE----eCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          142 QLTKMFF----LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       142 s~d~i~~----~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      ..|.++.    .|-|--          ++++-|.-+.+.|||+|..+
T Consensus       439 q~DI~VSELLGSFGDNE----------LSPECLDG~q~fLkpdgIsI  475 (649)
T KOG0822|consen  439 QADIIVSELLGSFGDNE----------LSPECLDGAQKFLKPDGISI  475 (649)
T ss_pred             hccchHHHhhccccCcc----------CCHHHHHHHHhhcCCCceEc
Confidence            5565542    343432          56789999999999998764

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=87.99  E-value=3.4  Score=37.34  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=54.8

Q ss_pred             ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCccc
Q 025470           67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ..||=+|+|. |.+++.+|+......++++|.++...+.+.+    +      +.+.+ .....|..+.+.... .+.+|
T Consensus       193 ~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~----~------Ga~~~i~~~~~~~~~~i~~~~-~~g~d  261 (371)
T cd08281         193 QSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE----L------GATATVNAGDPNAVEQVRELT-GGGVD  261 (371)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH----c------CCceEeCCCchhHHHHHHHHh-CCCCC
Confidence            4555588875 6677778887633369999999887766542    1      33211 111112111121111 22467


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+-.-..              ...+....+.|+++|++++..
T Consensus       262 ~vid~~G~--------------~~~~~~~~~~l~~~G~iv~~G  290 (371)
T cd08281         262 YAFEMAGS--------------VPALETAYEITRRGGTTVTAG  290 (371)
T ss_pred             EEEECCCC--------------hHHHHHHHHHHhcCCEEEEEc
Confidence            76643221              147778889999999988753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=87.92  E-value=3.9  Score=35.93  Aligned_cols=84  Identities=21%  Similarity=0.220  Sum_probs=51.1

Q ss_pred             ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..+|=+|||. |.+++.+|+......++++|.++..++.|..            .   .++  |..+.     ....+|.
T Consensus       146 ~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~------------~---~~i--~~~~~-----~~~g~Dv  203 (308)
T TIGR01202       146 LPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG------------Y---EVL--DPEKD-----PRRDYRA  203 (308)
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh------------c---ccc--Chhhc-----cCCCCCE
Confidence            3577779876 7777888888754457788888765543321            0   011  11110     1234676


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |+-.-..              ...+..+.+.|++||++.+.
T Consensus       204 vid~~G~--------------~~~~~~~~~~l~~~G~iv~~  230 (308)
T TIGR01202       204 IYDASGD--------------PSLIDTLVRRLAKGGEIVLA  230 (308)
T ss_pred             EEECCCC--------------HHHHHHHHHhhhcCcEEEEE
Confidence            6644322              13678888999999999875

>PLN02827 Alcohol dehydrogenase-like

Probab=87.06  E-value=4.8  Score=36.61  Aligned_cols=96  Identities=16%  Similarity=0.118  Sum_probs=54.2

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~  141 (252)
                      ...||=+|+|. |..++.+|+......++++|.++...+.|.+    +      +.+.+--...   +..+.+.... .+
T Consensus       194 g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~----l------Ga~~~i~~~~~~~~~~~~v~~~~-~~  262 (378)
T PLN02827        194 GSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT----F------GVTDFINPNDLSEPIQQVIKRMT-GG  262 (378)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----c------CCcEEEcccccchHHHHHHHHHh-CC
Confidence            45777778865 6666778887643368999998876665532    1      3322110010   1111121111 22


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~  186 (252)
                      .+|.|+-.--.              ...+....+.|++| |++++.
T Consensus       263 g~d~vid~~G~--------------~~~~~~~l~~l~~g~G~iv~~  294 (378)
T PLN02827        263 GADYSFECVGD--------------TGIATTALQSCSDGWGLTVTL  294 (378)
T ss_pred             CCCEEEECCCC--------------hHHHHHHHHhhccCCCEEEEE
Confidence            46766532211              13677888899998 999764

>PLN02353 probable UDP-glucose 6-dehydrogenase

Probab=87.01  E-value=3.2  Score=39.24  Aligned_cols=111  Identities=12%  Similarity=0.105  Sum_probs=59.6

Q ss_pred             eEEEEcCcccHHHHH--HHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc---------EEEEeCCcccccCc
Q 025470           68 QFADIGCGFGGLLIS--LSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN---------ISVVRTNSMKYIPN  136 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~--lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n---------v~~~~~da~~~l~~  136 (252)
                      .|.=||+|......+  ||...++.+|+|+|++++.++..++.....   .+.++..         +.+ ..|..+.   
T Consensus         3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~---~e~gl~ell~~~~~~~l~~-t~~~~~~---   75 (473)
T PLN02353          3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPI---YEPGLDEVVKQCRGKNLFF-STDVEKH---   75 (473)
T ss_pred             EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCcc---CCCCHHHHHHHhhcCCEEE-EcCHHHH---
Confidence            366678888766665  444445688999999998776543211000   0111111         111 1111100   


Q ss_pred             cCCCCcccEEEEeCCCCccccc---cccccc-cCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          137 YFEKGQLTKMFFLFPDPHFKEK---NHRRRV-ISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       137 ~~~~~s~d~i~~~fpdP~~k~~---h~krr~-~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                         -...|.+++..|.|-....   ...-.+ --...++.+.+.|++|-.+++.|=
T Consensus        76 ---i~~advi~I~V~TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~ST  128 (473)
T PLN02353         76 ---VAEADIVFVSVNTPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKST  128 (473)
T ss_pred             ---HhcCCEEEEEeCCCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence               1346888888888863221   000000 113577778888888777777653

>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]

Probab=86.93  E-value=2.9  Score=38.46  Aligned_cols=119  Identities=14%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc---------cCcc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY---------IPNY  137 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~---------l~~~  137 (252)
                      .+|-=||=|.=.+-.+.+-.-.+..++|+||++..++..++           |.  ..+..-+..+.         |.-.
T Consensus        10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~-----------G~--~~i~e~~~~~~v~~~v~~g~lraT   76 (436)
T COG0677          10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNR-----------GE--SYIEEPDLDEVVKEAVESGKLRAT   76 (436)
T ss_pred             eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhC-----------Cc--ceeecCcHHHHHHHHHhcCCceEe
Confidence            35666777765444444444447789999999987765432           21  12222222110         1100


Q ss_pred             CC---CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-----hHHHHHHHHH
Q 025470          138 FE---KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-----EELGDWMRSC  199 (252)
Q Consensus       138 ~~---~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-----~~~~~~~~~~  199 (252)
                      ..   -...|.+.+.-|.|.-+. +......-....+.++.+|++|-.+++-+=.     ++...++++.
T Consensus        77 td~~~l~~~dv~iI~VPTPl~~~-~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~  145 (436)
T COG0677          77 TDPEELKECDVFIICVPTPLKKY-REPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEE  145 (436)
T ss_pred             cChhhcccCCEEEEEecCCcCCC-CCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhh
Confidence            11   126788899999998653 2111111234677888999999999886432     3455555444

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=86.58  E-value=4.4  Score=35.65  Aligned_cols=112  Identities=12%  Similarity=0.078  Sum_probs=75.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|+=+| -.-.+++++|..+-...+..|||++..+....+-+.+.      ++.|+..+.-|+...+++.+ ...||.
T Consensus       153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~------g~~~ie~~~~Dlr~plpe~~-~~kFDv  224 (354)
T COG1568         153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEEL------GYNNIEAFVFDLRNPLPEDL-KRKFDV  224 (354)
T ss_pred             CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHh------CccchhheeehhcccChHHH-HhhCCe
Confidence            34688889 55677777777765668999999999999888766655      89999999999876555433 356777


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCC---cEEEEEeCchHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG---GIIYTITDVEELGD  194 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg---G~l~~~td~~~~~~  194 (252)
                      ++...|.-..   .      -..|+..=-..||--   |.+.+.+-......
T Consensus       225 fiTDPpeTi~---a------lk~FlgRGI~tLkg~~~aGyfgiT~ressidk  267 (354)
T COG1568         225 FITDPPETIK---A------LKLFLGRGIATLKGEGCAGYFGITRRESSIDK  267 (354)
T ss_pred             eecCchhhHH---H------HHHHHhccHHHhcCCCccceEeeeeccccHHH
Confidence            6643332111   0      113666666677754   88988765443333

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=86.36  E-value=1.5  Score=34.20  Aligned_cols=38  Identities=18%  Similarity=0.186  Sum_probs=25.8

Q ss_pred             EEcCccc--HHHHHHH--HHCCCCeEEEEecCHhHHHHHHHH
Q 025470           71 DIGCGFG--GLLISLS--TLFPEVLMIGMELRDKVTEYVKER  108 (252)
Q Consensus        71 DIGcG~G--~~~~~lA--~~~p~~~~iGiDis~~~i~~a~~~  108 (252)
                      |||++.|  ..+..++  ...+...++++|.++..++..+.+
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  6666654  457888999999999988887776

; PDB: 2PY6_A.

>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional

Probab=86.34  E-value=2.5  Score=39.21  Aligned_cols=127  Identities=13%  Similarity=0.159  Sum_probs=61.7

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE--EEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS--VVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~--~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|-=||.|.-...++.+-...+..++|+|+++..++..+...  . .....+++.+-  .+...... ...  .....|.
T Consensus         5 kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~--~-~~~e~~l~~~l~~~~~~g~l~-~~~--~~~~aDv   78 (415)
T PRK11064          5 TISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGE--I-HIVEPDLDMVVKTAVEGGYLR-ATT--TPEPADA   78 (415)
T ss_pred             EEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCC--C-CcCCCCHHHHHHHHhhcCcee-eec--ccccCCE
Confidence            466778887555444443333678999999998765421100  0 00000110000  00000000 000  1125789


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC-chHHHHHHHHHHh
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD-VEELGDWMRSCLE  201 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td-~~~~~~~~~~~~~  201 (252)
                      |++..|+|........-.. -...++.+...|++|-.+++.|= .....+.+...+.
T Consensus        79 vii~vptp~~~~~~~dl~~-v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~  134 (415)
T PRK11064         79 FLIAVPTPFKGDHEPDLTY-VEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLA  134 (415)
T ss_pred             EEEEcCCCCCCCCCcChHH-HHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHH
Confidence            9999998853221111011 12356778888888887776543 3344444444443

>PLN02740 Alcohol dehydrogenase-like

Probab=86.20  E-value=6  Score=35.88  Aligned_cols=95  Identities=17%  Similarity=0.131  Sum_probs=55.7

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~~  139 (252)
                      ...||=+|||. |..++.+|+......++++|.+++.++.+.+    +      +.+.  ++..     +..+.+.... 
T Consensus       199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~------Ga~~--~i~~~~~~~~~~~~v~~~~-  265 (381)
T PLN02740        199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----M------GITD--FINPKDSDKPVHERIREMT-  265 (381)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----c------CCcE--EEecccccchHHHHHHHHh-
Confidence            45777789876 6667778887643369999999887766642    1      3322  2211     1111121111 


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~t  187 (252)
                      .+.+|.|+-.--.              ...+......+++| |++++..
T Consensus       266 ~~g~dvvid~~G~--------------~~~~~~a~~~~~~g~G~~v~~G  300 (381)
T PLN02740        266 GGGVDYSFECAGN--------------VEVLREAFLSTHDGWGLTVLLG  300 (381)
T ss_pred             CCCCCEEEECCCC--------------hHHHHHHHHhhhcCCCEEEEEc
Confidence            2257766543222              24777778888887 8887653

>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.08  E-value=1.1  Score=36.00  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|..|-||||.=       +-+|+...+-++-++                      .|.+ .++|.  ....|.++|+|.
T Consensus         3 ~p~kv~ig~G~~-------r~npgWi~~d~ed~~----------------------~vdl-vc~As--~e~~F~dns~d~   50 (185)
T COG4627           3 QPEKVKIGAGGK-------RVNPGWIITDVEDRP----------------------EVDL-VCRAS--NESMFEDNSVDA   50 (185)
T ss_pred             CceEEEEecccc-------ccCCCceeeehhccc----------------------ccch-hhhhh--hhccCCCcchHH
Confidence            457889999974       335676444333222                      2333 23443  224588899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC  199 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~  199 (252)
                      |+.-.-  |   .|.-- ---..++++++++|||||.|.++..+-.+..+.-..
T Consensus        51 iyaeHv--l---EHlt~-~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~   98 (185)
T COG4627          51 IYAEHV--L---EHLTY-DEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQH   98 (185)
T ss_pred             HHHHHH--H---HHHhH-HHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhh
Confidence            874210  0   00000 001258999999999999999999887777666555

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=86.03  E-value=6.3  Score=34.75  Aligned_cols=97  Identities=15%  Similarity=0.144  Sum_probs=54.3

Q ss_pred             CceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||-.|+| .|..++.+|+......+++++.+....+.+.+    .      +...+ .....+..+.+........+
T Consensus       168 ~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~----~------g~~~vi~~~~~~~~~~i~~~~~~~~~  237 (347)
T cd05278         168 GSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE----A------GATDIINPKNGDIVEQILELTGGRGV  237 (347)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH----h------CCcEEEcCCcchHHHHHHHHcCCCCC
Confidence            3456667876 37788888888643478888887765544332    1      21111 11111111112112233567


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.++-....              ...+....+.|+++|+++..
T Consensus       238 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~  266 (347)
T cd05278         238 DCVIEAVGF--------------EETFEQAVKVVRPGGTIANV  266 (347)
T ss_pred             cEEEEccCC--------------HHHHHHHHHHhhcCCEEEEE
Confidence            776632211              14788889999999998764

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=85.98  E-value=6.6  Score=37.80  Aligned_cols=99  Identities=11%  Similarity=0.021  Sum_probs=61.6

Q ss_pred             eEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC---CCCc
Q 025470           68 QFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF---EKGQ  142 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~---~~~s  142 (252)
                      .++=+|||  .++..+|+.  ..+..++.||.+++.++.+++             .+...+.+|+.+.  +.+   .-+.
T Consensus       419 hiiI~G~G--~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-------------~g~~~i~GD~~~~--~~L~~a~i~~  481 (558)
T PRK10669        419 HALLVGYG--RVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-------------RGIRAVLGNAANE--EIMQLAHLDC  481 (558)
T ss_pred             CEEEECCC--hHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-------------CCCeEEEcCCCCH--HHHHhcCccc
Confidence            45556665  556666664  235689999999987655432             1477889998641  112   2246


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD  194 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~  194 (252)
                      .|.+.+..+|....           ..+-...+.+.|+..++...++++..+
T Consensus       482 a~~viv~~~~~~~~-----------~~iv~~~~~~~~~~~iiar~~~~~~~~  522 (558)
T PRK10669        482 ARWLLLTIPNGYEA-----------GEIVASAREKRPDIEIIARAHYDDEVA  522 (558)
T ss_pred             cCEEEEEcCChHHH-----------HHHHHHHHHHCCCCeEEEEECCHHHHH
Confidence            77788777765421           234444566778888888877655433

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=85.50  E-value=11  Score=33.55  Aligned_cols=88  Identities=13%  Similarity=0.052  Sum_probs=53.0

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||=.|+|. |..++.+|+.. +.++++++.+++..+.|++    +      +.+.+  +  |..+     ...+.+|
T Consensus       166 g~~VlV~G~g~iG~~a~~~a~~~-G~~vi~~~~~~~~~~~a~~----~------Ga~~v--i--~~~~-----~~~~~~d  225 (329)
T TIGR02822       166 GGRLGLYGFGGSAHLTAQVALAQ-GATVHVMTRGAAARRLALA----L------GAASA--G--GAYD-----TPPEPLD  225 (329)
T ss_pred             CCEEEEEcCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHH----h------CCcee--c--cccc-----cCcccce
Confidence            45788888764 56667777775 5679999999877665543    1      33322  1  1100     0112355


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++..-..              ...+....+.|++||++.+.-
T Consensus       226 ~~i~~~~~--------------~~~~~~~~~~l~~~G~~v~~G  254 (329)
T TIGR02822       226 AAILFAPA--------------GGLVPPALEALDRGGVLAVAG  254 (329)
T ss_pred             EEEECCCc--------------HHHHHHHHHhhCCCcEEEEEe
Confidence            54432211              137778889999999998743

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=85.32  E-value=9.8  Score=34.87  Aligned_cols=109  Identities=13%  Similarity=0.083  Sum_probs=56.7

Q ss_pred             eEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcccE
Q 025470           68 QFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~d~  145 (252)
                      .||=.|+|. |..++.+|+......++.+|.++..++.|.+    +      +...+.... .+..+.+........+|.
T Consensus       188 ~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~----~------Ga~~v~~~~~~~~~~~v~~~~~~~g~Dv  257 (393)
T TIGR02819       188 TVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS----F------GCETVDLSKDATLPEQIEQILGEPEVDC  257 (393)
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH----c------CCeEEecCCcccHHHHHHHHcCCCCCcE
Confidence            444488875 6667778887644456777888776665543    1      433111111 122111222122235777


Q ss_pred             EEEeCCCCccccccccccccC-HHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVIS-PHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~-~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ++-.--.|.... -+++.... ...+++...+|++||++++.-
T Consensus       258 vid~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G  299 (393)
T TIGR02819       258 AVDCVGFEARGH-GHDGKKEAPATVLNSLMEVTRVGGAIGIPG  299 (393)
T ss_pred             EEECCCCccccc-cccccccchHHHHHHHHHHhhCCCEEEEee
Confidence            764433321100 00011112 247888999999999998853

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]

Probab=85.22  E-value=7.1  Score=32.52  Aligned_cols=100  Identities=16%  Similarity=0.224  Sum_probs=59.2

Q ss_pred             CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-----cCc
Q 025470           66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-----IPN  136 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-----l~~  136 (252)
                      ..+|+|+|.-.|..++..|..    .....++|+||+-...+-+..           ..+.|.|++++-.+.     +. 
T Consensus        70 P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~-----------e~p~i~f~egss~dpai~eqi~-  137 (237)
T COG3510          70 PSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAR-----------EVPDILFIEGSSTDPAIAEQIR-  137 (237)
T ss_pred             CceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhh-----------cCCCeEEEeCCCCCHHHHHHHH-
Confidence            348999999999999888875    234689999998765433221           357899999885421     11 


Q ss_pred             cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          137 YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       137 ~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                       ...+....|++..-.-+    ++++-   -.-++.+.++|.-|-.+++
T Consensus       138 -~~~~~y~kIfvilDsdH----s~~hv---LAel~~~~pllsaG~Y~vV  178 (237)
T COG3510         138 -RLKNEYPKIFVILDSDH----SMEHV---LAELKLLAPLLSAGDYLVV  178 (237)
T ss_pred             -HHhcCCCcEEEEecCCc----hHHHH---HHHHHHhhhHhhcCceEEE
Confidence             11233445555431111    11111   1345566677777776654

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=85.03  E-value=8.8  Score=34.39  Aligned_cols=95  Identities=14%  Similarity=0.176  Sum_probs=56.8

Q ss_pred             CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-C-CcccccCccCCCC
Q 025470           66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-T-NSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~-da~~~l~~~~~~~  141 (252)
                      ...||=.|+  |.|.+++.+|+.. +..+++++.++...+.+.+.+         +.+.+--.. . +..+.+.... .+
T Consensus       159 g~~VlV~GaaG~vG~~aiqlAk~~-G~~Vi~~~~~~~k~~~~~~~l---------Ga~~vi~~~~~~~~~~~i~~~~-~~  227 (348)
T PLN03154        159 GDSVFVSAASGAVGQLVGQLAKLH-GCYVVGSAGSSQKVDLLKNKL---------GFDEAFNYKEEPDLDAALKRYF-PE  227 (348)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHHhc---------CCCEEEECCCcccHHHHHHHHC-CC
Confidence            457888887  4688888999886 567999998887655443211         333221111 1 2222222111 23


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+|.++-..               ....+....+.|++||++++.
T Consensus       228 gvD~v~d~v---------------G~~~~~~~~~~l~~~G~iv~~  257 (348)
T PLN03154        228 GIDIYFDNV---------------GGDMLDAALLNMKIHGRIAVC  257 (348)
T ss_pred             CcEEEEECC---------------CHHHHHHHHHHhccCCEEEEE
Confidence            567666322               123677888999999999864

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.95  E-value=2.2  Score=39.22  Aligned_cols=63  Identities=6%  Similarity=0.053  Sum_probs=48.3

Q ss_pred             CCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          118 GQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       118 ~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++++|+++++++.+.+.. .+++++|.+++.=-..|....      .....++++.+.++|||++++.+
T Consensus       272 ~~~drv~i~t~si~~~L~~-~~~~s~~~~vL~D~~Dwm~~~------~~~~~~~~l~~~~~pgaRV~~Rs  334 (380)
T PF11899_consen  272 ARLDRVRIHTDSIEEVLRR-LPPGSFDRFVLSDHMDWMDPE------QLNEEWQELARTARPGARVLWRS  334 (380)
T ss_pred             cCCCeEEEEeccHHHHHHh-CCCCCeeEEEecchhhhCCHH------HHHHHHHHHHHHhCCCCEEEEee
Confidence            3669999999999887753 678999999875333454332      12368899999999999999987

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=84.63  E-value=0.72  Score=40.78  Aligned_cols=75  Identities=12%  Similarity=0.054  Sum_probs=51.4

Q ss_pred             CceEEEEcCcccHHHH-HHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLI-SLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~-~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ..+|+|+=.|-|.|++ .+... ....|.++|+++..++..++++...     .-.....++.+|-.    ..-+....|
T Consensus       195 ~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N-----~V~~r~~i~~gd~R----~~~~~~~Ad  264 (351)
T KOG1227|consen  195 GEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEAN-----NVMDRCRITEGDNR----NPKPRLRAD  264 (351)
T ss_pred             cchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhc-----chHHHHHhhhcccc----ccCccccch
Confidence            3689999999999999 55555 4668999999999998776655332     11223344455533    123467899


Q ss_pred             EEEEeC
Q 025470          145 KMFFLF  150 (252)
Q Consensus       145 ~i~~~f  150 (252)
                      .|.+-.
T Consensus       265 rVnLGL  270 (351)
T KOG1227|consen  265 RVNLGL  270 (351)
T ss_pred             heeecc
Confidence            998753

>PRK10458 DNA cytosine methylase; Provisional

Probab=84.54  E-value=22  Score=33.61  Aligned_cols=39  Identities=15%  Similarity=0.250  Sum_probs=30.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYV  105 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a  105 (252)
                      .-.++|+=||.|.+...+-... ...+.++|+++.+.+.-
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG-~~~v~a~Eid~~A~~TY  126 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIG-GQCVFTSEWNKHAVRTY  126 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcC-CEEEEEEechHHHHHHH
Confidence            3489999999999999987763 34678999999765443

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=84.54  E-value=8.2  Score=34.00  Aligned_cols=97  Identities=14%  Similarity=0.169  Sum_probs=57.4

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~  143 (252)
                      +..||-.|+|. |..++.+|+.. +.+++++..+++..+.+++    .      +.+.+ .....+..+.+........+
T Consensus       160 g~~vLI~g~g~vG~~a~~lA~~~-g~~v~~~~~s~~~~~~~~~----~------g~~~v~~~~~~~~~~~l~~~~~~~~v  228 (337)
T cd08261         160 GDTVLVVGAGPIGLGVIQVAKAR-GARVIVVDIDDERLEFARE----L------GADDTINVGDEDVAARLRELTDGEGA  228 (337)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCeEEEECCCHHHHHHHHH----h------CCCEEecCcccCHHHHHHHHhCCCCC
Confidence            44677779875 78888888885 6789999888776554422    1      22221 11111211122222233457


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.++-..-              ....+..+.+.|+++|+++...
T Consensus       229 d~vld~~g--------------~~~~~~~~~~~l~~~G~~i~~g  258 (337)
T cd08261         229 DVVIDATG--------------NPASMEEAVELVAHGGRVVLVG  258 (337)
T ss_pred             CEEEECCC--------------CHHHHHHHHHHHhcCCEEEEEc
Confidence            77764321              1247888899999999988653

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=84.36  E-value=3.1  Score=37.83  Aligned_cols=44  Identities=23%  Similarity=0.351  Sum_probs=34.8

Q ss_pred             eEEEEcCcccHHHHHHHHH----CC----CCeEEEEecCHhHHHHHHHHHHH
Q 025470           68 QFADIGCGFGGLLISLSTL----FP----EVLMIGMELRDKVTEYVKERILA  111 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~----~p----~~~~iGiDis~~~i~~a~~~~~~  111 (252)
                      .++|||.|.|.++..+.+.    .|    ...|.-||+|++..+.-++++..
T Consensus        80 ~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~  131 (370)
T COG1565          80 KLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA  131 (370)
T ss_pred             eEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence            6999999999999877765    34    57899999999987665555543

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=83.21  E-value=3.4  Score=35.94  Aligned_cols=46  Identities=22%  Similarity=0.147  Sum_probs=39.8

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL  112 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~  112 (252)
                      .+.+|||-=+|+|..+++....  +..++|+|+++.-++.+..++...
T Consensus       222 ~~diVlDpf~GsGtt~~aa~~~--~r~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         222 PGDIVLDPFAGSGTTGIAAKNL--GRRFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCCEEeecCCCCChHHHHHHHc--CCceEEEecCHHHHHHHHHHHHhh
Confidence            4679999999999998887777  778999999999999988887654

>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional

Probab=82.87  E-value=7.4  Score=38.15  Aligned_cols=100  Identities=12%  Similarity=-0.009  Sum_probs=61.1

Q ss_pred             ceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC---CCC
Q 025470           67 IQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF---EKG  141 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~---~~~  141 (252)
                      ..|+=+|||.  ++..+++.  ..+..++.+|.+++.++.+++          .   ...++.+|+.+ .+ .+   .-+
T Consensus       401 ~~vII~G~Gr--~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----------~---g~~v~~GDat~-~~-~L~~agi~  463 (621)
T PRK03562        401 PRVIIAGFGR--FGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----------F---GMKVFYGDATR-MD-LLESAGAA  463 (621)
T ss_pred             CcEEEEecCh--HHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----------c---CCeEEEEeCCC-HH-HHHhcCCC
Confidence            3577777775  44444432  235689999999998765532          1   35678899864 21 12   224


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD  194 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~  194 (252)
                      ..+.+++...|+...           ..+-...+.+.|+-.++..+.+.+...
T Consensus       464 ~A~~vvv~~~d~~~n-----------~~i~~~ar~~~p~~~iiaRa~d~~~~~  505 (621)
T PRK03562        464 KAEVLINAIDDPQTS-----------LQLVELVKEHFPHLQIIARARDVDHYI  505 (621)
T ss_pred             cCCEEEEEeCCHHHH-----------HHHHHHHHHhCCCCeEEEEECCHHHHH
Confidence            677888887776532           244455666778777777666554433

>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed

Probab=82.41  E-value=13  Score=34.51  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=45.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s  142 (252)
                      ..++=+||  |.++..+++..  .+..++.+|.+++.++.+.+           ...++.++.+|+...  |.. ..-..
T Consensus       232 ~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~-----------~~~~~~~i~gd~~~~~~L~~-~~~~~  297 (453)
T PRK09496        232 KRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAE-----------ELPNTLVLHGDGTDQELLEE-EGIDE  297 (453)
T ss_pred             CEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-----------HCCCCeEEECCCCCHHHHHh-cCCcc
Confidence            35666666  56666666653  35689999999987654432           123567888998531  111 12346


Q ss_pred             ccEEEEeCCCC
Q 025470          143 LTKMFFLFPDP  153 (252)
Q Consensus       143 ~d~i~~~fpdP  153 (252)
                      .|.|++..++.
T Consensus       298 a~~vi~~~~~~  308 (453)
T PRK09496        298 ADAFIALTNDD  308 (453)
T ss_pred             CCEEEECCCCc
Confidence            77888777654

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=82.27  E-value=2.2  Score=33.87  Aligned_cols=101  Identities=14%  Similarity=0.125  Sum_probs=51.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC--CCccc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE--KGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~--~~s~d  144 (252)
                      .-|||+|=|+|..--.|-+.+|+..++.+|.--..      .-..       -.+.=.++.+|+.+.++. ++  .....
T Consensus        30 G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~l~~------hp~~-------~P~~~~~ilGdi~~tl~~-~~~~g~~a~   95 (160)
T PF12692_consen   30 GPVLELGLGNGRTYDHLREIFPDRRIYVFDRALAC------HPSS-------TPPEEDLILGDIRETLPA-LARFGAGAA   95 (160)
T ss_dssp             S-EEEE--TTSHHHHHHHHH--SS-EEEEESS--S-------GGG----------GGGEEES-HHHHHHH-HHHH-S-EE
T ss_pred             CceEEeccCCCccHHHHHHhCCCCeEEEEeeeccc------CCCC-------CCchHheeeccHHHHhHH-HHhcCCceE
Confidence            46999999999999999999999999999964321      1000       112335788888776653 11  23344


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .++..+-.-...+.    -....-+-..+..+|.|||.++-
T Consensus        96 laHaD~G~g~~~~d----~a~a~~lspli~~~la~gGi~vS  132 (160)
T PF12692_consen   96 LAHADIGTGDKEKD----DATAAWLSPLIAPVLAPGGIMVS  132 (160)
T ss_dssp             EEEE----S-HHHH----HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEeecCCCCcchh----HHHHHhhhHHHHHHhcCCcEEEe
Confidence            45544322111110    01111244567789999998753

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=82.14  E-value=13  Score=32.62  Aligned_cols=95  Identities=17%  Similarity=0.229  Sum_probs=54.8

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~  143 (252)
                      ...||-.|||. |..++.+|+...-..+++++.++...+.+.+    .      +.+.  ++..+-. .+..... ...+
T Consensus       166 ~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~----~------g~~~--vi~~~~~-~~~~~~~~~~~v  232 (339)
T cd08232         166 GKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARA----M------GADE--TVNLARD-PLAAYAADKGDF  232 (339)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----c------CCCE--EEcCCch-hhhhhhccCCCc
Confidence            34566688887 7788888888633378999988876654322    1      2221  2221110 0111111 2336


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.++-....              ...++.+.+.|+++|+++...
T Consensus       233 d~vld~~g~--------------~~~~~~~~~~L~~~G~~v~~g  262 (339)
T cd08232         233 DVVFEASGA--------------PAALASALRVVRPGGTVVQVG  262 (339)
T ss_pred             cEEEECCCC--------------HHHHHHHHHHHhcCCEEEEEe
Confidence            776643221              136788899999999998653

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=81.83  E-value=13  Score=32.74  Aligned_cols=97  Identities=14%  Similarity=0.176  Sum_probs=55.1

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||-.|+|. |..+..+|+.. +.. +++++-++...+.+.+    .      +..++--........+........+
T Consensus       160 ~~~vlI~g~g~~g~~~~~lA~~~-G~~~v~~~~~~~~~~~~l~~----~------g~~~~~~~~~~~~~~~~~~~~~~~~  228 (343)
T cd08236         160 GDTVVVIGAGTIGLLAIQWLKIL-GAKRVIAVDIDDEKLAVARE----L------GADDTINPKEEDVEKVRELTEGRGA  228 (343)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCHHHHHHHHH----c------CCCEEecCccccHHHHHHHhCCCCC
Confidence            34677778876 77888888876 454 8999888765544321    1      2221111111101112112222347


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.++-....              ...+..+.+.|+++|+++...
T Consensus       229 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~g  258 (343)
T cd08236         229 DLVIEAAGS--------------PATIEQALALARPGGKVVLVG  258 (343)
T ss_pred             CEEEECCCC--------------HHHHHHHHHHhhcCCEEEEEc
Confidence            777643211              137788899999999988764

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=81.73  E-value=11  Score=33.43  Aligned_cols=97  Identities=18%  Similarity=0.137  Sum_probs=54.8

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=.|+|. |..++.+|+......++++|.++...+.+.+    .      +.+.+ .....+....+........+
T Consensus       167 g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~----~------g~~~~v~~~~~~~~~~i~~~~~~~~~  236 (351)
T cd08285         167 GDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE----Y------GATDIVDYKNGDVVEQILKLTGGKGV  236 (351)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH----c------CCceEecCCCCCHHHHHHHHhCCCCC
Confidence            34566668874 7777788887644369999998876655442    1      33211 11111111111111222357


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.++-....              ...+..+.+.|+++|+++..
T Consensus       237 d~vld~~g~--------------~~~~~~~~~~l~~~G~~v~~  265 (351)
T cd08285         237 DAVIIAGGG--------------QDTFEQALKVLKPGGTISNV  265 (351)
T ss_pred             cEEEECCCC--------------HHHHHHHHHHhhcCCEEEEe
Confidence            766643211              24788899999999988754

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function

Probab=81.06  E-value=4  Score=36.35  Aligned_cols=116  Identities=16%  Similarity=0.246  Sum_probs=67.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHC--------------------CCCeEEEEecCH--hHHHHHHHHHHHH-----------
Q 025470           66 KIQFADIGCGFGGLLISLSTLF--------------------PEVLMIGMELRD--KVTEYVKERILAL-----------  112 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~--------------------p~~~~iGiDis~--~~i~~a~~~~~~~-----------  112 (252)
                      ...||-||=|.|.=++++|..+                    +..+++.|||-+  ..+......+...           
T Consensus        87 ~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~  166 (315)
T PF11312_consen   87 SLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAAN  166 (315)
T ss_pred             CceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCccccccccc
Confidence            4589999999988888887765                    125899999976  3333332222110           


Q ss_pred             hhcCCCCcccEEEEeCCcccccCc-----cCCCCcccEEEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          113 RVSNPGQYQNISVVRTNSMKYIPN-----YFEKGQLTKMFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       113 ~~~~~~~~~nv~~~~~da~~~l~~-----~~~~~s~d~i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ......+.=|+.|.+.|+.. +..     .+...+.+.|.+.|.- -.+..    .+--...||..+...++||-.+.++
T Consensus       167 ~~~~~~~~~~~~F~~~DvL~-~~~~~l~~ll~~~~~~LITLlFTlNELfs~----s~~kTt~FLl~Lt~~~~~GslLLVv  241 (315)
T PF11312_consen  167 WPLIEPDRFNVSFTQQDVLS-LSEDDLKSLLGPPSPDLITLLFTLNELFST----SISKTTKFLLRLTDICPPGSLLLVV  241 (315)
T ss_pred             cccCCccceeeeEEeccccc-CChHHHHHHhccchhHHHHHHHHHHHHHhc----ChHHHHHHHHHHHhhcCCCcEEEEE
Confidence            00011223378999999863 221     1222245566554421 01100    0112346999999999999888775

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=80.58  E-value=14  Score=33.26  Aligned_cols=41  Identities=20%  Similarity=0.154  Sum_probs=30.2

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVK  106 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~  106 (252)
                      ...||=+|||. |..++.+|+.....+++++|.++...+.|.
T Consensus       186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~  227 (368)
T TIGR02818       186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAK  227 (368)
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence            45677779875 667778888764337999999988776653

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases

Probab=80.39  E-value=39  Score=30.01  Aligned_cols=123  Identities=11%  Similarity=0.131  Sum_probs=67.3

Q ss_pred             EEEEcCcc-cHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCcccE
Q 025470           69 FADIGCGF-GGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        69 vLDIGcG~-G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      |.=||+|. |..+..+....+ ...++-+|+.++..+   .....+....... ..++.+..+|.. .+.      ..|.
T Consensus         2 i~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~---g~a~DL~~~~~~~~~~~~~i~~~~y~-~~~------~aDi   71 (307)
T cd05290           2 LVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAE---GEALDFHHATALTYSTNTKIRAGDYD-DCA------DADI   71 (307)
T ss_pred             EEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhh---HHHHHHHhhhccCCCCCEEEEECCHH-HhC------CCCE
Confidence            44589987 555544333333 236888999876432   2222222111111 135666666643 232      3467


Q ss_pred             EEEeCCCCccccccccc-cc----cCHHHHHHHHHhhc---CCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRR-RV----ISPHLLDEYAYVLG---VGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~kr-r~----~~~~~l~~~~~~Lk---pgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      |++..-.|. | ....| |+    .+..+++++...|+   |+|.+++.|+.-+...+....+...
T Consensus        72 vvitaG~~~-k-pg~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~  135 (307)
T cd05290          72 IVITAGPSI-D-PGNTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDY  135 (307)
T ss_pred             EEECCCCCC-C-CCCCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCc
Confidence            776544432 1 12221 22    34567777776665   7899999998888877777666543

L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=80.37  E-value=1  Score=38.05  Aligned_cols=44  Identities=16%  Similarity=0.160  Sum_probs=39.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERI  109 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~  109 (252)
                      ....+|.-+|.|.++..+.+.+|+..++++|.+|-+-+.|....
T Consensus        44 g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s   87 (303)
T KOG2782|consen   44 GRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHS   87 (303)
T ss_pred             CceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhh
Confidence            45899999999999999999999999999999998877776554

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=80.19  E-value=19  Score=31.72  Aligned_cols=95  Identities=15%  Similarity=0.191  Sum_probs=56.7

Q ss_pred             CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-C-CcccccCccCCCC
Q 025470           66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-T-NSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~-da~~~l~~~~~~~  141 (252)
                      +..||=.|+  |.|..++.+|+.. +..+++++.++...+.+.+.+         +.+.+--.. . +..+.+.... ..
T Consensus       152 g~~VlI~Ga~G~vG~~aiqlAk~~-G~~Vi~~~~~~~~~~~~~~~l---------Ga~~vi~~~~~~~~~~~i~~~~-~~  220 (338)
T cd08295         152 GETVFVSAASGAVGQLVGQLAKLK-GCYVVGSAGSDEKVDLLKNKL---------GFDDAFNYKEEPDLDAALKRYF-PN  220 (338)
T ss_pred             CCEEEEecCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHhc---------CCceeEEcCCcccHHHHHHHhC-CC
Confidence            457777886  5688888899886 567999988887655543311         333221111 1 2221122212 24


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+|.|+-...               ...+....+.|+++|+++..
T Consensus       221 gvd~v~d~~g---------------~~~~~~~~~~l~~~G~iv~~  250 (338)
T cd08295         221 GIDIYFDNVG---------------GKMLDAVLLNMNLHGRIAAC  250 (338)
T ss_pred             CcEEEEECCC---------------HHHHHHHHHHhccCcEEEEe
Confidence            5777663321               13677888999999999864

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=80.06  E-value=1.8  Score=41.85  Aligned_cols=34  Identities=26%  Similarity=0.386  Sum_probs=29.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRD   99 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~   99 (252)
                      ...|||+||..|.++.-.++..| +..++|||+-+
T Consensus        45 a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p   79 (780)
T KOG1098|consen   45 AHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP   79 (780)
T ss_pred             cchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence            45899999999999999999987 55789999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
2vdu_E	254	Structure Of Trm8-Trm82, The Yeast Trna M7g Methyla		1e-74
2vdv_E	246	Structure Of Trm8, M7g Methylation Enzyme Length =		2e-74
3ckk_A	235	Crystal Structure Of Human Methyltransferase-Like P		9e-70
2fca_A	213	The Structure Of Bstrmb Length = 213		2e-08
1yzh_A	214	Crystal Structure Of The Conserved Hypothetical Pro		3e-07
3dxx_A	218	Crystal Structure Of Ectrmb Length = 218		6e-04

>pdb|2VDU|E Chain E, Structure Of Trm8-Trm82, The Yeast Trna M7g Methylation Complex Length = 254

Iteration: 1
 Score =  275 bits (704), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 129/235 (54%), Positives = 174/235 (74%), Gaps = 3/235 (1%)
Query: 16  LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCG 75
           LP+KR+YR RAHSNP SD     P+SP  +D+S  YP ++  A+    +KK+  ADIGCG
Sbjct: 9   LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYP-YYKNAENGQMTKKVTIADIGCG 67
Query: 76  FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKY 133
           FGGL+I LS  FPE L++GME+R +VT YV++RI+ALR +   +  +QNI+V+R N+MK+
Sbjct: 68  FGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 127
Query: 134 IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193
           +PN+FEKGQL+KMFF FPDPHFK++ H+ R+I+  LL EYAYVL  GG++YTITDV++L 
Sbjct: 128 LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLH 187
Query: 194 DWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
           +WM   LE HP+FE L+KE  E D  VK++ +ATEEG+KV R  G  F A F R+
Sbjct: 188 EWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRL 242

>pdb|2VDV|E Chain E, Structure Of Trm8, M7g Methylation Enzyme Length = 246

Iteration: 1
 Score =  275 bits (703), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/235 (54%), Positives = 174/235 (74%), Gaps = 3/235 (1%)
Query: 16  LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCG 75
           LP+KR+YR RAHSNP SD     P+SP  +D+S  YP ++  A+    +KK+  ADIGCG
Sbjct: 1   LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYP-YYKNAENGQMTKKVTIADIGCG 59
Query: 76  FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKY 133
           FGGL+I LS  FPE L++GME+R +VT YV++RI+ALR +   +  +QNI+V+R N+MK+
Sbjct: 60  FGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119
Query: 134 IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193
           +PN+FEKGQL+KMFF FPDPHFK++ H+ R+I+  LL EYAYVL  GG++YTITDV++L 
Sbjct: 120 LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLH 179
Query: 194 DWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
           +WM   LE HP+FE L+KE  E D  VK++ +ATEEG+KV R  G  F A F R+
Sbjct: 180 EWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRL 234

>pdb|3CKK|A Chain A, Crystal Structure Of Human Methyltransferase-Like Protein 1 Length = 235

Iteration: 1
 Score =  259 bits (662), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 122/222 (54%), Positives = 161/222 (72%), Gaps = 12/222 (5%)
Query: 39  PISPSHVDYSLHYPHFFPPADQ------------VNCSKKIQFADIGCGFGGLLISLSTL 86
           P+ P  +D+S  YP FF P  Q                 +++FADIGCG+GGLL+ LS L
Sbjct: 8   PVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPL 67
Query: 87  FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM 146
           FP+ L++G+E+R KV++YV++RI ALR +  G +QNI+ +R+N+MK++PN+F KGQLTKM
Sbjct: 68  FPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKM 127
Query: 147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMF 206
           FFLFPDPHFK   H+ R+ISP LL EYAYVL VGG++YTITDV EL DWM +  E HP+F
Sbjct: 128 FFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHFEEHPLF 187
Query: 207 EALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
           E +  E+L  DPVV  L ++TEEG+KV RNGG+ F A+FRRI
Sbjct: 188 ERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRI 229

>pdb|2FCA|A Chain A, The Structure Of Bstrmb Length = 213

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/118 (26%), Positives = 63/118 (53%), Gaps = 7/118 (5%)
Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           ++G G G  +  ++   P++  IG+EL   V       + A++     + QN+ ++  ++
Sbjct: 44  EVGTGKGQFISGMAKQNPDINYIGIELFKSVI------VTAVQKVKDSEAQNVKLLNIDA 97
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188
              + + FE G++ +++  F DP  K+++ +RR+   H L +Y  V+G GG I+  TD
Sbjct: 98  -DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD 154

>pdb|1YZH|A Chain A, Crystal Structure Of The Conserved Hypothetical Protein, Methyltransferase From Streptococcus Pneumoniae Tigr4 Length = 214

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/118 (24%), Positives = 61/118 (51%), Gaps = 7/118 (5%)
Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           ++G G G  +   +   P++  IG++++  V  Y  +++L + V N      I ++  + 
Sbjct: 47  EVGSGKGAFVSGXAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN------IKLLWVDG 100
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD 188
              + +YFE G++ +++  F DP  K+++ +RR+     LD +  +L   G I+  TD
Sbjct: 101 SD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTD 157

>pdb|3DXX|A Chain A, Crystal Structure Of Ectrmb Length = 218

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/180 (20%), Positives = 79/180 (43%), Gaps = 12/180 (6%)
Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           +IG G G  L++++   PE   +G+E+              L  ++     N+ V+  ++
Sbjct: 40  EIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVG------ACLASAHEEGLSNLRVMCHDA 93
Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
           ++ +        L  +   FPDP  K ++++RR++     +     L +GG+ +  TD E
Sbjct: 94  VEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153
Query: 191 ELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS--ATEEGQKVARNGGQTFQAVFRRI 248
              + M   + +   ++ L+    E++  V   +S   T+  Q+  R G   +  +F R+
Sbjct: 154 PYAEHMLEVMSSIDGYKNLS----ESNDYVPRPASRPVTKFEQRGHRLGHGVWDLMFERV 209

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	1e-101
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	1e-91
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	2e-26
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	1e-25
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	2e-24
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	5e-17
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	8e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	3e-04

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E Length = 246

 Score =  293 bits (751), Expect = e-101
 Identities = 127/235 (54%), Positives = 170/235 (72%), Gaps = 3/235 (1%)

Query: 16  LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCG 75
           LP+KR+YR RAHSNP SD     P+SP  +D+S  YP++    +     K    ADIGCG
Sbjct: 1   LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNAENGQMTKKVT-IADIGCG 59

Query: 76  FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKY 133
           FGGL+I LS  FPE L++GME+R +VT YV++RI+ALR +   +  +QNI+V+R N+MK+
Sbjct: 60  FGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKF 119

Query: 134 IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG 193
           +PN+FEKGQL+KMFF FPDPHFK++ H+ R+I+  LL EYAYVL  GG++YTITDV++L 
Sbjct: 120 LPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITDVKDLH 179

Query: 194 DWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
           +WM   LE HP+FE L+KE  E D  VK++ +ATEEG+KV R  G  F A F R+
Sbjct: 180 EWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRL 234

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} Length = 235

 Score =  269 bits (689), Expect = 1e-91
 Identities = 123/228 (53%), Positives = 160/228 (70%), Gaps = 12/228 (5%)

Query: 33  DSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQ------------FADIGCGFGGLL 80
           D     P+ P  +D+S  YP FF P  Q       +            FADIGCG+GGLL
Sbjct: 2   DHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLL 61

Query: 81  ISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK 140
           + LS LFP+ L++G+E+R KV++YV++RI ALR +  G +QNI+ +R+N+MK++PN+F K
Sbjct: 62  VELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYK 121

Query: 141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL 200
           GQLTKMFFLFPDPHFK   H+ R+ISP LL EYAYVL VGG++YTITDV EL DWM +  
Sbjct: 122 GQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYTITDVLELHDWMCTHF 181

Query: 201 ENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI 248
           E HP+FE +  E+L  DPVV  L ++TEEG+KV RNGG+ F A+FRRI
Sbjct: 182 EEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRI 229

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* Length = 218

 Score =  101 bits (253), Expect = 2e-26
 Identities = 27/137 (19%), Positives = 59/137 (43%), Gaps = 6/137 (4%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           +IG G G  L++++   PE   +G+E+                +SN      + V+  ++
Sbjct: 40  EIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSN------LRVMCHDA 93

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
           ++ +        L  +   FPDP  K ++++RR++     +     L +GG+ +  TD E
Sbjct: 94  VEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153

Query: 191 ELGDWMRSCLENHPMFE 207
              + M   + +   ++
Sbjct: 154 PYAEHMLEVMSSIDGYK 170

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 Length = 213

 Score = 98.8 bits (247), Expect = 1e-25
 Identities = 31/148 (20%), Positives = 67/148 (45%), Gaps = 7/148 (4%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           ++G G G  +  ++   P++  IG+EL   V     +++      N      + ++  ++
Sbjct: 44  EVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQN------VKLLNIDA 97

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
              + + FE G++ +++  F DP  K+++ +RR+   H L +Y  V+G GG I+  TD  
Sbjct: 98  -DTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 156

Query: 191 ELGDWMRSCLENHPMFEALTKEELEADP 218
            L ++       + +       +L    
Sbjct: 157 GLFEYSLKSFSEYGLLLTYVSLDLHNSN 184

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Length = 214

 Score = 95.8 bits (239), Expect = 2e-24
 Identities = 33/147 (22%), Positives = 69/147 (46%), Gaps = 7/147 (4%)

Query: 72  IGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM 131
           +G G G  +  ++   P++  IG++++  V  Y  +++L + V N      I ++  +  
Sbjct: 48  VGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPN------IKLLWVD-G 100

Query: 132 KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE 191
             + +YFE G++ +++  F DP  K+++ +RR+     LD +  +L   G I+  TD   
Sbjct: 101 SDLTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRG 160

Query: 192 LGDWMRSCLENHPMFEALTKEELEADP 218
           L ++       + M       +L A  
Sbjct: 161 LFEYSLVSFSQYGMKLNGVWLDLHASD 187

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Length = 218

 Score = 76.3 bits (187), Expect = 5e-17
 Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 9/146 (6%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           D+G G G     ++   P  L++ ++      E +  +  A      G   N+  +    
Sbjct: 33  DVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAK--AAAKPAKGGLPNLLYLWAT- 89

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
            + +P     G+L         P            SP +L   A V   G       ++ 
Sbjct: 90  AERLPPLSGVGEL-----HVLMPWGSLL-RGVLGSSPEMLRGMAAVCRPGASFLVALNLH 143

Query: 191 ELGDWMRSCLENHPMFEALTKEELEA 216
                +    E+         E L  
Sbjct: 144 AWRPSVPEVGEHPEPTPDSADEWLAP 169

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* Length = 225

 Score = 67.9 bits (165), Expect = 8e-14
 Identities = 18/137 (13%), Positives = 42/137 (30%), Gaps = 7/137 (5%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           D+G G G  +  L+        IG++   +    + ++   ++  + G   N+  V   +
Sbjct: 30  DLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKK--IIKKPSKGGLSNVVFVIAAA 87

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
              +P   +      +  LFP              +  +L   A +         +T   
Sbjct: 88  ES-LPFELK-NIADSISILFPWGTLL---EYVIKPNRDILSNVADLAKKEAHFEFVTTYS 142

Query: 191 ELGDWMRSCLENHPMFE 207
           +  +         P+  
Sbjct: 143 DSYEEAEIKKRGLPLLS 159

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 5e-05
 Identities = 41/274 (14%), Positives = 74/274 (27%), Gaps = 86/274 (31%)

Query: 1   MLEQETNPTISKSTG-----LPRKRFYRARAHS-NPLSDSHFPVPIS--PSHVDYSLHYP 52
           +   E    + K        LPR         + NP   S     I    +  D   H  
Sbjct: 298 LTPDEVKSLLLKYLDCRPQDLPR------EVLTTNPRRLSIIAESIRDGLATWDNWKHVN 351

Query: 53  H------------FFPPADQVNCSKKIQ-FADIGCGFGGLLISLSTL--------FPEVL 91
                           PA+      ++  F           I    L          +V+
Sbjct: 352 CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP------SAHIPTILLSLIWFDVIKSDVM 405

Query: 92  MIGMELRDK--VTEYVKERI-------LALRVSNPG----------QYQNISVVRTNSM- 131
           ++  +L     V +  KE         L L+V               Y       ++ + 
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 132 -----KYIPNYF----EKGQLTKMFFLFP----DPHFKEKNHRRRVISPHLLDEYAYVLG 178
                +Y  ++     +  +  +   LF     D  F E+  R         D  A+   
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRH--------DSTAWN-A 516

Query: 179 VGGIIYTITDVEELGDWMRSCLENHPMFEALTKE 212
            G I+ T+  ++    ++    +N P +E L   
Sbjct: 517 SGSILNTLQQLKFYKPYIC---DNDPKYERLVNA 547

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Length = 260

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 21/159 (13%), Positives = 56/159 (35%), Gaps = 22/159 (13%)

Query: 58  ADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKE---------- 107
           A  V   +  + AD+G G G   ++++    +  +   E   ++ E+ +           
Sbjct: 29  ASLVADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAF 88

Query: 108 ----RILALRVSNPGQYQNISVVRTNSMKYI---PNYFEKGQLTKMFFLFPDPHFKEKNH 160
                +L   V+   + +  + +      ++   P Y + G         PD    E + 
Sbjct: 89  SARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGD-----RRTPDALKAEAHA 143

Query: 161 RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSC 199
               +    +   + ++  GG +  I+  + + + + +C
Sbjct: 144 MTEGLFEDWIRTASAIMVSGGQLSLISRPQSVAEIIAAC 182

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	100.0
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	100.0
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	100.0
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	100.0
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	100.0
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.75
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.72
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.7
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.7
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.7
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.7
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.69
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.67
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.67
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.66
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.66
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.66
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.64
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.64
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.63
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.63
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.63
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.63
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.63
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.63
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.63
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.63
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.62
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.62
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.62
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.62
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.62
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.62
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.61
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.61
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.61
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.6
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.6
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.6
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.6
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.6
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.6
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.6
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.6
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.6
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.6
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.59
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.59
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.59
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.59
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.59
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.59
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.59
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.59
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.58
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.58
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.58
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.58
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.58
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.58
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.57
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.57
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.57
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.57
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.57
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.57
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.56
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.56
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.56
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.56
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.56
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.56
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.55
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.55
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.55
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.55
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	99.55
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.55
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.55
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.55
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.55
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.54
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.54
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.54
2pt6_A	321	Spermidine synthase; transferase, structural genom	99.54
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.54
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.54
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	99.54
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.54
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.54
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.54
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.54
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.54
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.53
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.53
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.53
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.53
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.53
2i7c_A	283	Spermidine synthase; transferase, structural genom	99.52
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	99.52
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.52
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.52
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.52
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.52
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.52
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.52
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.52
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.52
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.52
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.52
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.51
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.51
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.51
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.51
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.51
2o07_A	304	Spermidine synthase; structural genomics, structur	99.51
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.51
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.5
3ocj_A	305	Putative exported protein; structural genomics, PS	99.5
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.5
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.5
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.5
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.5
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.49
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.49
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.49
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.49
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.49
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.49
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.49
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.48
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.48
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	99.48
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.48
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.48
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.48
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.48
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.47
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.47
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.47
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.47
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.47
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.47
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.46
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.46
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.45
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.45
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.45
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.45
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.45
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.45
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.45
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.44
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.44
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.44
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.44
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.44
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.44
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.44
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.44
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.44
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.44
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.43
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.43
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.43
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.43
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.42
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.42
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.42
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.42
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.41
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	99.41
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.41
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.4
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.4
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.4
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.4
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.4
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.4
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.4
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.4
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.4
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.39
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.39
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.39
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.39
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.38
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	99.38
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.38
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.37
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	99.37
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.37
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.36
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.36
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.36
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.35
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.35
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.35
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.34
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.34
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.34
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.34
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.34
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.34
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.34
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.33
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.33
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.32
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.32
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.32
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.32
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.32
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.32
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.3
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	99.28
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	99.28
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.27
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	99.27
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.27
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.27
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.26
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.26
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.25
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.24
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.24
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	99.24
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.23
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	99.21
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.21
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.2
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	99.2
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	99.19
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.19
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	99.18
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.17
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.17
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.16
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.16
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.16
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	99.16
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	99.16
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	99.15
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	99.15
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.15
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.15
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	99.14
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.14
3sso_A	419	Methyltransferase; macrolide, natural product, ros	99.13
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	99.13
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	99.11
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.09
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.07
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	99.05
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.05
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	99.04
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.03
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.0
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.98
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.97
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	98.97
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.96
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.96
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.94
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.93
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	98.92
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.91
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.88
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.88
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.86
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.84
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.83
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.8
3lkd_A	542	Type I restriction-modification system methyltrans	98.79
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.76
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	98.75
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.66
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.66
3khk_A	544	Type I restriction-modification system methylation	98.63
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	98.53
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	98.49
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	98.4
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.35
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	98.33
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.26
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	98.22
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.2
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.1
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.06
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.05
3ufb_A	530	Type I restriction-modification system methyltran	98.04
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.99
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.77
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.73
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.69
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.68
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.57
3vyw_A	308	MNMC2; tRNA wobble uridine, modification enzyme, g	97.57
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.5
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.42
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.37
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.06
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	96.94
3tos_A	257	CALS11; methyltransferase, calicheamicin, structur	96.9
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	96.89
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	96.83
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.72
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	96.61
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	96.31
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	96.24
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.19
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.07
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	95.89
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	95.82
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	95.81
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	95.72
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	95.68
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.53
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	95.45
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	95.26
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	95.2
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	95.17
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	95.17
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	95.16
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	95.12
2zig_A	297	TTHA0409, putative modification methylase; methylt	95.0
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	94.99
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	94.87
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	94.65
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	94.63
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	94.62
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	94.6
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	94.51
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	94.47
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	94.46
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	94.2
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	94.19
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	94.12
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	94.11
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	93.87
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	93.67
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	93.66
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	93.43
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	93.28
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	93.25
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	93.09
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	93.08
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	93.02
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	92.94
4eye_A	342	Probable oxidoreductase; structural genomics, niai	92.94
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	92.7
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	92.66
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	92.52
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	92.5
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	92.48
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	92.41
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	92.1
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	91.98
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	91.96
3gms_A	340	Putative NADPH:quinone reductase; structural genom	91.89
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	90.92
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	90.81
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	90.39
4had_A	350	Probable oxidoreductase protein; structural genomi	90.37
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	90.37
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	90.35
3c85_A	183	Putative glutathione-regulated potassium-efflux S	90.32
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	90.08
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	89.75
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	89.52
3me5_A	482	Cytosine-specific methyltransferase; structural ge	89.36
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	89.36
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	89.25
2km1_A	136	Protein DRE2; yeast, antiapoptotic, protein bindin	88.98
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	88.93
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	88.92
2ixa_A	444	Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver	88.8
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	88.42
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	88.4
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	88.32
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	88.21
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	88.19
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	88.19
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	88.07
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	87.98
3ezy_A	344	Dehydrogenase; structural genomics, unknown functi	87.9
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	87.61
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	86.68
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	86.63
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	86.21
2aef_A	234	Calcium-gated potassium channel MTHK; rossmann fol	86.03
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	85.94
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	85.73
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	85.7
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	85.41
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	85.33
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	84.82
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	84.41
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	83.96
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	83.9
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	83.85
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	83.56
1zh8_A	340	Oxidoreductase; TM0312, structural genomics, JO ce	83.41
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	83.36
3mag_A	307	VP39; methylated adenine, methyltransferase, RNA C	82.89
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	82.78
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	82.5
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	82.41
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	82.41
3q2i_A	354	Dehydrogenase; rossmann fold, UDP-sugar binding, N	82.35
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	82.07
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	81.84
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	81.72
3ec7_A	357	Putative dehydrogenase; alpha-beta, structural gen	81.66
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	81.59
1id1_A	153	Putative potassium channel protein; RCK domain, E.	81.49
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	81.36
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	81.22
3moi_A	387	Probable dehydrogenase; structural genomics, PSI2,	80.53

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=100.00  E-value=7.6e-42  Score=290.97  Aligned_cols=221  Identities=55%  Similarity=1.023  Sum_probs=173.5

Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCCCC------------CccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCH
Q 025470           32 SDSHFPVPISPSHVDYSLHYPHFFPPA------------DQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRD   99 (252)
Q Consensus        32 ~~~~~~~~~~~~~~~w~~~f~~~~~~~------------~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~   99 (252)
                      +++.+.||..|..++|...|+......            ......+.+.|||||||+|.++..||+.+|+.+++|||+|+
T Consensus         1 ~~~~~~~p~~p~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~   80 (235)
T 3ckk_A            1 GDHTLRYPVKPEEMDWSELYPEFFAPLTQNQSHDDPKDKKEKRAQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRV   80 (235)
T ss_dssp             ------CCSSGGGCCCTTTCTTC----------------------CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCH
T ss_pred             CCCCCCCCCCcccCCchhhCccccccccccccccccccccccccCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCH
Confidence            467789999999999999998763110            01113346799999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcC
Q 025470          100 KVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV  179 (252)
Q Consensus       100 ~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp  179 (252)
                      .|++.|++++..++.....+..||.++++|+...++..++++++|.|+++||+||+|++|+++|+++..++++++++|||
T Consensus        81 ~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~~dp~~k~~h~krr~~~~~~l~~~~~~Lkp  160 (235)
T 3ckk_A           81 KVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLFPDPHFKRTKHKWRIISPTLLAEYAYVLRV  160 (235)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEEEEEEESCC-----------CCCHHHHHHHHHHEEE
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeCCCchhhhhhhhhhhhhHHHHHHHHHHCCC
Confidence            99999998877655444456789999999997556666788999999999999999999999999999999999999999


Q ss_pred             CcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEecCCCC
Q 025470          180 GGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVPTS  252 (252)
Q Consensus       180 gG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~~~~~  252 (252)
                      ||.|++.||+.+|.++|.+.+..++.|..+..+++..++..+.....|+||++++++|..+|+++|+|+.+|+
T Consensus       161 GG~l~~~td~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~~~~~~~~t~~e~k~~~~G~~~~~~~f~r~~~~~  233 (235)
T 3ckk_A          161 GGLVYTITDVLELHDWMCTHFEEHPLFERVPLEDLSEDPVVGHLGTSTEEGKKVLRNGGKNFPAIFRRIQDPV  233 (235)
T ss_dssp             EEEEEEEESCHHHHHHHHHHHHTSTTEEEECGGGGTTCTTGGGTTTSSHHHHHHHHTTCCCEEEEEEECCCTT
T ss_pred             CCEEEEEeCCHHHHHHHHHHHHHCCCccccCchhcccCccccCCCCCCHHHHHHHHCCCCeEEEEEEECCCCC
Confidence            9999999999999999999999999898887666655655555678899999999999999999999999885

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=100.00  E-value=4.4e-42  Score=293.53  Aligned_cols=236  Identities=54%  Similarity=0.984  Sum_probs=182.6

Q ss_pred             CCCcccccccCCCCCCCCCCCCCCCCCCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEE
Q 025470           16 LPRKRFYRARAHSNPLSDSHFPVPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGM   95 (252)
Q Consensus        16 ~~~~~~~~~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGi   95 (252)
                      .|+|+|||+|+|.||+++....||..+..++|.+.|++.... .....++.+.|||||||+|.+++.+|+.+|+.+++||
T Consensus         1 ~p~~~~~r~r~~~np~~~~~~~~~~~~~~~~w~~~f~~~~~~-~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gv   79 (246)
T 2vdv_E            1 LPKKRYYRQRAHSNPFSDHQLEYPVSPQDMDWSKLYPYYKNA-ENGQMTKKVTIADIGCGFGGLMIDLSPAFPEDLILGM   79 (246)
T ss_dssp             -------------CTTGGGSCSSCCCCCCCCGGGTCGGGBC-----CBSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEE
T ss_pred             CCcccceeccCCcchhhhhcCcccCCCCCCCHHHHhCccccc-ccccCCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEE
Confidence            488999999999999999999999988889999999862100 0011123579999999999999999999999999999


Q ss_pred             ecCHhHHHHHHHHHHHHhhcCCC--CcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHH
Q 025470           96 ELRDKVTEYVKERILALRVSNPG--QYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEY  173 (252)
Q Consensus        96 Dis~~~i~~a~~~~~~~~~~~~~--~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~  173 (252)
                      |+|+.+++.|++++...+.....  +++|+.++++|+.+.++..++++++|.|+++||+||+|.+|+++|+++..+++++
T Consensus        80 D~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~p~p~~k~~~~~~r~~~~~~l~~~  159 (246)
T 2vdv_E           80 EIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQLSKMFFCFPDPHFKQRKHKARIITNTLLSEY  159 (246)
T ss_dssp             ESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTCEEEEEEESCCCC------CSSCCCHHHHHHH
T ss_pred             EcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccccCEEEEECCCcccccchhHHhhccHHHHHHH
Confidence            99999999999887665433222  6689999999998667777888999999999999999999999999999999999


Q ss_pred             HHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEecCCCC
Q 025470          174 AYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVPTS  252 (252)
Q Consensus       174 ~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~~~~~  252 (252)
                      .++|+|||.|++.||+.+|.+++.+.+..++.|..+..+++..++....+.+.|+||.++.+.|..+|.++|+|..+|+
T Consensus       160 ~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~t~~e~k~~~~g~~~~~~~~~k~~~~~  238 (246)
T 2vdv_E          160 AYVLKEGGVVYTITDVKDLHEWMVKHLEEHPLFERLSKEWEENDECVKIMRNATEEGKKVERKKGDKFVACFTRLPTPA  238 (246)
T ss_dssp             HHHEEEEEEEEEEESCHHHHHHHHHHHHHSTTEEECCHHHHHTCHHHHHHHHSSHHHHHHHHTTCCCEEEEEEECCCCC
T ss_pred             HHHcCCCCEEEEEeccHHHHHHHHHHHHhCcCeEecCccccccCcccccCCCCCHHHHHHHHCCCCeEEEEEEECCCcH
Confidence            9999999999999999999999999999988888876655555543333346799999999999999999999998874

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=100.00  E-value=9.6e-38  Score=262.75  Aligned_cols=189  Identities=19%  Similarity=0.319  Sum_probs=167.6

Q ss_pred             CCCCCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc
Q 025470           42 PSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ  121 (252)
Q Consensus        42 ~~~~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~  121 (252)
                      +..++|...|++.           .++|||||||+|.++..+|+.+|+.+|+|||+|+.+++.|++++...      +++
T Consensus        22 ~~~~d~~~~f~~~-----------~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~------~l~   84 (218)
T 3dxy_A           22 EDMLDFPALFGRE-----------APVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEE------GLS   84 (218)
T ss_dssp             SSCCCHHHHHSSC-----------CCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHT------TCS
T ss_pred             CCCCCHHHHcCCC-----------CCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHh------CCC
Confidence            4557899999853           67999999999999999999999999999999999999999887653      788


Q ss_pred             cEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          122 NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       122 nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      |+.++++|+.+.++..++++++|.|+++||+||++.+|+++|++++.++++++++|||||.|++.||+.+|+++|.+.+.
T Consensus        85 nv~~~~~Da~~~l~~~~~~~~~d~v~~~~~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~~~~~~~~~~~~  164 (218)
T 3dxy_A           85 NLRVMCHDAVEVLHKMIPDNSLRMVQLFFPDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWEPYAEHMLEVMS  164 (218)
T ss_dssp             SEEEECSCHHHHHHHHSCTTCEEEEEEESCCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHH
T ss_pred             cEEEEECCHHHHHHHHcCCCChheEEEeCCCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHH
Confidence            99999999986566567899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCccccccc-ccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEecCC
Q 025470          202 NHPMFEALTKE-ELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIVP  250 (252)
Q Consensus       202 ~~~~~~~~~~~-~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~~~  250 (252)
                      ..+.|.++... ++...|.   ..+.|+||+++.+.|+.||+++|+|.+-
T Consensus       165 ~~~~~~~~~~~~~~~~~~~---~~~~t~fE~k~~~~G~~~~~~~~~~~~~  211 (218)
T 3dxy_A          165 SIDGYKNLSESNDYVPRPA---SRPVTKFEQRGHRLGHGVWDLMFERVKL  211 (218)
T ss_dssp             TSTTEEECCTTSSCBCCCT---TSCCCTTCCTTCTTCCSCEEEEEEECCC
T ss_pred             hCCCcccccCcCccCCCCC---CCCCcHHHHHHHHCCCCeEEEEEEEccc
Confidence            88888877542 3433332   3688999999999999999999999863

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=100.00  E-value=5.9e-36  Score=250.61  Aligned_cols=184  Identities=20%  Similarity=0.329  Sum_probs=158.0

Q ss_pred             CCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE
Q 025470           45 VDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS  124 (252)
Q Consensus        45 ~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~  124 (252)
                      .+|.++|+..           .+.|||||||+|.++..+|+.+|+.+++|||+|+.+++.|++++...      +++|+.
T Consensus        29 ~~~~~~f~~~-----------~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~------~~~nv~   91 (213)
T 2fca_A           29 GKWNTVFGND-----------NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVK   91 (213)
T ss_dssp             TCHHHHHTSC-----------CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEE
T ss_pred             CCHHHHcCCC-----------CceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc------CCCCEE
Confidence            4898888743           56899999999999999999999999999999999999999887653      678999


Q ss_pred             EEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       125 ~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      ++++|+.. ++..++++++|.|+++||+||++.+|+++|++...+++++.++|||||.|++.||+.++++++.+.+..++
T Consensus        92 ~~~~d~~~-l~~~~~~~~~d~v~~~~~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~g  170 (213)
T 2fca_A           92 LLNIDADT-LTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYG  170 (213)
T ss_dssp             EECCCGGG-HHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             EEeCCHHH-HHhhcCcCCcCEEEEECCCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCC
Confidence            99999975 55557788999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             C-cccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEecC
Q 025470          205 M-FEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRIV  249 (252)
Q Consensus       205 ~-~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~~  249 (252)
                      + +.....+.+...+   ...+.|+||+++.+.|+.||+++|+|..
T Consensus       171 ~~~~~~~~d~~~~~~---~~~~~t~~E~~~~~~G~~i~~~~~~~~~  213 (213)
T 2fca_A          171 LLLTYVSLDLHNSNL---EGNIMTEYEEKFSALGQPIYRAEVEWRT  213 (213)
T ss_dssp             CEEEEEESSGGGSSC---TTCCCCTTGGGSSSSSCCCEEEEEECCC
T ss_pred             CcccccccccccccC---CCCCCcHHHHHHHHCCCCeEEEEEEECC
Confidence            3 2223223232222   2257799999999999999999999863

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=100.00  E-value=6.5e-32  Score=225.43  Aligned_cols=181  Identities=19%  Similarity=0.341  Sum_probs=155.7

Q ss_pred             CCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE
Q 025470           45 VDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS  124 (252)
Q Consensus        45 ~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~  124 (252)
                      .+|.+.|+..           .+.|||||||+|.++..+|+.+|+.+++|||+++.+++.|++++...      +++|+.
T Consensus        32 ~~~~~~f~~~-----------~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~------~~~~v~   94 (214)
T 1yzh_A           32 AKWRDLFGND-----------NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIK   94 (214)
T ss_dssp             TTHHHHHTSC-----------CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEE
T ss_pred             cCHHHHcCCC-----------CCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc------CCCCEE
Confidence            3788888743           56899999999999999999999999999999999999999888665      678999


Q ss_pred             EEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       125 ~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      ++++|+.+ ++..++++++|.|++++|+||++.+|+++|+....+++.+.++|+|||.|++.||+.++++++.+.+.+.+
T Consensus        95 ~~~~d~~~-~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~g  173 (214)
T 1yzh_A           95 LLWVDGSD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYG  173 (214)
T ss_dssp             EEECCSSC-GGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             EEeCCHHH-HHhhcCCCCCCEEEEECCCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCCHHHHHHHHHHHHHCC
Confidence            99999975 55557788999999999999999999999999999999999999999999999999999999999998876


Q ss_pred             Ccccc--cccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEe
Q 025470          205 MFEAL--TKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRR  247 (252)
Q Consensus       205 ~~~~~--~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k  247 (252)
                       |..+  ..+.+...   ....+.|+||+++.+.|+.||+++|++
T Consensus       174 -~~~~~~~~d~~~~~---~~~~~~t~~e~~~~~~g~~i~~~~~~~  214 (214)
T 1yzh_A          174 -MKLNGVWLDLHASD---FEGNVMTEYEQKFSNKGQVIYRVEAEF  214 (214)
T ss_dssp             -CEEEEEESSGGGSC---CCCCCCCHHHHHTGGGCCCCEEEEEEC
T ss_pred             -CeeeeccccccccC---CCCCCCcHHHHHHHHCCCCeEEEEEEC
Confidence             4332  22222222   123688999999999999999999974

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.75  E-value=1.2e-18  Score=146.64  Aligned_cols=111  Identities=16%  Similarity=0.154  Sum_probs=87.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecC-HhHHHHH---HHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELR-DKVTEYV---KERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis-~~~i~~a---~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ...|||||||+|.++..+|+..|+..++|||+| +.|++.|   ++++      ...+++|+.++++|+.. ++..+ .+
T Consensus        25 ~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~------~~~~~~~v~~~~~d~~~-l~~~~-~d   96 (225)
T 3p2e_A           25 DRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKP------SKGGLSNVVFVIAAAES-LPFEL-KN   96 (225)
T ss_dssp             SEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCG------GGTCCSSEEEECCBTTB-CCGGG-TT
T ss_pred             CCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHH------HHcCCCCeEEEEcCHHH-hhhhc-cC
Confidence            568999999999999999999899999999999 6777665   4332      22477899999999974 55433 27


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+|.|+++||.|.  . +...+.....++++++++|||||.+++.+
T Consensus        97 ~v~~i~~~~~~~~--~-~~~~~~~~~~~l~~~~r~LkpGG~l~i~~  139 (225)
T 3p2e_A           97 IADSISILFPWGT--L-LEYVIKPNRDILSNVADLAKKEAHFEFVT  139 (225)
T ss_dssp             CEEEEEEESCCHH--H-HHHHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred             eEEEEEEeCCCcH--H-hhhhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence            8999999987444  2 34444556789999999999999999943

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.72  E-value=2.4e-16  Score=129.65  Aligned_cols=120  Identities=16%  Similarity=0.206  Sum_probs=101.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+..|...++|+|+++.+++.|++++...      +.+|+.++.+|+.+.+.   ...++|.
T Consensus        41 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~---~~~~~D~  111 (204)
T 3e05_A           41 DLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF------VARNVTLVEAFAPEGLD---DLPDPDR  111 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH------TCTTEEEEECCTTTTCT---TSCCCSE
T ss_pred             CCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh------CCCcEEEEeCChhhhhh---cCCCCCE
Confidence            56899999999999999999999899999999999999999988765      66899999999864332   2367999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      |+++.+.+-           ...+++++.++|+|||.+++.+...+....+.+.+...++
T Consensus       112 i~~~~~~~~-----------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~l~~~g~  160 (204)
T 3e05_A          112 VFIGGSGGM-----------LEEIIDAVDRRLKSEGVIVLNAVTLDTLTKAVEFLEDHGY  160 (204)
T ss_dssp             EEESCCTTC-----------HHHHHHHHHHHCCTTCEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             EEECCCCcC-----------HHHHHHHHHHhcCCCeEEEEEecccccHHHHHHHHHHCCC
Confidence            998865431           2369999999999999999998887777888888887764

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.70  E-value=1.8e-16  Score=134.63  Aligned_cols=116  Identities=17%  Similarity=0.284  Sum_probs=102.6

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||+|||+|.++..+++. .|...++|+|+++.+++.|++++...      ++++ +.++.+|+.+    .++++++
T Consensus        94 ~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~----~~~~~~~  163 (255)
T 3mb5_A           94 GDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA------GFDDRVTIKLKDIYE----GIEEENV  163 (255)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------TCTTTEEEECSCGGG----CCCCCSE
T ss_pred             CCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc------CCCCceEEEECchhh----ccCCCCc
Confidence            558999999999999999999 88999999999999999999988765      6666 9999999864    2567889


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |.|+++.|+||             .+++++.++|+|||.+++.+...+....+.+.+.+.+
T Consensus       164 D~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g  211 (255)
T 3mb5_A          164 DHVILDLPQPE-------------RVVEHAAKALKPGGFFVAYTPCSNQVMRLHEKLREFK  211 (255)
T ss_dssp             EEEEECSSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHTG
T ss_pred             CEEEECCCCHH-------------HHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence            99999999887             4899999999999999999988888888888888776

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.70  E-value=2.8e-16  Score=125.85  Aligned_cols=118  Identities=16%  Similarity=0.158  Sum_probs=96.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++..|...++|+|+++.+++.|++++...      +.+ |+ ++.+|+.+.++.  ..+++|
T Consensus        26 ~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~-~~~~d~~~~~~~--~~~~~D   96 (178)
T 3hm2_A           26 HETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL------GVSDRI-AVQQGAPRAFDD--VPDNPD   96 (178)
T ss_dssp             TEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT------TCTTSE-EEECCTTGGGGG--CCSCCS
T ss_pred             CCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh------CCCCCE-EEecchHhhhhc--cCCCCC
Confidence            45899999999999999999999999999999999999999877543      565 89 888998644431  127899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      .|+++++..+            ..+++++.++|+|||.+++.+...+....+.+.+...+
T Consensus        97 ~i~~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~~  144 (178)
T 3hm2_A           97 VIFIGGGLTA------------PGVFAAAWKRLPVGGRLVANAVTVESEQMLWALRKQFG  144 (178)
T ss_dssp             EEEECC-TTC------------TTHHHHHHHTCCTTCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred             EEEECCcccH------------HHHHHHHHHhcCCCCEEEEEeeccccHHHHHHHHHHcC
Confidence            9999887655            14999999999999999999887777777777776554

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.70  E-value=3.1e-16  Score=135.39  Aligned_cols=120  Identities=11%  Similarity=0.129  Sum_probs=101.3

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCC-CcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPG-QYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~-~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||+|||+|.++..+++. .|...++|+|+++.+++.|++++..      . +.+|+.++.+|+.+    .++++++
T Consensus       111 ~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~------~~g~~~v~~~~~d~~~----~~~~~~f  180 (275)
T 1yb2_A          111 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE------FYDIGNVRTSRSDIAD----FISDQMY  180 (275)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT------TSCCTTEEEECSCTTT----CCCSCCE
T ss_pred             cCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHh------cCCCCcEEEEECchhc----cCcCCCc
Confidence            458999999999999999998 7888999999999999999887642      3 46789999999864    3556789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~  209 (252)
                      |.|+++.|+|+             .+++.+.++|+|||.+++.+...+....+.+.+.+.+ |..+
T Consensus       181 D~Vi~~~~~~~-------------~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l~~~G-f~~~  232 (275)
T 1yb2_A          181 DAVIADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASG-MHHL  232 (275)
T ss_dssp             EEEEECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGT-EEEE
T ss_pred             cEEEEcCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCC-CeEE
Confidence            99999988876             4999999999999999999988877777777777654 4433

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.70  E-value=1.5e-16  Score=136.84  Aligned_cols=106  Identities=18%  Similarity=0.244  Sum_probs=83.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +..|||||||+|.++..||+..  ++++|+|||+|+.|++.|++++...     ....||.++++|+.+ ++    ...+
T Consensus        71 ~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~-----~~~~~v~~~~~D~~~-~~----~~~~  140 (261)
T 4gek_A           71 GTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY-----KAPTPVDVIEGDIRD-IA----IENA  140 (261)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS-----CCSSCEEEEESCTTT-CC----CCSE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh-----ccCceEEEeeccccc-cc----cccc
Confidence            5689999999999999999984  5789999999999999999887543     234589999999863 43    3568


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|++++.-.+....      ....+|++++++|||||.|++..
T Consensus       141 d~v~~~~~l~~~~~~------~~~~~l~~i~~~LkpGG~lii~e  178 (261)
T 4gek_A          141 SMVVLNFTLQFLEPS------ERQALLDKIYQGLNPGGALVLSE  178 (261)
T ss_dssp             EEEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccceeeeeeeecCch------hHhHHHHHHHHHcCCCcEEEEEe
Confidence            999988754332110      01258999999999999998863

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.69  E-value=4e-16  Score=134.61  Aligned_cols=157  Identities=14%  Similarity=0.174  Sum_probs=116.2

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||+|||+|.++..+++. .|...++|+|+++.+++.|++++...      ++ +++.++.+|+.+.    ++++++
T Consensus       113 ~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~----~~~~~~  182 (277)
T 1o54_A          113 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW------GLIERVTIKVRDISEG----FDEKDV  182 (277)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT------TCGGGEEEECCCGGGC----CSCCSE
T ss_pred             CCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc------CCCCCEEEEECCHHHc----ccCCcc
Confidence            458999999999999999999 67889999999999999999887653      55 6899999998642    556789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccc-cccccCccccC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTK-EELEADPVVKL  222 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~p~~~~  222 (252)
                      |.|+++.|+||             .+++.+.++|+|||.+++.+...+....+.+.+.+.+ |..+.. +.+...-..  
T Consensus       183 D~V~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~g-f~~~~~~~~~~~~~~~--  246 (277)
T 1o54_A          183 DALFLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELP-FIRIEVWESLFRPYKP--  246 (277)
T ss_dssp             EEEEECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSS-EEEEEEECCCCCCEEC--
T ss_pred             CEEEECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHCC-CceeEEEEEeeeeeEe--
Confidence            99999999887             4999999999999999999988777777778887654 543321 111111010  


Q ss_pred             CCCCCHHHHHHHHcCCCeEEEEEEecCC
Q 025470          223 LSSATEEGQKVARNGGQTFQAVFRRIVP  250 (252)
Q Consensus       223 ~~~~t~~e~~~~~~G~~i~~~~~~k~~~  250 (252)
                      ....++.+  ....|++.|-+..+|..+
T Consensus       247 ~~~~~rp~--~~~~~~~~~li~ark~~~  272 (277)
T 1o54_A          247 VPERLRPV--DRMVAHTAYMIFATKVCR  272 (277)
T ss_dssp             CTTSCEEC--SCCCCCSCEEEEEEECSC
T ss_pred             ccceeCCC--ccccCCCeEEEEEEecCC
Confidence            01111111  114677888777777643

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.67  E-value=1.4e-15  Score=127.31  Aligned_cols=164  Identities=13%  Similarity=0.146  Sum_probs=107.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|+..++|+|+|+.+++.|++++.        ...++.++++|+.. ++  ++ +++|.
T Consensus        45 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~~-~~--~~-~~fD~  112 (234)
T 3dtn_A           45 NPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--------GNLKVKYIEADYSK-YD--FE-EKYDM  112 (234)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTC--------SCTTEEEEESCTTT-CC--CC-SCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhc--------cCCCEEEEeCchhc-cC--CC-CCceE
Confidence            458999999999999999999999999999999999998887642        22389999999864 33  33 89999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HH---HHHHHHHHhcCCCcccccccccccCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----EL---GDWMRSCLENHPMFEALTKEELEADP  218 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~---~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (252)
                      |++...-.+....      ....+++++.++|||||.+++.+...    ..   .............+............
T Consensus       113 v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  186 (234)
T 3dtn_A          113 VVSALSIHHLEDE------DKKELYKRSYSILKESGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERS  186 (234)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC---
T ss_pred             EEEeCccccCCHH------HHHHHHHHHHHhcCCCcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhc
Confidence            9988654332110      11249999999999999999976321    11   11111111111223222111111111


Q ss_pred             cccCCCCCCHHHHHHHHcCCCeEEEEEEe
Q 025470          219 VVKLLSSATEEGQKVARNGGQTFQAVFRR  247 (252)
Q Consensus       219 ~~~~~~~~t~~e~~~~~~G~~i~~~~~~k  247 (252)
                      ......+..++.....++|.++-.+.|+.
T Consensus       187 ~~~~~~~~~~~~~ll~~aGF~~v~~~~~~  215 (234)
T 3dtn_A          187 KLDKDIEMNQQLNWLKEAGFRDVSCIYKY  215 (234)
T ss_dssp             -CCCCCBHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccccccCHHHHHHHHHHcCCCceeeeeee
Confidence            11222344577888999999988887764

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.67  E-value=7.4e-16  Score=130.76  Aligned_cols=160  Identities=16%  Similarity=0.140  Sum_probs=116.7

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..+++. .|...++|+|+++.+++.|++++...     .+.+|+.++.+|+.+ .+  ++++++|
T Consensus        97 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~g~~~v~~~~~d~~~-~~--~~~~~~D  168 (258)
T 2pwy_A           97 GMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF-----WQVENVRFHLGKLEE-AE--LEEAAYD  168 (258)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-----CCCCCEEEEESCGGG-CC--CCTTCEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCCCEEEEECchhh-cC--CCCCCcC
Confidence            558999999999999999999 77889999999999999998876542     035789999999874 32  5567899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLS  224 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  224 (252)
                      .|+++.|+||             .+++.+.++|+|||.+++.+...+....+.+.+.+.+ |..+...+.....+. ...
T Consensus       169 ~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~g-f~~~~~~~~~~~~~~-~~~  233 (258)
T 2pwy_A          169 GVALDLMEPW-------------KVLEKAALALKPDRFLVAYLPNITQVLELVRAAEAHP-FRLERVLEVGWREWE-VRL  233 (258)
T ss_dssp             EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESCHHHHHHHHHHHTTTT-EEEEEEEEEEEEEEE-EET
T ss_pred             EEEECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCC-CceEEEEEeeeeEee-ecc
Confidence            9999998887             4999999999999999999988877788888887654 543321110000000 000


Q ss_pred             CCCHHHHHHHHcCCCeEEEEEEecCC
Q 025470          225 SATEEGQKVARNGGQTFQAVFRRIVP  250 (252)
Q Consensus       225 ~~t~~e~~~~~~G~~i~~~~~~k~~~  250 (252)
                      ..++.+  ....|++.|-+..+|..+
T Consensus       234 ~~~rp~--~~~~~~~~~l~~ark~~~  257 (258)
T 2pwy_A          234 PVAHPR--FQQVGHTAFLVALRRWKG  257 (258)
T ss_dssp             TEEEEC--SSCCCCCCEEEEEEECCC
T ss_pred             CccCCC--CccCCcceEEEEEEecCC
Confidence            011101  024577888888888764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.66  E-value=5e-16  Score=125.61  Aligned_cols=113  Identities=13%  Similarity=0.179  Sum_probs=83.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+.  ...++|+|+|+.|++.|++++...      +++|+.+++.|+. .+... .++++|.
T Consensus        23 ~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~~~~-~l~~~-~~~~fD~   92 (185)
T 3mti_A           23 ESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSDL------GIENTELILDGHE-NLDHY-VREPIRA   92 (185)
T ss_dssp             TCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHH------TCCCEEEEESCGG-GGGGT-CCSCEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCcHH-HHHhh-ccCCcCE
Confidence            458999999999999999998  789999999999999999988765      6689999997765 34333 3678999


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++++- |..........-....+++++.++|||||.+++..-
T Consensus        93 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~  136 (185)
T 3mti_A           93 AIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIY  136 (185)
T ss_dssp             EEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEe
Confidence            9887421 110000000001123588999999999999998753

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.66  E-value=1.5e-16  Score=134.59  Aligned_cols=110  Identities=10%  Similarity=0.054  Sum_probs=87.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.++..+++..| ..++|||+++.+++.|+++...       ...+++++.+|+.+.+ ..+++++||.
T Consensus        61 G~rVLdiG~G~G~~~~~~~~~~~-~~v~~id~~~~~~~~a~~~~~~-------~~~~~~~~~~~a~~~~-~~~~~~~FD~  131 (236)
T 3orh_A           61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-------QTHKVIPLKGLWEDVA-PTLPDGHFDG  131 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHTTSCE-EEEEEEECCHHHHHHHHHHGGG-------CSSEEEEEESCHHHHG-GGSCTTCEEE
T ss_pred             CCeEEEECCCccHHHHHHHHhCC-cEEEEEeCCHHHHHHHHHHHhh-------CCCceEEEeehHHhhc-ccccccCCce
Confidence            56899999999999999998876 4799999999999999876532       3457999999997543 3577899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+.   |++....+..+......+++++.|+|||||+|.+..
T Consensus       132 i~~---D~~~~~~~~~~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          132 ILY---DTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEE---CCCCCBGGGTTTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEE---eeeecccchhhhcchhhhhhhhhheeCCCCEEEEEe
Confidence            975   555444444444445679999999999999998853

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.66  E-value=2.9e-15  Score=123.91  Aligned_cols=115  Identities=17%  Similarity=0.097  Sum_probs=95.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+.  +..++|+|+++.+++.|++++...      +++ |+.++.+|+.+.+..   ...+|
T Consensus        56 ~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~------g~~~~v~~~~~d~~~~~~~---~~~~D  124 (204)
T 3njr_A           56 GELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNIDTY------GLSPRMRAVQGTAPAALAD---LPLPE  124 (204)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCTTGGGTT---SCCCS
T ss_pred             CCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHc------CCCCCEEEEeCchhhhccc---CCCCC
Confidence            568999999999999999998  779999999999999999887664      666 899999998753432   34799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      .|++....             ...+++++.++|+|||.+++.+...+....+.+.+.+.+
T Consensus       125 ~v~~~~~~-------------~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~~g  171 (204)
T 3njr_A          125 AVFIGGGG-------------SQALYDRLWEWLAPGTRIVANAVTLESETLLTQLHARHG  171 (204)
T ss_dssp             EEEECSCC-------------CHHHHHHHHHHSCTTCEEEEEECSHHHHHHHHHHHHHHC
T ss_pred             EEEECCcc-------------cHHHHHHHHHhcCCCcEEEEEecCcccHHHHHHHHHhCC
Confidence            99986522             123999999999999999999988888888888887765

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.64  E-value=8.5e-16  Score=125.45  Aligned_cols=114  Identities=17%  Similarity=0.288  Sum_probs=87.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||+|||+|.++..+++.. |...++|+|+++.+++.|++++...      ++ +|+.++++|+.. +.. +.++++
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~~-~~~~~f   94 (197)
T 3eey_A           23 GDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL------NLIDRVTLIKDGHQN-MDK-YIDCPV   94 (197)
T ss_dssp             TCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT------TCGGGEEEECSCGGG-GGG-TCCSCE
T ss_pred             CCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCCeEEEECCHHH-Hhh-hccCCc
Confidence            4589999999999999999985 6779999999999999999887653      55 789999999874 432 345789


Q ss_pred             cEEEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|++++|- |...............+++++.++|+|||.+++.+
T Consensus        95 D~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~  139 (197)
T 3eey_A           95 KAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVI  139 (197)
T ss_dssp             EEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             eEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEE
Confidence            999988654 22111111111112359999999999999999875

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.64  E-value=1.9e-15  Score=130.08  Aligned_cols=121  Identities=17%  Similarity=0.223  Sum_probs=101.2

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC--cccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQ--YQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~--~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...|||||||+|.++..+++. .|...++|+|+++.+++.|++++...     .+  .+|+.++.+|+.+ +  .+++++
T Consensus       100 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-----~g~~~~~v~~~~~d~~~-~--~~~~~~  171 (280)
T 1i9g_A          100 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC-----YGQPPDNWRLVVSDLAD-S--ELPDGS  171 (280)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH-----HTSCCTTEEEECSCGGG-C--CCCTTC
T ss_pred             CCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh-----cCCCCCcEEEEECchHh-c--CCCCCc
Confidence            458999999999999999996 57889999999999999998877542     02  4689999999874 3  255778


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcc
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFE  207 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~  207 (252)
                      +|.|+++.|+||             .+++.+.++|+|||.+++.+...+....+.+.+..+..|.
T Consensus       172 ~D~v~~~~~~~~-------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~l~~~~~f~  223 (280)
T 1i9g_A          172 VDRAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWT  223 (280)
T ss_dssp             EEEEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBC
T ss_pred             eeEEEECCcCHH-------------HHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhcCCcC
Confidence            999999999988             4999999999999999999998888888888877633343

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.63  E-value=3.7e-15  Score=126.85  Aligned_cols=104  Identities=14%  Similarity=0.159  Sum_probs=85.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|.++..+|+..| +..++|+|+++.+++.|++++...      ++. |+.++.+|+.+.++.....+++
T Consensus        64 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------g~~~~v~~~~~d~~~~l~~~~~~~~f  137 (248)
T 3tfw_A           64 AKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA------GVDQRVTLREGPALQSLESLGECPAF  137 (248)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT------TCTTTEEEEESCHHHHHHTCCSCCCC
T ss_pred             CCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHhcCCCCCe
Confidence            45899999999999999999988 789999999999999999888664      554 8999999997655543224589


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|++..+.+.           ...+++.+.++|+|||.|++.
T Consensus       138 D~V~~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~~  169 (248)
T 3tfw_A          138 DLIFIDADKPN-----------NPHYLRWALRYSRPGTLIIGD  169 (248)
T ss_dssp             SEEEECSCGGG-----------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             EEEEECCchHH-----------HHHHHHHHHHhcCCCeEEEEe
Confidence            99998654222           236999999999999999874

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.63  E-value=2.5e-15  Score=126.99  Aligned_cols=120  Identities=13%  Similarity=0.103  Sum_probs=92.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~d  144 (252)
                      ...|||||||+|.+++.+|...|+..++|||+|+.|++.|++++...      +++|+.++++|+.+ ++.. ..++++|
T Consensus        71 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~-~~~~~~~~~~fD  143 (240)
T 1xdz_A           71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAET-FGQRKDVRESYD  143 (240)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHH-HTTCTTTTTCEE
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEeccHHH-hcccccccCCcc
Confidence            45899999999999999999888999999999999999999887765      67789999999874 4310 1157899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC--chHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD--VEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td--~~~~~~~~~~~~~~~~  204 (252)
                      .|++.....            ...+++.+.++|+|||.+++...  ..+-...+.+.+...+
T Consensus       144 ~V~~~~~~~------------~~~~l~~~~~~LkpgG~l~~~~g~~~~~~~~~~~~~l~~~g  193 (240)
T 1xdz_A          144 IVTARAVAR------------LSVLSELCLPLVKKNGLFVALKAASAEEELNAGKKAITTLG  193 (240)
T ss_dssp             EEEEECCSC------------HHHHHHHHGGGEEEEEEEEEEECC-CHHHHHHHHHHHHHTT
T ss_pred             EEEEeccCC------------HHHHHHHHHHhcCCCCEEEEEeCCCchHHHHHHHHHHHHcC
Confidence            999865322            13699999999999999988643  2233344455555554

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.63  E-value=2.6e-15  Score=129.60  Aligned_cols=109  Identities=16%  Similarity=0.178  Sum_probs=87.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|++++...      ++ +++.++.+|+.+ ++. +.++++|
T Consensus        69 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~~-~~~~~fD  138 (285)
T 4htf_A           69 KLRVLDAGGGEGQTAIKMAER--GHQVILCDLSAQMIDRAKQAAEAK------GVSDNMQFIHCAAQD-VAS-HLETPVD  138 (285)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHC-------CCGGGEEEEESCGGG-TGG-GCSSCEE
T ss_pred             CCEEEEeCCcchHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhc------CCCcceEEEEcCHHH-hhh-hcCCCce
Confidence            358999999999999999998  679999999999999998876543      55 789999999874 432 4578999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      .|+++..-.+...        ...+++++.++|||||.+++.+.+..-
T Consensus       139 ~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~~  178 (285)
T 4htf_A          139 LILFHAVLEWVAD--------PRSVLQTLWSVLRPGGVLSLMFYNAHG  178 (285)
T ss_dssp             EEEEESCGGGCSC--------HHHHHHHHHHTEEEEEEEEEEEEBHHH
T ss_pred             EEEECchhhcccC--------HHHHHHHHHHHcCCCeEEEEEEeCCch
Confidence            9998754333221        136999999999999999998866543

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.63  E-value=4.2e-15  Score=125.56  Aligned_cols=123  Identities=12%  Similarity=0.095  Sum_probs=94.5

Q ss_pred             CCCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           64 SKKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        64 ~~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      +++..|||||||+|.++..+|+. .|...++|+|+++.|++.+.+++        ...+|+..+.+|+.......+..++
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a--------~~~~ni~~V~~d~~~p~~~~~~~~~  147 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVV--------RDRRNIFPILGDARFPEKYRHLVEG  147 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHS--------TTCTTEEEEESCTTCGGGGTTTCCC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh--------HhhcCeeEEEEeccCccccccccce
Confidence            34679999999999999999998 68889999999999998887653        2456999999998643222345678


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe---------CchHHHHHHHHHHhcCC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT---------DVEELGDWMRSCLENHP  204 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t---------d~~~~~~~~~~~~~~~~  204 (252)
                      +|.|+..++.|+..          ..++.++.++|||||.+++..         +....+....+.+.+.+
T Consensus       148 vDvVf~d~~~~~~~----------~~~l~~~~r~LKpGG~lvI~ik~r~~d~~~p~~~~~~~ev~~L~~~G  208 (233)
T 4df3_A          148 VDGLYADVAQPEQA----------AIVVRNARFFLRDGGYMLMAIKARSIDVTTEPSEVYKREIKTLMDGG  208 (233)
T ss_dssp             EEEEEECCCCTTHH----------HHHHHHHHHHEEEEEEEEEEEECCHHHHHTCCCHHHHHHHHHHHHTT
T ss_pred             EEEEEEeccCChhH----------HHHHHHHHHhccCCCEEEEEEecccCCCCCChHHHHHHHHHHHHHCC
Confidence            99999888877632          258999999999999998853         22334455556666654

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.63  E-value=3.5e-15  Score=124.67  Aligned_cols=129  Identities=19%  Similarity=0.159  Sum_probs=95.1

Q ss_pred             CceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||||||| +|.++..+|+.. ...++|+|+++.+++.|++++...      +. ++.++++|+.. +. .++++++|
T Consensus        56 ~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~-~v~~~~~d~~~-~~-~~~~~~fD  125 (230)
T 3evz_A           56 GEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIERN------NS-NVRLVKSNGGI-IK-GVVEGTFD  125 (230)
T ss_dssp             SCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHHHT------TC-CCEEEECSSCS-ST-TTCCSCEE
T ss_pred             CCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHh------CC-CcEEEeCCchh-hh-hcccCcee
Confidence            4689999999 999999999986 678999999999999999887653      55 89999999752 32 24568999


Q ss_pred             EEEEeCCCCcccccc--cc---------ccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKN--HR---------RRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h--~k---------rr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~~~~~  204 (252)
                      .|+++.|--+.....  ..         ..-....+++++.++|||||.+++.+.. ......+.+.+...+
T Consensus       126 ~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~l~~~g  197 (230)
T 3evz_A          126 VIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKEKLLNVIKERGIKLG  197 (230)
T ss_dssp             EEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             EEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccHhHHHHHHHHHHHcC
Confidence            999886532211100  00         0001157999999999999999997754 355666777777665

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.63  E-value=3.8e-15  Score=129.80  Aligned_cols=100  Identities=13%  Similarity=0.052  Sum_probs=82.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++.+.+++.|+|||+++.|++.|++++...      ++.|+.|+++|+.+ +    +++++|.
T Consensus       123 g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~------gl~~v~~v~gDa~~-l----~d~~FDv  191 (298)
T 3fpf_A          123 GERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL------GVDGVNVITGDETV-I----DGLEFDV  191 (298)
T ss_dssp             TCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH------TCCSEEEEESCGGG-G----GGCCCSE
T ss_pred             cCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc------CCCCeEEEECchhh-C----CCCCcCE
Confidence            56999999999987766555667899999999999999999988765      56899999999974 3    3689999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++....+-           ...+++++.++|||||+|++..
T Consensus       192 V~~~a~~~d-----------~~~~l~el~r~LkPGG~Lvv~~  222 (298)
T 3fpf_A          192 LMVAALAEP-----------KRRVFRNIHRYVDTETRIIYRT  222 (298)
T ss_dssp             EEECTTCSC-----------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEECCCccC-----------HHHHHHHHHHHcCCCcEEEEEc
Confidence            998643211           1269999999999999999876

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.63  E-value=5.1e-15  Score=124.84  Aligned_cols=155  Identities=15%  Similarity=0.161  Sum_probs=113.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..+++.  ...++|+|+++.+++.|++++...      ++ +++.++.+|+.+.+   ++++.+|
T Consensus        92 ~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~---~~~~~~D  160 (248)
T 2yvl_A           92 EKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLKKF------NLGKNVKFFNVDFKDAE---VPEGIFH  160 (248)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHHHT------TCCTTEEEECSCTTTSC---CCTTCBS
T ss_pred             CCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc------CCCCcEEEEEcChhhcc---cCCCccc
Confidence            458999999999999999999  679999999999999999887653      44 68999999986421   2467899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLS  224 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  224 (252)
                      .|+++.|+|+             .+++.+.++|+|||.+++.+...+....+.+.+.+.  |..+.......... ....
T Consensus       161 ~v~~~~~~~~-------------~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~--f~~~~~~~~~~~~~-~~~~  224 (248)
T 2yvl_A          161 AAFVDVREPW-------------HYLEKVHKSLMEGAPVGFLLPTANQVIKLLESIENY--FGNLEVVEILHRHY-KTIS  224 (248)
T ss_dssp             EEEECSSCGG-------------GGHHHHHHHBCTTCEEEEEESSHHHHHHHHHHSTTT--EEEEEEEEEEEEEE-CCCG
T ss_pred             EEEECCcCHH-------------HHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHhh--CCcceEEEeeeeEe-eccc
Confidence            9999888776             489999999999999999999888888888887765  55442211100000 0001


Q ss_pred             CCCHHHHHHHHcCCCeEEEEEEecC
Q 025470          225 SATEEGQKVARNGGQTFQAVFRRIV  249 (252)
Q Consensus       225 ~~t~~e~~~~~~G~~i~~~~~~k~~  249 (252)
                      ..++.+  ....|++.|-+..+|.+
T Consensus       225 ~~~~~~--~~~~~~~~~l~~~rk~~  247 (248)
T 2yvl_A          225 ERFRPE--DQMVAHTAYLVFGRKLK  247 (248)
T ss_dssp             GGCCBC--SEEECCSCEEEEEEECC
T ss_pred             CccCCC--ccCCCccEEEEEEEecc
Confidence            111111  12467788888777764

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.63  E-value=1.9e-15  Score=129.00  Aligned_cols=104  Identities=16%  Similarity=0.175  Sum_probs=86.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|..++.+|..+|+..++|||+++.+++.|++++...      ++.||.++++|+.+........++||.
T Consensus        81 ~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~l~~v~~~~~d~~~~~~~~~~~~~fD~  154 (249)
T 3g89_A           81 PLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVL------GLKGARALWGRAEVLAREAGHREAYAR  154 (249)
T ss_dssp             SCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEECCHHHHTTSTTTTTCEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CCCceEEEECcHHHhhcccccCCCceE
Confidence            45899999999999999999999999999999999999999988776      778899999999753221122478999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+...-.++            ..+++.+.++|||||.+++..
T Consensus       155 I~s~a~~~~------------~~ll~~~~~~LkpgG~l~~~~  184 (249)
T 3g89_A          155 AVARAVAPL------------CVLSELLLPFLEVGGAAVAMK  184 (249)
T ss_dssp             EEEESSCCH------------HHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEECCcCCH------------HHHHHHHHHHcCCCeEEEEEe
Confidence            998653333            369999999999999998865

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.62  E-value=2.8e-15  Score=121.92  Aligned_cols=109  Identities=11%  Similarity=0.027  Sum_probs=86.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.++.. +...++|+|+++.+++.|++++...      +++|+.++++|+.+.+. .++++++|.
T Consensus        45 ~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~~-~~~~~~fD~  116 (189)
T 3p9n_A           45 GLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEAL------GLSGATLRRGAVAAVVA-AGTTSPVDL  116 (189)
T ss_dssp             TCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHHH------TCSCEEEEESCHHHHHH-HCCSSCCSE
T ss_pred             CCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHc------CCCceEEEEccHHHHHh-hccCCCccE
Confidence            458999999999999988875 4568999999999999999988765      56799999999975432 244689999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td~  189 (252)
                      |+++.|-.+...       ....+++.+.+  +|+|||.|++.+..
T Consensus       117 i~~~~p~~~~~~-------~~~~~l~~~~~~~~L~pgG~l~~~~~~  155 (189)
T 3p9n_A          117 VLADPPYNVDSA-------DVDAILAALGTNGWTREGTVAVVERAT  155 (189)
T ss_dssp             EEECCCTTSCHH-------HHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred             EEECCCCCcchh-------hHHHHHHHHHhcCccCCCeEEEEEecC
Confidence            999866433110       12358899998  99999999998754

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.62  E-value=8.9e-16  Score=131.73  Aligned_cols=96  Identities=13%  Similarity=0.150  Sum_probs=80.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..|+...  .+|+|||+|+.|++.|+            ..+|+.++++|+. .++  ++++++|.
T Consensus        40 ~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~------------~~~~v~~~~~~~e-~~~--~~~~sfD~  102 (257)
T 4hg2_A           40 RGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQAL------------RHPRVTYAVAPAE-DTG--LPPASVDV  102 (257)
T ss_dssp             SSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCC------------CCTTEEEEECCTT-CCC--CCSSCEEE
T ss_pred             CCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhh------------hcCCceeehhhhh-hhc--ccCCcccE
Confidence            4589999999999999999984  58999999999986542            3468999999986 354  78999999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++...-.|..         ...++++++|+|||||.|.+.+
T Consensus       103 v~~~~~~h~~~---------~~~~~~e~~rvLkpgG~l~~~~  135 (257)
T 4hg2_A          103 AIAAQAMHWFD---------LDRFWAELRRVARPGAVFAAVT  135 (257)
T ss_dssp             EEECSCCTTCC---------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeeehhHhh---------HHHHHHHHHHHcCCCCEEEEEE
Confidence            99877666643         2369999999999999998865

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.62  E-value=1.4e-15  Score=126.22  Aligned_cols=112  Identities=18%  Similarity=0.204  Sum_probs=83.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+.+|+..++|||+|+.|++.+.+....  .....+.+|+.++++|+.. ++  +++++ |.
T Consensus        28 ~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~--~~~~~~~~~v~~~~~d~~~-l~--~~~~~-d~  101 (218)
T 3mq2_A           28 DDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAA--KPAKGGLPNLLYLWATAER-LP--PLSGV-GE  101 (218)
T ss_dssp             SEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTS--CGGGTCCTTEEEEECCSTT-CC--SCCCE-EE
T ss_pred             CCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH--hhhhcCCCceEEEecchhh-CC--CCCCC-CE
Confidence            5689999999999999999999999999999999998865433221  1122467799999999874 55  45667 88


Q ss_pred             EEEeCCCCccccc-cccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEK-NHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~-h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++.++  |.... |+-  .-...+++++.++|||||.+++..
T Consensus       102 v~~~~~--~~~~~~~~~--~~~~~~l~~~~~~LkpgG~l~~~~  140 (218)
T 3mq2_A          102 LHVLMP--WGSLLRGVL--GSSPEMLRGMAAVCRPGASFLVAL  140 (218)
T ss_dssp             EEEESC--CHHHHHHHH--TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEcc--chhhhhhhh--ccHHHHHHHHHHHcCCCcEEEEEe
Confidence            887775  32211 010  012469999999999999999965

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.62  E-value=2.2e-15  Score=126.38  Aligned_cols=102  Identities=10%  Similarity=0.083  Sum_probs=84.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      .+.|||||||+|..++.+|+..| +..++|||+++.+++.|++++...      ++  +|+.++.+|+.+.++. +++++
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g~~~~~i~~~~gda~~~l~~-~~~~~  129 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA------GYSPSRVRFLLSRPLDVMSR-LANDS  129 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT------TCCGGGEEEECSCHHHHGGG-SCTTC
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcCcEEEEEcCHHHHHHH-hcCCC
Confidence            45899999999999999999865 789999999999999999988664      44  4899999999875542 44689


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ||.|++..+.+.           ...+++.+.++|+|||.|++
T Consensus       130 fD~V~~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~  161 (221)
T 3dr5_A          130 YQLVFGQVSPMD-----------LKALVDAAWPLLRRGGALVL  161 (221)
T ss_dssp             EEEEEECCCTTT-----------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cCeEEEcCcHHH-----------HHHHHHHHHHHcCCCcEEEE
Confidence            999998643221           23599999999999999988

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.62  E-value=5.1e-15  Score=119.43  Aligned_cols=119  Identities=18%  Similarity=0.264  Sum_probs=95.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|.++..+++.  ...++|+|+++.+++.|++++...      +++|  +.++.+|+.+.    ++++++
T Consensus        53 ~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~~~~d~~~~----~~~~~~  120 (194)
T 1dus_A           53 DDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIKLN------NLDNYDIRVVHSDLYEN----VKDRKY  120 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHHHT------TCTTSCEEEEECSTTTT----CTTSCE
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECchhcc----cccCCc
Confidence            458999999999999999998  779999999999999999887653      6677  99999998642    346789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      |.|+++.|-.+...       ....+++.+.++|+|||.+++.+........+.+.+.+.
T Consensus       121 D~v~~~~~~~~~~~-------~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~l~~~  173 (194)
T 1dus_A          121 NKIITNPPIRAGKE-------VLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYMKDV  173 (194)
T ss_dssp             EEEEECCCSTTCHH-------HHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHHHHH
T ss_pred             eEEEECCCcccchh-------HHHHHHHHHHHHcCCCCEEEEEECCCCChHHHHHHHHHH
Confidence            99999766443111       123699999999999999999998876666666666544

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.62  E-value=2.5e-15  Score=127.95  Aligned_cols=103  Identities=16%  Similarity=0.294  Sum_probs=84.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+  .++|+|+|+.|++.|++++...      +.+|+.++.+|+.. ++  ++++++|.
T Consensus        38 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~l~~a~~~~~~~------~~~~v~~~~~d~~~-l~--~~~~~fD~  106 (260)
T 1vl5_A           38 NEEVLDVATGGGHVANAFAPFVK--KVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQ-MP--FTDERFHI  106 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-C-CC--SCTTCEEE
T ss_pred             CCEEEEEeCCCCHHHHHHHHhCC--EEEEEeCCHHHHHHHHHHHHhc------CCCceEEEEecHHh-CC--CCCCCEEE
Confidence            45899999999999999999964  8999999999999998877553      66799999999863 54  67889999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++++.-.|...        ...+++++.++|||||.|++..
T Consensus       107 V~~~~~l~~~~d--------~~~~l~~~~r~LkpgG~l~~~~  140 (260)
T 1vl5_A          107 VTCRIAAHHFPN--------PASFVSEAYRVLKKGGQLLLVD  140 (260)
T ss_dssp             EEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEhhhhHhcCC--------HHHHHHHHHHHcCCCCEEEEEE
Confidence            998865444321        1369999999999999999963

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.61  E-value=2.6e-15  Score=126.43  Aligned_cols=101  Identities=13%  Similarity=0.311  Sum_probs=84.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccC-ccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIP-NYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~-~~~~~~s~  143 (252)
                      ...|||||||+|.++..+|+..|+..++|+|+++.+++.|++++...      ++ +|+.++.+|+.+.++ . + ++++
T Consensus        72 ~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~-~-~~~f  143 (232)
T 3ntv_A           72 VKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY------HFENQVRIIEGNALEQFENV-N-DKVY  143 (232)
T ss_dssp             CCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT------TCTTTEEEEESCGGGCHHHH-T-TSCE
T ss_pred             CCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECCHHHHHHhh-c-cCCc
Confidence            45899999999999999999888999999999999999999888664      55 489999999975443 2 2 6789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      |.|++..+.+.           ...+++.+.++|+|||.|++
T Consensus       144 D~V~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~  174 (232)
T 3ntv_A          144 DMIFIDAAKAQ-----------SKKFFEIYTPLLKHQGLVIT  174 (232)
T ss_dssp             EEEEEETTSSS-----------HHHHHHHHGGGEEEEEEEEE
T ss_pred             cEEEEcCcHHH-----------HHHHHHHHHHhcCCCeEEEE
Confidence            99998764332           23699999999999999987

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.61  E-value=8.4e-15  Score=124.09  Aligned_cols=104  Identities=13%  Similarity=0.170  Sum_probs=83.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+. .++|+|+|+.+++.|++++         ...++.++.+|+.. ++  ++++++|.
T Consensus        45 ~~~vLD~GcG~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~-~~--~~~~~fD~  111 (253)
T 3g5l_A           45 QKTVLDLGCGFGWHCIYAAEHGAK-KVLGIDLSERMLTEAKRKT---------TSPVVCYEQKAIED-IA--IEPDAYNV  111 (253)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTCS-EEEEEESCHHHHHHHHHHC---------CCTTEEEEECCGGG-CC--CCTTCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHcCCC-EEEEEECCHHHHHHHHHhh---------ccCCeEEEEcchhh-CC--CCCCCeEE
Confidence            458999999999999999999654 8999999999999887653         25689999999863 54  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |++...-.+...        ...+++++.++|||||.+++.+.+.
T Consensus       112 v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~  148 (253)
T 3g5l_A          112 VLSSLALHYIAS--------FDDICKKVYINLKSSGSFIFSVEHP  148 (253)
T ss_dssp             EEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred             EEEchhhhhhhh--------HHHHHHHHHHHcCCCcEEEEEeCCC
Confidence            998764333211        1369999999999999999986553

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.61  E-value=3.9e-15  Score=127.73  Aligned_cols=105  Identities=22%  Similarity=0.414  Sum_probs=88.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|+..++|+|+++.+++.|++++...      +.+|+.++.+|+.. ++  ++++++|.
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~-~~--~~~~~fD~  108 (276)
T 3mgg_A           38 GAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN------GIKNVKFLQANIFS-LP--FEDSSFDH  108 (276)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGG-CC--SCTTCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEccccc-CC--CCCCCeeE
Confidence            45899999999999999999999999999999999999999887653      67799999999874 44  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.+...        ...+++++.++|||||.+++..
T Consensus       109 v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~  142 (276)
T 3mgg_A          109 IFVCFVLEHLQS--------PEEALKSLKKVLKPGGTITVIE  142 (276)
T ss_dssp             EEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEechhhhcCC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            998764333221        1269999999999999999965

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.60  E-value=2e-15  Score=124.12  Aligned_cols=116  Identities=15%  Similarity=0.123  Sum_probs=94.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++. +...++|+|+++.+++.|++++...      +..|+.++.+|+..     +.++++|.
T Consensus        61 ~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~-----~~~~~fD~  128 (205)
T 3grz_A           61 PLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAALN------GIYDIALQKTSLLA-----DVDGKFDL  128 (205)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT------TCCCCEEEESSTTT-----TCCSCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEeccccc-----cCCCCceE
Confidence            458999999999999998875 5679999999999999999887653      66679999999863     23578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |+++.+..+.           ..+++++.++|+|||.+++.+........+.+.+...+
T Consensus       129 i~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~G  176 (205)
T 3grz_A          129 IVANILAEIL-----------LDLIPQLDSHLNEDGQVIFSGIDYLQLPKIEQALAENS  176 (205)
T ss_dssp             EEEESCHHHH-----------HHHGGGSGGGEEEEEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred             EEECCcHHHH-----------HHHHHHHHHhcCCCCEEEEEecCcccHHHHHHHHHHcC
Confidence            9998754332           36899999999999999998666666666777777665

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.60  E-value=3.5e-15  Score=123.50  Aligned_cols=105  Identities=21%  Similarity=0.352  Sum_probs=87.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. |...++|+|+++.+++.|++++...      +++|+.++.+|+.. ++  ++++++|
T Consensus        38 ~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~-~~--~~~~~fD  108 (219)
T 3dh0_A           38 GMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL------GLKNVEVLKSEENK-IP--LPDNTVD  108 (219)
T ss_dssp             TCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECBTTB-CS--SCSSCEE
T ss_pred             CCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeccccc-CC--CCCCCee
Confidence            4589999999999999999996 7789999999999999999887665      66789999999863 43  6678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++..-.+...        ...+++++.++|+|||.+++.+
T Consensus       109 ~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~i~~  143 (219)
T 3dh0_A          109 FIFMAFTFHELSE--------PLKFLEELKRVAKPFAYLAIID  143 (219)
T ss_dssp             EEEEESCGGGCSS--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEeehhhhhcCC--------HHHHHHHHHHHhCCCeEEEEEE
Confidence            9998765433211        1369999999999999999975

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.60  E-value=4.3e-15  Score=127.39  Aligned_cols=133  Identities=10%  Similarity=0.144  Sum_probs=94.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccC----ccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIP----NYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~----~~~~~  140 (252)
                      ...|||||||+|.+++.+|++.|...++|||+++.+++.|++++....   ..++. ++.++++|+.+.+.    ..+++
T Consensus        37 ~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~---~~~l~~~v~~~~~D~~~~~~~~~~~~~~~  113 (260)
T 2ozv_A           37 ACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD---NAAFSARIEVLEADVTLRAKARVEAGLPD  113 (260)
T ss_dssp             CEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGG---GTTTGGGEEEEECCTTCCHHHHHHTTCCT
T ss_pred             CCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhh---hCCCcceEEEEeCCHHHHhhhhhhhccCC
Confidence            458999999999999999999998999999999999999988763300   02444 69999999875322    12557


Q ss_pred             CcccEEEEeCCCCccc---c-------ccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          141 GQLTKMFFLFPDPHFK---E-------KNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k---~-------~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      +++|.|++|.|--+..   .       .++........+++.+.++|+|||.|++......+ ..+.+.+..
T Consensus       114 ~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~-~~~~~~l~~  184 (260)
T 2ozv_A          114 EHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISRPQSV-AEIIAACGS  184 (260)
T ss_dssp             TCEEEEEECCCC---------------------CCHHHHHHHHHHHEEEEEEEEEEECGGGH-HHHHHHHTT
T ss_pred             CCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEcHHHH-HHHHHHHHh
Confidence            8999999985533221   0       00111112457999999999999999999877644 345555544

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.60  E-value=4.1e-15  Score=128.81  Aligned_cols=117  Identities=12%  Similarity=0.127  Sum_probs=92.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|.+++.+|+..+. .++|+|+|+.+++.|++++...      ++.| +.++++|+.+.+.    ++++|
T Consensus       126 ~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~~n------~~~~~v~~~~~D~~~~~~----~~~fD  194 (278)
T 2frn_A          126 DELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIHLN------KVEDRMSAYNMDNRDFPG----ENIAD  194 (278)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCTTTCCC----CSCEE
T ss_pred             CCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHc------CCCceEEEEECCHHHhcc----cCCcc
Confidence            568999999999999999999765 7999999999999999887653      5555 9999999875322    67899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc------hHHHHHHHHHHhcCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV------EELGDWMRSCLENHPM  205 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~------~~~~~~~~~~~~~~~~  205 (252)
                      .|+++.|...            ..++..+.++|+|||.+++.+..      .+..+.+.+.+...++
T Consensus       195 ~Vi~~~p~~~------------~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~i~~~~~~~G~  249 (278)
T 2frn_A          195 RILMGYVVRT------------HEFIPKALSIAKDGAIIHYHNTVPEKLMPREPFETFKRITKEYGY  249 (278)
T ss_dssp             EEEECCCSSG------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTTTHHHHHHHHHHTTC
T ss_pred             EEEECCchhH------------HHHHHHHHHHCCCCeEEEEEEeeccccccccHHHHHHHHHHHcCC
Confidence            9999876433            24999999999999999997754      2344555555655543

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.60  E-value=6e-15  Score=131.83  Aligned_cols=122  Identities=16%  Similarity=0.116  Sum_probs=94.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.+++.+|... |+..++|+|+++.+++.|++++...      +++++.++++|+.+ ++  .+...+|
T Consensus       204 ~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~------g~~~i~~~~~D~~~-~~--~~~~~~D  274 (354)
T 3tma_A          204 GMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS------GLSWIRFLRADARH-LP--RFFPEVD  274 (354)
T ss_dssp             TCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT------TCTTCEEEECCGGG-GG--GTCCCCS
T ss_pred             CCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc------CCCceEEEeCChhh-Cc--cccCCCC
Confidence            4589999999999999999987 8899999999999999999988664      66699999999874 43  3345689


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      .|++|.|-.+.........-....+++.+.++|+|||.+++.|.+.++...+
T Consensus       275 ~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~~~~~~~  326 (354)
T 3tma_A          275 RILANPPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRPALLKRA  326 (354)
T ss_dssp             EEEECCCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCHHHHHHH
T ss_pred             EEEECCCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHH
Confidence            9999876443211111111123579999999999999999999987665433

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.60  E-value=5.9e-15  Score=126.15  Aligned_cols=129  Identities=19%  Similarity=0.213  Sum_probs=94.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.+++.+|++.+. .++|+|+++.+++.|++++...      ++. ++.++++|+.+ +...++++++|
T Consensus        50 ~~~vLDlG~G~G~~~~~la~~~~~-~v~gvDi~~~~~~~a~~n~~~~------~~~~~v~~~~~D~~~-~~~~~~~~~fD  121 (259)
T 3lpm_A           50 KGKIIDLCSGNGIIPLLLSTRTKA-KIVGVEIQERLADMAKRSVAYN------QLEDQIEIIEYDLKK-ITDLIPKERAD  121 (259)
T ss_dssp             CCEEEETTCTTTHHHHHHHTTCCC-EEEEECCSHHHHHHHHHHHHHT------TCTTTEEEECSCGGG-GGGTSCTTCEE
T ss_pred             CCEEEEcCCchhHHHHHHHHhcCC-cEEEEECCHHHHHHHHHHHHHC------CCcccEEEEECcHHH-hhhhhccCCcc
Confidence            458999999999999999999765 8999999999999999988654      454 69999999975 43346678999


Q ss_pred             EEEEeCCCCcc-----ccc-------cccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          145 KMFFLFPDPHF-----KEK-------NHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       145 ~i~~~fpdP~~-----k~~-------h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      .|++|.|--..     ...       ++........+++.+.++|+|||.+++........+ +.+.+...
T Consensus       122 ~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~-~~~~l~~~  191 (259)
T 3lpm_A          122 IVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRPERLLD-IIDIMRKY  191 (259)
T ss_dssp             EEEECCCC-----------------------HHHHHHHHHHHHHEEEEEEEEEEECTTTHHH-HHHHHHHT
T ss_pred             EEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcHHHHHH-HHHHHHHC
Confidence            99998652111     000       000111224699999999999999999886655444 45555554

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.60  E-value=5e-16  Score=127.59  Aligned_cols=128  Identities=12%  Similarity=0.137  Sum_probs=74.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc-cCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN-YFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~-~~~~~s~d  144 (252)
                      ...|||+|||+|.++..+++..|+..++|+|+++.+++.|++++...      +. ++.++++|+.+.++. ....+++|
T Consensus        31 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~~~~~~~~~~fD  103 (215)
T 4dzr_A           31 GTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERF------GA-VVDWAAADGIEWLIERAERGRPWH  103 (215)
T ss_dssp             TEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------------CCHHHHHHHHHHHHHTTCCBS
T ss_pred             CCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHh------CC-ceEEEEcchHhhhhhhhhccCccc
Confidence            56899999999999999999999899999999999999998876543      44 899999998752221 00128999


Q ss_pred             EEEEeCCCCcccccccccccc------------------CHHHHHHHHHhhcCCcE-EEEEeCchHHHHHHHHHHh
Q 025470          145 KMFFLFPDPHFKEKNHRRRVI------------------SPHLLDEYAYVLGVGGI-IYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~------------------~~~~l~~~~~~LkpgG~-l~~~td~~~~~~~~~~~~~  201 (252)
                      .|+++.|--+....++....+                  ...+++.+.++|||||. +++.+.. .....+.+.+.
T Consensus       104 ~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~~l~  178 (215)
T 4dzr_A          104 AIVSNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEVGH-NQADEVARLFA  178 (215)
T ss_dssp             EEEECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEECTT-SCHHHHHHHTG
T ss_pred             EEEECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEECC-ccHHHHHHHHH
Confidence            999986632221111100000                  15789999999999999 6665543 33444555555

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.60  E-value=7.5e-15  Score=122.21  Aligned_cols=104  Identities=13%  Similarity=0.087  Sum_probs=83.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCC--CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFE--KG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~--~~  141 (252)
                      ...|||||||+|.++..+|+..| +..++|+|+++.+++.|++++...      ++. ++.++.+|+.+.++....  .+
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~~  132 (223)
T 3duw_A           59 ARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA------NLNDRVEVRTGLALDSLQQIENEKYE  132 (223)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            45899999999999999999988 789999999999999999888664      555 499999999764432111  15


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+|.|++..+.++           ...+++.+.++|+|||.+++.
T Consensus       133 ~fD~v~~d~~~~~-----------~~~~l~~~~~~L~pgG~lv~~  166 (223)
T 3duw_A          133 PFDFIFIDADKQN-----------NPAYFEWALKLSRPGTVIIGD  166 (223)
T ss_dssp             CCSEEEECSCGGG-----------HHHHHHHHHHTCCTTCEEEEE
T ss_pred             CcCEEEEcCCcHH-----------HHHHHHHHHHhcCCCcEEEEe
Confidence            7999998765332           236999999999999988874

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.60  E-value=1.2e-14  Score=125.32  Aligned_cols=132  Identities=14%  Similarity=0.227  Sum_probs=98.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++...|...++|+|+|+.+++.|++++...      +++|+.++++|+...    ++++++|.
T Consensus       110 ~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~------~~~~v~~~~~d~~~~----~~~~~fD~  179 (276)
T 2b3t_A          110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL------AIKNIHILQSDWFSA----LAGQQFAM  179 (276)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCSTTGG----GTTCCEEE
T ss_pred             CCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEcchhhh----cccCCccE
Confidence            45899999999999999999999999999999999999999988765      667899999998642    33678999


Q ss_pred             EEEeCCCCcccccc--------cccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccc
Q 025470          146 MFFLFPDPHFKEKN--------HRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEA  208 (252)
Q Consensus       146 i~~~fpdP~~k~~h--------~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~  208 (252)
                      |+++.|--+....|        ..+.         -....+++.+.++|+|||.+++..... ..+.+.+.+...+ |..
T Consensus       180 Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~~~-~~~~~~~~l~~~G-f~~  257 (276)
T 2b3t_A          180 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGWQ-QGEAVRQAFILAG-YHD  257 (276)
T ss_dssp             EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCSS-CHHHHHHHHHHTT-CTT
T ss_pred             EEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECch-HHHHHHHHHHHCC-CcE
Confidence            99987643322111        1000         012568999999999999999976543 2344555565554 443


Q ss_pred             c
Q 025470          209 L  209 (252)
Q Consensus       209 ~  209 (252)
                      +
T Consensus       258 v  258 (276)
T 2b3t_A          258 V  258 (276)
T ss_dssp             C
T ss_pred             E
Confidence            3

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.60  E-value=7.3e-15  Score=130.22  Aligned_cols=123  Identities=15%  Similarity=0.111  Sum_probs=95.3

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhh---cC--CCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRV---SN--PGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~---~~--~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      ...|||||||+|.++..+|+. .|...++|+|+++.+++.|++++.....   ..  .....|+.++.+|+.+.+ ..++
T Consensus       106 g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~-~~~~  184 (336)
T 2b25_A          106 GDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGAT-EDIK  184 (336)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC-----
T ss_pred             CCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcc-cccC
Confidence            558999999999999999998 5778999999999999999988765310   00  001368999999987533 1255


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      ++++|.|+++.++||.             ++.++.++|+|||.+++.+...+....+.+.+..
T Consensus       185 ~~~fD~V~~~~~~~~~-------------~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~l~~  234 (336)
T 2b25_A          185 SLTFDAVALDMLNPHV-------------TLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRT  234 (336)
T ss_dssp             ---EEEEEECSSSTTT-------------THHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHH
T ss_pred             CCCeeEEEECCCCHHH-------------HHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHHHh
Confidence            6789999999998883             8999999999999999999888777777777664

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.59  E-value=8.7e-15  Score=124.03  Aligned_cols=103  Identities=20%  Similarity=0.323  Sum_probs=86.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++..+. .++|+|+|+.+++.|++++...      ++++ +.++++|+. .++  ++++++|
T Consensus        47 ~~~vLDiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~d~~-~~~--~~~~~fD  116 (257)
T 3f4k_A           47 DAKIADIGCGTGGQTLFLADYVKG-QITGIDLFPDFIEIFNENAVKA------NCADRVKGITGSMD-NLP--FQNEELD  116 (257)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHCCS-EEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTT-SCS--SCTTCEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHc------CCCCceEEEECChh-hCC--CCCCCEE
Confidence            458999999999999999999875 8999999999999999887654      5544 999999985 354  6678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++..-.+..         ...+++++.++|+|||.+++.+
T Consensus       117 ~v~~~~~l~~~~---------~~~~l~~~~~~L~pgG~l~~~~  150 (257)
T 3f4k_A          117 LIWSEGAIYNIG---------FERGMNEWSKYLKKGGFIAVSE  150 (257)
T ss_dssp             EEEEESCSCCCC---------HHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEecChHhhcC---------HHHHHHHHHHHcCCCcEEEEEE
Confidence            999876544431         2369999999999999999986

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=3.1e-14  Score=113.85  Aligned_cols=113  Identities=16%  Similarity=0.222  Sum_probs=95.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++  +...++|+|+++.+++.|++++...      +++|+.++++|+.+.    ++++++|.
T Consensus        36 ~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~d~~~~----~~~~~~D~  103 (183)
T 2yxd_A           36 DDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLAKF------NIKNCQIIKGRAEDV----LDKLEFNK  103 (183)
T ss_dssp             TCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHHHT------TCCSEEEEESCHHHH----GGGCCCSE
T ss_pred             CCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHc------CCCcEEEEECCcccc----ccCCCCcE
Confidence            45899999999999999999  6889999999999999999887653      667899999998752    44578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |+++.+ ..           ...+++.+.++  |||.+++.+...+....+.+.+...+
T Consensus       104 i~~~~~-~~-----------~~~~l~~~~~~--~gG~l~~~~~~~~~~~~~~~~l~~~g  148 (183)
T 2yxd_A          104 AFIGGT-KN-----------IEKIIEILDKK--KINHIVANTIVLENAAKIINEFESRG  148 (183)
T ss_dssp             EEECSC-SC-----------HHHHHHHHHHT--TCCEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             EEECCc-cc-----------HHHHHHHHhhC--CCCEEEEEecccccHHHHHHHHHHcC
Confidence            999877 11           23689999888  99999999988888888888998887

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.59  E-value=1.9e-14  Score=115.84  Aligned_cols=118  Identities=14%  Similarity=0.157  Sum_probs=97.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++..  ..++|+|+++.+++.|++++...      +. .++.++.+|+.+.++.   .+.+|
T Consensus        34 ~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~~~---~~~~D  102 (192)
T 1l3i_A           34 NDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH------GLGDNVTLMEGDAPEALCK---IPDID  102 (192)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT------TCCTTEEEEESCHHHHHTT---SCCEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHHHc------CCCcceEEEecCHHHhccc---CCCCC
Confidence            4589999999999999999986  78999999999999999887653      55 6899999998653331   15899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      .|++..+.+..           ..+++.+.++|+|||.+++.+........+.+.+...++
T Consensus       103 ~v~~~~~~~~~-----------~~~l~~~~~~l~~gG~l~~~~~~~~~~~~~~~~l~~~g~  152 (192)
T 1l3i_A          103 IAVVGGSGGEL-----------QEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF  152 (192)
T ss_dssp             EEEESCCTTCH-----------HHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             EEEECCchHHH-----------HHHHHHHHHhcCCCcEEEEEecCcchHHHHHHHHHHCCC
Confidence            99987654332           369999999999999999998888778888888887764

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.59  E-value=1.1e-14  Score=121.02  Aligned_cols=103  Identities=14%  Similarity=0.111  Sum_probs=79.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC-ccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP-NYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~-~~~~~~s~d  144 (252)
                      +..|||||||+|.++..+|+..+...++|+|+|+.|++.+.+....        ..|+.++.+|+..... ..+ .+++|
T Consensus        58 g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~-~~~fD  128 (210)
T 1nt2_A           58 DERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASKPWKYSGI-VEKVD  128 (210)
T ss_dssp             SCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTCGGGTTTT-CCCEE
T ss_pred             CCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhc--------CCCeEEEEcCCCCchhhccc-cccee
Confidence            4589999999999999999998777999999999988665544322        2589999999864211 113 37899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++.+.|..          ...+++++.++|||||.|++..
T Consensus       129 ~V~~~~~~~~~----------~~~~l~~~~r~LkpgG~l~i~~  161 (210)
T 1nt2_A          129 LIYQDIAQKNQ----------IEILKANAEFFLKEKGEVVIMV  161 (210)
T ss_dssp             EEEECCCSTTH----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeccChhH----------HHHHHHHHHHHhCCCCEEEEEE
Confidence            99998765531          1136899999999999999984

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.59  E-value=9.9e-15  Score=126.01  Aligned_cols=115  Identities=17%  Similarity=0.126  Sum_probs=92.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.+|+..+...++|+|+++.+++.|++++...      +++|+.++.+|+.+. +.   .+.+|.
T Consensus       120 ~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n------~l~~~~~~~~d~~~~-~~---~~~~D~  189 (272)
T 3a27_A          120 NEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLN------KLNNVIPILADNRDV-EL---KDVADR  189 (272)
T ss_dssp             TCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHT------TCSSEEEEESCGGGC-CC---TTCEEE
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCEEEEECChHHc-Cc---cCCceE
Confidence            56899999999999999999988889999999999999999988653      778999999999753 32   568999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch-----HHHHHHHHHHhc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE-----ELGDWMRSCLEN  202 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~-----~~~~~~~~~~~~  202 (252)
                      |+++.|...            ..++..+.+.|+|||.+++.+...     +......+.+.+
T Consensus       190 Vi~d~p~~~------------~~~l~~~~~~LkpgG~l~~s~~~~~~~~~~~~~~~~~~~~~  239 (272)
T 3a27_A          190 VIMGYVHKT------------HKFLDKTFEFLKDRGVIHYHETVAEKIMYERPIERLKFYAE  239 (272)
T ss_dssp             EEECCCSSG------------GGGHHHHHHHEEEEEEEEEEEEEEGGGTTTHHHHHHHHHHH
T ss_pred             EEECCcccH------------HHHHHHHHHHcCCCCEEEEEEcCccccccccHHHHHHHHHH
Confidence            999876411            248999999999999999876543     344444555543

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.59  E-value=7.8e-15  Score=124.24  Aligned_cols=103  Identities=15%  Similarity=0.111  Sum_probs=82.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+.. +..++|+|+|+.+++.|++++...      ++ +|+.++++|+.+ ++  + ++++|
T Consensus        37 ~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~-~~~fD  105 (256)
T 1nkv_A           37 GTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAEEL------GVSERVHFIHNDAAG-YV--A-NEKCD  105 (256)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCCTT-CC--C-SSCEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEECChHh-CC--c-CCCCC
Confidence            4589999999999999999987 568999999999999998877653      45 489999999874 43  3 78999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-.+..        -...+++++.++|||||.+++..
T Consensus       106 ~V~~~~~~~~~~--------~~~~~l~~~~r~LkpgG~l~~~~  140 (256)
T 1nkv_A          106 VAACVGATWIAG--------GFAGAEELLAQSLKPGGIMLIGE  140 (256)
T ss_dssp             EEEEESCGGGTS--------SSHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEECCChHhcC--------CHHHHHHHHHHHcCCCeEEEEec
Confidence            999854322211        12369999999999999999964

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.59  E-value=7.6e-15  Score=121.67  Aligned_cols=111  Identities=16%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-----cEEEEeCCcccccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-----NISVVRTNSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-----nv~~~~~da~~~l~~~~~~  140 (252)
                      ...|||||||+|.++..+++..+...++|+|+++.+++.|++++..      .+++     |+.++++|+. .++  +..
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~~~~~v~~~~~d~~-~~~--~~~  100 (217)
T 3jwh_A           30 ARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDR------LRLPRNQWERLQLIQGALT-YQD--KRF  100 (217)
T ss_dssp             CCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTT------CCCCHHHHTTEEEEECCTT-SCC--GGG
T ss_pred             CCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHH------hcCCcccCcceEEEeCCcc-ccc--ccC
Confidence            4589999999999999999998888999999999999999887632      2443     7999999985 233  445


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      +++|.|+++..-.+....      ....+++++.++|||||.+++ +++..+
T Consensus       101 ~~fD~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~li~-~~~~~~  145 (217)
T 3jwh_A          101 HGYDAATVIEVIEHLDLS------RLGAFERVLFEFAQPKIVIVT-TPNIEY  145 (217)
T ss_dssp             CSCSEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEEE-EEBHHH
T ss_pred             CCcCEEeeHHHHHcCCHH------HHHHHHHHHHHHcCCCEEEEE-ccCccc
Confidence            799999987543322110      013699999999999995554 555443

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.59  E-value=1.5e-14  Score=121.25  Aligned_cols=154  Identities=12%  Similarity=0.079  Sum_probs=102.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+  .++|+|+|+.+++.|+++.         .. ++.++++|+.+ +   ++++++|.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~~~--~v~gvD~s~~~~~~a~~~~---------~~-~v~~~~~d~~~-~---~~~~~fD~  106 (250)
T 2p7i_A           43 PGNLLELGSFKGDFTSRLQEHFN--DITCVEASEEAISHAQGRL---------KD-GITYIHSRFED-A---QLPRRYDN  106 (250)
T ss_dssp             SSCEEEESCTTSHHHHHHTTTCS--CEEEEESCHHHHHHHHHHS---------CS-CEEEEESCGGG-C---CCSSCEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHhh---------hC-CeEEEEccHHH-c---CcCCcccE
Confidence            34799999999999999999865  7999999999999887643         11 89999999874 3   45789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHH-HhhcCCcEEEEEeCchHHHHHHHHHHhcC-CCcccccccccccCccccCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYA-YVLGVGGIIYTITDVEELGDWMRSCLENH-PMFEALTKEELEADPVVKLL  223 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~-~~LkpgG~l~~~td~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~  223 (252)
                      |++...-.+...        ...+++++. ++|||||.+++.+.+..........+... +..........  .+.....
T Consensus       107 v~~~~~l~~~~~--------~~~~l~~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  176 (250)
T 2p7i_A          107 IVLTHVLEHIDD--------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEF--AHGHRCT  176 (250)
T ss_dssp             EEEESCGGGCSS--------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHH--HTTCCCC
T ss_pred             EEEhhHHHhhcC--------HHHHHHHHHHHhcCCCCEEEEEcCChHHHHHHHHHHcCccccchhcccccc--ccccccc
Confidence            998653322211        136999999 99999999999887655443333322111 11111111000  0111112


Q ss_pred             CCCCHHHHHHHHcCCCeEEEEE
Q 025470          224 SSATEEGQKVARNGGQTFQAVF  245 (252)
Q Consensus       224 ~~~t~~e~~~~~~G~~i~~~~~  245 (252)
                      ....+++......|.++-....
T Consensus       177 ~~~~~~~~~l~~~Gf~~~~~~~  198 (250)
T 2p7i_A          177 YALDTLERDASRAGLQVTYRSG  198 (250)
T ss_dssp             CCHHHHHHHHHHTTCEEEEEEE
T ss_pred             CCHHHHHHHHHHCCCeEEEEee
Confidence            3455778888899998766543

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.58  E-value=8.4e-15  Score=120.53  Aligned_cols=151  Identities=17%  Similarity=0.252  Sum_probs=105.1

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      .|||||||+|.++..+++. ++..++|+|+++.+++.|++++...      +. +|+.++++|+.. ++  ++++++|.|
T Consensus        46 ~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~-~~--~~~~~~D~v  115 (219)
T 3dlc_A           46 TCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIADA------NLNDRIQIVQGDVHN-IP--IEDNYADLI  115 (219)
T ss_dssp             EEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECBTTB-CS--SCTTCEEEE
T ss_pred             EEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHhc------cccCceEEEEcCHHH-CC--CCcccccEE
Confidence            8999999999999999999 7889999999999999999887653      43 489999999863 44  668899999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc--hHHHHHHHHHHhc-CCCcccccccccccCccccCC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV--EELGDWMRSCLEN-HPMFEALTKEELEADPVVKLL  223 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~p~~~~~  223 (252)
                      +++..-.+...        ...+++++.++|+|||.+++....  ..........+.. .+.|...... . ..+     
T Consensus       116 ~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~-----  180 (219)
T 3dlc_A          116 VSRGSVFFWED--------VATAFREIYRILKSGGKTYIGGGFGNKELRDSISAEMIRKNPDWKEFNRK-N-ISQ-----  180 (219)
T ss_dssp             EEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHH-H-SSH-----
T ss_pred             EECchHhhccC--------HHHHHHHHHHhCCCCCEEEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhh-c-ccc-----
Confidence            99865444321        136999999999999999997532  2333333333322 2222211000 0 000     


Q ss_pred             CCCCHHHHHHHHcCCCeEEE
Q 025470          224 SSATEEGQKVARNGGQTFQA  243 (252)
Q Consensus       224 ~~~t~~e~~~~~~G~~i~~~  243 (252)
                      ....+++....+.|..+..+
T Consensus       181 ~~~~~~~~~l~~aGf~~v~~  200 (219)
T 3dlc_A          181 ENVERFQNVLDEIGISSYEI  200 (219)
T ss_dssp             HHHHHHHHHHHHHTCSSEEE
T ss_pred             CCHHHHHHHHHHcCCCeEEE
Confidence            23356777788888876443

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.58  E-value=2.9e-15  Score=123.66  Aligned_cols=111  Identities=11%  Similarity=-0.004  Sum_probs=77.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh---cC---CCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV---SN---PGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~---~~---~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      ...|||+|||+|..+..||++  +..|+|||+|+.|++.|+++......   ..   .....|+.++++|+.+ ++  ++
T Consensus        23 ~~~vLD~GCG~G~~~~~la~~--g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-l~--~~   97 (203)
T 1pjz_A           23 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA-LT--AR   97 (203)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS-ST--HH
T ss_pred             CCEEEEeCCCCcHhHHHHHHC--CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECcccc-CC--cc
Confidence            458999999999999999998  67899999999999998765311000   00   0013589999999863 43  33


Q ss_pred             C-CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 K-GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~-~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      + +++|.|+....-.+...      -....++++++++|||||++++.+
T Consensus        98 ~~~~fD~v~~~~~l~~l~~------~~~~~~l~~~~r~LkpgG~~~l~~  140 (203)
T 1pjz_A           98 DIGHCAAFYDRAAMIALPA------DMRERYVQHLEALMPQACSGLLIT  140 (203)
T ss_dssp             HHHSEEEEEEESCGGGSCH------HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cCCCEEEEEECcchhhCCH------HHHHHHHHHHHHHcCCCcEEEEEE
Confidence            3 78999997543222110      011358999999999999855544

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.58  E-value=7.6e-15  Score=125.52  Aligned_cols=103  Identities=18%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+. +...++|+|+|+.+++.|++++...      ++ +++.++.+|+.+ ++  ++++++|
T Consensus        47 ~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~~~~~fD  116 (267)
T 3kkz_A           47 KSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNARQS------GLQNRVTGIVGSMDD-LP--FRNEELD  116 (267)
T ss_dssp             TCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTTS-CC--CCTTCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHHHc------CCCcCcEEEEcChhh-CC--CCCCCEE
Confidence            458999999999999999999 7789999999999999999887653      44 469999999863 44  5678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++..-.+..         ...+++++.++|||||.+++.+
T Consensus       117 ~i~~~~~~~~~~---------~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          117 LIWSEGAIYNIG---------FERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             EEEESSCGGGTC---------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEEcCCceecC---------HHHHHHHHHHHcCCCCEEEEEE
Confidence            999876543321         2369999999999999999976

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.58  E-value=1.3e-14  Score=122.37  Aligned_cols=103  Identities=18%  Similarity=0.300  Sum_probs=84.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++...+  .++|+|+++.+++.|++++...      +.+|+.++.+|+.. ++  ++++++|.
T Consensus        22 ~~~vLDiGcG~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~-~~--~~~~~fD~   90 (239)
T 1xxl_A           22 EHRVLDIGAGAGHTALAFSPYVQ--ECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAES-LP--FPDDSFDI   90 (239)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTB-CC--SCTTCEEE
T ss_pred             CCEEEEEccCcCHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHc------CCCCeEEEeccccc-CC--CCCCcEEE
Confidence            45899999999999999999864  8999999999999998887654      66799999999863 54  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++...-.+...        ...+++++.++|||||.+++..
T Consensus        91 v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~  124 (239)
T 1xxl_A           91 ITCRYAAHHFSD--------VRKAVREVARVLKQDGRFLLVD  124 (239)
T ss_dssp             EEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCchhhccC--------HHHHHHHHHHHcCCCcEEEEEE
Confidence            998764333211        1369999999999999999964

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.58  E-value=1e-14  Score=122.38  Aligned_cols=101  Identities=22%  Similarity=0.293  Sum_probs=82.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+++.+++.|+++.         ...++.++.+|+.. ++  ++++++|.
T Consensus        54 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~-~~--~~~~~fD~  119 (242)
T 3l8d_A           54 EAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG---------EGPDLSFIKGDLSS-LP--FENEQFEA  119 (242)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT---------CBTTEEEEECBTTB-CS--SCTTCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc---------ccCCceEEEcchhc-CC--CCCCCccE
Confidence            458999999999999999998  668999999999998876532         45789999999873 44  66889999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++...-.+...        ...+++++.++|+|||.+++.+.
T Consensus       120 v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~  154 (242)
T 3l8d_A          120 IMAINSLEWTEE--------PLRALNEIKRVLKSDGYACIAIL  154 (242)
T ss_dssp             EEEESCTTSSSC--------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcChHhhccC--------HHHHHHHHHHHhCCCeEEEEEEc
Confidence            998765444321        12699999999999999999873

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.58  E-value=7.1e-15  Score=122.57  Aligned_cols=129  Identities=13%  Similarity=0.177  Sum_probs=90.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccC---CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYF---EK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~---~~  140 (252)
                      ...|||||||+|.+++.+|+..+ +..++|||+++.+++.|++++...      ++. ++.++.+|+.+.++...   ..
T Consensus        59 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~l~~~~~~~~~  132 (221)
T 3u81_A           59 PSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFA------GLQDKVTILNGASQDLIPQLKKKYDV  132 (221)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH------TCGGGEEEEESCHHHHGGGTTTTSCC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHc------CCCCceEEEECCHHHHHHHHHHhcCC
Confidence            34899999999999999999864 789999999999999999988765      554 69999999976554321   12


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~  209 (252)
                      +++|.|++.....+..        ....+++.+ ++|+|||.|++..-...-.....+.+..++.|...
T Consensus       133 ~~fD~V~~d~~~~~~~--------~~~~~~~~~-~~LkpgG~lv~~~~~~~~~~~~~~~l~~~~~~~~~  192 (221)
T 3u81_A          133 DTLDMVFLDHWKDRYL--------PDTLLLEKC-GLLRKGTVLLADNVIVPGTPDFLAYVRGSSSFECT  192 (221)
T ss_dssp             CCCSEEEECSCGGGHH--------HHHHHHHHT-TCCCTTCEEEESCCCCCCCHHHHHHHHHCTTEEEE
T ss_pred             CceEEEEEcCCcccch--------HHHHHHHhc-cccCCCeEEEEeCCCCcchHHHHHHHhhCCCceEE
Confidence            7899999865332211        011356666 99999999987432211122334455555555433

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.57  E-value=3.2e-14  Score=117.81  Aligned_cols=147  Identities=15%  Similarity=0.216  Sum_probs=100.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+++.+++.|++++         . .++.++.+|+.. ++  ++ +++|.
T Consensus        46 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~---------~-~~~~~~~~d~~~-~~--~~-~~fD~  109 (220)
T 3hnr_A           46 FGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKL---------P-KEFSITEGDFLS-FE--VP-TSIDT  109 (220)
T ss_dssp             CSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHS---------C-TTCCEESCCSSS-CC--CC-SCCSE
T ss_pred             CCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhC---------C-CceEEEeCChhh-cC--CC-CCeEE
Confidence            458999999999999999998  679999999999998887643         2 589999999864 43  33 89999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe---CchHHHHHHHHHHhcCCCcccccccccccCccccC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT---DVEELGDWMRSCLENHPMFEALTKEELEADPVVKL  222 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t---d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  222 (252)
                      |+++..-.+.....      ...+++++.++|||||.+++.+   +...........+...+ +...... ..    ...
T Consensus       110 v~~~~~l~~~~~~~------~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~----~~~  177 (220)
T 3hnr_A          110 IVSTYAFHHLTDDE------KNVAIAKYSQLLNKGGKIVFADTIFADQDAYDKTVEAAKQRG-FHQLAND-LQ----TEY  177 (220)
T ss_dssp             EEEESCGGGSCHHH------HHHHHHHHHHHSCTTCEEEEEEECBSSHHHHHHHHHHHHHTT-CHHHHHH-HH----HSC
T ss_pred             EEECcchhcCChHH------HHHHHHHHHHhcCCCCEEEEEeccccChHHHHHHHHHHHhCC-Cccchhh-cc----hhh
Confidence            99876543322110      1249999999999999999984   33344444444444333 2222111 00    011


Q ss_pred             CCCCCHHHHHHHHcCCCe
Q 025470          223 LSSATEEGQKVARNGGQT  240 (252)
Q Consensus       223 ~~~~t~~e~~~~~~G~~i  240 (252)
                      .....+++....+.|.++
T Consensus       178 ~~~~~~~~~~l~~aGf~v  195 (220)
T 3hnr_A          178 YTRIPVMQTIFENNGFHV  195 (220)
T ss_dssp             CCBHHHHHHHHHHTTEEE
T ss_pred             cCCHHHHHHHHHHCCCEE
Confidence            124457888888888865

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.57  E-value=1.4e-14  Score=125.99  Aligned_cols=104  Identities=18%  Similarity=0.243  Sum_probs=85.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC----
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK----  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~----  140 (252)
                      ...|||||||+|.++..+++.+ +...++|+|+|+.+++.|++++...    .....|+.++++|+.+ ++  +.+    
T Consensus        37 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----~~~~~~v~~~~~d~~~-~~--~~~~~~~  109 (299)
T 3g5t_A           37 RKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS----PDTYKNVSFKISSSDD-FK--FLGADSV  109 (299)
T ss_dssp             CSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC----C-CCTTEEEEECCTTC-CG--GGCTTTT
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc----cCCCCceEEEEcCHHh-CC--ccccccc
Confidence            4589999999999999999986 8899999999999999998876541    1235789999999874 43  334    


Q ss_pred             --CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          141 --GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       141 --~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                        +++|.|+++..-.|. .        ...+++++.++|+|||.|++
T Consensus       110 ~~~~fD~V~~~~~l~~~-~--------~~~~l~~~~~~LkpgG~l~i  147 (299)
T 3g5t_A          110 DKQKIDMITAVECAHWF-D--------FEKFQRSAYANLRKDGTIAI  147 (299)
T ss_dssp             TSSCEEEEEEESCGGGS-C--------HHHHHHHHHHHEEEEEEEEE
T ss_pred             cCCCeeEEeHhhHHHHh-C--------HHHHHHHHHHhcCCCcEEEE
Confidence              899999998765554 1        23699999999999999988

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.57  E-value=6.9e-15  Score=122.47  Aligned_cols=104  Identities=17%  Similarity=0.184  Sum_probs=83.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCC---
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEK---  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~---  140 (252)
                      ...|||||||+|.++..+|+..| +..++|+|+++.+++.|++++...      ++. ++.++++|+.+.++.....   
T Consensus        65 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~~  138 (225)
T 3tr6_A           65 AKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA------GLSDKIGLRLSPAKDTLAELIHAGQA  138 (225)
T ss_dssp             CSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCHHHHHHHHHTTTCT
T ss_pred             CCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC------CCCCceEEEeCCHHHHHHHhhhccCC
Confidence            34899999999999999999987 789999999999999999887654      554 5999999997654422111   


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +++|.|++..+.+.           ...+++.+.++|+|||.|++.
T Consensus       139 ~~fD~v~~~~~~~~-----------~~~~l~~~~~~L~pgG~lv~~  173 (225)
T 3tr6_A          139 WQYDLIYIDADKAN-----------TDLYYEESLKLLREGGLIAVD  173 (225)
T ss_dssp             TCEEEEEECSCGGG-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccEEEECCCHHH-----------HHHHHHHHHHhcCCCcEEEEe
Confidence            78999997654211           236999999999999999874

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.57  E-value=9.6e-15  Score=119.96  Aligned_cols=101  Identities=18%  Similarity=0.205  Sum_probs=84.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++...|+..++|+|+++.+++.|++++...      +++|+.++++|+.. +   .+++++|.
T Consensus        66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------~~~~v~~~~~d~~~-~---~~~~~~D~  135 (207)
T 1jsx_A           66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEE-F---PSEPPFDG  135 (207)
T ss_dssp             SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTT-S---CCCSCEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEecchhh-C---CccCCcCE
Confidence            35899999999999999999999999999999999999999887653      67789999999864 2   23578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++.-.++            ..+++.+.++|+|||.+++...
T Consensus       136 i~~~~~~~~------------~~~l~~~~~~L~~gG~l~~~~~  166 (207)
T 1jsx_A          136 VISRAFASL------------NDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             EECSCSSSH------------HHHHHHHTTSEEEEEEEEEEES
T ss_pred             EEEeccCCH------------HHHHHHHHHhcCCCcEEEEEeC
Confidence            987532222            2699999999999999999764

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.57  E-value=2.3e-14  Score=124.82  Aligned_cols=106  Identities=16%  Similarity=0.189  Sum_probs=84.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+.++ ..++|+|+|+.+++.|++++...      ++. ++.++.+|+.+ +     ++++|
T Consensus        73 ~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~-----~~~fD  139 (302)
T 3hem_A           73 GMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEV------DSPRRKEVRIQGWEE-F-----DEPVD  139 (302)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHS------CCSSCEEEEECCGGG-C-----CCCCS
T ss_pred             cCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEECCHHH-c-----CCCcc
Confidence            45899999999999999999976 78999999999999999887653      454 89999999864 2     67899


Q ss_pred             EEEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|+++     +|||+.....    -....+++++.++|||||.+++.+.
T Consensus       140 ~v~~~~~~~~~~d~~~~~~~----~~~~~~l~~~~~~LkpgG~l~i~~~  184 (302)
T 3hem_A          140 RIVSLGAFEHFADGAGDAGF----ERYDTFFKKFYNLTPDDGRMLLHTI  184 (302)
T ss_dssp             EEEEESCGGGTTCCSSCCCT----THHHHHHHHHHHSSCTTCEEEEEEE
T ss_pred             EEEEcchHHhcCccccccch----hHHHHHHHHHHHhcCCCcEEEEEEE
Confidence            99985     4555311000    0123699999999999999999764

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.56  E-value=1.2e-14  Score=120.50  Aligned_cols=108  Identities=19%  Similarity=0.144  Sum_probs=82.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-----cEEEEeCCcccccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-----NISVVRTNSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-----nv~~~~~da~~~l~~~~~~  140 (252)
                      ...|||||||+|.++..+++..|...++|+|+|+.+++.|++++...      +++     ++.++.+|+. .++  +.+
T Consensus        30 ~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~~~v~~~~~d~~-~~~--~~~  100 (219)
T 3jwg_A           30 AKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID------RLPEMQRKRISLFQSSLV-YRD--KRF  100 (219)
T ss_dssp             CCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG------GSCHHHHTTEEEEECCSS-SCC--GGG
T ss_pred             CCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh------ccccccCcceEEEeCccc-ccc--ccc
Confidence            45899999999999999999988889999999999999998876432      332     8999999984 333  456


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      +++|.|+++..-.+....      ....+++++.++|||||.++ .+++
T Consensus       101 ~~fD~V~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~~i-~~~~  142 (219)
T 3jwg_A          101 SGYDAATVIEVIEHLDEN------RLQAFEKVLFEFTRPQTVIV-STPN  142 (219)
T ss_dssp             TTCSEEEEESCGGGCCHH------HHHHHHHHHHTTTCCSEEEE-EEEB
T ss_pred             CCCCEEEEHHHHHhCCHH------HHHHHHHHHHHhhCCCEEEE-Eccc
Confidence            899999986543222100      01269999999999999554 4554

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.56  E-value=2.1e-14  Score=125.49  Aligned_cols=129  Identities=15%  Similarity=0.088  Sum_probs=93.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++..+...+++||+++.+++.|++++.....  ....+++.++.+|+...+..  .++++|.|
T Consensus        92 ~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~l~~--~~~~fD~I  167 (296)
T 1inl_A           92 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRK--FKNEFDVI  167 (296)
T ss_dssp             CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGG--CSSCEEEE
T ss_pred             CEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhh--CCCCceEE
Confidence            589999999999999999987788999999999999999987654210  01236899999998765542  35789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~  202 (252)
                      +++.++||..   ....+....+++.+.++|+|||.+++.+.+    .+....+.+.+.+
T Consensus       168 i~d~~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~  224 (296)
T 1inl_A          168 IIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRISK  224 (296)
T ss_dssp             EEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHHH
T ss_pred             EEcCCCcccC---chhhhhHHHHHHHHHHhcCCCcEEEEEccCcccCHHHHHHHHHHHHH
Confidence            9999888542   123345678999999999999999998654    2334445555543

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.56  E-value=1.8e-14  Score=121.03  Aligned_cols=106  Identities=13%  Similarity=0.093  Sum_probs=83.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+.. |...++|+|+++.+++.+.+++..        ..|+.++.+|+.+.....+.++++|
T Consensus        78 ~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~--------~~~v~~~~~d~~~~~~~~~~~~~~D  149 (233)
T 2ipx_A           78 GAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKK--------RTNIIPVIEDARHPHKYRMLIAMVD  149 (233)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHH--------CTTEEEECSCTTCGGGGGGGCCCEE
T ss_pred             CCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhc--------cCCeEEEEcccCChhhhcccCCcEE
Confidence            5589999999999999999985 678999999999988777665432        1689999999874221123467899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|+++.+.|+..          ..++.++.++|||||.+++.+..
T Consensus       150 ~V~~~~~~~~~~----------~~~~~~~~~~LkpgG~l~i~~~~  184 (233)
T 2ipx_A          150 VIFADVAQPDQT----------RIVALNAHTFLRNGGHFVISIKA  184 (233)
T ss_dssp             EEEECCCCTTHH----------HHHHHHHHHHEEEEEEEEEEEEH
T ss_pred             EEEEcCCCccHH----------HHHHHHHHHHcCCCeEEEEEEcc
Confidence            999988866521          24688999999999999997643

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.56  E-value=9.9e-15  Score=120.27  Aligned_cols=108  Identities=16%  Similarity=0.202  Sum_probs=83.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccCCCCc-
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYFEKGQ-  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~~~~s-  142 (252)
                      ...|||+|||+|.+++.++... ...++|+|+|+.|++.|++++...      ++  +|+.++++|+.+.+. .+.+++ 
T Consensus        54 ~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~~~------~~~~~~v~~~~~d~~~~~~-~~~~~~~  125 (201)
T 2ift_A           54 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTL------KCSSEQAEVINQSSLDFLK-QPQNQPH  125 (201)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHT------TCCTTTEEEECSCHHHHTT-SCCSSCC
T ss_pred             CCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHHHh------CCCccceEEEECCHHHHHH-hhccCCC
Confidence            3589999999999999988774 358999999999999999987653      56  689999999875433 234578 


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHH--HHhhcCCcEEEEEeCch
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEY--AYVLGVGGIIYTITDVE  190 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~--~~~LkpgG~l~~~td~~  190 (252)
                      +|.|+++.|  +...       ....+++.+  .++|+|||.+++.+...
T Consensus       126 fD~I~~~~~--~~~~-------~~~~~l~~~~~~~~LkpgG~l~i~~~~~  166 (201)
T 2ift_A          126 FDVVFLDPP--FHFN-------LAEQAISLLCENNWLKPNALIYVETEKD  166 (201)
T ss_dssp             EEEEEECCC--SSSC-------HHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred             CCEEEECCC--CCCc-------cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            999998766  2110       123578888  66799999999988654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.56  E-value=2.9e-14  Score=128.65  Aligned_cols=123  Identities=11%  Similarity=0.133  Sum_probs=93.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc---cEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ---NISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~---nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...|||+|||+|.+++.+++.+|+..++|||+|+.+++.|++++...      ++.   ++.|+.+|+..    .+++++
T Consensus       223 ~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n------gl~~~~~v~~~~~D~~~----~~~~~~  292 (375)
T 4dcm_A          223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN------MPEALDRCEFMINNALS----GVEPFR  292 (375)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------CGGGGGGEEEEECSTTT----TCCTTC
T ss_pred             CCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc------CCCcCceEEEEechhhc----cCCCCC
Confidence            36899999999999999999999999999999999999999988764      443   69999999864    355789


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHHh
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCLE  201 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~~  201 (252)
                      +|.|+++.|-.+..   ...+-....+++++.++|+|||.++++.+. ..|...+.+.+.
T Consensus       293 fD~Ii~nppfh~~~---~~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~~~~~~l~~~fg  349 (375)
T 4dcm_A          293 FNAVLCNPPFHQQH---ALTDNVAWEMFHHARRCLKINGELYIVANRHLDYFHKLKKIFG  349 (375)
T ss_dssp             EEEEEECCCC----------CCHHHHHHHHHHHHEEEEEEEEEEEETTSCHHHHHHHHHS
T ss_pred             eeEEEECCCcccCc---ccCHHHHHHHHHHHHHhCCCCcEEEEEEECCcCHHHHHHHhcC
Confidence            99999987643211   111112236899999999999999998754 345555555553

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.56  E-value=2.2e-14  Score=124.34  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=85.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. +..++|+|+++.+++.|++++...      ++ +++.++.+|+.. ++  ++++++|
T Consensus        83 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~-~~--~~~~~fD  152 (297)
T 2o57_A           83 QAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA------GLADNITVKYGSFLE-IP--CEDNSYD  152 (297)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH------TCTTTEEEEECCTTS-CS--SCTTCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEEcCccc-CC--CCCCCEe
Confidence            4589999999999999999986 468999999999999999877654      44 579999999863 44  6678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-.+...        ...+++++.++|||||.|++.+
T Consensus       153 ~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~  187 (297)
T 2o57_A          153 FIWSQDAFLHSPD--------KLKVFQECARVLKPRGVMAITD  187 (297)
T ss_dssp             EEEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEecchhhhcCC--------HHHHHHHHHHHcCCCeEEEEEE
Confidence            9998754333211        1369999999999999999975

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.55  E-value=3.2e-14  Score=119.39  Aligned_cols=102  Identities=11%  Similarity=0.142  Sum_probs=80.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC-ccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP-NYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~-~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+..+...++|+|+++.+++.|++++.        ..+|+.++.+|+..... ..+. +++|
T Consensus        75 ~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~--------~~~~v~~~~~d~~~~~~~~~~~-~~~D  145 (230)
T 1fbn_A           75 DSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA--------ERENIIPILGDANKPQEYANIV-EKVD  145 (230)
T ss_dssp             TCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT--------TCTTEEEEECCTTCGGGGTTTS-CCEE
T ss_pred             CCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhh--------cCCCeEEEECCCCCcccccccC-ccEE
Confidence            568999999999999999999877899999999999998876542        22789999999864111 1133 6899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+..+++|-.          ...+++++.++|+|||.+++.
T Consensus       146 ~v~~~~~~~~~----------~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          146 VIYEDVAQPNQ----------AEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             EEEECCCSTTH----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEEecCChhH----------HHHHHHHHHHhCCCCcEEEEE
Confidence            99976665521          125899999999999999995

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.55  E-value=3.6e-15  Score=125.50  Aligned_cols=109  Identities=9%  Similarity=0.062  Sum_probs=81.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+ ..++|+|+|+.|++.|+++...      .+ .|+.++++|+.+.+ ..++++++|.
T Consensus        61 ~~~vLDiGcGtG~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~------~~-~~v~~~~~d~~~~~-~~~~~~~fD~  131 (236)
T 1zx0_A           61 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR------QT-HKVIPLKGLWEDVA-PTLPDGHFDG  131 (236)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG------CS-SEEEEEESCHHHHG-GGSCTTCEEE
T ss_pred             CCeEEEEeccCCHHHHHHHhcCC-CeEEEEcCCHHHHHHHHHHHHh------cC-CCeEEEecCHHHhh-cccCCCceEE
Confidence            56899999999999999977643 4899999999999999876532      13 68999999997532 2367889999


Q ss_pred             EEE-eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFF-LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~-~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++ .++. .....|.   .....+++++.++|||||+|++..
T Consensus       132 V~~d~~~~-~~~~~~~---~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          132 ILYDTYPL-SEETWHT---HQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             EEECCCCC-BGGGTTT---HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             EEECCccc-chhhhhh---hhHHHHHHHHHHhcCCCeEEEEEe
Confidence            998 4443 1111110   011357999999999999998753

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.55  E-value=4.6e-14  Score=114.65  Aligned_cols=104  Identities=14%  Similarity=0.118  Sum_probs=84.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+++.+++.|++++...      +.+|+.++.+|+.. ++  + ++++|.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~-~~--~-~~~~D~  100 (199)
T 2xvm_A           33 PGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKSIE------NLDNLHTRVVDLNN-LT--F-DRQYDF  100 (199)
T ss_dssp             SCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEECCGGG-CC--C-CCCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhC------CCCCcEEEEcchhh-CC--C-CCCceE
Confidence            348999999999999999998  679999999999999999887654      56789999999874 43  3 788999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.+....      ....+++++.++|+|||.+++.+
T Consensus       101 v~~~~~l~~~~~~------~~~~~l~~~~~~L~~gG~l~~~~  136 (199)
T 2xvm_A          101 ILSTVVLMFLEAK------TIPGLIANMQRCTKPGGYNLIVA  136 (199)
T ss_dssp             EEEESCGGGSCGG------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEcchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEE
Confidence            9988654332211      12469999999999999988765

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.55  E-value=3.6e-14  Score=121.39  Aligned_cols=104  Identities=23%  Similarity=0.394  Sum_probs=85.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. +..++|+|+|+.+++.|++++...      ++ +++.++.+|+.+ ++  ++++++|
T Consensus        62 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~-~~--~~~~~fD  131 (273)
T 3bus_A           62 GDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARATAA------GLANRVTFSYADAMD-LP--FEDASFD  131 (273)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTTS-CC--SCTTCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHHhc------CCCcceEEEECcccc-CC--CCCCCcc
Confidence            4589999999999999999987 679999999999999998877553      44 479999999864 44  6678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-.+....        ..+++++.++|||||.+++.+
T Consensus       132 ~v~~~~~l~~~~~~--------~~~l~~~~~~L~pgG~l~i~~  166 (273)
T 3bus_A          132 AVWALESLHHMPDR--------GRALREMARVLRPGGTVAIAD  166 (273)
T ss_dssp             EEEEESCTTTSSCH--------HHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEEechhhhCCCH--------HHHHHHHHHHcCCCeEEEEEE
Confidence            99987654443211        369999999999999999876

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=99.55  E-value=1.4e-14  Score=127.56  Aligned_cols=110  Identities=9%  Similarity=0.124  Sum_probs=90.9

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .|||||||.|.++..+++.+|+..+++||+++.+++.|++++..      ...++++++.+|+.+.+.. ++++++|.|+
T Consensus        92 rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~------~~~~rv~v~~~Da~~~l~~-~~~~~fDvIi  164 (317)
T 3gjy_A           92 RITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDI------PRAPRVKIRVDDARMVAES-FTPASRDVII  164 (317)
T ss_dssp             EEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCC------CCTTTEEEEESCHHHHHHT-CCTTCEEEEE
T ss_pred             EEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccc------cCCCceEEEECcHHHHHhh-ccCCCCCEEE
Confidence            89999999999999999999999999999999999999876521      2356899999999865532 4567999999


Q ss_pred             EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +...+++.-    ...+....|++.+.++|+|||.|++.+-
T Consensus       165 ~D~~~~~~~----~~~L~t~efl~~~~r~LkpgGvlv~~~~  201 (317)
T 3gjy_A          165 RDVFAGAIT----PQNFTTVEFFEHCHRGLAPGGLYVANCG  201 (317)
T ss_dssp             ECCSTTSCC----CGGGSBHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ECCCCcccc----chhhhHHHHHHHHHHhcCCCcEEEEEec
Confidence            987777632    1234567899999999999999998764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.55  E-value=1.8e-14  Score=126.26  Aligned_cols=122  Identities=13%  Similarity=0.102  Sum_probs=84.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc-----cccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM-----KYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~-----~~l~~~~~~  140 (252)
                      ...|||||||+|..+..++... ...|+|||+|+.|++.|+++............-++.|.+.|+.     +.++..+++
T Consensus        49 ~~~VLDlGCG~G~~l~~~~~~~-~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           49 KRKVLAIDFGNGADLEKYFYGE-IALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             CCEEEETTCTTTTTHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCeEEEEecCCcHhHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            4589999999998777776653 4689999999999999998765530000000114678787762     123334567


Q ss_pred             CcccEEEEeCCCCcc-ccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025470          141 GQLTKMFFLFPDPHF-KEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD  194 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~-k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~  194 (252)
                      +++|.|++.+.-.+. ...|      ...++++++++|||||.|++.|.+.+...
T Consensus       128 ~~FD~V~~~~~lhy~~~~~~------~~~~l~~~~r~LkpGG~~i~~~~~~~~~~  176 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYSFHPRH------YATVMNNLSELTASGGKVLITTMDGDKLS  176 (302)
T ss_dssp             SCEEEEEEESCGGGTCSTTT------HHHHHHHHHHHEEEEEEEEEEEECHHHHT
T ss_pred             CCeeEEEECchHHHhCCHHH------HHHHHHHHHHHcCCCCEEEEEeCCHHHHH
Confidence            899999987643221 1011      13799999999999999999998765543

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.55  E-value=1.9e-14  Score=127.89  Aligned_cols=117  Identities=16%  Similarity=0.215  Sum_probs=92.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|...+++||+++.+++.|++++.....  ....+++.++.+|+.+.+.. ++++++|.
T Consensus       121 ~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~--gl~~~rv~~~~~D~~~~l~~-~~~~~fDl  197 (334)
T 1xj5_A          121 PKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKN-AAEGSYDA  197 (334)
T ss_dssp             CCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHT-SCTTCEEE
T ss_pred             CCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhcc--ccCCCcEEEEECCHHHHHHh-ccCCCccE
Confidence            3589999999999999999987888999999999999999987654200  00135899999999765432 34678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |+++.++|+...    ..+....+++.+.++|+|||.|++.+++
T Consensus       198 Ii~d~~~p~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~~~  237 (334)
T 1xj5_A          198 VIVDSSDPIGPA----KELFEKPFFQSVARALRPGGVVCTQAES  237 (334)
T ss_dssp             EEECCCCTTSGG----GGGGSHHHHHHHHHHEEEEEEEEEECCC
T ss_pred             EEECCCCccCcc----hhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence            999988887422    2244678999999999999999998654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.55  E-value=1e-14  Score=115.81  Aligned_cols=106  Identities=17%  Similarity=0.160  Sum_probs=82.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-CCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-EKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-~~~s~d  144 (252)
                      ...|||+|||+|.++..+++..+.  ++|+|+++.+++.|++++...      ++ |+.++++|+.+.++... ..+++|
T Consensus        42 ~~~vLD~GcG~G~~~~~l~~~~~~--v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~~~~~~~~~~~~~D  112 (171)
T 1ws6_A           42 RGRFLDPFAGSGAVGLEAASEGWE--AVLVEKDPEAVRLLKENVRRT------GL-GARVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHTTCE--EEEECCCHHHHHHHHHHHHHH------TC-CCEEECSCHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEeCCCcCHHHHHHHHCCCe--EEEEeCCHHHHHHHHHHHHHc------CC-ceEEEeccHHHHHHhhhccCCceE
Confidence            458999999999999999998654  999999999999999888664      45 89999999875333211 124799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHH--HhhcCCcEEEEEeCch
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYA--YVLGVGGIIYTITDVE  190 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~--~~LkpgG~l~~~td~~  190 (252)
                      .|+++.|-. .         ....+++.+.  ++|+|||.+++.+...
T Consensus       113 ~i~~~~~~~-~---------~~~~~~~~~~~~~~L~~gG~~~~~~~~~  150 (171)
T 1ws6_A          113 VAFMAPPYA-M---------DLAALFGELLASGLVEAGGLYVLQHPKD  150 (171)
T ss_dssp             EEEECCCTT-S---------CTTHHHHHHHHHTCEEEEEEEEEEEETT
T ss_pred             EEEECCCCc-h---------hHHHHHHHHHhhcccCCCcEEEEEeCCc
Confidence            999875421 0         1225777787  9999999999988653

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.55  E-value=9.1e-15  Score=127.28  Aligned_cols=122  Identities=14%  Similarity=0.189  Sum_probs=85.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcC-----------------------------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN-----------------------------  116 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~-----------------------------  116 (252)
                      ...|||||||+|.++..+|..++...++|||+++.+++.|++++.......                             
T Consensus        47 ~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (292)
T 3g07_A           47 GRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCF  126 (292)
T ss_dssp             TSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC------------------------------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccccc
Confidence            458999999999999999999998999999999999999988754321000                             


Q ss_pred             ----------------------CCCc-ccEEEEeCCcccccCc--cCCCCcccEEEEeCCCCccccccccccccCHHHHH
Q 025470          117 ----------------------PGQY-QNISVVRTNSMKYIPN--YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLD  171 (252)
Q Consensus       117 ----------------------~~~~-~nv~~~~~da~~~l~~--~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~  171 (252)
                                            .... .||.|+++|+......  .+.++++|.|++.....|..-.+  .......+++
T Consensus       127 p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~--~~~~~~~~l~  204 (292)
T 3g07_A          127 PASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNW--GDEGLKRMFR  204 (292)
T ss_dssp             ---------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHH--HHHHHHHHHH
T ss_pred             cchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcC--CHHHHHHHHH
Confidence                                  0001 4899999998631100  13578999999877554431000  0001235999


Q ss_pred             HHHHhhcCCcEEEEEeCc
Q 025470          172 EYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       172 ~~~~~LkpgG~l~~~td~  189 (252)
                      ++.++|+|||.|++.+..
T Consensus       205 ~~~~~LkpGG~lil~~~~  222 (292)
T 3g07_A          205 RIYRHLRPGGILVLEPQP  222 (292)
T ss_dssp             HHHHHEEEEEEEEEECCC
T ss_pred             HHHHHhCCCcEEEEecCC
Confidence            999999999999997643

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.54  E-value=3.8e-14  Score=124.89  Aligned_cols=133  Identities=12%  Similarity=0.127  Sum_probs=99.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+...++|||+++.+++.|++++..... .....++++++.+|+.+.++.  .++++|.
T Consensus        78 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~~~~~~~v~~~~~D~~~~l~~--~~~~fD~  154 (314)
T 1uir_A           78 PKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLER--TEERYDV  154 (314)
T ss_dssp             CCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHH--CCCCEEE
T ss_pred             CCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-ccccCCceEEEEchHHHHHHh--cCCCccE
Confidence            3489999999999999999987788999999999999999887654200 000146899999999765542  3678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-----hHHHHHHHHHHhc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-----EELGDWMRSCLEN  202 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-----~~~~~~~~~~~~~  202 (252)
                      |+++.++|+.. ......+....+++.+.++|+|||.+++.+..     .+....+.+.+..
T Consensus       155 Ii~d~~~~~~~-~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~~l~~  215 (314)
T 1uir_A          155 VIIDLTDPVGE-DNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVRE  215 (314)
T ss_dssp             EEEECCCCBST-TCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHT
T ss_pred             EEECCCCcccc-cCcchhccHHHHHHHHHHhcCCCcEEEEEccCccccCHHHHHHHHHHHHH
Confidence            99999988721 01123345678999999999999999997533     2345556666654

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.54  E-value=2e-14  Score=122.96  Aligned_cols=111  Identities=9%  Similarity=-0.036  Sum_probs=78.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH---hh--cCC------CCcccEEEEeCCccccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL---RV--SNP------GQYQNISVVRTNSMKYI  134 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~---~~--~~~------~~~~nv~~~~~da~~~l  134 (252)
                      ...|||+|||+|..+..||+.  +..|+|||+|+.|++.|+++....   ..  ...      ....++.++++|+.+ +
T Consensus        69 ~~~vLD~GCG~G~~~~~La~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~-l  145 (252)
T 2gb4_A           69 GLRVFFPLCGKAIEMKWFADR--GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD-L  145 (252)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT-G
T ss_pred             CCeEEEeCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc-C
Confidence            458999999999999999998  678999999999999886543100   00  000      023689999999874 4


Q ss_pred             CccCC-CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          135 PNYFE-KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       135 ~~~~~-~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +  +. .++||.|+....--+....      ....+++++.++|||||++++.|
T Consensus       146 ~--~~~~~~FD~V~~~~~l~~l~~~------~~~~~l~~~~~~LkpGG~l~l~~  191 (252)
T 2gb4_A          146 P--RANIGKFDRIWDRGALVAINPG------DHDRYADIILSLLRKEFQYLVAV  191 (252)
T ss_dssp             G--GGCCCCEEEEEESSSTTTSCGG------GHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             C--cccCCCEEEEEEhhhhhhCCHH------HHHHHHHHHHHHcCCCeEEEEEE
Confidence            3  22 3799999965332211100      12369999999999999997655

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.54  E-value=3.9e-14  Score=124.20  Aligned_cols=131  Identities=14%  Similarity=0.113  Sum_probs=94.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+...++|||+++.+++.|++++.....  ....+++.++.+|+...+.. ..++++|.
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~--~~~~~~v~~~~~D~~~~~~~-~~~~~fDv  172 (304)
T 3bwc_A           96 PERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR--SLADPRATVRVGDGLAFVRQ-TPDNTYDV  172 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHS-SCTTCEEE
T ss_pred             CCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHHh-ccCCceeE
Confidence            3589999999999999999887778999999999999999887643211  01346899999999754321 24678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~~  203 (252)
                      |+++.++|+..    ...+....+++.+.++|+|||.+++.+.+.    .....+.+.+.+.
T Consensus       173 Ii~d~~~~~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  230 (304)
T 3bwc_A          173 VIIDTTDPAGP----ASKLFGEAFYKDVLRILKPDGICCNQGESIWLDLELIEKMSRFIRET  230 (304)
T ss_dssp             EEEECC-------------CCHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHHH
T ss_pred             EEECCCCcccc----chhhhHHHHHHHHHHhcCCCcEEEEecCCcccchHHHHHHHHHHHhC
Confidence            99999887632    223445689999999999999999987653    2344455555443

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=99.54  E-value=2.9e-14  Score=126.02  Aligned_cols=130  Identities=13%  Similarity=0.088  Sum_probs=97.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|...++|+|+++.+++.|++++....  .....+++.++.+|+.+.+..  .++++|.
T Consensus       117 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~--~~~~~~~v~~~~~D~~~~l~~--~~~~fDv  192 (321)
T 2pt6_A          117 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS--CGYEDKRVNVFIEDASKFLEN--VTNTYDV  192 (321)
T ss_dssp             CCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS--GGGGSTTEEEEESCHHHHHHH--CCSCEEE
T ss_pred             CCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--cccCCCcEEEEEccHHHHHhh--cCCCceE
Confidence            358999999999999999988778899999999999999987653210  000136899999998764432  2578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~~  203 (252)
                      |+++.++|+..    ...+....+++.+.++|+|||.+++.+.+.    +....+.+.+.+.
T Consensus       193 Ii~d~~~p~~~----~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~~~~~~~~~l~~~  250 (321)
T 2pt6_A          193 IIVDSSDPIGP----AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKKL  250 (321)
T ss_dssp             EEEECCCSSSG----GGGGSSHHHHHHHHHHEEEEEEEEEEECCTTTCHHHHHHHHHHHHTT
T ss_pred             EEECCcCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHHH
Confidence            99999888732    223445789999999999999999976542    3445555555543

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.54  E-value=3e-14  Score=124.83  Aligned_cols=104  Identities=25%  Similarity=0.364  Sum_probs=86.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. +..++|+|+++.+++.|++++...      ++. |+.++.+|+.+ ++  ++++++|
T Consensus       118 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~~~~~fD  187 (312)
T 3vc1_A          118 DDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRAREL------RIDDHVRSRVCNMLD-TP--FDKGAVT  187 (312)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTTS-CC--CCTTCEE
T ss_pred             CCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHc------CCCCceEEEECChhc-CC--CCCCCEe
Confidence            5689999999999999999985 578999999999999999887653      444 89999999863 44  6678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|+.+..-.+..         ...+++++.++|||||.+++.+.
T Consensus       188 ~V~~~~~l~~~~---------~~~~l~~~~~~LkpgG~l~~~~~  222 (312)
T 3vc1_A          188 ASWNNESTMYVD---------LHDLFSEHSRFLKVGGRYVTITG  222 (312)
T ss_dssp             EEEEESCGGGSC---------HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEECCchhhCC---------HHHHHHHHHHHcCCCcEEEEEEc
Confidence            999875433321         24699999999999999999873

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.54  E-value=1.9e-14  Score=120.70  Aligned_cols=104  Identities=16%  Similarity=0.265  Sum_probs=85.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+..|+..++|+|+++.+++.|++++...      ++ .++.++.+|+.+.++....++.+|
T Consensus        55 ~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~fD  128 (233)
T 2gpy_A           55 PARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL------GLESRIELLFGDALQLGEKLELYPLFD  128 (233)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCGGGSHHHHTTSCCEE
T ss_pred             CCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECCHHHHHHhcccCCCcc
Confidence            45899999999999999999999899999999999999999887654      45 469999999875443222257899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+++.+.+.           ...+++.+.++|+|||.+++.
T Consensus       129 ~I~~~~~~~~-----------~~~~l~~~~~~L~pgG~lv~~  159 (233)
T 2gpy_A          129 VLFIDAAKGQ-----------YRRFFDMYSPMVRPGGLILSD  159 (233)
T ss_dssp             EEEEEGGGSC-----------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             EEEECCCHHH-----------HHHHHHHHHHHcCCCeEEEEE
Confidence            9999865331           236999999999999999885

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=99.54  E-value=4.9e-14  Score=121.95  Aligned_cols=130  Identities=16%  Similarity=0.130  Sum_probs=100.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+...+++||+++.+++.|++++.....  ....+++.++.+|+.+.+..  .++++|.
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~--~~~~~rv~v~~~D~~~~l~~--~~~~fD~  151 (275)
T 1iy9_A           76 PEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAG--KLDDPRVDVQVDDGFMHIAK--SENQYDV  151 (275)
T ss_dssp             CCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHT--TTTSTTEEEEESCSHHHHHT--CCSCEEE
T ss_pred             CCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhcc--ccCCCceEEEECcHHHHHhh--CCCCeeE
Confidence            3489999999999999999887778999999999999999987654310  11346899999999765542  2578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~~  203 (252)
                      |+++.++|+..    ...+....+++.+.++|+|||.+++.+.+    .+....+.+.+.+.
T Consensus       152 Ii~d~~~~~~~----~~~l~~~~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~~  209 (275)
T 1iy9_A          152 IMVDSTEPVGP----AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKEI  209 (275)
T ss_dssp             EEESCSSCCSC----CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHTT
T ss_pred             EEECCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCccccHHHHHHHHHHHHHh
Confidence            99998887632    22334568999999999999999998654    34455566666554

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.54  E-value=2.7e-14  Score=117.71  Aligned_cols=107  Identities=19%  Similarity=0.225  Sum_probs=83.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.++.+.. ..++|+|+++.|++.|++++...      +++|+.++++|+.+.++  ...+++|.
T Consensus        55 ~~~vLDlgcG~G~~~~~l~~~~~-~~V~~vD~s~~~l~~a~~~~~~~------~~~~v~~~~~D~~~~~~--~~~~~fD~  125 (202)
T 2fpo_A           55 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLA--QKGTPHNI  125 (202)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHS--SCCCCEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHhcCC-CEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEECCHHHHHh--hcCCCCCE
Confidence            45899999999999999887742 48999999999999999887654      56799999999876454  24578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td~~  190 (252)
                      |+++.|  +.. .      ....+++.+.+  +|+|||.|++.+...
T Consensus       126 V~~~~p--~~~-~------~~~~~l~~l~~~~~L~pgG~l~i~~~~~  163 (202)
T 2fpo_A          126 VFVDPP--FRR-G------LLEETINLLEDNGWLADEALIYVESEVE  163 (202)
T ss_dssp             EEECCS--SST-T------THHHHHHHHHHTTCEEEEEEEEEEEEGG
T ss_pred             EEECCC--CCC-C------cHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence            998765  211 0      12357788865  599999999988653

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.54  E-value=4.1e-14  Score=116.85  Aligned_cols=101  Identities=7%  Similarity=0.090  Sum_probs=82.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|.++..+|+..| +..++|+|+++.+++.|++++...      ++ +++.++.+|+.+.++. + ++ +
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~-~-~~-f  127 (210)
T 3c3p_A           57 PQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN------GLIDRVELQVGDPLGIAAG-Q-RD-I  127 (210)
T ss_dssp             CSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH------SGGGGEEEEESCHHHHHTT-C-CS-E
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC------CCCceEEEEEecHHHHhcc-C-CC-C
Confidence            34899999999999999999987 789999999999999999888664      44 4699999999765542 2 35 9


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|++..+...           ...+++.+.++|+|||.+++.
T Consensus       128 D~v~~~~~~~~-----------~~~~l~~~~~~LkpgG~lv~~  159 (210)
T 3c3p_A          128 DILFMDCDVFN-----------GADVLERMNRCLAKNALLIAV  159 (210)
T ss_dssp             EEEEEETTTSC-----------HHHHHHHHGGGEEEEEEEEEE
T ss_pred             CEEEEcCChhh-----------hHHHHHHHHHhcCCCeEEEEE
Confidence            99998753211           246999999999999999874

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.54  E-value=2.7e-14  Score=117.65  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=82.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  ...++|+|+++.+++.|++++...      +++|+.++.+|+.+.+   ...+++|.
T Consensus        78 ~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~---~~~~~~D~  146 (210)
T 3lbf_A           78 QSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLKNL------DLHNVSTRHGDGWQGW---QARAPFDA  146 (210)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCC---GGGCCEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHHHc------CCCceEEEECCcccCC---ccCCCccE
Confidence            558999999999999999999  679999999999999999887664      6779999999987422   33678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |+++..-++.              ...+.++|+|||++++....
T Consensus       147 i~~~~~~~~~--------------~~~~~~~L~pgG~lv~~~~~  176 (210)
T 3lbf_A          147 IIVTAAPPEI--------------PTALMTQLDEGGILVLPVGE  176 (210)
T ss_dssp             EEESSBCSSC--------------CTHHHHTEEEEEEEEEEECS
T ss_pred             EEEccchhhh--------------hHHHHHhcccCcEEEEEEcC
Confidence            9997655542              23688999999999998754

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.54  E-value=8.5e-15  Score=117.48  Aligned_cols=107  Identities=18%  Similarity=0.202  Sum_probs=82.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++. +...++|+|+++.+++.|++++...      ++ +++.++.+|+.+.++.  .++.+|
T Consensus        32 ~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~~~--~~~~fD  102 (177)
T 2esr_A           32 GGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNIIMT------KAENRFTLLKMEAERAIDC--LTGRFD  102 (177)
T ss_dssp             SCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHHTT------TCGGGEEEECSCHHHHHHH--BCSCEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHc------CCCCceEEEECcHHHhHHh--hcCCCC
Confidence            458999999999999999988 5679999999999999999877543      44 4899999998754432  245799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHH--HhhcCCcEEEEEeCch
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYA--YVLGVGGIIYTITDVE  190 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~--~~LkpgG~l~~~td~~  190 (252)
                      .|+++.|  +...       ....+++.+.  ++|+|||.+++.+...
T Consensus       103 ~i~~~~~--~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~~~  141 (177)
T 2esr_A          103 LVFLDPP--YAKE-------TIVATIEALAAKNLLSEQVMVVCETDKT  141 (177)
T ss_dssp             EEEECCS--SHHH-------HHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred             EEEECCC--CCcc-------hHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence            9998754  2110       1235777777  9999999999988653

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.54  E-value=3.2e-14  Score=121.09  Aligned_cols=104  Identities=14%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC----C
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF----E  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~----~  139 (252)
                      ...|||||||+|.+++.+|+..| +..++|+|+++.+++.|++++...      ++ +++.++.+|+.+.++...    .
T Consensus        80 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~------g~~~~i~~~~gda~~~l~~l~~~~~~  153 (247)
T 1sui_A           80 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA------GVDHKIDFREGPALPVLDEMIKDEKN  153 (247)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHHHHHHSGGG
T ss_pred             cCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCCeEEEECCHHHHHHHHHhccCC
Confidence            34899999999999999999987 789999999999999999887654      45 579999999976554221    2


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++++|.|++..+.+.           ...+++.+.++|+|||.|++.
T Consensus       154 ~~~fD~V~~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~d  189 (247)
T 1sui_A          154 HGSYDFIFVDADKDN-----------YLNYHKRLIDLVKVGGVIGYD  189 (247)
T ss_dssp             TTCBSEEEECSCSTT-----------HHHHHHHHHHHBCTTCCEEEE
T ss_pred             CCCEEEEEEcCchHH-----------HHHHHHHHHHhCCCCeEEEEe
Confidence            578999998653211           246999999999999999874

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.53  E-value=7.2e-14  Score=117.58  Aligned_cols=143  Identities=15%  Similarity=0.163  Sum_probs=98.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|++              ++.++.+|+.+.+. .++++++|.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~--------------~~~~~~~d~~~~~~-~~~~~~fD~  104 (240)
T 3dli_A           42 CRRVLDIGCGRGEFLELCKEE--GIESIGVDINEDMIKFCEG--------------KFNVVKSDAIEYLK-SLPDKYLDG  104 (240)
T ss_dssp             CSCEEEETCTTTHHHHHHHHH--TCCEEEECSCHHHHHHHHT--------------TSEEECSCHHHHHH-TSCTTCBSE
T ss_pred             CCeEEEEeCCCCHHHHHHHhC--CCcEEEEECCHHHHHHHHh--------------hcceeeccHHHHhh-hcCCCCeeE
Confidence            458999999999999999998  5679999999999877653              17889999875432 367899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS  225 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  225 (252)
                      |++...-.+....      ....+++++.++|||||.+++.+.+...........               ..|.......
T Consensus       105 i~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~  163 (240)
T 3dli_A          105 VMISHFVEHLDPE------RLFELLSLCYSKMKYSSYIVIESPNPTSLYSLINFY---------------IDPTHKKPVH  163 (240)
T ss_dssp             EEEESCGGGSCGG------GHHHHHHHHHHHBCTTCCEEEEEECTTSHHHHHHHT---------------TSTTCCSCCC
T ss_pred             EEECCchhhCCcH------HHHHHHHHHHHHcCCCcEEEEEeCCcchhHHHHHHh---------------cCccccccCC
Confidence            9987543332211      113699999999999999999886644322222111               0111111123


Q ss_pred             CCHHHHHHHHcCCCeEEEEEE
Q 025470          226 ATEEGQKVARNGGQTFQAVFR  246 (252)
Q Consensus       226 ~t~~e~~~~~~G~~i~~~~~~  246 (252)
                      .........+.|.++-.+.+-
T Consensus       164 ~~~l~~~l~~aGf~~~~~~~~  184 (240)
T 3dli_A          164 PETLKFILEYLGFRDVKIEFF  184 (240)
T ss_dssp             HHHHHHHHHHHTCEEEEEEEE
T ss_pred             HHHHHHHHHHCCCeEEEEEEe
Confidence            356677777888887666554

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.53  E-value=4.1e-14  Score=117.44  Aligned_cols=104  Identities=16%  Similarity=0.258  Sum_probs=83.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+  .++|+|+++.+++.|++++...      + .++.++.+|+.. ++  ++++++|.
T Consensus        39 ~~~vLDlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~------~-~~~~~~~~d~~~-~~--~~~~~~D~  106 (227)
T 1ve3_A           39 RGKVLDLACGVGGFSFLLEDYGF--EVVGVDISEDMIRKAREYAKSR------E-SNVEFIVGDARK-LS--FEDKTFDY  106 (227)
T ss_dssp             CCEEEEETCTTSHHHHHHHHTTC--EEEEEESCHHHHHHHHHHHHHT------T-CCCEEEECCTTS-CC--SCTTCEEE
T ss_pred             CCeEEEEeccCCHHHHHHHHcCC--EEEEEECCHHHHHHHHHHHHhc------C-CCceEEECchhc-CC--CCCCcEEE
Confidence            35899999999999999999976  8999999999999998876542      3 689999999863 43  56789999


Q ss_pred             EEEeCC--CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFP--DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fp--dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |+++.+  .-+..        ....+++++.++|+|||.+++.+.+
T Consensus       107 v~~~~~~~~~~~~--------~~~~~l~~~~~~L~~gG~l~~~~~~  144 (227)
T 1ve3_A          107 VIFIDSIVHFEPL--------ELNQVFKEVRRVLKPSGKFIMYFTD  144 (227)
T ss_dssp             EEEESCGGGCCHH--------HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcCchHhCCHH--------HHHHHHHHHHHHcCCCcEEEEEecC
Confidence            998865  22211        1136999999999999999987654

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.53  E-value=3.1e-14  Score=121.64  Aligned_cols=115  Identities=14%  Similarity=0.106  Sum_probs=93.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.+++..+  .++|+|+++.+++.|++++...      +.. +.++.+|+...    ++++++|.
T Consensus       121 ~~~VLDiGcG~G~l~~~la~~g~--~v~gvDi~~~~v~~a~~n~~~~------~~~-v~~~~~d~~~~----~~~~~fD~  187 (254)
T 2nxc_A          121 GDKVLDLGTGSGVLAIAAEKLGG--KALGVDIDPMVLPQAEANAKRN------GVR-PRFLEGSLEAA----LPFGPFDL  187 (254)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC--EEEEEESCGGGHHHHHHHHHHT------TCC-CEEEESCHHHH----GGGCCEEE
T ss_pred             CCEEEEecCCCcHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChhhc----CcCCCCCE
Confidence            45899999999999999999855  8999999999999999887653      555 89999998642    34678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |+.+.+..+           ...++..+.++|+|||.+++..........+.+.+.+.+
T Consensus       188 Vv~n~~~~~-----------~~~~l~~~~~~LkpgG~lils~~~~~~~~~v~~~l~~~G  235 (254)
T 2nxc_A          188 LVANLYAEL-----------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAG  235 (254)
T ss_dssp             EEEECCHHH-----------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred             EEECCcHHH-----------HHHHHHHHHHHcCCCCEEEEEeeccCCHHHHHHHHHHCC
Confidence            999865322           136999999999999999998766666777777777765

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.53  E-value=3.4e-14  Score=128.32  Aligned_cols=114  Identities=17%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhc--CCCCcccEEEEeCCcccccCc---cCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVS--NPGQYQNISVVRTNSMKYIPN---YFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~--~~~~~~nv~~~~~da~~~l~~---~~~  139 (252)
                      ...|||||||+|.++..+++.. |+..++|+|+|+.+++.|++++......  .....+|+.++.+|+......   .++
T Consensus        84 ~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~~~  163 (383)
T 4fsd_A           84 GATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEGVP  163 (383)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCCCC
T ss_pred             CCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCCCC
Confidence            5689999999999999999986 7889999999999999998876543100  001236899999998742111   467


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ++++|.|+.+..-.+...        ...+++++.++|||||.|++.+
T Consensus       164 ~~~fD~V~~~~~l~~~~d--------~~~~l~~~~r~LkpgG~l~i~~  203 (383)
T 4fsd_A          164 DSSVDIVISNCVCNLSTN--------KLALFKEIHRVLRDGGELYFSD  203 (383)
T ss_dssp             TTCEEEEEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CCCEEEEEEccchhcCCC--------HHHHHHHHHHHcCCCCEEEEEE
Confidence            889999999875444321        1369999999999999999975

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.53  E-value=2.7e-14  Score=121.15  Aligned_cols=104  Identities=13%  Similarity=0.214  Sum_probs=82.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.+ +..++|+|+|+.+++.|++++.        ..+++.++.+|+.. ++  ++++++|.
T Consensus        56 ~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~~-~~--~~~~~fD~  123 (266)
T 3ujc_A           56 NSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVS--------GNNKIIFEANDILT-KE--FPENNFDL  123 (266)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCC--------SCTTEEEEECCTTT-CC--CCTTCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhh--------cCCCeEEEECcccc-CC--CCCCcEEE
Confidence            4589999999999999999987 6799999999999988876431        12789999999874 43  66889999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.+....      ....+++++.++|||||.+++.+
T Consensus       124 v~~~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          124 IYSRDAILALSLE------NKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EeHHHHHHhcChH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence            9987654332100      12369999999999999999976

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=99.52  E-value=3e-14  Score=123.75  Aligned_cols=129  Identities=13%  Similarity=0.096  Sum_probs=97.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|..+..+++..|...+++||+++.+++.|++++....  .....+++.++.+|+.+.+..  .++++|.
T Consensus        79 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~--~~~~~~~v~~~~~D~~~~l~~--~~~~fD~  154 (283)
T 2i7c_A           79 PKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNIS--CGYEDKRVNVFIEDASKFLEN--VTNTYDV  154 (283)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTS--GGGGSTTEEEEESCHHHHHHH--CCSCEEE
T ss_pred             CCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhc--cccCCCcEEEEECChHHHHHh--CCCCceE
Confidence            348999999999999999988778899999999999999987653210  000146899999999765542  2678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLEN  202 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~  202 (252)
                      |+++.++|+..    ...+.+..+++.+.++|+|||.+++.+.+    .+....+.+.+.+
T Consensus       155 Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~  211 (283)
T 2i7c_A          155 IIVDSSDPIGP----AETLFNQNFYEKIYNALKPNGYCVAQCESLWIHVGTIKNMIGYAKK  211 (283)
T ss_dssp             EEEECCCTTTG----GGGGSSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHT
T ss_pred             EEEcCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEECCCcccCHHHHHHHHHHHHH
Confidence            99998888732    23445678999999999999999998653    2344555555544

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=99.52  E-value=5.6e-14  Score=121.85  Aligned_cols=125  Identities=16%  Similarity=0.097  Sum_probs=93.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCC-------CcccEEEEeCCcccccCccC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPG-------QYQNISVVRTNSMKYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~-------~~~nv~~~~~da~~~l~~~~  138 (252)
                      ...|||||||+|.++..+++. +...++|||+++.+++.|++++ ...  ...       ..+++.++.+|+.+.+..  
T Consensus        76 ~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~--~~l~~~~~~~~~~~v~~~~~D~~~~l~~--  149 (281)
T 1mjf_A           76 PKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KID--NGLLEAMLNGKHEKAKLTIGDGFEFIKN--  149 (281)
T ss_dssp             CCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTT--TTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred             CCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhc--cccccccccCCCCcEEEEECchHHHhcc--
Confidence            348999999999999999998 8889999999999999998765 210  000       236899999998765542  


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHh
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLE  201 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~  201 (252)
                       ++++|.|+++.++|+..    ...+....+++.+.++|+|||.+++.+..    .+....+.+.+.
T Consensus       150 -~~~fD~Ii~d~~~~~~~----~~~l~~~~~l~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~  211 (281)
T 1mjf_A          150 -NRGFDVIIADSTDPVGP----AKVLFSEEFYRYVYDALNNPGIYVTQAGSVYLFTDELISAYKEMK  211 (281)
T ss_dssp             -CCCEEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEETTTSHHHHHHHHHHHH
T ss_pred             -cCCeeEEEECCCCCCCc----chhhhHHHHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHH
Confidence             57899999999988632    22334578999999999999999997643    334444444443

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.52  E-value=3e-14  Score=120.66  Aligned_cols=100  Identities=15%  Similarity=0.201  Sum_probs=83.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++...|...++|+|+|+.+++.|+++           .+|+.++.+|+.. ++   +++++|.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----------~~~~~~~~~d~~~-~~---~~~~fD~   98 (259)
T 2p35_A           34 VLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----------LPNTNFGKADLAT-WK---PAQKADL   98 (259)
T ss_dssp             CSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----------STTSEEEECCTTT-CC---CSSCEEE
T ss_pred             CCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----------CCCcEEEECChhh-cC---ccCCcCE
Confidence            4589999999999999999999888999999999999887653           3579999999864 43   4789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++..-.|...        ...+++++.++|+|||.+++.+.
T Consensus        99 v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~~  133 (259)
T 2p35_A           99 LYANAVFQWVPD--------HLAVLSQLMDQLESGGVLAVQMP  133 (259)
T ss_dssp             EEEESCGGGSTT--------HHHHHHHHGGGEEEEEEEEEEEE
T ss_pred             EEEeCchhhCCC--------HHHHHHHHHHhcCCCeEEEEEeC
Confidence            999876555421        13699999999999999999874

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.52  E-value=4.4e-15  Score=126.10  Aligned_cols=104  Identities=11%  Similarity=0.105  Sum_probs=84.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCC---C
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFE---K  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~---~  140 (252)
                      ...|||||||+|..++.+|+..| +..++|||+++.+++.|++++...      ++ ++|.++.+|+.+.++....   +
T Consensus        61 ~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------g~~~~i~~~~gda~~~l~~~~~~~~~  134 (242)
T 3r3h_A           61 AKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA------KQEHKIKLRLGPALDTLHSLLNEGGE  134 (242)
T ss_dssp             CSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT------TCTTTEEEEESCHHHHHHHHHHHHCS
T ss_pred             cCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHHHhhccCC
Confidence            34899999999999999999876 789999999999999999888664      55 4899999999765542211   4


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +++|.|++..+.+.           ...+++.+.++|+|||.|++.
T Consensus       135 ~~fD~V~~d~~~~~-----------~~~~l~~~~~~LkpGG~lv~d  169 (242)
T 3r3h_A          135 HQFDFIFIDADKTN-----------YLNYYELALKLVTPKGLIAID  169 (242)
T ss_dssp             SCEEEEEEESCGGG-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEeEEEEcCChHH-----------hHHHHHHHHHhcCCCeEEEEE
Confidence            78999998754111           235899999999999999983

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.52  E-value=3.4e-14  Score=114.41  Aligned_cols=108  Identities=20%  Similarity=0.145  Sum_probs=82.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCcc-CCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNY-FEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~-~~~~s~  143 (252)
                      ...|||+|||+|.++..+++. +...++|+|+++.+++.|++++...      ++ +|+.++++|+.+.+... +.++++
T Consensus        45 ~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~~~~~~~~~~~~f  117 (187)
T 2fhp_A           45 GGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIAIT------KEPEKFEVRKMDANRALEQFYEEKLQF  117 (187)
T ss_dssp             SCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHH------TCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHHHh------CCCcceEEEECcHHHHHHHHHhcCCCC
Confidence            458999999999999998884 5578999999999999999888665      44 58999999987533211 125789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHH--HHhhcCCcEEEEEeCc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEY--AYVLGVGGIIYTITDV  189 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~--~~~LkpgG~l~~~td~  189 (252)
                      |.|+++.|  +...       ....+++.+  .++|+|||.+++.+..
T Consensus       118 D~i~~~~~--~~~~-------~~~~~~~~l~~~~~L~~gG~l~~~~~~  156 (187)
T 2fhp_A          118 DLVLLDPP--YAKQ-------EIVSQLEKMLERQLLTNEAVIVCETDK  156 (187)
T ss_dssp             EEEEECCC--GGGC-------CHHHHHHHHHHTTCEEEEEEEEEEEET
T ss_pred             CEEEECCC--CCch-------hHHHHHHHHHHhcccCCCCEEEEEeCC
Confidence            99998765  2111       123567777  8889999999998754

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.52  E-value=3.4e-14  Score=120.49  Aligned_cols=102  Identities=21%  Similarity=0.324  Sum_probs=83.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|++++ .      ...+|+.++.+|+.. ++  ++++++|.
T Consensus        40 ~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-~------~~~~~~~~~~~d~~~-~~--~~~~~fD~  107 (263)
T 2yqz_A           40 EPVFLELGVGTGRIALPLIAR--GYRYIALDADAAMLEVFRQKI-A------GVDRKVQVVQADARA-IP--LPDESVHG  107 (263)
T ss_dssp             CCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHHHHHHHHT-T------TSCTTEEEEESCTTS-CC--SCTTCEEE
T ss_pred             CCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHh-h------ccCCceEEEEccccc-CC--CCCCCeeE
Confidence            458999999999999999998  578999999999999888764 1      246789999999863 44  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.|...        ...+++++.++|+|||.+++..
T Consensus       108 v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~  141 (263)
T 2yqz_A          108 VIVVHLWHLVPD--------WPKVLAEAIRVLKPGGALLEGW  141 (263)
T ss_dssp             EEEESCGGGCTT--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCchhhcCC--------HHHHHHHHHHHCCCCcEEEEEe
Confidence            999876555421        1369999999999999999873

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.52  E-value=9e-14  Score=113.65  Aligned_cols=102  Identities=13%  Similarity=0.056  Sum_probs=82.1

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .|||||||+|.++..+++.  +..++|+|+++.+++.|++++...      +. ++.++.+|+.. ++  ++++++|.|+
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~-~~--~~~~~fD~v~   99 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQEK------GV-KITTVQSNLAD-FD--IVADAWEGIV   99 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHHHH------TC-CEEEECCBTTT-BS--CCTTTCSEEE
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhc------CC-ceEEEEcChhh-cC--CCcCCccEEE
Confidence            8999999999999999987  569999999999999998877653      33 89999999864 43  5678999999


Q ss_pred             EeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      +.+.. +..       -....+++++.++|+|||.+++.+..
T Consensus       100 ~~~~~-~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~  133 (202)
T 2kw5_A          100 SIFCH-LPS-------SLRQQLYPKVYQGLKPGGVFILEGFA  133 (202)
T ss_dssp             EECCC-CCH-------HHHHHHHHHHHTTCCSSEEEEEEEEC
T ss_pred             EEhhc-CCH-------HHHHHHHHHHHHhcCCCcEEEEEEec
Confidence            87532 110       01236999999999999999998754

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.52  E-value=4.6e-14  Score=115.51  Aligned_cols=101  Identities=14%  Similarity=0.153  Sum_probs=80.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++..  +..++|+|+++.+++.|+++           .+++.++.+|+.. ++  ++++++|.
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~~~d~~~-~~--~~~~~fD~  105 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-----------HPSVTFHHGTITD-LS--DSPKRWAG  105 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-----------CTTSEEECCCGGG-GG--GSCCCEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-----------CCCCeEEeCcccc-cc--cCCCCeEE
Confidence            347999999999999999998  56899999999999887753           3479999999874 44  56789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++..-.+....      ....+++++.++|+|||.+++.+.
T Consensus       106 v~~~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~i~~~  142 (203)
T 3h2b_A          106 LLAWYSLIHMGPG------ELPDALVALRMAVEDGGGLLMSFF  142 (203)
T ss_dssp             EEEESSSTTCCTT------THHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEehhhHhcCCHH------HHHHHHHHHHHHcCCCcEEEEEEc
Confidence            9987654332110      123699999999999999999763

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.52  E-value=1.6e-13  Score=119.21  Aligned_cols=124  Identities=11%  Similarity=0.148  Sum_probs=90.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc-
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL-  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~-  143 (252)
                      ...|||||||+|.+++.+|.. |+.+++|+|+|+.+++.|++++...      ++.| +.|+++|+.+.++     +++ 
T Consensus       124 ~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~~~------~l~~~v~~~~~D~~~~~~-----~~f~  191 (284)
T 1nv8_A          124 IKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAERH------GVSDRFFVRKGEFLEPFK-----EKFA  191 (284)
T ss_dssp             CCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHHHT------TCTTSEEEEESSTTGGGG-----GGTT
T ss_pred             CCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHc------CCCCceEEEECcchhhcc-----cccC
Confidence            358999999999999999999 9999999999999999999988664      6665 9999999875332     467 


Q ss_pred             --cEEEEeCCCCcccc------cccccccc-----CHHHHHHHH-HhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          144 --TKMFFLFPDPHFKE------KNHRRRVI-----SPHLLDEYA-YVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       144 --d~i~~~fpdP~~k~------~h~krr~~-----~~~~l~~~~-~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                        |.|+.|.|--....      +|..+..+     ...+++.+. +.|+|||.+++.... ...+.+.+.+.+
T Consensus       192 ~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~~~-~q~~~v~~~~~~  263 (284)
T 1nv8_A          192 SIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIVSD  263 (284)
T ss_dssp             TCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTSTT
T ss_pred             CCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEECc-hHHHHHHHHHHh
Confidence              99999854211110      01111000     126899999 999999999997765 344444444443

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.52  E-value=1.2e-13  Score=115.57  Aligned_cols=91  Identities=9%  Similarity=0.130  Sum_probs=76.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~d  144 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|+++           .+|+.++++|+.+.++  ++ ++++|
T Consensus        49 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~d~~~~~~--~~~~~~fD  113 (226)
T 3m33_A           49 QTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-----------APHADVYEWNGKGELP--AGLGAPFG  113 (226)
T ss_dssp             TCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-----------CTTSEEEECCSCSSCC--TTCCCCEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-----------CCCceEEEcchhhccC--CcCCCCEE
Confidence            458999999999999999999  67999999999999888754           3479999999854454  55 78999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .|+.+ +++.             .+++++.++|||||.++.
T Consensus       114 ~v~~~-~~~~-------------~~l~~~~~~LkpgG~l~~  140 (226)
T 3m33_A          114 LIVSR-RGPT-------------SVILRLPELAAPDAHFLY  140 (226)
T ss_dssp             EEEEE-SCCS-------------GGGGGHHHHEEEEEEEEE
T ss_pred             EEEeC-CCHH-------------HHHHHHHHHcCCCcEEEE
Confidence            99987 3332             489999999999999983

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.52  E-value=5.1e-14  Score=121.57  Aligned_cols=116  Identities=17%  Similarity=0.165  Sum_probs=88.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC--CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF--EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~--~~~s  142 (252)
                      ...|||+|||+|..+..+|+..++ ..++|+|+++.+++.+++++...      +++|+.++++|+.. +...+  ..+.
T Consensus        84 g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~------g~~~v~~~~~D~~~-~~~~~~~~~~~  156 (274)
T 3ajd_A           84 DDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM------GVLNTIIINADMRK-YKDYLLKNEIF  156 (274)
T ss_dssp             TCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCHHH-HHHHHHHTTCC
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh------CCCcEEEEeCChHh-cchhhhhcccc
Confidence            568999999999999999998766 79999999999999999887654      67799999999874 32111  2568


Q ss_pred             ccEEEEeCCCCcc----------ccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          143 LTKMFFLFPDPHF----------KEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       143 ~d~i~~~fpdP~~----------k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +|.|+++.|....          ........-.+..+++.+.++|||||.+++.|-
T Consensus       157 fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stc  212 (274)
T 3ajd_A          157 FDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTC  212 (274)
T ss_dssp             EEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEES
T ss_pred             CCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEEC
Confidence            9999998653211          000011112346799999999999999999773

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.52  E-value=6.1e-15  Score=125.33  Aligned_cols=115  Identities=17%  Similarity=0.149  Sum_probs=78.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCC---CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFE---KG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~---~~  141 (252)
                      ...|||||||+|.++..+|...|+..++|+|+++.|++.|++++...      ++.+ +.++++|+.+.+...++   ++
T Consensus        66 ~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~~~~~~~~~~~~  139 (254)
T 2h00_A           66 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN------NLSDLIKVVKVPQKTLLMDALKEESEI  139 (254)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             CCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc------CCCccEEEEEcchhhhhhhhhhcccCC
Confidence            45899999999999999999988889999999999999999887653      5554 99999998642222344   26


Q ss_pred             cccEEEEeCCCCccc-c------ccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFK-E------KNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k-~------~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++|.|+++.|--+.. .      +..++......++..+.++|||||.+.+.
T Consensus       140 ~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~  191 (254)
T 2h00_A          140 IYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFV  191 (254)
T ss_dssp             CBSEEEECCCCC-------------------------CTTTTHHHHTHHHHH
T ss_pred             cccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEE
Confidence            899999986532211 0      00111112235778899999999988764

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.51  E-value=4.1e-14  Score=116.91  Aligned_cols=106  Identities=12%  Similarity=0.133  Sum_probs=82.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..  ..++|+|+++.+++.|++++.        ..+|+.++++|+.. ++   +++++|.
T Consensus        52 ~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~~-~~---~~~~fD~  117 (216)
T 3ofk_A           52 VSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTK--------RWSHISWAATDILQ-FS---TAELFDL  117 (216)
T ss_dssp             EEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTT--------TCSSEEEEECCTTT-CC---CSCCEEE
T ss_pred             CCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcc--------cCCCeEEEEcchhh-CC---CCCCccE
Confidence            4589999999999999999984  589999999999999887642        23489999999874 33   4789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |+++..-.+.....     ....+++++.++|||||.+++.+...
T Consensus       118 v~~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~  157 (216)
T 3ofk_A          118 IVVAEVLYYLEDMT-----QMRTAIDNMVKMLAPGGHLVFGSARD  157 (216)
T ss_dssp             EEEESCGGGSSSHH-----HHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred             EEEccHHHhCCCHH-----HHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            99975443322110     01258999999999999999987544

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.51  E-value=1.2e-13  Score=115.26  Aligned_cols=104  Identities=16%  Similarity=0.108  Sum_probs=81.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..+|+.. |...++|+|+++.+++.+.+++.        ..+|+.++.+|+.........++++|
T Consensus        74 ~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~--------~~~~v~~~~~d~~~~~~~~~~~~~~D  145 (227)
T 1g8a_A           74 GKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE--------ERRNIVPILGDATKPEEYRALVPKVD  145 (227)
T ss_dssp             TCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS--------SCTTEEEEECCTTCGGGGTTTCCCEE
T ss_pred             CCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHh--------ccCCCEEEEccCCCcchhhcccCCce
Confidence            4589999999999999999884 66899999999999988876542        22789999999864211011245899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++.+.|+..          ..++.++.++|||||.+++..
T Consensus       146 ~v~~~~~~~~~~----------~~~l~~~~~~LkpgG~l~~~~  178 (227)
T 1g8a_A          146 VIFEDVAQPTQA----------KILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEECCCSTTHH----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEECCCCHhHH----------HHHHHHHHHhcCCCCEEEEEE
Confidence            999988765521          136999999999999999874

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.51  E-value=5.1e-14  Score=121.78  Aligned_cols=105  Identities=18%  Similarity=0.292  Sum_probs=84.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|. ..++|+|+|+.+++.|++++...      + .|+.++.+|+.+ ++  + ++++|
T Consensus        23 ~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------~-~~v~~~~~d~~~-~~--~-~~~fD   91 (284)
T 3gu3_A           23 PVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL------P-YDSEFLEGDATE-IE--L-NDKYD   91 (284)
T ss_dssp             CCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSS------S-SEEEEEESCTTT-CC--C-SSCEE
T ss_pred             CCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhc------C-CceEEEEcchhh-cC--c-CCCee
Confidence            458999999999999999999984 89999999999999998876432      2 389999999874 43  3 56999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|++...-.+...        ...+++++.++|||||.+++...+
T Consensus        92 ~v~~~~~l~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~  128 (284)
T 3gu3_A           92 IAICHAFLLHMTT--------PETMLQKMIHSVKKGGKIICFEPH  128 (284)
T ss_dssp             EEEEESCGGGCSS--------HHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECChhhcCCC--------HHHHHHHHHHHcCCCCEEEEEecc
Confidence            9998764332211        136999999999999999987655

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.51  E-value=4.2e-14  Score=119.09  Aligned_cols=107  Identities=12%  Similarity=0.055  Sum_probs=83.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.. ...++|+|+++.+++.|++++...      +..++.++.+|+.. ++  ++++++|.
T Consensus        80 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~d~~~-~~--~~~~~fD~  149 (241)
T 2ex4_A           80 TSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGEE------GKRVRNYFCCGLQD-FT--PEPDSYDV  149 (241)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGGG------GGGEEEEEECCGGG-CC--CCSSCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhhc------CCceEEEEEcChhh-cC--CCCCCEEE
Confidence            4589999999999999999887 568999999999999988765332      35679999999863 43  45678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++...-.+....      ....+++++.++|+|||.+++.+.
T Consensus       150 v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~  186 (241)
T 2ex4_A          150 IWIQWVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVIKDN  186 (241)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEEc
Confidence            9988643332110      013699999999999999999764

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.51  E-value=6.4e-14  Score=115.75  Aligned_cols=102  Identities=15%  Similarity=0.209  Sum_probs=84.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. |...++|+|+++.+++.|++++...      +.+|+.++.+|+...+   ..++++|
T Consensus        78 ~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~~~---~~~~~fD  148 (215)
T 2yxe_A           78 GMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL------GYDNVIVIVGDGTLGY---EPLAPYD  148 (215)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------TCTTEEEEESCGGGCC---GGGCCEE
T ss_pred             CCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCCeEEEECCcccCC---CCCCCee
Confidence            4589999999999999999986 6689999999999999999887664      6778999999985322   2257899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      .|+++.+.++              +.+.+.++|+|||.+++.+...
T Consensus       149 ~v~~~~~~~~--------------~~~~~~~~L~pgG~lv~~~~~~  180 (215)
T 2yxe_A          149 RIYTTAAGPK--------------IPEPLIRQLKDGGKLLMPVGRY  180 (215)
T ss_dssp             EEEESSBBSS--------------CCHHHHHTEEEEEEEEEEESSS
T ss_pred             EEEECCchHH--------------HHHHHHHHcCCCcEEEEEECCC
Confidence            9998876554              2358899999999999988654

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.51  E-value=8.4e-14  Score=122.17  Aligned_cols=114  Identities=11%  Similarity=0.151  Sum_probs=85.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+...+++||+++.+++.|++++.....  ....+++.++.+|+.+.++.  .++++|.
T Consensus        96 ~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~--~~~~~rv~v~~~Da~~~l~~--~~~~fD~  171 (304)
T 2o07_A           96 PRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMKQ--NQDAFDV  171 (304)
T ss_dssp             CCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHT--CSSCEEE
T ss_pred             CCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhc--ccCCCcEEEEECcHHHHHhh--CCCCceE
Confidence            3489999999999999999987788999999999999999987654210  00236899999999765542  3678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++.++|+...    ..+....+++.+.++|+|||.+++.+
T Consensus       172 Ii~d~~~~~~~~----~~l~~~~~l~~~~~~LkpgG~lv~~~  209 (304)
T 2o07_A          172 IITDSSDPMGPA----ESLFKESYYQLMKTALKEDGVLCCQG  209 (304)
T ss_dssp             EEEECC---------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEECCCCCCCcc----hhhhHHHHHHHHHhccCCCeEEEEec
Confidence            999998876321    12334579999999999999999976

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.51  E-value=6.7e-14  Score=117.99  Aligned_cols=105  Identities=12%  Similarity=0.181  Sum_probs=84.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCcc------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNY------  137 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~------  137 (252)
                      ...|||||||+|.++..+|+..| ...++|+|+++.+++.|++++...      +..+ +.++.+|+.+.++..      
T Consensus        61 ~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g~~~~v~~~~~d~~~~~~~~~~~~~~  134 (239)
T 2hnk_A           61 AKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN------GLENKIFLKLGSALETLQVLIDSKSA  134 (239)
T ss_dssp             CSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHHHHHHCSSC
T ss_pred             cCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCCEEEEECCHHHHHHHHHhhccc
Confidence            45899999999999999999987 689999999999999999887653      5554 999999987543321      


Q ss_pred             ------CCC--CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          138 ------FEK--GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       138 ------~~~--~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                            |++  +++|.|++....+.           ...+++.+.++|+|||.+++..
T Consensus       135 ~~~~~~f~~~~~~fD~I~~~~~~~~-----------~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          135 PSWASDFAFGPSSIDLFFLDADKEN-----------YPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             CGGGTTTCCSTTCEEEEEECSCGGG-----------HHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ccccccccCCCCCcCEEEEeCCHHH-----------HHHHHHHHHHHcCCCeEEEEEc
Confidence                  333  78999998754221           1368999999999999999864

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.50  E-value=2e-13  Score=117.49  Aligned_cols=146  Identities=16%  Similarity=0.172  Sum_probs=99.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++  ++..++|+|+|+.|++.|+++           .+|+.++.+|+.. ++  + ++++|.
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~-----------~~~~~~~~~d~~~-~~--~-~~~fD~  120 (279)
T 3ccf_A           58 GEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQN-----------YPHLHFDVADARN-FR--V-DKPLDA  120 (279)
T ss_dssp             TCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHH-----------CTTSCEEECCTTT-CC--C-SSCEEE
T ss_pred             CCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhh-----------CCCCEEEECChhh-CC--c-CCCcCE
Confidence            45899999999999999999  678999999999999887653           2578999999864 54  3 579999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhcCCCcccccccccccCcccc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLENHPMFEALTKEELEADPVVK  221 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~  221 (252)
                      |+++..-.|...        ...+++++.++|||||.+++.+...    .....+...+...+..  ...  . ..+.  
T Consensus       121 v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~-~~~~--  185 (279)
T 3ccf_A          121 VFSNAMLHWVKE--------PEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALYNALETLGIH--NPQ--A-LNPW--  185 (279)
T ss_dssp             EEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHHHHHHHHTCC--CGG--G-GCCC--
T ss_pred             EEEcchhhhCcC--------HHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCc--ccc--C-cCce--
Confidence            998765444321        1369999999999999999976543    2222233333222210  000  0 1111  


Q ss_pred             CCCCCCHHHHHHHHcCCCeEEE
Q 025470          222 LLSSATEEGQKVARNGGQTFQA  243 (252)
Q Consensus       222 ~~~~~t~~e~~~~~~G~~i~~~  243 (252)
                      ......++.....+.|.++-.+
T Consensus       186 ~~~~~~~~~~~l~~aGf~~~~~  207 (279)
T 3ccf_A          186 YFPSIGEYVNILEKQGFDVTYA  207 (279)
T ss_dssp             CCCCHHHHHHHHHHHTEEEEEE
T ss_pred             eCCCHHHHHHHHHHcCCEEEEE
Confidence            1133456777778888876444

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.50  E-value=2.1e-14  Score=125.45  Aligned_cols=107  Identities=15%  Similarity=0.183  Sum_probs=83.0

Q ss_pred             CceEEEEcCcccHHHHHHH-HHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLS-TLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA-~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|.++..+| ...|+..++|+|+++.+++.|++++..      .+.. ++.++++|+.+ ++  ++ +++
T Consensus       119 ~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~~--~~-~~f  188 (305)
T 3ocj_A          119 GCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAG------HALAGQITLHRQDAWK-LD--TR-EGY  188 (305)
T ss_dssp             TCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTT------STTGGGEEEEECCGGG-CC--CC-SCE
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHh------cCCCCceEEEECchhc-CC--cc-CCe
Confidence            4589999999999999997 567899999999999999999887643      2444 59999999874 43  44 899


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+++.+-.+.....     ....+++++.++|||||.+++.+
T Consensus       189 D~v~~~~~~~~~~~~~-----~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          189 DLLTSNGLNIYEPDDA-----RVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             EEEECCSSGGGCCCHH-----HHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             EEEEECChhhhcCCHH-----HHHHHHHHHHHhcCCCeEEEEEe
Confidence            9999865332211100     11248999999999999999966

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.50  E-value=3e-14  Score=118.58  Aligned_cols=112  Identities=14%  Similarity=0.211  Sum_probs=82.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++..  +..++|+|+++.+++.|++++.... .......++.++.+|+.. ++  ++++++|.
T Consensus        31 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~~~~~~~d~~~-~~--~~~~~~D~  104 (235)
T 3sm3_A           31 DDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAARSPG-LNQKTGGKAEFKVENASS-LS--FHDSSFDF  104 (235)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTTCCS-CCSSSSCEEEEEECCTTS-CC--SCTTCEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHHhcC-CccccCcceEEEEecccc-cC--CCCCceeE
Confidence            458999999999999999998  6699999999999999887653210 000012378999999863 43  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++..-.+.....     ....+++++.++|+|||.+++.+-
T Consensus       105 v~~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~  142 (235)
T 3sm3_A          105 AVMQAFLTSVPDPK-----ERSRIIKEVFRVLKPGAYLYLVEF  142 (235)
T ss_dssp             EEEESCGGGCCCHH-----HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhcCCCHH-----HHHHHHHHHHHHcCCCeEEEEEEC
Confidence            99875433221100     012599999999999999999764

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.50  E-value=8.5e-14  Score=122.65  Aligned_cols=113  Identities=19%  Similarity=0.238  Sum_probs=86.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|..+..+|+..+ ...++|+|+++.+++.+++++...      ++.|+.++++|+.. ++.  .++++|
T Consensus       119 g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~------g~~~v~~~~~D~~~-~~~--~~~~fD  189 (315)
T 1ixk_A          119 GEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLH-IGE--LNVEFD  189 (315)
T ss_dssp             TCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGG-GGG--GCCCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh------CCCeEEEEECChhh-ccc--ccccCC
Confidence            56899999999999999999864 578999999999999999988765      77799999999874 432  356899


Q ss_pred             EEEEeCCCC----ccccccccc----------cccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDP----HFKEKNHRR----------RVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP----~~k~~h~kr----------r~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++.|..    +.+....+.          .-.+..+++.+.++|||||++++.|
T Consensus       190 ~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~st  246 (315)
T 1ixk_A          190 KILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYST  246 (315)
T ss_dssp             EEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence            999986621    100000000          1123579999999999999999976

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.50  E-value=5.4e-14  Score=117.32  Aligned_cols=104  Identities=13%  Similarity=0.164  Sum_probs=83.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCC---
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEK---  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~---  140 (252)
                      ...|||||||+|.++..+|+..| +..++|+|+++.+++.|++++...      ++ .++.++.+|+.+.++.....   
T Consensus        70 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------g~~~~i~~~~~d~~~~~~~~~~~~~~  143 (229)
T 2avd_A           70 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA------EAEHKIDLRLKPALETLDELLAAGEA  143 (229)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT------TCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             CCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC------CCCCeEEEEEcCHHHHHHHHHhcCCC
Confidence            45899999999999999999877 789999999999999999887653      44 58999999987544322111   


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +++|.|++..+...           ...+++.+.++|+|||.+++.
T Consensus       144 ~~~D~v~~d~~~~~-----------~~~~l~~~~~~L~pgG~lv~~  178 (229)
T 2avd_A          144 GTFDVAVVDADKEN-----------CSAYYERCLQLLRPGGILAVL  178 (229)
T ss_dssp             TCEEEEEECSCSTT-----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCccEEEECCCHHH-----------HHHHHHHHHHHcCCCeEEEEE
Confidence            68999998654221           236999999999999999884

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.50  E-value=1.3e-13  Score=118.89  Aligned_cols=104  Identities=15%  Similarity=0.171  Sum_probs=83.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|++++...      ++ ++.++.+|+.. ++  + ++++|.
T Consensus       121 ~~~vLD~GcG~G~~~~~l~~~--g~~v~~vD~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~-~~--~-~~~fD~  187 (286)
T 3m70_A          121 PCKVLDLGCGQGRNSLYLSLL--GYDVTSWDHNENSIAFLNETKEKE------NL-NISTALYDINA-AN--I-QENYDF  187 (286)
T ss_dssp             SCEEEEESCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TC-CEEEEECCGGG-CC--C-CSCEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHc------CC-ceEEEEecccc-cc--c-cCCccE
Confidence            558999999999999999998  568999999999999999887653      55 89999999874 33  2 789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++.+-.+...      -....+++++.++|+|||.+++.++
T Consensus       188 i~~~~~~~~~~~------~~~~~~l~~~~~~LkpgG~l~i~~~  224 (286)
T 3m70_A          188 IVSTVVFMFLNR------ERVPSIIKNMKEHTNVGGYNLIVAA  224 (286)
T ss_dssp             EEECSSGGGSCG------GGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEEccchhhCCH------HHHHHHHHHHHHhcCCCcEEEEEEe
Confidence            998764433211      1123699999999999999888764

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.49  E-value=9.9e-14  Score=113.89  Aligned_cols=112  Identities=15%  Similarity=0.135  Sum_probs=85.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+. .++|+|+++.+++.|++++.        ..+++.++.+|+.. ++  ++++++|.
T Consensus        43 ~~~vLdiGcG~G~~~~~l~~~~~~-~v~~~D~s~~~~~~a~~~~~--------~~~~i~~~~~d~~~-~~--~~~~~fD~  110 (215)
T 2pxx_A           43 EDRILVLGCGNSALSYELFLGGFP-NVTSVDYSSVVVAAMQACYA--------HVPQLRWETMDVRK-LD--FPSASFDV  110 (215)
T ss_dssp             TCCEEEETCTTCSHHHHHHHTTCC-CEEEEESCHHHHHHHHHHTT--------TCTTCEEEECCTTS-CC--SCSSCEEE
T ss_pred             CCeEEEECCCCcHHHHHHHHcCCC-cEEEEeCCHHHHHHHHHhcc--------cCCCcEEEEcchhc-CC--CCCCcccE
Confidence            458999999999999999998654 89999999999998876542        24689999999864 43  66789999


Q ss_pred             EEEeC---------CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          146 MFFLF---------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       146 i~~~f---------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      |+.+.         ++||....++..  ....+++++.++|+|||.+++.+....
T Consensus       111 v~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~~LkpgG~li~~~~~~~  163 (215)
T 2pxx_A          111 VLEKGTLDALLAGERDPWTVSSEGVH--TVDQVLSEVSRVLVPGGRFISMTSAAP  163 (215)
T ss_dssp             EEEESHHHHHTTTCSCTTSCCHHHHH--HHHHHHHHHHHHEEEEEEEEEEESCCH
T ss_pred             EEECcchhhhccccccccccccchhH--HHHHHHHHHHHhCcCCCEEEEEeCCCc
Confidence            99753         345543211111  124699999999999999999887653

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.49  E-value=5.5e-14  Score=121.56  Aligned_cols=123  Identities=14%  Similarity=0.142  Sum_probs=86.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++..  +..++|+|+|+.|++.|++++....  ......++.+..+|+.......++++++|.
T Consensus        58 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~  133 (293)
T 3thr_A           58 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRR--KEPAFDKWVIEEANWLTLDKDVPAGDGFDA  133 (293)
T ss_dssp             CCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTT--TSHHHHTCEEEECCGGGHHHHSCCTTCEEE
T ss_pred             CCEEEEecCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHhhhhcc--cccccceeeEeecChhhCccccccCCCeEE
Confidence            458999999999999999998  4589999999999999987764321  112346799999998642222256789999


Q ss_pred             EEEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025470          146 MFFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG  193 (252)
Q Consensus       146 i~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~  193 (252)
                      |++. ..-.+..... ...-....+++++.++|||||.+++.+.+.+..
T Consensus       134 V~~~g~~l~~~~~~~-~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~  181 (293)
T 3thr_A          134 VICLGNSFAHLPDSK-GDQSEHRLALKNIASMVRPGGLLVIDHRNYDYI  181 (293)
T ss_dssp             EEECTTCGGGSCCSS-SSSHHHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             EEEcChHHhhcCccc-cCHHHHHHHHHHHHHHcCCCeEEEEEeCCHHHH
Confidence            9986 3221111100 000012369999999999999999998775543

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.49  E-value=1e-13  Score=114.12  Aligned_cols=103  Identities=12%  Similarity=0.138  Sum_probs=82.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++..  +..++|+|+++.+++.|++          .+.+|+.++++|+.. +   ++++++|.
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~----------~~~~~~~~~~~d~~~-~---~~~~~~D~  110 (218)
T 3ou2_A           47 RGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGR----------HGLDNVEFRQQDLFD-W---TPDRQWDA  110 (218)
T ss_dssp             CSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGG----------GCCTTEEEEECCTTS-C---CCSSCEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHh----------cCCCCeEEEeccccc-C---CCCCceeE
Confidence            458999999999999999999  6799999999999987764          256789999999864 2   56889999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |+++..-.+....      ....+++++.++|+|||.+++.+.+.
T Consensus       111 v~~~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~~~~  149 (218)
T 3ou2_A          111 VFFAHWLAHVPDD------RFEAFWESVRSAVAPGGVVEFVDVTD  149 (218)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred             EEEechhhcCCHH------HHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence            9987643332110      01369999999999999999987654

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.49  E-value=8.7e-14  Score=117.56  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=83.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccC----C
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYF----E  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~----~  139 (252)
                      ...|||||||+|..++.+|+..| +..++++|+++.+++.|++++...      ++. ++.++.+|+.+.++...    .
T Consensus        71 ~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------g~~~~i~~~~gda~~~l~~l~~~~~~  144 (237)
T 3c3y_A           71 AKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA------GVEHKINFIESDAMLALDNLLQGQES  144 (237)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHHHHHHSTTC
T ss_pred             CCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHHHHhccCC
Confidence            34899999999999999999987 789999999999999999888654      554 69999999976554221    2


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++++|.|++..+.+           ....+++.+.++|+|||.|++.
T Consensus       145 ~~~fD~I~~d~~~~-----------~~~~~l~~~~~~L~pGG~lv~d  180 (237)
T 3c3y_A          145 EGSYDFGFVDADKP-----------NYIKYHERLMKLVKVGGIVAYD  180 (237)
T ss_dssp             TTCEEEEEECSCGG-----------GHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCCcCEEEECCchH-----------HHHHHHHHHHHhcCCCeEEEEe
Confidence            57899999863211           1246999999999999999874

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.49  E-value=5.3e-14  Score=120.27  Aligned_cols=102  Identities=21%  Similarity=0.369  Sum_probs=84.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|+..++|+|+++.+++.|+++           ..++.++.+|+.. ++  ++++++|.
T Consensus        86 ~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-----------~~~~~~~~~d~~~-~~--~~~~~fD~  151 (269)
T 1p91_A           86 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----------YPQVTFCVASSHR-LP--FSDTSMDA  151 (269)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----------CTTSEEEECCTTS-CS--BCTTCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh-----------CCCcEEEEcchhh-CC--CCCCceeE
Confidence            5589999999999999999998888999999999999887653           2468899999863 44  56789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      |+.++..               .+++++.++|||||.+++.+........+
T Consensus       152 v~~~~~~---------------~~l~~~~~~L~pgG~l~~~~~~~~~~~~~  187 (269)
T 1p91_A          152 IIRIYAP---------------CKAEELARVVKPGGWVITATPGPRHLMEL  187 (269)
T ss_dssp             EEEESCC---------------CCHHHHHHHEEEEEEEEEEEECTTTTHHH
T ss_pred             EEEeCCh---------------hhHHHHHHhcCCCcEEEEEEcCHHHHHHH
Confidence            9987641               26899999999999999998776544433

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.49  E-value=1.5e-13  Score=115.20  Aligned_cols=105  Identities=16%  Similarity=0.238  Sum_probs=82.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++... ..++|+|+++.+++.|+++.         ...++.++.+|+.. ++  ++++++|.
T Consensus        44 ~~~vLdiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~-~~--~~~~~fD~  110 (243)
T 3bkw_A           44 GLRIVDLGCGFGWFCRWAHEHGA-SYVLGLDLSEKMLARARAAG---------PDTGITYERADLDK-LH--LPQDSFDL  110 (243)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHTS---------CSSSEEEEECCGGG-CC--CCTTCEEE
T ss_pred             CCEEEEEcCcCCHHHHHHHHCCC-CeEEEEcCCHHHHHHHHHhc---------ccCCceEEEcChhh-cc--CCCCCceE
Confidence            45899999999999999999832 38999999999998887543         22479999999874 43  56789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      |++...-.+...        ...+++++.++|+|||.+++.+.+..
T Consensus       111 v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~~~~~  148 (243)
T 3bkw_A          111 AYSSLALHYVED--------VARLFRTVHQALSPGGHFVFSTEHPI  148 (243)
T ss_dssp             EEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred             EEEeccccccch--------HHHHHHHHHHhcCcCcEEEEEeCCcc
Confidence            998764333211        23699999999999999999886643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.49  E-value=6.1e-14  Score=117.55  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=81.0

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..++..  +..++|+|+|+.+++.|++++...     ....++.++.+|+.. +   .+++++|.|
T Consensus        68 ~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~-----~~~~~v~~~~~d~~~-~---~~~~~fD~v  136 (235)
T 3lcc_A           68 GRALVPGCGGGHDVVAMASP--ERFVVGLDISESALAKANETYGSS-----PKAEYFSFVKEDVFT-W---RPTELFDLI  136 (235)
T ss_dssp             EEEEEETCTTCHHHHHHCBT--TEEEEEECSCHHHHHHHHHHHTTS-----GGGGGEEEECCCTTT-C---CCSSCEEEE
T ss_pred             CCEEEeCCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHhhcc-----CCCcceEEEECchhc-C---CCCCCeeEE
Confidence            48999999999999999874  778999999999999998776321     234689999999874 3   245699999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +.+..-.+....      ....+++++.++|+|||.+++..
T Consensus       137 ~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  171 (235)
T 3lcc_A          137 FDYVFFCAIEPE------MRPAWAKSMYELLKPDGELITLM  171 (235)
T ss_dssp             EEESSTTTSCGG------GHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEChhhhcCCHH------HHHHHHHHHHHHCCCCcEEEEEE
Confidence            987654332210      12369999999999999999865

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.48  E-value=1.1e-13  Score=115.38  Aligned_cols=104  Identities=16%  Similarity=0.213  Sum_probs=83.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-----CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-----cccEEEEeCCcccccC
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-----PEVLMIGMELRDKVTEYVKERILALRVSNPGQ-----YQNISVVRTNSMKYIP  135 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-----p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-----~~nv~~~~~da~~~l~  135 (252)
                      ...|||||||+|.++..+++..     |...++|+|+++.+++.|++++...      +     ..|+.++.+|+...+.
T Consensus        81 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~v~~~~~d~~~~~~  154 (227)
T 2pbf_A           81 GSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD------KPELLKIDNFKIIHKNIYQVNE  154 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH------CGGGGSSTTEEEEECCGGGCCH
T ss_pred             CCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc------CccccccCCEEEEECChHhccc
Confidence            4589999999999999999986     5679999999999999999887664      4     5789999999864220


Q ss_pred             c-cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          136 N-YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       136 ~-~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      . ....+.+|.|++..+.++              +++.+.++|+|||++++....
T Consensus       155 ~~~~~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lv~~~~~  195 (227)
T 2pbf_A          155 EEKKELGLFDAIHVGASASE--------------LPEILVDLLAENGKLIIPIEE  195 (227)
T ss_dssp             HHHHHHCCEEEEEECSBBSS--------------CCHHHHHHEEEEEEEEEEEEE
T ss_pred             ccCccCCCcCEEEECCchHH--------------HHHHHHHhcCCCcEEEEEEcc
Confidence            0 023578999998766543              568899999999999998753

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.48  E-value=9.8e-14  Score=116.77  Aligned_cols=104  Identities=15%  Similarity=0.159  Sum_probs=83.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC-CC--
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF-EK--  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~-~~--  140 (252)
                      ...|||||||+|.++..+|+..| +..++|+|+++.+++.|++++...      ++ .++.++.+|+.+.++... .+  
T Consensus        73 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------g~~~~i~~~~~d~~~~l~~l~~~~~~  146 (232)
T 3cbg_A           73 AKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA------GVAEKISLRLGPALATLEQLTQGKPL  146 (232)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH------TCGGGEEEEESCHHHHHHHHHTSSSC
T ss_pred             CCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEEcCHHHHHHHHHhcCCC
Confidence            34899999999999999999987 689999999999999999887665      45 469999999875443221 12  


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +++|.|++..+.+.           ...+++.+.++|+|||.|++.
T Consensus       147 ~~fD~V~~d~~~~~-----------~~~~l~~~~~~LkpgG~lv~~  181 (232)
T 3cbg_A          147 PEFDLIFIDADKRN-----------YPRYYEIGLNLLRRGGLMVID  181 (232)
T ss_dssp             CCEEEEEECSCGGG-----------HHHHHHHHHHTEEEEEEEEEE
T ss_pred             CCcCEEEECCCHHH-----------HHHHHHHHHHHcCCCeEEEEe
Confidence            78999998654211           236999999999999999884

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=99.48  E-value=5.7e-14  Score=123.83  Aligned_cols=115  Identities=14%  Similarity=0.151  Sum_probs=83.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|...+++||+++.+++.|++++....  .....+++.++.+|+.+.+..  .++++|.
T Consensus       109 ~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~--~~~~~~rv~~~~~D~~~~l~~--~~~~fD~  184 (314)
T 2b2c_A          109 PKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS--CGFSHPKLDLFCGDGFEFLKN--HKNEFDV  184 (314)
T ss_dssp             CCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS--GGGGCTTEEEECSCHHHHHHH--CTTCEEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhc--cccCCCCEEEEEChHHHHHHh--cCCCceE
Confidence            348999999999999999998788899999999999999987653210  000136899999999765542  4678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++.++|+...    ..+....+++.+.++|+|||.+++.+.
T Consensus       185 Ii~d~~~~~~~~----~~l~t~~~l~~~~~~LkpgG~lv~~~~  223 (314)
T 2b2c_A          185 IITDSSDPVGPA----ESLFGQSYYELLRDALKEDGILSSQGE  223 (314)
T ss_dssp             EEECCC-----------------HHHHHHHHEEEEEEEEEECC
T ss_pred             EEEcCCCCCCcc----hhhhHHHHHHHHHhhcCCCeEEEEECC
Confidence            999988876321    223346799999999999999999763

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.48  E-value=9.9e-14  Score=116.64  Aligned_cols=101  Identities=15%  Similarity=0.214  Sum_probs=82.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC-Cccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK-GQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~-~s~d  144 (252)
                      ...|||||||+|.++..+++..+ ..++|+|+++.+++.|++++...      ++.|+.++.+|+..  .  +++ ..+|
T Consensus        92 ~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~~~------~~~~v~~~~~d~~~--~--~~~~~~fD  160 (235)
T 1jg1_A           92 GMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGSK--G--FPPKAPYD  160 (235)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGG--C--CGGGCCEE
T ss_pred             CCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHc------CCCCcEEEECCccc--C--CCCCCCcc
Confidence            45899999999999999999987 78999999999999999887653      67789999999732  2  333 3599


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      .|++..+.++              +.+.+.++|+|||.+++.+.+..
T Consensus       161 ~Ii~~~~~~~--------------~~~~~~~~L~pgG~lvi~~~~~~  193 (235)
T 1jg1_A          161 VIIVTAGAPK--------------IPEPLIEQLKIGGKLIIPVGSYH  193 (235)
T ss_dssp             EEEECSBBSS--------------CCHHHHHTEEEEEEEEEEECSSS
T ss_pred             EEEECCcHHH--------------HHHHHHHhcCCCcEEEEEEecCC
Confidence            9998765544              33578899999999999987643

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.48  E-value=3e-13  Score=116.60  Aligned_cols=106  Identities=14%  Similarity=0.285  Sum_probs=80.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.. +..++|+|+|+.+++.|++++...     ...+++.++.+|+.+ +    + +++|.
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvd~s~~~~~~a~~~~~~~-----~~~~~~~~~~~d~~~-~----~-~~fD~  132 (287)
T 1kpg_A           65 GMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANS-----ENLRSKRVLLAGWEQ-F----D-EPVDR  132 (287)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTC-----CCCSCEEEEESCGGG-C----C-CCCSE
T ss_pred             cCEEEEECCcccHHHHHHHHHc-CCEEEEEECCHHHHHHHHHHHHhc-----CCCCCeEEEECChhh-C----C-CCeeE
Confidence            4589999999999999999766 459999999999999998876432     223589999999853 3    2 78999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++...-.+....      ....+++++.++|||||.+++.+..
T Consensus       133 v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~~  170 (287)
T 1kpg_A          133 IVSIGAFEHFGHE------RYDAFFSLAHRLLPADGVMLLHTIT  170 (287)
T ss_dssp             EEEESCGGGTCTT------THHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred             EEEeCchhhcChH------HHHHHHHHHHHhcCCCCEEEEEEec
Confidence            9986432221000      1136999999999999999997643

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.48  E-value=2e-13  Score=117.74  Aligned_cols=113  Identities=13%  Similarity=0.088  Sum_probs=85.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC-CCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF-EKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~-~~~s~  143 (252)
                      ...|||||||+|.++..+++. +...++|+|+++.+++.|++++...      +. .++.++++|+.. ++  + +++++
T Consensus        65 ~~~vLDiGcG~G~~~~~l~~~-~~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~~~~~~f  134 (298)
T 1ri5_A           65 GDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARNM------KRRFKVFFRAQDSYG-RH--MDLGKEF  134 (298)
T ss_dssp             TCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHTS------CCSSEEEEEESCTTT-SC--CCCSSCE
T ss_pred             CCeEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhc------CCCccEEEEECCccc-cc--cCCCCCc
Confidence            458999999999999998887 4558999999999999998876432      33 579999999864 33  3 57899


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      |.|++.+.-.+.- .+.   .....+++++.++|+|||.+++.+.+...
T Consensus       135 D~v~~~~~l~~~~-~~~---~~~~~~l~~~~~~LkpgG~l~~~~~~~~~  179 (298)
T 1ri5_A          135 DVISSQFSFHYAF-STS---ESLDIAQRNIARHLRPGGYFIMTVPSRDV  179 (298)
T ss_dssp             EEEEEESCGGGGG-SSH---HHHHHHHHHHHHTEEEEEEEEEEEECHHH
T ss_pred             CEEEECchhhhhc-CCH---HHHHHHHHHHHHhcCCCCEEEEEECCHHH
Confidence            9999886532210 000   01236999999999999999999877543

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.48  E-value=1.5e-13  Score=116.07  Aligned_cols=105  Identities=11%  Similarity=0.085  Sum_probs=82.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++... ...++|+|+++.+++.|++++.        ...++.++++|+.. ++  ++++++|.
T Consensus        94 ~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~--------~~~~~~~~~~d~~~-~~--~~~~~fD~  161 (254)
T 1xtp_A           94 TSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELA--------GMPVGKFILASMET-AT--LPPNTYDL  161 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTT--------TSSEEEEEESCGGG-CC--CCSSCEEE
T ss_pred             CCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhc--------cCCceEEEEccHHH-CC--CCCCCeEE
Confidence            4589999999999999999986 4579999999999998887542        22689999999864 44  56789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++...-.+....      ....+++++.++|||||.+++.+.
T Consensus       162 v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~  198 (254)
T 1xtp_A          162 IVIQWTAIYLTDA------DFVKFFKHCQQALTPNGYIFFKEN  198 (254)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             EEEcchhhhCCHH------HHHHHHHHHHHhcCCCeEEEEEec
Confidence            9987643332100      123699999999999999999874

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.47  E-value=1.4e-13  Score=121.23  Aligned_cols=102  Identities=18%  Similarity=0.222  Sum_probs=83.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+..+ +..++|+|+++.+++.|++++...      +++|+.++.+|+.+.+   ..++++|
T Consensus        76 ~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------g~~~v~~~~~d~~~~~---~~~~~fD  146 (317)
T 1dl5_A           76 GMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYGV---PEFSPYD  146 (317)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGCC---GGGCCEE
T ss_pred             cCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCeEEEECChhhcc---ccCCCeE
Confidence            45899999999999999999976 477999999999999999887653      7788999999987422   2357899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      .|++..+-++              +.+.+.++|||||++++.....
T Consensus       147 ~Iv~~~~~~~--------------~~~~~~~~LkpgG~lvi~~~~~  178 (317)
T 1dl5_A          147 VIFVTVGVDE--------------VPETWFTQLKEGGRVIVPINLK  178 (317)
T ss_dssp             EEEECSBBSC--------------CCHHHHHHEEEEEEEEEEBCBG
T ss_pred             EEEEcCCHHH--------------HHHHHHHhcCCCcEEEEEECCC
Confidence            9999876544              2257889999999999987553

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.47  E-value=1.4e-13  Score=112.92  Aligned_cols=107  Identities=16%  Similarity=0.140  Sum_probs=80.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++.. ++..++|+|+|+.+++.|++++...      + .++.++++|+.. ++  ++++++|.
T Consensus        24 ~~~vLDiGcG~G~~~~~~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~------~-~~~~~~~~d~~~-~~--~~~~~fD~   92 (209)
T 2p8j_A           24 DKTVLDCGAGGDLPPLSIFVE-DGYKTYGIEISDLQLKKAENFSREN------N-FKLNISKGDIRK-LP--FKDESMSF   92 (209)
T ss_dssp             CSEEEEESCCSSSCTHHHHHH-TTCEEEEEECCHHHHHHHHHHHHHH------T-CCCCEEECCTTS-CC--SCTTCEEE
T ss_pred             CCEEEEECCCCCHHHHHHHHh-CCCEEEEEECCHHHHHHHHHHHHhc------C-CceEEEECchhh-CC--CCCCceeE
Confidence            458999999999985555444 4679999999999999998877553      2 578999999863 43  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++...-.+..      .-....+++++.++|+|||.+++.+-.
T Consensus        93 v~~~~~l~~~~------~~~~~~~l~~~~~~LkpgG~l~~~~~~  130 (209)
T 2p8j_A           93 VYSYGTIFHMR------KNDVKEAIDEIKRVLKPGGLACINFLT  130 (209)
T ss_dssp             EEECSCGGGSC------HHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             EEEcChHHhCC------HHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence            99864332210      001236999999999999999997643

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.47  E-value=2.6e-13  Score=113.07  Aligned_cols=106  Identities=13%  Similarity=0.103  Sum_probs=82.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. +...++|+|+++.+++.|++++..... ...+..|+.++.+|+.. .  ....+.+|
T Consensus        78 ~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~v~~~~~d~~~-~--~~~~~~fD  153 (226)
T 1i1n_A           78 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP-TLLSSGRVQLVVGDGRM-G--YAEEAPYD  153 (226)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT-HHHHTSSEEEEESCGGG-C--CGGGCCEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcc-cccCCCcEEEEECCccc-C--cccCCCcC
Confidence            4589999999999999999984 667999999999999999988765300 00014689999999863 2  23367899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|++..+.+.              +++.+.++|||||.+++.+..
T Consensus       154 ~i~~~~~~~~--------------~~~~~~~~LkpgG~lv~~~~~  184 (226)
T 1i1n_A          154 AIHVGAAAPV--------------VPQALIDQLKPGGRLILPVGP  184 (226)
T ss_dssp             EEEECSBBSS--------------CCHHHHHTEEEEEEEEEEESC
T ss_pred             EEEECCchHH--------------HHHHHHHhcCCCcEEEEEEec
Confidence            9998765432              567899999999999998753

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.47  E-value=3.8e-13  Score=117.81  Aligned_cols=104  Identities=14%  Similarity=0.279  Sum_probs=81.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. +..++|+|+|+.+++.|++++...      ++ +++.++.+|+.+ +     ++++|
T Consensus        91 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~-----~~~fD  157 (318)
T 2fk8_A           91 GMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASI------DTNRSRQVLLQGWED-F-----AEPVD  157 (318)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTS------CCSSCEEEEESCGGG-C-----CCCCS
T ss_pred             cCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHHhc------CCCCceEEEECChHH-C-----CCCcC
Confidence            5589999999999999999986 569999999999999998876532      44 469999999863 3     27899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++...-.+....      ....+++++.++|||||.+++.+.
T Consensus       158 ~v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~~  195 (318)
T 2fk8_A          158 RIVSIEAFEHFGHE------NYDDFFKRCFNIMPADGRMTVQSS  195 (318)
T ss_dssp             EEEEESCGGGTCGG------GHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             EEEEeChHHhcCHH------HHHHHHHHHHHhcCCCcEEEEEEe
Confidence            99987432221100      123699999999999999999764

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.47  E-value=4.7e-13  Score=110.81  Aligned_cols=153  Identities=16%  Similarity=0.090  Sum_probs=102.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++. + ..++|+|+++.+++.|+++           .  ..++.+|+.. +...++++++|.
T Consensus        33 ~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~-----------~--~~~~~~d~~~-~~~~~~~~~fD~   96 (230)
T 3cc8_A           33 WKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEK-----------L--DHVVLGDIET-MDMPYEEEQFDC   96 (230)
T ss_dssp             CSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTT-----------S--SEEEESCTTT-CCCCSCTTCEEE
T ss_pred             CCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHh-----------C--CcEEEcchhh-cCCCCCCCccCE
Confidence            458999999999999999998 4 8999999999998876532           1  2678888863 223366789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS  225 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  225 (252)
                      |+++..-.+...        ...+++++.++|+|||.+++.+.+..........+...  +...... .. ++.......
T Consensus        97 v~~~~~l~~~~~--------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~-~~~~~~~~~  164 (230)
T 3cc8_A           97 VIFGDVLEHLFD--------PWAVIEKVKPYIKQNGVILASIPNVSHISVLAPLLAGN--WTYTEYG-LL-DKTHIRFFT  164 (230)
T ss_dssp             EEEESCGGGSSC--------HHHHHHHTGGGEEEEEEEEEEEECTTSHHHHHHHHTTC--CCCBSSS-TT-BTTCCCCCC
T ss_pred             EEECChhhhcCC--------HHHHHHHHHHHcCCCCEEEEEeCCcchHHHHHHHhcCC--ceeccCC-CC-CcceEEEec
Confidence            998653322211        12699999999999999999887655544444433222  2111110 10 111111244


Q ss_pred             CCHHHHHHHHcCCCeEEEEEE
Q 025470          226 ATEEGQKVARNGGQTFQAVFR  246 (252)
Q Consensus       226 ~t~~e~~~~~~G~~i~~~~~~  246 (252)
                      ..++.....+.|.++-.+...
T Consensus       165 ~~~~~~~l~~~Gf~~~~~~~~  185 (230)
T 3cc8_A          165 FNEMLRMFLKAGYSISKVDRV  185 (230)
T ss_dssp             HHHHHHHHHHTTEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCeEEEEEec
Confidence            557788888899887666554

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.47  E-value=2.3e-13  Score=114.94  Aligned_cols=106  Identities=17%  Similarity=0.319  Sum_probs=81.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|++++...      +. ++.++++|+.. ++  + ++++|.
T Consensus        42 ~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~~~------~~-~v~~~~~d~~~-~~--~-~~~fD~  108 (252)
T 1wzn_A           42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER------NL-KIEFLQGDVLE-IA--F-KNEFDA  108 (252)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TC-CCEEEESCGGG-CC--C-CSCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHhc------CC-ceEEEECChhh-cc--c-CCCccE
Confidence            458999999999999999997  668999999999999998877542      33 79999999874 43  2 468999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++.+........     -....+++.+.++|+|||.+++.+.+
T Consensus       109 v~~~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~li~~~~~  147 (252)
T 1wzn_A          109 VTMFFSTIMYFDE-----EDLRKLFSKVAEALKPGGVFITDFPC  147 (252)
T ss_dssp             EEECSSGGGGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEcCCchhcCCH-----HHHHHHHHHHHHHcCCCeEEEEeccc
Confidence            9876543221100     01236999999999999999987644

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.46  E-value=4.3e-13  Score=107.53  Aligned_cols=116  Identities=13%  Similarity=0.137  Sum_probs=85.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..   .++|+|+|+.|++.               ..|+.++++|+.+    .++++++|.
T Consensus        24 ~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~---------------~~~~~~~~~d~~~----~~~~~~fD~   81 (170)
T 3q87_B           24 MKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES---------------HRGGNLVRADLLC----SINQESVDV   81 (170)
T ss_dssp             SCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT---------------CSSSCEEECSTTT----TBCGGGCSE
T ss_pred             CCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc---------------ccCCeEEECChhh----hcccCCCCE
Confidence            4489999999999999999986   89999999998754               3468899999864    244589999


Q ss_pred             EEEeCCCCcccccc-ccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKN-HRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h-~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |+++.|--|..... .........+++.+.+.| |||.+++.+........+.+.+.+.+
T Consensus        82 i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~~~~~~~l~~~l~~~g  140 (170)
T 3q87_B           82 VVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIEANRPKEVLARLEERG  140 (170)
T ss_dssp             EEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEGGGCHHHHHHHHHHTT
T ss_pred             EEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEecCCCHHHHHHHHHHCC
Confidence            99986543322110 000001125888899999 99999998866666777777777665

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.46  E-value=2.1e-13  Score=123.39  Aligned_cols=110  Identities=16%  Similarity=0.147  Sum_probs=80.4

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh-cCCCCc--ccEEEEeCCcccccCccCCC-
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV-SNPGQY--QNISVVRTNSMKYIPNYFEK-  140 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~-~~~~~~--~nv~~~~~da~~~l~~~~~~-  140 (252)
                      +...|||||||+|.+++.+|...+...++|||+++.+++.|++++...+. ....++  .+|.|+++|+.+ ++  +.+ 
T Consensus       173 ~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~-lp--~~d~  249 (438)
T 3uwp_A          173 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS-EE--WRER  249 (438)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS-HH--HHHH
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC-Cc--cccc
Confidence            35699999999999999999987766799999999999999876543210 011233  689999999864 33  222 


Q ss_pred             -CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 -GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 -~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                       ..+|.|++|.+--++.         ....|.++.++|||||+|++.
T Consensus       250 ~~~aDVVf~Nn~~F~pd---------l~~aL~Ei~RvLKPGGrIVss  287 (438)
T 3uwp_A          250 IANTSVIFVNNFAFGPE---------VDHQLKERFANMKEGGRIVSS  287 (438)
T ss_dssp             HHTCSEEEECCTTCCHH---------HHHHHHHHHTTSCTTCEEEES
T ss_pred             cCCccEEEEcccccCch---------HHHHHHHHHHcCCCCcEEEEe
Confidence             4689999875421211         124678899999999999873

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.45  E-value=6.8e-13  Score=109.24  Aligned_cols=98  Identities=12%  Similarity=0.104  Sum_probs=77.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|++++            ++.++.+|+.. ++   .++++|.
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~------------~~~~~~~d~~~-~~---~~~~fD~  105 (211)
T 3e23_A           44 GAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL------------GRPVRTMLFHQ-LD---AIDAYDA  105 (211)
T ss_dssp             TCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH------------TSCCEECCGGG-CC---CCSCEEE
T ss_pred             CCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc------------CCceEEeeecc-CC---CCCcEEE
Confidence            458999999999999999998  668999999999998887653            46778889863 44   5789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.+....      ....+++++.++|||||.+++.+
T Consensus       106 v~~~~~l~~~~~~------~~~~~l~~~~~~LkpgG~l~~~~  141 (211)
T 3e23_A          106 VWAHACLLHVPRD------ELADVLKLIWRALKPGGLFYASY  141 (211)
T ss_dssp             EEECSCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEecCchhhcCHH------HHHHHHHHHHHhcCCCcEEEEEE
Confidence            9987543332100      11369999999999999999975

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.45  E-value=1.6e-13  Score=119.03  Aligned_cols=109  Identities=17%  Similarity=0.209  Sum_probs=77.8

Q ss_pred             CceEEEEcCcccHHHH----HHHHHCCCCeE--EEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE--EeCCcccccC--
Q 025470           66 KIQFADIGCGFGGLLI----SLSTLFPEVLM--IGMELRDKVTEYVKERILALRVSNPGQYQNISV--VRTNSMKYIP--  135 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~----~lA~~~p~~~~--iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~--~~~da~~~l~--  135 (252)
                      ...|||||||+|.++.    .++..+|...+  +|+|+|+.|++.|++++..     ..+++|+.+  ..+++.+ +.  
T Consensus        53 ~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~-----~~~~~~v~~~~~~~~~~~-~~~~  126 (292)
T 2aot_A           53 EIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAK-----TSNLENVKFAWHKETSSE-YQSR  126 (292)
T ss_dssp             EEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHT-----CSSCTTEEEEEECSCHHH-HHHH
T ss_pred             CCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHh-----ccCCCcceEEEEecchhh-hhhh
Confidence            3489999999997654    44556677754  9999999999998876532     124566654  4566542 22  


Q ss_pred             --ccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          136 --NYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       136 --~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                        ..++++++|.|++.+.-.|....        ..+|++++++|||||.|++...
T Consensus       127 ~~~~~~~~~fD~V~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~l~i~~~  173 (292)
T 2aot_A          127 MLEKKELQKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIVV  173 (292)
T ss_dssp             HHTTTCCCCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred             hccccCCCceeEEEEeeeeeecCCH--------HHHHHHHHHHcCCCcEEEEEEe
Confidence              11457899999987654443221        2599999999999999998753

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.45  E-value=8.4e-13  Score=111.47  Aligned_cols=105  Identities=12%  Similarity=0.087  Sum_probs=77.2

Q ss_pred             CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..|||+|||+|.++..+|+. .|...|+|+|+++.|++...+...        ...|+.++.+|+..........+++
T Consensus        76 ~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~--------~r~nv~~i~~Da~~~~~~~~~~~~~  147 (232)
T 3id6_C           76 KGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ--------RRPNIFPLLADARFPQSYKSVVENV  147 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH--------HCTTEEEEECCTTCGGGTTTTCCCE
T ss_pred             CCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh--------hcCCeEEEEcccccchhhhccccce
Confidence            3569999999999999999987 567899999999998754433222        1268999999986421111124689


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+++.+.|+..          ..++..+.++|||||.|++..
T Consensus       148 D~I~~d~a~~~~~----------~il~~~~~~~LkpGG~lvisi  181 (232)
T 3id6_C          148 DVLYVDIAQPDQT----------DIAIYNAKFFLKVNGDMLLVI  181 (232)
T ss_dssp             EEEEECCCCTTHH----------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecCCChhHH----------HHHHHHHHHhCCCCeEEEEEE
Confidence            9999998776521          124455666999999999863

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.45  E-value=6.9e-13  Score=128.42  Aligned_cols=119  Identities=14%  Similarity=0.122  Sum_probs=91.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..||+.. |...++|||+++.|++.|++++.........+.+|+.|+++|+.+ ++  +.++++|
T Consensus       722 g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~d-Lp--~~d~sFD  798 (950)
T 3htx_A          722 ASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILE-FD--SRLHDVD  798 (950)
T ss_dssp             CSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTS-CC--TTSCSCC
T ss_pred             CCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHh-CC--cccCCee
Confidence            4589999999999999999997 567999999999999999887765422223467899999999874 44  5678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD  194 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~  194 (252)
                      .|++...-.+....      ....+++++.++|||| .+++.|.+.++..
T Consensus       799 lVV~~eVLeHL~dp------~l~~~L~eI~RvLKPG-~LIISTPN~eyN~  841 (950)
T 3htx_A          799 IGTCLEVIEHMEED------QACEFGEKVLSLFHPK-LLIVSTPNYEFNT  841 (950)
T ss_dssp             EEEEESCGGGSCHH------HHHHHHHHHHHTTCCS-EEEEEECBGGGHH
T ss_pred             EEEEeCchhhCChH------HHHHHHHHHHHHcCCC-EEEEEecCchhhh
Confidence            99986543332110      1124899999999999 8888888776543

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.45  E-value=8.5e-14  Score=121.07  Aligned_cols=109  Identities=14%  Similarity=0.152  Sum_probs=83.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc---ccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY---QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~---~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ..|||||||+|.++..+++.  +..++|+|+|+.+++.|++++...      +.   .|+.++++|+.. ++  + ++++
T Consensus        84 ~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~~~------~~~~~~~v~~~~~d~~~-~~--~-~~~f  151 (299)
T 3g2m_A           84 GPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLAEA------PADVRDRCTLVQGDMSA-FA--L-DKRF  151 (299)
T ss_dssp             SCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHHTS------CHHHHTTEEEEECBTTB-CC--C-SCCE
T ss_pred             CcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHhhc------ccccccceEEEeCchhc-CC--c-CCCc
Confidence            48999999999999999998  578999999999999998876432      32   689999999874 44  3 6899


Q ss_pred             cEEEEeCC-CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025470          144 TKMFFLFP-DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG  193 (252)
Q Consensus       144 d~i~~~fp-dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~  193 (252)
                      |.|++.+. -.+...      -....+++++.++|+|||.|++.+.+.+..
T Consensus       152 D~v~~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~  196 (299)
T 3g2m_A          152 GTVVISSGSINELDE------ADRRGLYASVREHLEPGGKFLLSLAMSEAA  196 (299)
T ss_dssp             EEEEECHHHHTTSCH------HHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred             CEEEECCcccccCCH------HHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence            98885321 111100      011369999999999999999998776554

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.45  E-value=3.1e-14  Score=119.78  Aligned_cols=100  Identities=11%  Similarity=0.078  Sum_probs=79.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+.  +..++|+|+|+.+++.|++++...      ++ +|+.++++|+.. +.   +++++|
T Consensus        79 ~~~vLD~gcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~~~------~~~~~~~~~~~d~~~-~~---~~~~~D  146 (241)
T 3gdh_A           79 CDVVVDAFCGVGGNTIQFALT--GMRVIAIDIDPVKIALARNNAEVY------GIADKIEFICGDFLL-LA---SFLKAD  146 (241)
T ss_dssp             CSEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHH-HG---GGCCCS
T ss_pred             CCEEEECccccCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc------CCCcCeEEEECChHH-hc---ccCCCC
Confidence            458999999999999999998  479999999999999999887654      55 689999999875 32   467999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .|+++.|--+.....        ..+.++.++|+|||.+++
T Consensus       147 ~v~~~~~~~~~~~~~--------~~~~~~~~~L~pgG~~i~  179 (241)
T 3gdh_A          147 VVFLSPPWGGPDYAT--------AETFDIRTMMSPDGFEIF  179 (241)
T ss_dssp             EEEECCCCSSGGGGG--------SSSBCTTTSCSSCHHHHH
T ss_pred             EEEECCCcCCcchhh--------hHHHHHHhhcCCcceeHH
Confidence            999987655433211        144467888999998654

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.45  E-value=5.2e-13  Score=112.42  Aligned_cols=106  Identities=20%  Similarity=0.246  Sum_probs=79.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc--cCCC-Cc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN--YFEK-GQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~--~~~~-~s  142 (252)
                      ...|||||||+|.++..+|+..+  .++|+|+|+.+++.|++++         ...|+.++++|+.+ ++.  .+++ ..
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~~~--~v~gvD~s~~~~~~a~~~~---------~~~~~~~~~~d~~~-~~~~~~~~~~~~  124 (245)
T 3ggd_A           57 ELPLIDFACGNGTQTKFLSQFFP--RVIGLDVSKSALEIAAKEN---------TAANISYRLLDGLV-PEQAAQIHSEIG  124 (245)
T ss_dssp             TSCEEEETCTTSHHHHHHHHHSS--CEEEEESCHHHHHHHHHHS---------CCTTEEEEECCTTC-HHHHHHHHHHHC
T ss_pred             CCeEEEEcCCCCHHHHHHHHhCC--CEEEEECCHHHHHHHHHhC---------cccCceEEECcccc-cccccccccccC
Confidence            45899999999999999999976  7999999999999887653         33489999999864 221  1111 23


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      +|.|+++..-.+....      ....+++++.++|||||.+++..-.
T Consensus       125 ~d~v~~~~~~~~~~~~------~~~~~l~~~~~~LkpgG~l~i~~~~  165 (245)
T 3ggd_A          125 DANIYMRTGFHHIPVE------KRELLGQSLRILLGKQGAMYLIELG  165 (245)
T ss_dssp             SCEEEEESSSTTSCGG------GHHHHHHHHHHHHTTTCEEEEEEEC
T ss_pred             ccEEEEcchhhcCCHH------HHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            8899887654443211      1136999999999999998876543

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.44  E-value=2.7e-13  Score=113.50  Aligned_cols=109  Identities=9%  Similarity=0.100  Sum_probs=84.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+++.+++.|++++...      +. ++.++++|+.. ++  ++ +++|.
T Consensus        38 ~~~vLdiG~G~G~~~~~l~~~--~~~~~~~D~s~~~~~~a~~~~~~~------~~-~~~~~~~d~~~-~~--~~-~~fD~  104 (246)
T 1y8c_A           38 FDDYLDLACGTGNLTENLCPK--FKNTWAVDLSQEMLSEAENKFRSQ------GL-KPRLACQDISN-LN--IN-RKFDL  104 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGG--SSEEEEECSCHHHHHHHHHHHHHT------TC-CCEEECCCGGG-CC--CS-CCEEE
T ss_pred             CCeEEEeCCCCCHHHHHHHHC--CCcEEEEECCHHHHHHHHHHHhhc------CC-CeEEEeccccc-CC--cc-CCceE
Confidence            458999999999999999998  568999999999999998876542      33 79999999864 43  33 78999


Q ss_pred             EEEeC-CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          146 MFFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       146 i~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      |+++. .-.+.....     ....+++++.++|+|||.+++.+.+...
T Consensus       105 v~~~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~~~~~~~~~  147 (246)
T 1y8c_A          105 ITCCLDSTNYIIDSD-----DLKKYFKAVSNHLKEGGVFIFDINSYYK  147 (246)
T ss_dssp             EEECTTGGGGCCSHH-----HHHHHHHHHHTTEEEEEEEEEEEECHHH
T ss_pred             EEEcCccccccCCHH-----HHHHHHHHHHHhcCCCcEEEEEecCHHH
Confidence            99876 433321100     1236999999999999999998766543

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.44  E-value=6.6e-13  Score=116.21  Aligned_cols=119  Identities=16%  Similarity=0.157  Sum_probs=87.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-CCCCcccEEEEeCCcccccC--ccCC--C
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-NPGQYQNISVVRTNSMKYIP--NYFE--K  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-~~~~~~nv~~~~~da~~~l~--~~~~--~  140 (252)
                      ...|||||||+|.++..+++. +...++|+|+|+.|++.|+++....... ......++.++++|+.. ++  ..++  +
T Consensus        35 ~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~-~~~~~~~~~~~  112 (313)
T 3bgv_A           35 DITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSK-ELLIDKFRDPQ  112 (313)
T ss_dssp             CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTT-SCSTTTCSSTT
T ss_pred             CCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccc-cchhhhcccCC
Confidence            458999999999999999985 5779999999999999998876543100 00134589999999874 32  1132  4


Q ss_pred             CcccEEEEeCCCCcc-ccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          141 GQLTKMFFLFPDPHF-KEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~-k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      +++|.|++++.-.|. ....     ....+++++.++|||||.+++.+.+.+
T Consensus       113 ~~fD~V~~~~~l~~~~~~~~-----~~~~~l~~~~~~LkpgG~li~~~~~~~  159 (313)
T 3bgv_A          113 MCFDICSCQFVCHYSFESYE-----QADMMLRNACERLSPGGYFIGTTPNSF  159 (313)
T ss_dssp             CCEEEEEEETCGGGGGGSHH-----HHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             CCEEEEEEecchhhccCCHH-----HHHHHHHHHHHHhCCCcEEEEecCChH
Confidence            589999998866553 1100     013699999999999999999987654

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.44  E-value=4.7e-13  Score=120.91  Aligned_cols=121  Identities=13%  Similarity=0.168  Sum_probs=91.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.++..+++.  +..++|||+++.+++.|++++...      +. ++.++.+|+.+..   .+++++|.
T Consensus       234 ~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~~~------~~-~v~~~~~D~~~~~---~~~~~fD~  301 (381)
T 3dmg_A          234 GRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLEAN------AL-KAQALHSDVDEAL---TEEARFDI  301 (381)
T ss_dssp             TCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHHHT------TC-CCEEEECSTTTTS---CTTCCEEE
T ss_pred             CCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc------CC-CeEEEEcchhhcc---ccCCCeEE
Confidence            458999999999999999998  569999999999999999887653      33 3899999986422   33579999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch-HHHHHHHHHHh
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE-ELGDWMRSCLE  201 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~-~~~~~~~~~~~  201 (252)
                      |+++.|-.+.....   .-....+++++.++|+|||.++++++.. .|...+.+.+.
T Consensus       302 Ii~npp~~~~~~~~---~~~~~~~l~~~~~~LkpGG~l~iv~n~~l~~~~~l~~~f~  355 (381)
T 3dmg_A          302 IVTNPPFHVGGAVI---LDVAQAFVNVAAARLRPGGVFFLVSNPFLKYEPLLEEKFG  355 (381)
T ss_dssp             EEECCCCCTTCSSC---CHHHHHHHHHHHHHEEEEEEEEEEECTTSCHHHHHHHHHS
T ss_pred             EEECCchhhccccc---HHHHHHHHHHHHHhcCcCcEEEEEEcCCCChHHHHHHhhc
Confidence            99987654421100   0112469999999999999999988653 45555555553

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.44  E-value=4.1e-13  Score=112.44  Aligned_cols=108  Identities=17%  Similarity=0.250  Sum_probs=82.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.   ..++|+|+|+.+++.|++++...      + .++.++.+|+.. ++  + ++++|.
T Consensus        34 ~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~~~------~-~~~~~~~~d~~~-~~--~-~~~fD~   99 (243)
T 3d2l_A           34 GKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAMET------N-RHVDFWVQDMRE-LE--L-PEPVDA   99 (243)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHHHT------T-CCCEEEECCGGG-CC--C-SSCEEE
T ss_pred             CCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhhhc------C-CceEEEEcChhh-cC--C-CCCcCE
Confidence            358999999999999999987   68999999999999998876542      2 579999999864 43  3 378999


Q ss_pred             EEEeC-CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          146 MFFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       146 i~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      |++.+ .-.+....     -....+++++.++|+|||.+++.+.+...
T Consensus       100 v~~~~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~~~~~  142 (243)
T 3d2l_A          100 ITILCDSLNYLQTE-----ADVKQTFDSAARLLTDGGKLLFDVHSPYK  142 (243)
T ss_dssp             EEECTTGGGGCCSH-----HHHHHHHHHHHHHEEEEEEEEEEEECHHH
T ss_pred             EEEeCCchhhcCCH-----HHHHHHHHHHHHhcCCCeEEEEEcCCHHH
Confidence            99865 22221100     01236899999999999999998876543

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.44  E-value=2.6e-13  Score=113.31  Aligned_cols=98  Identities=18%  Similarity=0.232  Sum_probs=79.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++...  ..++|+|+++.+++.|++++..      .+  |+.++.+|+...+   ..++++|.
T Consensus        71 ~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~------~~--~v~~~~~d~~~~~---~~~~~fD~  137 (231)
T 1vbf_A           71 GQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLSY------YN--NIKLILGDGTLGY---EEEKPYDR  137 (231)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT------CS--SEEEEESCGGGCC---GGGCCEEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHhh------cC--CeEEEECCccccc---ccCCCccE
Confidence            4589999999999999999995  7899999999999999876632      23  8999999986422   23578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |++..+-++              +..++.++|+|||.+++.+...
T Consensus       138 v~~~~~~~~--------------~~~~~~~~L~pgG~l~~~~~~~  168 (231)
T 1vbf_A          138 VVVWATAPT--------------LLCKPYEQLKEGGIMILPIGVG  168 (231)
T ss_dssp             EEESSBBSS--------------CCHHHHHTEEEEEEEEEEECSS
T ss_pred             EEECCcHHH--------------HHHHHHHHcCCCcEEEEEEcCC
Confidence            998765443              3357899999999999988654

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.44  E-value=2.8e-13  Score=115.62  Aligned_cols=97  Identities=15%  Similarity=0.234  Sum_probs=76.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++  ++..++|+|+|+.+++.|+.            ..|+.++.+|+.. ++  ++++++|.
T Consensus        35 ~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~------------~~~~~~~~~d~~~-~~--~~~~~fD~   97 (261)
T 3ege_A           35 GSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVV------------HPQVEWFTGYAEN-LA--LPDKSVDG   97 (261)
T ss_dssp             TCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCC------------CTTEEEECCCTTS-CC--SCTTCBSE
T ss_pred             CCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHh------------ccCCEEEECchhh-CC--CCCCCEeE
Confidence            45899999999999999998  57899999999998765432            2289999999863 54  66889999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++...-.+...        ...+++++.++|| ||.+++.+-
T Consensus        98 v~~~~~l~~~~~--------~~~~l~~~~~~Lk-gG~~~~~~~  131 (261)
T 3ege_A           98 VISILAIHHFSH--------LEKSFQEMQRIIR-DGTIVLLTF  131 (261)
T ss_dssp             EEEESCGGGCSS--------HHHHHHHHHHHBC-SSCEEEEEE
T ss_pred             EEEcchHhhccC--------HHHHHHHHHHHhC-CcEEEEEEc
Confidence            998765333211        1369999999999 997777664

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.44  E-value=1.1e-12  Score=120.88  Aligned_cols=138  Identities=19%  Similarity=0.235  Sum_probs=98.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|..+..+|...++ ..++|+|+++.+++.+++++...      +++|+.++++|+.. ++..++++.+|
T Consensus       260 g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~------g~~~v~~~~~D~~~-~~~~~~~~~fD  332 (450)
T 2yxl_A          260 GETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM------GIKIVKPLVKDARK-APEIIGEEVAD  332 (450)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCTTC-CSSSSCSSCEE
T ss_pred             cCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc------CCCcEEEEEcChhh-cchhhccCCCC
Confidence            458999999999999999999876 79999999999999999887664      77899999999874 43335557899


Q ss_pred             EEEEeCCCCcccc--cc--ccc-----c-----ccCHHHHHHHHHhhcCCcEEEEEeCc---hHHHHHHHHHHhcCCCcc
Q 025470          145 KMFFLFPDPHFKE--KN--HRR-----R-----VISPHLLDEYAYVLGVGGIIYTITDV---EELGDWMRSCLENHPMFE  207 (252)
Q Consensus       145 ~i~~~fpdP~~k~--~h--~kr-----r-----~~~~~~l~~~~~~LkpgG~l~~~td~---~~~~~~~~~~~~~~~~~~  207 (252)
                      .|+++.|.--...  ++  .+.     .     -.+..+++.+.++|||||.+++.|-.   .+.-+.+...+..++.|+
T Consensus       333 ~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~~~~ene~~v~~~l~~~~~~~  412 (450)
T 2yxl_A          333 KVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEFK  412 (450)
T ss_dssp             EEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCCCGGGTHHHHHHHHHHCSSCE
T ss_pred             EEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCCCE
Confidence            9999766421110  00  000     0     01257899999999999999987632   222223334455666665


Q ss_pred             ccc
Q 025470          208 ALT  210 (252)
Q Consensus       208 ~~~  210 (252)
                      .++
T Consensus       413 ~~~  415 (450)
T 2yxl_A          413 LVP  415 (450)
T ss_dssp             ECC
T ss_pred             Eee
Confidence            543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.44  E-value=1.9e-13  Score=114.30  Aligned_cols=100  Identities=15%  Similarity=0.212  Sum_probs=81.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC------CCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-----cccEEEEeCCccccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP------EVLMIGMELRDKVTEYVKERILALRVSNPGQ-----YQNISVVRTNSMKYI  134 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p------~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-----~~nv~~~~~da~~~l  134 (252)
                      ...|||||||+|.++..+++..+      ...++|+|+++.+++.|++++...      +     ..|+.++.+|+... 
T Consensus        85 ~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------~~~~~~~~~v~~~~~d~~~~-  157 (227)
T 1r18_A           85 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTD------DRSMLDSGQLLIVEGDGRKG-  157 (227)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHH------HHHHHHHTSEEEEESCGGGC-
T ss_pred             CCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhc------CccccCCCceEEEECCcccC-
Confidence            45899999999999999999754      268999999999999999887653      3     56899999998642 


Q ss_pred             CccCCC-CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          135 PNYFEK-GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       135 ~~~~~~-~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                         +++ +.+|.|++..+.++              +++.+.++|||||++++.+..
T Consensus       158 ---~~~~~~fD~I~~~~~~~~--------------~~~~~~~~LkpgG~lvi~~~~  196 (227)
T 1r18_A          158 ---YPPNAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPVGP  196 (227)
T ss_dssp             ---CGGGCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEESC
T ss_pred             ---CCcCCCccEEEECCchHH--------------HHHHHHHHhcCCCEEEEEEec
Confidence               333 78999998876544              457899999999999998753

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.44  E-value=2.6e-13  Score=107.91  Aligned_cols=95  Identities=17%  Similarity=0.253  Sum_probs=77.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++...  .++|+|+++.+++.|+++           .+|+.++.+| .   +  ++++++|.
T Consensus        18 ~~~vLDiG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~-----------~~~v~~~~~d-~---~--~~~~~~D~   78 (170)
T 3i9f_A           18 KGVIVDYGCGNGFYCKYLLEFAT--KLYCIDINVIALKEVKEK-----------FDSVITLSDP-K---E--IPDNSVDF   78 (170)
T ss_dssp             CEEEEEETCTTCTTHHHHHTTEE--EEEEECSCHHHHHHHHHH-----------CTTSEEESSG-G---G--SCTTCEEE
T ss_pred             CCeEEEECCCCCHHHHHHHhhcC--eEEEEeCCHHHHHHHHHh-----------CCCcEEEeCC-C---C--CCCCceEE
Confidence            45899999999999999999963  899999999999887654           3579999998 2   2  55789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |+++..-.+...        ...+++++.++|+|||.+++..
T Consensus        79 v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~~~~  112 (170)
T 3i9f_A           79 ILFANSFHDMDD--------KQHVISEVKRILKDDGRVIIID  112 (170)
T ss_dssp             EEEESCSTTCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEccchhcccC--------HHHHHHHHHHhcCCCCEEEEEE
Confidence            998765544321        1369999999999999999974

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.44  E-value=2.9e-13  Score=111.37  Aligned_cols=98  Identities=18%  Similarity=0.224  Sum_probs=78.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+     +. .++|+|+++.+++.|+++.           +++.++++|+.. ++  ++++++|
T Consensus        37 ~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----------~~~~~~~~d~~~-~~--~~~~~fD   97 (211)
T 2gs9_A           37 GESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----------PEATWVRAWGEA-LP--FPGESFD   97 (211)
T ss_dssp             CSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----------TTSEEECCCTTS-CC--SCSSCEE
T ss_pred             CCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----------CCcEEEEccccc-CC--CCCCcEE
Confidence            458999999999998887     44 8999999999998876532           578999999863 44  6678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      .|+++..-.+...        ...+++++.++|||||.+++.+.+.
T Consensus        98 ~v~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~~~  135 (211)
T 2gs9_A           98 VVLLFTTLEFVED--------VERVLLEARRVLRPGGALVVGVLEA  135 (211)
T ss_dssp             EEEEESCTTTCSC--------HHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred             EEEEcChhhhcCC--------HHHHHHHHHHHcCCCCEEEEEecCC
Confidence            9998765444321        1369999999999999999987554

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.43  E-value=2.7e-13  Score=114.97  Aligned_cols=118  Identities=14%  Similarity=0.101  Sum_probs=81.1

Q ss_pred             CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc---------------------
Q 025470           66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN---------------------  122 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n---------------------  122 (252)
                      ...|||+|||+|.+++.++..  .+..+++|+|+|+.+++.|+.++.....   .++.+                     
T Consensus        52 ~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  128 (250)
T 1o9g_A           52 PVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSP---AGLTARELERREQSERFGKPSYLEAA  128 (250)
T ss_dssp             CEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSH---HHHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhh---ccccccchhhhhhhhhcccccchhhh
Confidence            458999999999999999998  7778999999999999999877643100   01211                     


Q ss_pred             -----EE-------------EEeCCcccccCcc-C-CCCcccEEEEeCCCCcccccccc---ccccCHHHHHHHHHhhcC
Q 025470          123 -----IS-------------VVRTNSMKYIPNY-F-EKGQLTKMFFLFPDPHFKEKNHR---RRVISPHLLDEYAYVLGV  179 (252)
Q Consensus       123 -----v~-------------~~~~da~~~l~~~-~-~~~s~d~i~~~fpdP~~k~~h~k---rr~~~~~~l~~~~~~Lkp  179 (252)
                           +.             ++++|+...+... + ....+|.|+++.|  +....+..   ..-....+++++.++|+|
T Consensus       129 ~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp--~~~~~~~~~~~~~~~~~~~l~~~~~~Lkp  206 (250)
T 1o9g_A          129 QAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP--YGERTHWEGQVPGQPVAGLLRSLASALPA  206 (250)
T ss_dssp             HHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC--GGGSSSSSSCCCHHHHHHHHHHHHHHSCT
T ss_pred             hhhhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCC--eeccccccccccccHHHHHHHHHHHhcCC
Confidence                 56             9999976422100 0 3348999999854  21111100   011224699999999999


Q ss_pred             CcEEEEEeC
Q 025470          180 GGIIYTITD  188 (252)
Q Consensus       180 gG~l~~~td  188 (252)
                      ||.+++...
T Consensus       207 gG~l~~~~~  215 (250)
T 1o9g_A          207 HAVIAVTDR  215 (250)
T ss_dssp             TCEEEEEES
T ss_pred             CcEEEEeCc
Confidence            999999543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.43  E-value=3.1e-13  Score=107.01  Aligned_cols=120  Identities=12%  Similarity=0.024  Sum_probs=86.2

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-----cCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-----IPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-----l~~~~~  139 (252)
                      ...|||+|||+|.++..+++. .|+..++|+|+++ ++                ...++.++.+|+...     ++..++
T Consensus        23 ~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~----------------~~~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T 1ej0_A           23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MD----------------PIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CC----------------CCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cc----------------ccCcEEEEEcccccchhhhhhhccCC
Confidence            458999999999999999999 4778999999998 53                236799999998642     111155


Q ss_pred             CCcccEEEEeCCCCcccccccc---ccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHR---RRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~k---rr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      ++++|.|+++.+..|.......   ..-....+++++.++|+|||.+++.+........+.+.+..
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~~~~~  151 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRS  151 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHH
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCcHHHHHHHHHH
Confidence            6899999998776554321100   00011469999999999999999987655555555555554

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.43  E-value=1.1e-12  Score=118.20  Aligned_cols=119  Identities=18%  Similarity=0.069  Sum_probs=86.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.+++.+|...+...++|+|+++.|++.|+.++...      ++ +++.++++|+.+ ++  ++++++|
T Consensus       218 ~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~------gl~~~i~~~~~D~~~-~~--~~~~~fD  288 (373)
T 3tm4_A          218 GGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA------GVLDKIKFIQGDATQ-LS--QYVDSVD  288 (373)
T ss_dssp             SCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT------TCGGGCEEEECCGGG-GG--GTCSCEE
T ss_pred             CCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc------CCCCceEEEECChhh-CC--cccCCcC
Confidence            45899999999999999999977668999999999999999988664      55 689999999974 44  4467899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDW  195 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~  195 (252)
                      .|++|.|-...-.....-.-+...+++++.++|  ||.+++.+.+.+.+..
T Consensus       289 ~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~~~~~~~  337 (373)
T 3tm4_A          289 FAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTEKKAIEE  337 (373)
T ss_dssp             EEEEECCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESCHHHHHH
T ss_pred             EEEECCCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECCHHHHHH
Confidence            999987632110000001112357889999999  5655555655544443

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.43  E-value=6.6e-13  Score=113.59  Aligned_cols=107  Identities=13%  Similarity=0.133  Sum_probs=80.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHh------HHHHHHHHHHHHhhcCCCCc-ccEEEEeCC-cccccCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDK------VTEYVKERILALRVSNPGQY-QNISVVRTN-SMKYIPN  136 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~------~i~~a~~~~~~~~~~~~~~~-~nv~~~~~d-a~~~l~~  136 (252)
                      ...|||||||+|.++..+++.. |...++|+|+|+.      +++.|++++...      ++ +|+.++.+| ... ...
T Consensus        44 ~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~-~~~  116 (275)
T 3bkx_A           44 GEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG------PLGDRLTVHFNTNLSD-DLG  116 (275)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS------TTGGGEEEECSCCTTT-CCG
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc------CCCCceEEEECChhhh-ccC
Confidence            4589999999999999999995 7789999999997      899988876432      44 689999998 321 112


Q ss_pred             cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          137 YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       137 ~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++++++|.|+++..-.+...        ...+++.+.++++|||.+++.+
T Consensus       117 ~~~~~~fD~v~~~~~l~~~~~--------~~~~~~~~~~l~~~gG~l~~~~  159 (275)
T 3bkx_A          117 PIADQHFDRVVLAHSLWYFAS--------ANALALLFKNMAAVCDHVDVAE  159 (275)
T ss_dssp             GGTTCCCSEEEEESCGGGSSC--------HHHHHHHHHHHTTTCSEEEEEE
T ss_pred             CCCCCCEEEEEEccchhhCCC--------HHHHHHHHHHHhCCCCEEEEEE
Confidence            256789999998754322211        1247777777777899999975

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.42  E-value=5.1e-13  Score=107.64  Aligned_cols=118  Identities=15%  Similarity=0.080  Sum_probs=85.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+++.+++.|+++           .+++.++.+|+.. ++  ++++++|.
T Consensus        47 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~-----------~~~~~~~~~d~~~-~~--~~~~~~D~  110 (195)
T 3cgg_A           47 GAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQD-----------FPEARWVVGDLSV-DQ--ISETDFDL  110 (195)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHH-----------CTTSEEEECCTTT-SC--CCCCCEEE
T ss_pred             CCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHh-----------CCCCcEEEccccc-CC--CCCCceeE
Confidence            458999999999999999998  56899999999999887753           2468999999864 33  55788999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH--HHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE--LGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~--~~~~~~~~~~~~~  204 (252)
                      |+++.+.-+....     -....+++.+.++|+|||.+++.+....  -...+.+.+...+
T Consensus       111 i~~~~~~~~~~~~-----~~~~~~l~~~~~~l~~~G~l~~~~~~~~~~~~~~~~~~l~~~G  166 (195)
T 3cgg_A          111 IVSAGNVMGFLAE-----DGREPALANIHRALGADGRAVIGFGAGRGWVFGDFLEVAERVG  166 (195)
T ss_dssp             EEECCCCGGGSCH-----HHHHHHHHHHHHHEEEEEEEEEEEETTSSCCHHHHHHHHHHHT
T ss_pred             EEECCcHHhhcCh-----HHHHHHHHHHHHHhCCCCEEEEEeCCCCCcCHHHHHHHHHHcC
Confidence            9986432211100     0114699999999999999999765432  2344455555443

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.42  E-value=6.1e-13  Score=109.91  Aligned_cols=153  Identities=13%  Similarity=0.023  Sum_probs=97.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.  +..++|+|+++.+++.|+++            .++.++.+|+....... .+..++|
T Consensus        53 ~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~------------~~~~~~~~~~~~~~~~~~~~~~~fD  118 (227)
T 3e8s_A           53 PERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA------------GAGEVHLASYAQLAEAKVPVGKDYD  118 (227)
T ss_dssp             CSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT------------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh------------cccccchhhHHhhcccccccCCCcc
Confidence            358999999999999999998  66899999999999877642            46778888886432212 2345599


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccccccccccc--CccccC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEA--DPVVKL  222 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~~~~  222 (252)
                      .|+++..-.+.         ....+++++.++|+|||.+++.+.+.......  .+  ...+..........  .+....
T Consensus       119 ~v~~~~~l~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~  185 (227)
T 3e8s_A          119 LICANFALLHQ---------DIIELLSAMRTLLVPGGALVIQTLHPWSVADG--DY--QDGWREESFAGFAGDWQPMPWY  185 (227)
T ss_dssp             EEEEESCCCSS---------CCHHHHHHHHHTEEEEEEEEEEECCTTTTCTT--CC--SCEEEEECCTTSSSCCCCEEEE
T ss_pred             EEEECchhhhh---------hHHHHHHHHHHHhCCCeEEEEEecCccccCcc--cc--ccccchhhhhccccCcccceEE
Confidence            99987643311         12369999999999999999988654221000  00  00010000000000  011111


Q ss_pred             CCCCCHHHHHHHHcCCCeEEEEE
Q 025470          223 LSSATEEGQKVARNGGQTFQAVF  245 (252)
Q Consensus       223 ~~~~t~~e~~~~~~G~~i~~~~~  245 (252)
                      ..+..++.....+.|..+-.+.-
T Consensus       186 ~~~~~~~~~~l~~aGf~~~~~~~  208 (227)
T 3e8s_A          186 FRTLASWLNALDMAGLRLVSLQE  208 (227)
T ss_dssp             ECCHHHHHHHHHHTTEEEEEEEC
T ss_pred             EecHHHHHHHHHHcCCeEEEEec
Confidence            23556788888899988766543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.42  E-value=4.6e-12  Score=103.90  Aligned_cols=117  Identities=14%  Similarity=0.079  Sum_probs=88.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.++..+++.. ...++|+|+++.+++.|++++...      ++ ++.++++|+.. ++     +++|.
T Consensus        50 ~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~~~------~~-~~~~~~~d~~~-~~-----~~~D~  115 (207)
T 1wy7_A           50 GKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEF------KG-KFKVFIGDVSE-FN-----SRVDI  115 (207)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGG------TT-SEEEEESCGGG-CC-----CCCSE
T ss_pred             cCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHHHc------CC-CEEEEECchHH-cC-----CCCCE
Confidence            4589999999999999999884 347999999999999998876432      44 89999999874 32     48999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |+++.|--+.      ++-....+++.+.++|  ||.+.+.++.....+.+.+.+...+
T Consensus       116 v~~~~p~~~~------~~~~~~~~l~~~~~~l--~~~~~~~~~~~~~~~~~~~~l~~~g  166 (207)
T 1wy7_A          116 VIMNPPFGSQ------RKHADRPFLLKAFEIS--DVVYSIHLAKPEVRRFIEKFSWEHG  166 (207)
T ss_dssp             EEECCCCSSS------STTTTHHHHHHHHHHC--SEEEEEEECCHHHHHHHHHHHHHTT
T ss_pred             EEEcCCCccc------cCCchHHHHHHHHHhc--CcEEEEEeCCcCCHHHHHHHHHHCC
Confidence            9998774332      1223457899999998  6666555556666777777776665

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.42  E-value=8.5e-13  Score=117.80  Aligned_cols=104  Identities=13%  Similarity=0.224  Sum_probs=79.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+. +...++|||+| ++++.|++++...      ++.+ +.++++|+.+ ++  ++++++|
T Consensus        67 ~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~~~~~fD  135 (349)
T 3q7e_A           67 DKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVKAN------KLDHVVTIIKGKVEE-VE--LPVEKVD  135 (349)
T ss_dssp             TCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHHHT------TCTTTEEEEESCTTT-CC--CSSSCEE
T ss_pred             CCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHHHc------CCCCcEEEEECcHHH-cc--CCCCceE
Confidence            458999999999999999998 56699999999 5999998877653      5544 9999999874 43  6678999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .|+.+........     .-....++..+.++|||||.+++
T Consensus       136 ~Iis~~~~~~l~~-----~~~~~~~l~~~~r~LkpgG~li~  171 (349)
T 3q7e_A          136 IIISEWMGYCLFY-----ESMLNTVLHARDKWLAPDGLIFP  171 (349)
T ss_dssp             EEEECCCBBTBTB-----TCCHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEEccccccccC-----chhHHHHHHHHHHhCCCCCEEcc
Confidence            9998643221100     01124689999999999999853

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.41  E-value=5.7e-13  Score=120.30  Aligned_cols=115  Identities=16%  Similarity=0.105  Sum_probs=86.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-CCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-EKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-~~~s~d  144 (252)
                      ...|||+|||+|.+++.+|..  ...++|+|+++.+++.|++++...      +++|+.++++|+.+.+.... ...++|
T Consensus       210 ~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~~n------~~~~~~~~~~d~~~~~~~~~~~~~~fD  281 (382)
T 1wxx_A          210 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLLRRLEKEGERFD  281 (382)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHHc------CCCCceEEECCHHHHHHHHHhcCCCee
Confidence            458999999999999999998  678999999999999999988653      77889999999976443211 146899


Q ss_pred             EEEEeCCCCccccccc--cccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLFPDPHFKEKNH--RRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~--krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|+++.|- +.+....  ...-....++..+.++|+|||.+++.+..
T Consensus       282 ~Ii~dpP~-~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~  327 (382)
T 1wxx_A          282 LVVLDPPA-FAKGKKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  327 (382)
T ss_dssp             EEEECCCC-SCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEECCCC-CCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            99987553 1111000  00011346899999999999999998865

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=99.41  E-value=1.2e-12  Score=119.93  Aligned_cols=137  Identities=15%  Similarity=0.161  Sum_probs=97.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|..+..+|+..++..++|+|+++.+++.+++++...      +. ++.++++|+.. ++..++++.+|.
T Consensus       247 g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~------g~-~~~~~~~D~~~-~~~~~~~~~fD~  318 (429)
T 1sqg_A          247 GEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL------GM-KATVKQGDGRY-PSQWCGEQQFDR  318 (429)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT------TC-CCEEEECCTTC-THHHHTTCCEEE
T ss_pred             cCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc------CC-CeEEEeCchhh-chhhcccCCCCE
Confidence            56899999999999999999988889999999999999999887654      44 47899999864 332345678999


Q ss_pred             EEEeCCCCccccc--cc--ccc----------ccCHHHHHHHHHhhcCCcEEEEEeC---chHHHHHHHHHHhcCCCccc
Q 025470          146 MFFLFPDPHFKEK--NH--RRR----------VISPHLLDEYAYVLGVGGIIYTITD---VEELGDWMRSCLENHPMFEA  208 (252)
Q Consensus       146 i~~~fpdP~~k~~--h~--krr----------~~~~~~l~~~~~~LkpgG~l~~~td---~~~~~~~~~~~~~~~~~~~~  208 (252)
                      |+++.|..-...-  +.  +.+          -.+..+++.+.++|||||++++.|-   ..+....+...+..++.|+.
T Consensus       319 Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~~~~ene~~v~~~l~~~~~~~~  398 (429)
T 1sqg_A          319 ILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAEL  398 (429)
T ss_dssp             EEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCEE
T ss_pred             EEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhHHHHHHHHHHhCCCCEE
Confidence            9998764321100  00  000          1235789999999999999999872   22223334445566766665


Q ss_pred             cc
Q 025470          209 LT  210 (252)
Q Consensus       209 ~~  210 (252)
                      ++
T Consensus       399 ~~  400 (429)
T 1sqg_A          399 CE  400 (429)
T ss_dssp             CS
T ss_pred             eC
Confidence            53

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.41  E-value=3.6e-13  Score=113.84  Aligned_cols=98  Identities=12%  Similarity=0.107  Sum_probs=76.4

Q ss_pred             CceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~  139 (252)
                      ...|||||||+|.++..+|+.    .|+..++|||+++.+++.|+.           ..+||.++++|+.+.  ++ .+.
T Consensus        82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-----------~~~~v~~~~gD~~~~~~l~-~~~  149 (236)
T 2bm8_A           82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-----------DMENITLHQGDCSDLTTFE-HLR  149 (236)
T ss_dssp             CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-----------GCTTEEEEECCSSCSGGGG-GGS
T ss_pred             CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-----------cCCceEEEECcchhHHHHH-hhc
Confidence            348999999999999999998    788999999999998876541           126899999998742  22 233


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHH-hhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAY-VLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~-~LkpgG~l~~~  186 (252)
                      ..++|.|++....       .    ....++.++.+ +|||||.|++.
T Consensus       150 ~~~fD~I~~d~~~-------~----~~~~~l~~~~r~~LkpGG~lv~~  186 (236)
T 2bm8_A          150 EMAHPLIFIDNAH-------A----NTFNIMKWAVDHLLEEGDYFIIE  186 (236)
T ss_dssp             SSCSSEEEEESSC-------S----SHHHHHHHHHHHTCCTTCEEEEC
T ss_pred             cCCCCEEEECCch-------H----hHHHHHHHHHHhhCCCCCEEEEE
Confidence            4479999986541       1    12468999997 99999999984

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.40  E-value=1.1e-12  Score=110.08  Aligned_cols=117  Identities=17%  Similarity=0.082  Sum_probs=90.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCC-cc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKG-QL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~-s~  143 (252)
                      +..|||||||+|.+++.+|+..|...++|+|+++.+++.|++++...      ++. +|.+..+|+.+.++    ++ .+
T Consensus        16 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~------gl~~~i~~~~~d~l~~l~----~~~~~   85 (225)
T 3kr9_A           16 GAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAH------GLKEKIQVRLANGLAAFE----ETDQV   85 (225)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------TCTTTEEEEECSGGGGCC----GGGCC
T ss_pred             CCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEECchhhhcc----cCcCC
Confidence            46899999999999999999998889999999999999999998764      665 59999999864333    33 69


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |.|++.--.         .. +-..++......|+++|.|+++...  -...+.+.+.+++
T Consensus        86 D~IviaG~G---------g~-~i~~Il~~~~~~L~~~~~lVlq~~~--~~~~vr~~L~~~G  134 (225)
T 3kr9_A           86 SVITIAGMG---------GR-LIARILEEGLGKLANVERLILQPNN--REDDLRIWLQDHG  134 (225)
T ss_dssp             CEEEEEEEC---------HH-HHHHHHHHTGGGCTTCCEEEEEESS--CHHHHHHHHHHTT
T ss_pred             CEEEEcCCC---------hH-HHHHHHHHHHHHhCCCCEEEEECCC--CHHHHHHHHHHCC
Confidence            988863110         00 1235888999999999999997753  3445556666664

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.40  E-value=5.1e-13  Score=118.84  Aligned_cols=120  Identities=17%  Similarity=0.194  Sum_probs=89.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|...++|+|+|+.+++.|++++...      +. ++.++.+|+..     +.++++|.
T Consensus       197 ~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~------~~-~~~~~~~d~~~-----~~~~~fD~  264 (343)
T 2pjd_A          197 KGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAAN------GV-EGEVFASNVFS-----EVKGRFDM  264 (343)
T ss_dssp             CSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHT------TC-CCEEEECSTTT-----TCCSCEEE
T ss_pred             CCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh------CC-CCEEEEccccc-----cccCCeeE
Confidence            34899999999999999999999889999999999999999887553      33 36778888753     22678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCL  200 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~  200 (252)
                      |+++.|-.+....+.   -....+++++.++|+|||.+++.+.. ..|...+...+
T Consensus       265 Iv~~~~~~~g~~~~~---~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~l~~~f  317 (343)
T 2pjd_A          265 IISNPPFHDGMQTSL---DAAQTLIRGAVRHLNSGGELRIVANAFLPYPDVLDETF  317 (343)
T ss_dssp             EEECCCCCSSSHHHH---HHHHHHHHHHGGGEEEEEEEEEEEETTSSHHHHHHHHH
T ss_pred             EEECCCcccCccCCH---HHHHHHHHHHHHhCCCCcEEEEEEcCCCCcHHHHHHhc
Confidence            999876543111010   11246999999999999999998754 33444444444

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.40  E-value=4.8e-13  Score=109.24  Aligned_cols=119  Identities=11%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC--CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC--------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP--EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP--------  135 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p--~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~--------  135 (252)
                      ...|||||||+|.++..++++.|  ...++|+|+++.+                 ..+++.++++|+.. +.        
T Consensus        23 ~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------------~~~~v~~~~~d~~~-~~~~~~~~~~   84 (201)
T 2plw_A           23 NKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------------PIPNVYFIQGEIGK-DNMNNIKNIN   84 (201)
T ss_dssp             TEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------------CCTTCEEEECCTTT-TSSCCC----
T ss_pred             CCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------------CCCCceEEEccccc-hhhhhhcccc
Confidence            45899999999999999999987  6899999999831                 24579999999864 22        


Q ss_pred             ---------------ccCCCCcccEEEEeCCCCcccc---ccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025470          136 ---------------NYFEKGQLTKMFFLFPDPHFKE---KNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR  197 (252)
Q Consensus       136 ---------------~~~~~~s~d~i~~~fpdP~~k~---~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~  197 (252)
                                     ..+++.++|.|+.+++-+|...   .+....-....+++++.++|||||.|++.+-..+....+.
T Consensus        85 ~i~~~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~~~~l~  164 (201)
T 2plw_A           85 YIDNMNNNSVDYKLKEILQDKKIDIILSDAAVPCIGNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGSQTNNLK  164 (201)
T ss_dssp             -------CHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTTHHHHH
T ss_pred             ccccccchhhHHHHHhhcCCCcccEEEeCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCCCHHHHH
Confidence                           0145678999998876555211   1111001123478999999999999998664333333444


Q ss_pred             HHHhc
Q 025470          198 SCLEN  202 (252)
Q Consensus       198 ~~~~~  202 (252)
                      ..+..
T Consensus       165 ~~l~~  169 (201)
T 2plw_A          165 TYLKG  169 (201)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            45543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.40  E-value=1.6e-12  Score=112.35  Aligned_cols=109  Identities=12%  Similarity=0.172  Sum_probs=82.2

Q ss_pred             ceEEEEcCcc---cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc---C-----
Q 025470           67 IQFADIGCGF---GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI---P-----  135 (252)
Q Consensus        67 ~~vLDIGcG~---G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l---~-----  135 (252)
                      ..|||||||+   |.++..+++..|+..++|+|+|+.|++.|++++.        ..+++.++.+|+.+.-   .     
T Consensus        79 ~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~--------~~~~v~~~~~D~~~~~~~~~~~~~~  150 (274)
T 2qe6_A           79 SQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA--------KDPNTAVFTADVRDPEYILNHPDVR  150 (274)
T ss_dssp             CEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT--------TCTTEEEEECCTTCHHHHHHSHHHH
T ss_pred             CEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC--------CCCCeEEEEeeCCCchhhhccchhh
Confidence            5899999999   9988888888899999999999999999987652        2468999999986310   0     


Q ss_pred             ccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          136 NYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       136 ~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      ..++..++|.|+++..-.|....      ....+|++++++|+|||.|++..-.
T Consensus       151 ~~~d~~~~d~v~~~~vlh~~~d~------~~~~~l~~~~~~L~pGG~l~i~~~~  198 (274)
T 2qe6_A          151 RMIDFSRPAAIMLVGMLHYLSPD------VVDRVVGAYRDALAPGSYLFMTSLV  198 (274)
T ss_dssp             HHCCTTSCCEEEETTTGGGSCTT------THHHHHHHHHHHSCTTCEEEEEEEB
T ss_pred             ccCCCCCCEEEEEechhhhCCcH------HHHHHHHHHHHhCCCCcEEEEEEec
Confidence            12444588999876533332110      0136999999999999999987643

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.40  E-value=4e-13  Score=121.56  Aligned_cols=118  Identities=10%  Similarity=0.030  Sum_probs=85.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc--cEEEEeCCcccccCccC-CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ--NISVVRTNSMKYIPNYF-EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~~~~da~~~l~~~~-~~~s  142 (252)
                      ...|||+|||+|.+++.+|... ...++|||+|+.+++.|++++...      ++.  |+.++++|+.+.++... ....
T Consensus       213 ~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~~n------~~~~~~v~~~~~D~~~~l~~~~~~~~~  285 (385)
T 2b78_A          213 GKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEAN------HLDMANHQLVVMDVFDYFKYARRHHLT  285 (385)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHT------TCCCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             CCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECCHHHHHHHHHHhCCC
Confidence            4589999999999999999863 348999999999999999988653      665  89999999976554221 1358


Q ss_pred             ccEEEEeCCCCcccccc-ccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          143 LTKMFFLFPDPHFKEKN-HRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h-~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      +|.|+++.|---..+.. ..-.-....++..+.++|+|||.|++.+...
T Consensus       286 fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~  334 (385)
T 2b78_A          286 YDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA  334 (385)
T ss_dssp             EEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             ccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            99999876531100001 0000012347788899999999999998754

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.40  E-value=8.8e-13  Score=120.71  Aligned_cols=105  Identities=17%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHH-------HHHHHHHhhcCCCC--cccEEEEeCCcccccCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYV-------KERILALRVSNPGQ--YQNISVVRTNSMKYIPN  136 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a-------~~~~~~~~~~~~~~--~~nv~~~~~da~~~l~~  136 (252)
                      ...|||||||+|.+++.+|+..+...++|||+++.+++.|       +.++..      .+  ..|+.++++|.... ..
T Consensus       243 g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~------~Gl~~~nV~~i~gD~~~~-~~  315 (433)
T 1u2z_A          243 GDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKL------YGMRLNNVEFSLKKSFVD-NN  315 (433)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHH------TTBCCCCEEEEESSCSTT-CH
T ss_pred             CCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHH------cCCCCCceEEEEcCcccc-cc
Confidence            5589999999999999999987777899999999999988       555543      25  57999999875421 10


Q ss_pred             cC--CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          137 YF--EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       137 ~~--~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+  ..+++|.|+++..- +...        ....|+++.++|||||.|++.
T Consensus       316 ~~~~~~~~FDvIvvn~~l-~~~d--------~~~~L~el~r~LKpGG~lVi~  358 (433)
T 1u2z_A          316 RVAELIPQCDVILVNNFL-FDED--------LNKKVEKILQTAKVGCKIISL  358 (433)
T ss_dssp             HHHHHGGGCSEEEECCTT-CCHH--------HHHHHHHHHTTCCTTCEEEES
T ss_pred             ccccccCCCCEEEEeCcc-cccc--------HHHHHHHHHHhCCCCeEEEEe
Confidence            11  24689999986322 1110        124789999999999999885

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.40  E-value=1.2e-12  Score=117.21  Aligned_cols=106  Identities=15%  Similarity=0.116  Sum_probs=81.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++|+|+ +.+++.|++++..      .++ ++|.++.+|+.. ....++ +++|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~------~~~~~~v~~~~~d~~~-~~~~~p-~~~D  250 (363)
T 3dp7_A          180 PKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG------LSGSERIHGHGANLLD-RDVPFP-TGFD  250 (363)
T ss_dssp             CSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT------CTTGGGEEEEECCCCS-SSCCCC-CCCS
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh------cCcccceEEEEccccc-cCCCCC-CCcC
Confidence            45899999999999999999999999999999 9999998876633      243 689999999863 110133 7899


Q ss_pred             EEEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-. |....       ...+|+++.++|+|||+|++..
T Consensus       251 ~v~~~~vlh~~~~~~-------~~~~l~~~~~~L~pgG~l~i~e  287 (363)
T 3dp7_A          251 AVWMSQFLDCFSEEE-------VISILTRVAQSIGKDSKVYIME  287 (363)
T ss_dssp             EEEEESCSTTSCHHH-------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEEEechhhhCCHHH-------HHHHHHHHHHhcCCCcEEEEEe
Confidence            999865322 22110       1258999999999999998864

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.40  E-value=1.1e-12  Score=118.98  Aligned_cols=118  Identities=11%  Similarity=0.057  Sum_probs=87.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-c-cEEEEeCCcccccCccC-CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-Q-NISVVRTNSMKYIPNYF-EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~-nv~~~~~da~~~l~~~~-~~~s  142 (252)
                      ...|||+|||+|.+++.+|... ...++|+|+++.+++.|++++...      ++ + |+.++++|+.+.+.... ....
T Consensus       221 ~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~~n------gl~~~~v~~~~~D~~~~~~~~~~~~~~  293 (396)
T 3c0k_A          221 NKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVELN------KLDLSKAEFVRDDVFKLLRTYRDRGEK  293 (396)
T ss_dssp             TCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT------TCCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             CCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECCHHHHHHHHHhcCCC
Confidence            4589999999999999999974 458999999999999999988653      66 5 89999999976443211 1358


Q ss_pred             ccEEEEeCCCCccccccc-cccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          143 LTKMFFLFPDPHFKEKNH-RRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~-krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      +|.|+++.|--...+.+. ...-....++..+.+.|+|||.+++.+...
T Consensus       294 fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~  342 (396)
T 3c0k_A          294 FDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG  342 (396)
T ss_dssp             EEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred             CCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence            999999765311111110 000123468899999999999999988753

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.40  E-value=1.3e-12  Score=111.34  Aligned_cols=101  Identities=19%  Similarity=0.242  Sum_probs=78.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|+++.         . .+  ++.+|+.. ++  ++++++|.
T Consensus        55 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~---------~-~~--~~~~d~~~-~~--~~~~~fD~  117 (260)
T 2avn_A           55 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG---------V-KN--VVEAKAED-LP--FPSGAFEA  117 (260)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT---------C-SC--EEECCTTS-CC--SCTTCEEE
T ss_pred             CCeEEEeCCCcCHHHHHHHHc--CCeEEEEeCCHHHHHHHHhhc---------C-CC--EEECcHHH-CC--CCCCCEEE
Confidence            458999999999999999998  568999999999999887642         1 23  78888863 44  66789999


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      |++...- .+...        ...+++++.++|||||.+++.+.+..
T Consensus       118 v~~~~~~~~~~~~--------~~~~l~~~~~~LkpgG~l~~~~~~~~  156 (260)
T 2avn_A          118 VLALGDVLSYVEN--------KDKAFSEIRRVLVPDGLLIATVDNFY  156 (260)
T ss_dssp             EEECSSHHHHCSC--------HHHHHHHHHHHEEEEEEEEEEEEBHH
T ss_pred             EEEcchhhhcccc--------HHHHHHHHHHHcCCCeEEEEEeCChH
Confidence            9875421 11010        13699999999999999999887754

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.39  E-value=4.7e-13  Score=113.99  Aligned_cols=100  Identities=16%  Similarity=0.257  Sum_probs=77.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..  ..++|+|+|+.+++.|++++           .++.++.+|+.. ++  + ++++|.
T Consensus        51 ~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~-----------~~~~~~~~d~~~-~~--~-~~~fD~  113 (263)
T 3pfg_A           51 AASLLDVACGTGMHLRHLADSF--GTVEGLELSADMLAIARRRN-----------PDAVLHHGDMRD-FS--L-GRRFSA  113 (263)
T ss_dssp             CCEEEEETCTTSHHHHHHTTTS--SEEEEEESCHHHHHHHHHHC-----------TTSEEEECCTTT-CC--C-SCCEEE
T ss_pred             CCcEEEeCCcCCHHHHHHHHcC--CeEEEEECCHHHHHHHHhhC-----------CCCEEEECChHH-CC--c-cCCcCE
Confidence            3589999999999999999984  58999999999998887642           379999999864 43  2 689999


Q ss_pred             EEEeC-CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++.+ .-.+.....     ....+++++.++|||||.|++.+
T Consensus       114 v~~~~~~l~~~~~~~-----~~~~~l~~~~~~L~pgG~l~i~~  151 (263)
T 3pfg_A          114 VTCMFSSIGHLAGQA-----ELDAALERFAAHVLPDGVVVVEP  151 (263)
T ss_dssp             EEECTTGGGGSCHHH-----HHHHHHHHHHHTEEEEEEEEECC
T ss_pred             EEEcCchhhhcCCHH-----HHHHHHHHHHHhcCCCcEEEEEe
Confidence            99876 433321100     11358999999999999999953

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.39  E-value=1.7e-12  Score=114.60  Aligned_cols=104  Identities=19%  Similarity=0.172  Sum_probs=81.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++++|+ +.+++.|++++...      ++ ++|.++.+|+.+    .++. .+|
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~----~~p~-~~D  237 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT------GLSGRAQVVVGSFFD----PLPA-GAG  237 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT------TCTTTEEEEECCTTS----CCCC-SCS
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc------CcCcCeEEecCCCCC----CCCC-CCc
Confidence            35899999999999999999999999999999 99999998877553      43 689999999752    2333 799


Q ss_pred             EEEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++...-. |+..       ....++++++++|+|||+|++...
T Consensus       238 ~v~~~~vlh~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e~  275 (332)
T 3i53_A          238 GYVLSAVLHDWDDL-------SAVAILRRCAEAAGSGGVVLVIEA  275 (332)
T ss_dssp             EEEEESCGGGSCHH-------HHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred             EEEEehhhccCCHH-------HHHHHHHHHHHhcCCCCEEEEEee
Confidence            999754321 1110       013699999999999999998653

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.39  E-value=1.5e-12  Score=115.74  Aligned_cols=108  Identities=15%  Similarity=0.163  Sum_probs=85.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|.+++. |+  ....++|+|+++.+++.|++++...      ++ +|+.++++|+.+.+      +.+|
T Consensus       196 ~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~~n------~l~~~v~~~~~D~~~~~------~~fD  260 (336)
T 2yx1_A          196 NDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIKLN------KLEHKIIPILSDVREVD------VKGN  260 (336)
T ss_dssp             TCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCGGGCC------CCEE
T ss_pred             CCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECChHHhc------CCCc
Confidence            56899999999999999 87  4779999999999999999988664      55 58999999987532      6899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      .|+++.|.-.            ..++..+.++|+|||.+++.+.... .....+.+.
T Consensus       261 ~Vi~dpP~~~------------~~~l~~~~~~L~~gG~l~~~~~~~~-~~~~~~~l~  304 (336)
T 2yx1_A          261 RVIMNLPKFA------------HKFIDKALDIVEEGGVIHYYTIGKD-FDKAIKLFE  304 (336)
T ss_dssp             EEEECCTTTG------------GGGHHHHHHHEEEEEEEEEEEEESS-SHHHHHHHH
T ss_pred             EEEECCcHhH------------HHHHHHHHHHcCCCCEEEEEEeecC-chHHHHHHH
Confidence            9998654211            1599999999999999998765544 444444444

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.39  E-value=4.5e-13  Score=109.29  Aligned_cols=100  Identities=15%  Similarity=0.226  Sum_probs=77.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.+++.++...|+..|+|+|+|+.|++.|++++...      +.. |+++  +|....    .+++.+|
T Consensus        50 ~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~------g~~~~v~~--~d~~~~----~~~~~~D  117 (200)
T 3fzg_A           50 VSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL------KTTIKYRF--LNKESD----VYKGTYD  117 (200)
T ss_dssp             CSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS------CCSSEEEE--ECCHHH----HTTSEEE
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc------CCCccEEE--eccccc----CCCCCcC
Confidence            34899999999999999999999999999999999999999988664      666 7877  554421    4578899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .|.++---|....+        ...+..+.+.|+|||.|+-
T Consensus       118 vVLa~k~LHlL~~~--------~~al~~v~~~L~pggvfIS  150 (200)
T 3fzg_A          118 VVFLLKMLPVLKQQ--------DVNILDFLQLFHTQNFVIS  150 (200)
T ss_dssp             EEEEETCHHHHHHT--------TCCHHHHHHTCEEEEEEEE
T ss_pred             hhhHhhHHHhhhhh--------HHHHHHHHHHhCCCCEEEE
Confidence            99986433332111        1245589999999998764

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.38  E-value=9.7e-13  Score=116.77  Aligned_cols=114  Identities=12%  Similarity=0.050  Sum_probs=82.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccccCccC-CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKYIPNYF-EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~l~~~~-~~~s  142 (252)
                      ...|||+|||+|.+++.+|...  ..++|||+|+.+++.|++++...      ++.+  +.++++|+.+.+.... ....
T Consensus       154 ~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~------gl~~~~v~~i~~D~~~~l~~~~~~~~~  225 (332)
T 2igt_A          154 PLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLA------GLEQAPIRWICEDAMKFIQREERRGST  225 (332)
T ss_dssp             CCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHH------TCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred             CCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHc------CCCccceEEEECcHHHHHHHHHhcCCC
Confidence            3589999999999999999974  48999999999999999988765      5554  9999999976443111 1468


Q ss_pred             ccEEEEeCCCCccc-ccc-ccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDPHFK-EKN-HRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k-~~h-~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|+++.|---.. +.. ....-....+++.+.++|+|||.|++.+
T Consensus       226 fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~  272 (332)
T 2igt_A          226 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  272 (332)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             ceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEE
Confidence            99999976521100 000 0000012468999999999999977755

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=99.38  E-value=1.8e-12  Score=119.71  Aligned_cols=113  Identities=15%  Similarity=0.161  Sum_probs=86.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|..+..+|+..++ ..++|+|+++.+++.+++++...      ++. +.++++|+.. +... .++++|
T Consensus       102 g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~------G~~-v~~~~~Da~~-l~~~-~~~~FD  172 (464)
T 3m6w_A          102 GERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW------GAP-LAVTQAPPRA-LAEA-FGTYFH  172 (464)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------CCC-CEEECSCHHH-HHHH-HCSCEE
T ss_pred             CCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCe-EEEEECCHHH-hhhh-ccccCC
Confidence            568999999999999999998764 68999999999999999988775      777 9999999874 3321 257899


Q ss_pred             EEEEeCCC---------Ccccccccccc-----ccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPD---------PHFKEKNHRRR-----VISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpd---------P~~k~~h~krr-----~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++-|.         |-.+.......     -.+..+++.+.++|||||+|+++|
T Consensus       173 ~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysT  229 (464)
T 3m6w_A          173 RVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYST  229 (464)
T ss_dssp             EEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             EEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEe
Confidence            99998764         21110000000     123679999999999999999865

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.38  E-value=2e-12  Score=117.16  Aligned_cols=118  Identities=14%  Similarity=0.064  Sum_probs=86.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccC-CCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYF-EKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~-~~~s~  143 (252)
                      ...|||+|||+|.+++.+|.. +...++|+|+++.+++.|++++...      ++. |+.++++|+.+.++... ....+
T Consensus       218 ~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~~n------~~~~~v~~~~~d~~~~~~~~~~~~~~f  290 (396)
T 2as0_A          218 GDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAKLN------GVEDRMKFIVGSAFEEMEKLQKKGEKF  290 (396)
T ss_dssp             TCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             CCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHc------CCCccceEEECCHHHHHHHHHhhCCCC
Confidence            458999999999999999987 3458999999999999999988653      666 89999999976443211 24689


Q ss_pred             cEEEEeCCCCccccccc-cccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          144 TKMFFLFPDPHFKEKNH-RRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~-krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |.|+++.|--.....+. ...-....++..+.++|+|||.+++.+.+.
T Consensus       291 D~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~  338 (396)
T 2as0_A          291 DIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ  338 (396)
T ss_dssp             EEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence            99999755311110000 000113468899999999999999987653

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.37  E-value=4.6e-12  Score=117.58  Aligned_cols=115  Identities=13%  Similarity=0.135  Sum_probs=87.7

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...|||+|||+|..+..+|+..+ ...++|+|+++.+++.+++++...      ++.|+.++++|+.. +.. ..++++
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~------g~~nv~~~~~D~~~-~~~-~~~~~f  188 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC------GISNVALTHFDGRV-FGA-AVPEMF  188 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCCSTT-HHH-HSTTCE
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc------CCCcEEEEeCCHHH-hhh-hccccC
Confidence            356899999999999999999864 578999999999999999988765      77899999999874 331 135789


Q ss_pred             cEEEEeCCCCc----ccccccccc----------ccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPH----FKEKNHRRR----------VISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~----~k~~h~krr----------~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+++-|.--    .+....+.+          -.+..+|+.+.++|||||+|++.|
T Consensus       189 D~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysT  246 (479)
T 2frx_A          189 DAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYST  246 (479)
T ss_dssp             EEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEec
Confidence            99999866321    000000000          124578999999999999999976

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=99.37  E-value=1.1e-12  Score=112.73  Aligned_cols=113  Identities=10%  Similarity=-0.027  Sum_probs=86.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++. + ..++++|+++.+++.|++++.....  ....+++.++.+|+.+.+      +++|.|
T Consensus        74 ~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~--~~~~~rv~~~~~D~~~~~------~~fD~I  143 (262)
T 2cmg_A           74 KEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHE--VKNNKNFTHAKQLLDLDI------KKYDLI  143 (262)
T ss_dssp             CEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHH--HHTCTTEEEESSGGGSCC------CCEEEE
T ss_pred             CEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhcc--ccCCCeEEEEechHHHHH------hhCCEE
Confidence            48999999999999999988 7 8999999999999988765421100  002357999999987422      789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~  202 (252)
                      ++..++|+             .+++.+.++|+|||.+++.+.+.    .....+.+.+..
T Consensus       144 i~d~~dp~-------------~~~~~~~~~L~pgG~lv~~~~~~~~~~~~~~~~~~~l~~  190 (262)
T 2cmg_A          144 FCLQEPDI-------------HRIDGLKRMLKEDGVFISVAKHPLLEHVSMQNALKNMGG  190 (262)
T ss_dssp             EESSCCCH-------------HHHHHHHTTEEEEEEEEEEEECTTTCHHHHHHHHHHHHT
T ss_pred             EECCCChH-------------HHHHHHHHhcCCCcEEEEEcCCcccCHHHHHHHHHHHHH
Confidence            99988876             39999999999999999976442    344445555543

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.37  E-value=1.2e-12  Score=120.62  Aligned_cols=114  Identities=18%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|..+..+|...+ ...++|+|+++.+++.+++++...      ++.|+.++++|+.. +...+ ++.+|
T Consensus       106 g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~------g~~nv~v~~~Da~~-l~~~~-~~~FD  177 (456)
T 3m4x_A          106 GEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW------GVSNAIVTNHAPAE-LVPHF-SGFFD  177 (456)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH------TCSSEEEECCCHHH-HHHHH-TTCEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEeCCHHH-hhhhc-cccCC
Confidence            56899999999999999999855 468999999999999999998776      78899999999874 33222 57899


Q ss_pred             EEEEeCCCCc----cccccccc----------cccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPH----FKEKNHRR----------RVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~----~k~~h~kr----------r~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+++-|.--    .+....+.          .-.+..+|+.+.++|||||+|+++|
T Consensus       178 ~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsT  234 (456)
T 3m4x_A          178 RIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYST  234 (456)
T ss_dssp             EEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence            9999876211    00000000          0134478999999999999999866

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.36  E-value=4e-12  Score=106.97  Aligned_cols=118  Identities=14%  Similarity=0.075  Sum_probs=89.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||||||+|.+++.+|+..|...++|+|+++.+++.|++++...      ++. +|.+..+|+.+.+.   +.+.+|
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~------gl~~~I~~~~gD~l~~~~---~~~~~D   92 (230)
T 3lec_A           22 GARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEH------GLTSKIDVRLANGLSAFE---EADNID   92 (230)
T ss_dssp             TEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHT------TCTTTEEEEECSGGGGCC---GGGCCC
T ss_pred             CCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEECchhhccc---cccccC
Confidence            46899999999999999999988889999999999999999998764      665 59999999865332   233699


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      .|++---         ... +-..++......|+++|.|+++....  ...+.+.+.+++
T Consensus        93 ~IviaGm---------Gg~-lI~~IL~~~~~~l~~~~~lIlqp~~~--~~~lr~~L~~~G  140 (230)
T 3lec_A           93 TITICGM---------GGR-LIADILNNDIDKLQHVKTLVLQPNNR--EDDLRKWLAAND  140 (230)
T ss_dssp             EEEEEEE---------CHH-HHHHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHTT
T ss_pred             EEEEeCC---------chH-HHHHHHHHHHHHhCcCCEEEEECCCC--hHHHHHHHHHCC
Confidence            9875210         000 12357888888999999999987543  445556666654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.36  E-value=8.4e-12  Score=114.49  Aligned_cols=115  Identities=17%  Similarity=0.207  Sum_probs=89.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc-cCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN-YFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~-~~~~~s~d  144 (252)
                      ...|||+|||+|.+++.+|+.  ...++|+|+|+.+++.|++++...      +++|+.|+++|+.+.+.. .+.++++|
T Consensus       287 ~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~~~------~~~~v~f~~~d~~~~l~~~~~~~~~fD  358 (433)
T 1uwv_A          287 EDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARLN------GLQNVTFYHENLEEDVTKQPWAKNGFD  358 (433)
T ss_dssp             TCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHHHc------CCCceEEEECCHHHHhhhhhhhcCCCC
Confidence            458999999999999999998  678999999999999999887653      677999999999764432 24457899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      .|+++.|-..           ...+++.+.+ ++|++.+++.++...++.......
T Consensus       359 ~Vv~dPPr~g-----------~~~~~~~l~~-~~p~~ivyvsc~p~tlard~~~l~  402 (433)
T 1uwv_A          359 KVLLDPARAG-----------AAGVMQQIIK-LEPIRIVYVSCNPATLARDSEALL  402 (433)
T ss_dssp             EEEECCCTTC-----------CHHHHHHHHH-HCCSEEEEEESCHHHHHHHHHHHH
T ss_pred             EEEECCCCcc-----------HHHHHHHHHh-cCCCeEEEEECChHHHHhhHHHHH
Confidence            9998655321           1246666554 799999999998877777654443

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.36  E-value=2.9e-12  Score=113.92  Aligned_cols=103  Identities=15%  Similarity=0.214  Sum_probs=78.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+. +...++|+|+++ +++.|++++...      ++ +++.++.+|+.+ ++  ++++++|
T Consensus        65 ~~~VLDiGcGtG~ls~~la~~-g~~~v~gvD~s~-~~~~a~~~~~~~------~~~~~i~~~~~d~~~-~~--~~~~~~D  133 (340)
T 2fyt_A           65 DKVVLDVGCGTGILSMFAAKA-GAKKVLGVDQSE-ILYQAMDIIRLN------KLEDTITLIKGKIEE-VH--LPVEKVD  133 (340)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEESST-HHHHHHHHHHHT------TCTTTEEEEESCTTT-SC--CSCSCEE
T ss_pred             CCEEEEeeccCcHHHHHHHHc-CCCEEEEEChHH-HHHHHHHHHHHc------CCCCcEEEEEeeHHH-hc--CCCCcEE
Confidence            458999999999999999988 356899999996 999998877653      45 689999999874 43  5568999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      .|+.+.. ++.- .+.   .....++.++.++|||||.++
T Consensus       134 ~Ivs~~~-~~~l-~~~---~~~~~~l~~~~~~LkpgG~li  168 (340)
T 2fyt_A          134 VIISEWM-GYFL-LFE---SMLDSVLYAKNKYLAKGGSVY  168 (340)
T ss_dssp             EEEECCC-BTTB-TTT---CHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEcCc-hhhc-cCH---HHHHHHHHHHHhhcCCCcEEE
Confidence            9997641 1100 000   012358999999999999987

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.35  E-value=4.3e-12  Score=113.57  Aligned_cols=105  Identities=17%  Similarity=0.241  Sum_probs=81.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++|+|+ +.+++.|++++...      ++. ++.++.+|+.+.    ++. .+|
T Consensus       183 ~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~----~~~-~~D  250 (374)
T 1qzz_A          183 VRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA------GLADRVTVAEGDFFKP----LPV-TAD  250 (374)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT------TCTTTEEEEECCTTSC----CSC-CEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc------CCCCceEEEeCCCCCc----CCC-CCC
Confidence            45899999999999999999999999999999 99999998877553      443 899999998532    333 499


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++...-......      ....+++++.++|+|||++++...
T Consensus       251 ~v~~~~vl~~~~~~------~~~~~l~~~~~~L~pgG~l~i~e~  288 (374)
T 1qzz_A          251 VVLLSFVLLNWSDE------DALTILRGCVRALEPGGRLLVLDR  288 (374)
T ss_dssp             EEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             EEEEeccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEec
Confidence            99886532211100      012699999999999999988654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.35  E-value=6.3e-13  Score=112.74  Aligned_cols=115  Identities=10%  Similarity=-0.014  Sum_probs=79.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh-------------cC--CCC--------ccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV-------------SN--PGQ--------YQN  122 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~-------------~~--~~~--------~~n  122 (252)
                      ...|||||||+|.++..++...+ ..++|+|+|+.+++.|++++.....             ..  ...        ..+
T Consensus        57 ~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  135 (265)
T 2i62_A           57 GELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRA  135 (265)
T ss_dssp             EEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred             CCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhh
Confidence            45899999999999999998855 5899999999999998876532100             00  000        013


Q ss_pred             E-EEEeCCcccccCccCCC---CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          123 I-SVVRTNSMKYIPNYFEK---GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       123 v-~~~~~da~~~l~~~~~~---~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      + .++.+|+.. .. .+++   +++|.|++.+.-.+... +   ......+++++.++|||||.|++.+
T Consensus       136 v~~~~~~d~~~-~~-~~~~~~~~~fD~v~~~~~l~~~~~-~---~~~~~~~l~~~~~~LkpgG~li~~~  198 (265)
T 2i62_A          136 IKQVLKCDVTQ-SQ-PLGGVSLPPADCLLSTLCLDAACP-D---LPAYRTALRNLGSLLKPGGFLVMVD  198 (265)
T ss_dssp             EEEEEECCTTS-SS-TTTTCCCCCEEEEEEESCHHHHCS-S---HHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             heeEEEeeecc-CC-CCCccccCCccEEEEhhhhhhhcC-C---hHHHHHHHHHHHhhCCCCcEEEEEe
Confidence            8 899999864 22 2334   89999998764220000 0   0012369999999999999999976

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.35  E-value=5.5e-12  Score=111.03  Aligned_cols=105  Identities=16%  Similarity=0.238  Sum_probs=82.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++|+|++ .+++.|++++...      ++ .++.++.+|+.. .+  ++. .+|
T Consensus       166 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~~~-~~D  234 (335)
T 2r3s_A          166 PLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ------GVASRYHTIAGSAFE-VD--YGN-DYD  234 (335)
T ss_dssp             CSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH------TCGGGEEEEESCTTT-SC--CCS-CEE
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc------CCCcceEEEeccccc-CC--CCC-CCc
Confidence            468999999999999999999999999999999 9999999887654      44 469999999863 22  333 499


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-......      ....+++++.++|+|||.+++..
T Consensus       235 ~v~~~~~l~~~~~~------~~~~~l~~~~~~L~pgG~l~i~e  271 (335)
T 2r3s_A          235 LVLLPNFLHHFDVA------TCEQLLRKIKTALAVEGKVIVFD  271 (335)
T ss_dssp             EEEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEcchhccCCHH------HHHHHHHHHHHhCCCCcEEEEEe
Confidence            99985432211000      11369999999999999998865

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.34  E-value=1.9e-11  Score=111.86  Aligned_cols=107  Identities=14%  Similarity=0.163  Sum_probs=84.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.+++.+|+.  ...++|+|+++.+++.|++++...      ++. +.|+.+|+.+.++    . .+|.
T Consensus       291 ~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~~n------gl~-v~~~~~d~~~~~~----~-~fD~  356 (425)
T 2jjq_A          291 GEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVEIN------NVD-AEFEVASDREVSV----K-GFDT  356 (425)
T ss_dssp             SSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH------TCC-EEEEECCTTTCCC----T-TCSE
T ss_pred             CCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHc------CCc-EEEEECChHHcCc----c-CCCE
Confidence            458999999999999999987  568999999999999999887654      566 9999999875332    2 7999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR  197 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~  197 (252)
                      |+++.|-.-          ....+++.+. .|+|||.+++.++...++..+.
T Consensus       357 Vv~dPPr~g----------~~~~~~~~l~-~l~p~givyvsc~p~tlarDl~  397 (425)
T 2jjq_A          357 VIVDPPRAG----------LHPRLVKRLN-REKPGVIVYVSCNPETFARDVK  397 (425)
T ss_dssp             EEECCCTTC----------SCHHHHHHHH-HHCCSEEEEEESCHHHHHHHHH
T ss_pred             EEEcCCccc----------hHHHHHHHHH-hcCCCcEEEEECChHHHHhHHh
Confidence            999655211          1234777665 5999999999998777665544

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.34  E-value=9.6e-12  Score=105.52  Aligned_cols=117  Identities=17%  Similarity=0.117  Sum_probs=87.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCC-cc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKG-QL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~-s~  143 (252)
                      +..|||||||+|.+++.+|+..|...++|+|+++.+++.|++++...      ++. +|.+..+|+.+.+    .++ .+
T Consensus        22 g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~------gl~~~I~v~~gD~l~~~----~~~~~~   91 (244)
T 3gnl_A           22 NERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSS------GLTEQIDVRKGNGLAVI----EKKDAI   91 (244)
T ss_dssp             SEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------TCTTTEEEEECSGGGGC----CGGGCC
T ss_pred             CCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEEecchhhcc----Cccccc
Confidence            46899999999999999999988889999999999999999998764      665 4999999986533    233 59


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      |.|++.-         .... +-..++......|+++|.|+++....  ...+.+.+.+++
T Consensus        92 D~Iviag---------mGg~-lI~~IL~~~~~~L~~~~~lIlq~~~~--~~~lr~~L~~~G  140 (244)
T 3gnl_A           92 DTIVIAG---------MGGT-LIRTILEEGAAKLAGVTKLILQPNIA--AWQLREWSEQNN  140 (244)
T ss_dssp             CEEEEEE---------ECHH-HHHHHHHHTGGGGTTCCEEEEEESSC--HHHHHHHHHHHT
T ss_pred             cEEEEeC---------CchH-HHHHHHHHHHHHhCCCCEEEEEcCCC--hHHHHHHHHHCC
Confidence            9987621         0001 12358888889999999999987542  333444444443

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.34  E-value=7.7e-12  Score=111.59  Aligned_cols=103  Identities=15%  Similarity=0.208  Sum_probs=80.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++|+|+ +.+++.|++++...      +++ ++.++.+|+.+ .+  +++.  |
T Consensus       191 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~~~~--D  258 (359)
T 1x19_A          191 VKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK------GVADRMRGIAVDIYK-ES--YPEA--D  258 (359)
T ss_dssp             CCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT------TCTTTEEEEECCTTT-SC--CCCC--S
T ss_pred             CCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc------CCCCCEEEEeCcccc-CC--CCCC--C
Confidence            45899999999999999999999999999999 99999998877653      454 49999999863 22  4333  9


Q ss_pred             EEEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-. |+..       ....+++++.++|+|||++++..
T Consensus       259 ~v~~~~vlh~~~d~-------~~~~~l~~~~~~L~pgG~l~i~e  295 (359)
T 1x19_A          259 AVLFCRILYSANEQ-------LSTIMCKKAFDAMRSGGRLLILD  295 (359)
T ss_dssp             EEEEESCGGGSCHH-------HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEEEechhccCCHH-------HHHHHHHHHHHhcCCCCEEEEEe
Confidence            998765322 2110       01369999999999999998865

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.34  E-value=2.4e-12  Score=107.47  Aligned_cols=101  Identities=16%  Similarity=0.253  Sum_probs=76.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..+  .++|+|+|+.+++.|+++           .+++.++.+|+.. ++  + ++++|.
T Consensus        41 ~~~vLdiG~G~G~~~~~l~~~~~--~v~~~D~s~~~~~~a~~~-----------~~~~~~~~~d~~~-~~--~-~~~~D~  103 (239)
T 3bxo_A           41 ASSLLDVACGTGTHLEHFTKEFG--DTAGLELSEDMLTHARKR-----------LPDATLHQGDMRD-FR--L-GRKFSA  103 (239)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHHS--EEEEEESCHHHHHHHHHH-----------CTTCEEEECCTTT-CC--C-SSCEEE
T ss_pred             CCeEEEecccCCHHHHHHHHhCC--cEEEEeCCHHHHHHHHHh-----------CCCCEEEECCHHH-cc--c-CCCCcE
Confidence            45899999999999999999965  899999999999887653           2468999999863 43  3 678999


Q ss_pred             EEEeC-CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLF-PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~f-pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |++.+ .-.+....     -....+++++.++|+|||.+++.+.
T Consensus       104 v~~~~~~~~~~~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~  142 (239)
T 3bxo_A          104 VVSMFSSVGYLKTT-----EELGAAVASFAEHLEPGGVVVVEPW  142 (239)
T ss_dssp             EEECTTGGGGCCSH-----HHHHHHHHHHHHTEEEEEEEEECCC
T ss_pred             EEEcCchHhhcCCH-----HHHHHHHHHHHHhcCCCeEEEEEec
Confidence            99543 11111000     0113699999999999999999653

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.34  E-value=1.5e-11  Score=110.68  Aligned_cols=107  Identities=11%  Similarity=0.086  Sum_probs=85.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...||||| |+|.+++.++...+...++|+|+++.|++.|++++...      ++.|+.++.+|+.+.++.. .++++|.
T Consensus       173 ~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~------g~~~v~~~~~D~~~~l~~~-~~~~fD~  244 (373)
T 2qm3_A          173 NKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI------GYEDIEIFTFDLRKPLPDY-ALHKFDT  244 (373)
T ss_dssp             TCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH------TCCCEEEECCCTTSCCCTT-TSSCBSE
T ss_pred             CCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc------CCCCEEEEEChhhhhchhh-ccCCccE
Confidence            45899999 99999999999988789999999999999999988765      5668999999987534321 2468999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~~td~  189 (252)
                      |+++.|-.+.   +      ...+++.+.++|+||| .+++.+..
T Consensus       245 Vi~~~p~~~~---~------~~~~l~~~~~~LkpgG~~~~~~~~~  280 (373)
T 2qm3_A          245 FITDPPETLE---A------IRAFVGRGIATLKGPRCAGYFGITR  280 (373)
T ss_dssp             EEECCCSSHH---H------HHHHHHHHHHTBCSTTCEEEEEECT
T ss_pred             EEECCCCchH---H------HHHHHHHHHHHcccCCeEEEEEEec
Confidence            9998653321   1      1579999999999999 44665543

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.34  E-value=8.2e-13  Score=114.29  Aligned_cols=115  Identities=13%  Similarity=0.007  Sum_probs=75.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH-------------hhcCCCC-------------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL-------------RVSNPGQ-------------  119 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~-------------~~~~~~~-------------  119 (252)
                      ...|||||||+|.+.. ++...+...|+|+|+|+.|++.|++++...             ...  .+             
T Consensus        72 ~~~vLDiGcG~G~~~~-l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~  148 (289)
T 2g72_A           72 GRTLIDIGSGPTVYQL-LSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLI--EGKGECWQDKERQLR  148 (289)
T ss_dssp             CSEEEEETCTTCCGGG-TTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHH--HCSCCCHHHHHHHHH
T ss_pred             CCeEEEECCCcChHHH-HhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHh--cCcccchhhhHHHHH
Confidence            4589999999999544 343334669999999999999888754210             000  00             


Q ss_pred             cccEEEEeCCcccccC---ccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          120 YQNISVVRTNSMKYIP---NYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       120 ~~nv~~~~~da~~~l~---~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+.++.+|+...++   ..++++++|.|++++.-.|.....    .....+|+++.++|||||.|++..
T Consensus       149 ~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~----~~~~~~l~~~~r~LkpGG~l~~~~  215 (289)
T 2g72_A          149 ARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL----ASFQRALDHITTLLRPGGHLLLIG  215 (289)
T ss_dssp             HHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSH----HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCH----HHHHHHHHHHHHhcCCCCEEEEEE
Confidence            0126788889864232   124567899999987543311000    001369999999999999999963

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.34  E-value=3.4e-12  Score=110.45  Aligned_cols=100  Identities=12%  Similarity=0.148  Sum_probs=81.7

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++.+|||+|||+|.+++.+|+.. ...++|+|+++.+++.+++|+...      ++. ++.++++|+.+.    ...+.+
T Consensus       125 ~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~~N------~v~~~v~~~~~D~~~~----~~~~~~  193 (278)
T 3k6r_A          125 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN------KVEDRMSAYNMDNRDF----PGENIA  193 (278)
T ss_dssp             TTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCTTTC----CCCSCE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHHHc------CCCCcEEEEeCcHHHh----ccccCC
Confidence            46699999999999999999884 468999999999999999998664      554 599999998753    336789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+++.|.--            ..++..+.++||+||.|++-+
T Consensus       194 D~Vi~~~p~~~------------~~~l~~a~~~lk~gG~ih~~~  225 (278)
T 3k6r_A          194 DRILMGYVVRT------------HEFIPKALSIAKDGAIIHYHN  225 (278)
T ss_dssp             EEEEECCCSSG------------GGGHHHHHHHEEEEEEEEEEE
T ss_pred             CEEEECCCCcH------------HHHHHHHHHHcCCCCEEEEEe
Confidence            99998865221            248999999999999997643

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.33  E-value=4.7e-12  Score=108.69  Aligned_cols=105  Identities=10%  Similarity=0.067  Sum_probs=72.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|++  +..|+|||+|+.|++.|++++..       ..-+..+...+..  +. ...++++|.
T Consensus        46 g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~~-------~~v~~~~~~~~~~--~~-~~~~~~fD~  113 (261)
T 3iv6_A           46 GSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALAD-------RCVTIDLLDITAE--IP-KELAGHFDF  113 (261)
T ss_dssp             TCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTSS-------SCCEEEECCTTSC--CC-GGGTTCCSE
T ss_pred             cCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHh-------ccceeeeeecccc--cc-cccCCCccE
Confidence            458999999999999999998  56899999999999998876421       1112222222210  01 112568999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++++.-.+.....      ...+++.+.++| |||++++....
T Consensus       114 Vv~~~~l~~~~~~~------~~~~l~~l~~lL-PGG~l~lS~~~  150 (261)
T 3iv6_A          114 VLNDRLINRFTTEE------ARRACLGMLSLV-GSGTVRASVKL  150 (261)
T ss_dssp             EEEESCGGGSCHHH------HHHHHHHHHHHH-TTSEEEEEEEB
T ss_pred             EEEhhhhHhCCHHH------HHHHHHHHHHhC-cCcEEEEEecc
Confidence            99876433221111      125899999999 99999998754

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.33  E-value=7.1e-12  Score=111.29  Aligned_cols=107  Identities=16%  Similarity=0.199  Sum_probs=82.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++|+|+ +.+++.|++++...      +. +++.++.+|+.+ .+ .+.+..+|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~-~~~~~~~D  250 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH------DLGGRVEFFEKNLLD-AR-NFEGGAAD  250 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT------TCGGGEEEEECCTTC-GG-GGTTCCEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc------CCCCceEEEeCCccc-Cc-ccCCCCcc
Confidence            45899999999999999999999999999999 88999998877553      43 579999999864 22 12356799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-.+....      ....+++++.++|+|||+|++..
T Consensus       251 ~v~~~~vlh~~~~~------~~~~~l~~~~~~L~pgG~l~i~e  287 (352)
T 3mcz_A          251 VVMLNDCLHYFDAR------EAREVIGHAAGLVKPGGALLILT  287 (352)
T ss_dssp             EEEEESCGGGSCHH------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             EEEEecccccCCHH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence            99986533221110      01369999999999999999864

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.32  E-value=5.8e-13  Score=114.01  Aligned_cols=117  Identities=13%  Similarity=-0.043  Sum_probs=76.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-------------CCC----------Cccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-------------NPG----------QYQN  122 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-------------~~~----------~~~n  122 (252)
                      +..|||||||+|.++..++... ...|+|+|+|+.|++.|++++......             ...          ...+
T Consensus        56 g~~vLDiGCG~G~~~~~~~~~~-~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~  134 (263)
T 2a14_A           56 GDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  134 (263)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CceEEEeCCCccHHHHHHHHhh-hcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhh
Confidence            4589999999998887776653 237999999999999998765321000             000          0124


Q ss_pred             EE-EEeCCcccccCc-cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          123 IS-VVRTNSMKYIPN-YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       123 v~-~~~~da~~~l~~-~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +. ++++|+....+. ....+++|.|+.++.-.+...    .+.-...++++++++|||||.|++.+
T Consensus       135 i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~----~~~~~~~~l~~i~r~LKPGG~li~~~  197 (263)
T 2a14_A          135 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC----SLDAYRAALCNLASLLKPGGHLVTTV  197 (263)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS----SHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence            55 899998742220 012568999998864222100    00001258999999999999999985

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.32  E-value=1.3e-11  Score=110.69  Aligned_cols=104  Identities=14%  Similarity=0.153  Sum_probs=81.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++++|+ +.+++.|++++...      + .++|.++.+|+.+    .++. .+|
T Consensus       203 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------~l~~~v~~~~~d~~~----~~p~-~~D  270 (369)
T 3gwz_A          203 AATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR------GLADRCEILPGDFFE----TIPD-GAD  270 (369)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT------TCTTTEEEEECCTTT----CCCS-SCS
T ss_pred             CcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc------CcCCceEEeccCCCC----CCCC-Cce
Confidence            45899999999999999999999999999999 99999998877553      3 3689999999752    2444 799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-.+....      ....++++++++|+|||+|++..
T Consensus       271 ~v~~~~vlh~~~d~------~~~~~L~~~~~~L~pgG~l~i~e  307 (369)
T 3gwz_A          271 VYLIKHVLHDWDDD------DVVRILRRIATAMKPDSRLLVID  307 (369)
T ss_dssp             EEEEESCGGGSCHH------HHHHHHHHHHTTCCTTCEEEEEE
T ss_pred             EEEhhhhhccCCHH------HHHHHHHHHHHHcCCCCEEEEEE
Confidence            99875432111100      01259999999999999999864

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.32  E-value=4.9e-12  Score=114.65  Aligned_cols=112  Identities=11%  Similarity=0.159  Sum_probs=82.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|.+++.+|..  +..++|+|+|+.+++.|++++...      ++. ..+.++|+.+.+.. + .+.+|.
T Consensus       215 g~~VLDlg~GtG~~sl~~a~~--ga~V~avDis~~al~~a~~n~~~n------g~~-~~~~~~D~~~~l~~-~-~~~fD~  283 (393)
T 4dmg_A          215 GERVLDVYSYVGGFALRAARK--GAYALAVDKDLEALGVLDQAALRL------GLR-VDIRHGEALPTLRG-L-EGPFHH  283 (393)
T ss_dssp             TCEEEEESCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH------TCC-CEEEESCHHHHHHT-C-CCCEEE
T ss_pred             CCeEEEcccchhHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHHHh------CCC-CcEEEccHHHHHHH-h-cCCCCE
Confidence            568999999999999999998  445999999999999999988764      444 35679999865543 2 334999


Q ss_pred             EEEeCCCCcccccccccc--ccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRR--VISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr--~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |+++.|. +.+.+.....  -....++..+.++|+|||.|++.+.+
T Consensus       284 Ii~dpP~-f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s  328 (393)
T 4dmg_A          284 VLLDPPT-LVKRPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCS  328 (393)
T ss_dssp             EEECCCC-CCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEECCCc-CCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECC
Confidence            9998553 2211111000  11246899999999999999977754

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.32  E-value=7.8e-12  Score=111.38  Aligned_cols=105  Identities=16%  Similarity=0.240  Sum_probs=81.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++++|+ +.+++.|++++...      ++. ++.++.+|+.+.    ++. .+|
T Consensus       184 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~~----~~~-~~D  251 (360)
T 1tw3_A          184 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE------GLSDRVDVVEGDFFEP----LPR-KAD  251 (360)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT------TCTTTEEEEECCTTSC----CSS-CEE
T ss_pred             CcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc------CCCCceEEEeCCCCCC----CCC-Ccc
Confidence            45899999999999999999999999999999 99999998877553      443 899999997532    333 499


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++...-......      ....+++++.++|+|||.+++...
T Consensus       252 ~v~~~~vl~~~~~~------~~~~~l~~~~~~L~pgG~l~i~e~  289 (360)
T 1tw3_A          252 AIILSFVLLNWPDH------DAVRILTRCAEALEPGGRILIHER  289 (360)
T ss_dssp             EEEEESCGGGSCHH------HHHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEEcccccCCCHH------HHHHHHHHHHHhcCCCcEEEEEEE
Confidence            99876532111100      012599999999999999998754

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.32  E-value=5.1e-12  Score=113.88  Aligned_cols=104  Identities=13%  Similarity=0.143  Sum_probs=78.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.+++.+|+.. ...++|||+| .|++.|++++...      ++. ++.++++|+.+ +.  ++ +.+|
T Consensus        64 ~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~~~------~~~~~v~~~~~d~~~-~~--~~-~~~D  131 (376)
T 3r0q_C           64 GKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVKAN------NLDHIVEVIEGSVED-IS--LP-EKVD  131 (376)
T ss_dssp             TCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHHHT------TCTTTEEEEESCGGG-CC--CS-SCEE
T ss_pred             CCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHHHc------CCCCeEEEEECchhh-cC--cC-Ccce
Confidence            4589999999999999999983 3489999999 9999998877653      454 59999999874 43  33 7899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+++...-...  +   .-....++..+.++|||||.|++.
T Consensus       132 ~Iv~~~~~~~l~--~---e~~~~~~l~~~~~~LkpgG~li~~  168 (376)
T 3r0q_C          132 VIISEWMGYFLL--R---ESMFDSVISARDRWLKPTGVMYPS  168 (376)
T ss_dssp             EEEECCCBTTBT--T---TCTHHHHHHHHHHHEEEEEEEESS
T ss_pred             EEEEcChhhccc--c---hHHHHHHHHHHHhhCCCCeEEEEe
Confidence            999854211110  0   001235899999999999999763

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.32  E-value=1.1e-11  Score=102.82  Aligned_cols=93  Identities=18%  Similarity=0.294  Sum_probs=73.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..++..      +|+|+++.+++.|+++             ++.++.+|+.. ++  ++++++|.|
T Consensus        49 ~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~~-------------~~~~~~~d~~~-~~--~~~~~fD~v  106 (219)
T 1vlm_A           49 GRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARKR-------------GVFVLKGTAEN-LP--LKDESFDFA  106 (219)
T ss_dssp             SCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHHT-------------TCEEEECBTTB-CC--SCTTCEEEE
T ss_pred             CcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHhc-------------CCEEEEccccc-CC--CCCCCeeEE
Confidence            47999999999999988765      9999999999877542             68899999863 44  567899999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      ++...-.+...        ...+++++.++|+|||.+++.+.+
T Consensus       107 ~~~~~l~~~~~--------~~~~l~~~~~~L~pgG~l~i~~~~  141 (219)
T 1vlm_A          107 LMVTTICFVDD--------PERALKEAYRILKKGGYLIVGIVD  141 (219)
T ss_dssp             EEESCGGGSSC--------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEcchHhhccC--------HHHHHHHHHHHcCCCcEEEEEEeC
Confidence            98754322211        136999999999999999998654

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.30  E-value=3.5e-11  Score=106.41  Aligned_cols=103  Identities=17%  Similarity=0.258  Sum_probs=77.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+. +...++|+|++ .+++.|++++...      ++ +++.++.+|+.+ ++  ++++.+|
T Consensus        39 ~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~~~------~~~~~i~~~~~d~~~-~~--~~~~~~D  107 (328)
T 1g6q_1           39 DKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVELN------GFSDKITLLRGKLED-VH--LPFPKVD  107 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHHHT------TCTTTEEEEESCTTT-SC--CSSSCEE
T ss_pred             CCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHHHc------CCCCCEEEEECchhh-cc--CCCCccc
Confidence            458999999999999999987 45689999999 6899888877553      44 469999999874 43  5567899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      .|++..+.....  +   ......++..+.++|+|||.++
T Consensus       108 ~Ivs~~~~~~l~--~---~~~~~~~l~~~~~~LkpgG~li  142 (328)
T 1g6q_1          108 IIISEWMGYFLL--Y---ESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEEECCCBTTBS--T---TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEeCchhhcc--c---HHHHHHHHHHHHhhcCCCeEEE
Confidence            999864322110  0   0112368899999999999997

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=99.28  E-value=5e-12  Score=102.60  Aligned_cols=107  Identities=11%  Similarity=0.070  Sum_probs=74.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC---------CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCccccc-
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE---------VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYI-  134 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~---------~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l-  134 (252)
                      ...|||||||+|.++..+++..+.         ..++|+|+++.+                 ...++.++ .+|+.... 
T Consensus        23 ~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------------~~~~~~~~~~~d~~~~~~   85 (196)
T 2nyu_A           23 GLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------------PLEGATFLCPADVTDPRT   85 (196)
T ss_dssp             TCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------------CCTTCEEECSCCTTSHHH
T ss_pred             CCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------------cCCCCeEEEeccCCCHHH
Confidence            458999999999999999999764         789999999831                 34578899 88875310 


Q ss_pred             ----CccCCCCcccEEEEeCCCCcccc---ccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          135 ----PNYFEKGQLTKMFFLFPDPHFKE---KNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       135 ----~~~~~~~s~d~i~~~fpdP~~k~---~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                          ...++++++|.|+.+++..+...   .+....-....+++++.++|+|||.|++.+-.
T Consensus        86 ~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  147 (196)
T 2nyu_A           86 SQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWA  147 (196)
T ss_dssp             HHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             HHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence                01244568999998764332110   00000001136899999999999999998643

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=99.28  E-value=8.2e-12  Score=108.65  Aligned_cols=98  Identities=16%  Similarity=0.141  Sum_probs=69.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++. +...|+|||+++.|++.+.+           ..+++..+ ..|+...-...++..++|
T Consensus        86 g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r-----------~~~rv~~~~~~ni~~l~~~~l~~~~fD  153 (291)
T 3hp7_A           86 DMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLR-----------QDDRVRSMEQYNFRYAEPVDFTEGLPS  153 (291)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHH-----------TCTTEEEECSCCGGGCCGGGCTTCCCS
T ss_pred             ccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHH-----------hCcccceecccCceecchhhCCCCCCC
Confidence            458999999999999999987 45689999999999976432           12234333 345442111224455699


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|++....-+.           ..+|.++.++|+|||.+++.
T Consensus       154 ~v~~d~sf~sl-----------~~vL~e~~rvLkpGG~lv~l  184 (291)
T 3hp7_A          154 FASIDVSFISL-----------NLILPALAKILVDGGQVVAL  184 (291)
T ss_dssp             EEEECCSSSCG-----------GGTHHHHHHHSCTTCEEEEE
T ss_pred             EEEEEeeHhhH-----------HHHHHHHHHHcCcCCEEEEE
Confidence            99876543322           35999999999999999986

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.27  E-value=1.3e-11  Score=108.75  Aligned_cols=102  Identities=15%  Similarity=0.146  Sum_probs=81.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||||||+|.++..+++.+|+..++|+|+ +.+++.|++++...      ++ +++.++.+|+.+  +  ++ ..+|.
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------~~~~~v~~~~~d~~~--~--~~-~~~D~  236 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL------LAGERVSLVGGDMLQ--E--VP-SNGDI  236 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH------HHTTSEEEEESCTTT--C--CC-SSCSE
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc------CCCCcEEEecCCCCC--C--CC-CCCCE
Confidence            5899999999999999999999999999999 99999998876543      33 579999999763  2  33 57999


Q ss_pred             EEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++...-. |...       ....+++.+.++|+|||++++..
T Consensus       237 v~~~~vl~~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e  272 (334)
T 2ip2_A          237 YLLSRIIGDLDEA-------ASLRLLGNCREAMAGDGRVVVIE  272 (334)
T ss_dssp             EEEESCGGGCCHH-------HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEchhccCCCHH-------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            99865432 2111       11369999999999999999974

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=99.27  E-value=1.7e-11  Score=103.43  Aligned_cols=99  Identities=11%  Similarity=0.033  Sum_probs=62.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc-cCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN-YFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~-~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.. ...++|||+|+.|++.|.++....   ......|+.++..+   .++. .++..++|
T Consensus        38 g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~---~~~~~~~~~~~~~~---~~~~~~~d~~~~D  110 (232)
T 3opn_A           38 GKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERV---VVMEQFNFRNAVLA---DFEQGRPSFTSID  110 (232)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTE---EEECSCCGGGCCGG---GCCSCCCSEEEEC
T ss_pred             CCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccc---cccccceEEEeCHh---HcCcCCCCEEEEE
Confidence            4489999999999999999983 358999999999998765421100   00011122222211   1111 12233455


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+++++                ..++.++.++|||||.+++.+
T Consensus       111 ~v~~~l----------------~~~l~~i~rvLkpgG~lv~~~  137 (232)
T 3opn_A          111 VSFISL----------------DLILPPLYEILEKNGEVAALI  137 (232)
T ss_dssp             CSSSCG----------------GGTHHHHHHHSCTTCEEEEEE
T ss_pred             EEhhhH----------------HHHHHHHHHhccCCCEEEEEE
Confidence            444332                249999999999999999975

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.27  E-value=5.2e-12  Score=103.33  Aligned_cols=122  Identities=12%  Similarity=0.132  Sum_probs=83.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC------ccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP------NYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~------~~~~  139 (252)
                      ...|||+|||+|.++..+|++  ...++|||+++.                 ...+|+.++++|+.+ ..      ..+.
T Consensus        26 g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~-----------------~~~~~v~~~~~D~~~-~~~~~~~~~~~~   85 (191)
T 3dou_A           26 GDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEM-----------------EEIAGVRFIRCDIFK-ETIFDDIDRALR   85 (191)
T ss_dssp             TCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCC-----------------CCCTTCEEEECCTTS-SSHHHHHHHHHH
T ss_pred             CCEEEEEeecCCHHHHHHHHc--CCcEEEEecccc-----------------ccCCCeEEEEccccC-HHHHHHHHHHhh
Confidence            458999999999999999998  779999999874                 135689999999863 21      1111


Q ss_pred             ---CCcccEEEEeCCCCcccc---ccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025470          140 ---KGQLTKMFFLFPDPHFKE---KNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       140 ---~~s~d~i~~~fpdP~~k~---~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~  209 (252)
                         .+.+|.|+.+.+..+...   .+....-.....++.+.++|||||.|++.+-...-...+...+...  |..+
T Consensus        86 ~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~~~~~~~~l~~~--F~~v  159 (191)
T 3dou_A           86 EEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDMTNDFIAIWRKN--FSSY  159 (191)
T ss_dssp             HHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTHHHHHHHHHGGG--EEEE
T ss_pred             cccCCcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCCHHHHHHHHHHh--cCEE
Confidence               148999998764332211   1111111234678889999999999998775444445556666433  6555

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.27  E-value=1.4e-11  Score=109.79  Aligned_cols=103  Identities=12%  Similarity=0.076  Sum_probs=76.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+|+. +...++|||+++ +++.|++++...      ++ +++.++.+|+.+ ++  + ++++|
T Consensus        51 ~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~~~------~l~~~v~~~~~d~~~-~~--~-~~~~D  118 (348)
T 2y1w_A           51 DKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVKSN------NLTDRIVVIPGKVEE-VS--L-PEQVD  118 (348)
T ss_dssp             TCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHHHT------TCTTTEEEEESCTTT-CC--C-SSCEE
T ss_pred             cCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHHHc------CCCCcEEEEEcchhh-CC--C-CCcee
Confidence            458999999999999999986 456999999996 888888776553      55 689999999874 33  3 36799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+...+.-.....      -....+..+.++|||||.+++.
T Consensus       119 ~Ivs~~~~~~~~~~------~~~~~l~~~~~~LkpgG~li~~  154 (348)
T 2y1w_A          119 IIISEPMGYMLFNE------RMLESYLHAKKYLKPSGNMFPT  154 (348)
T ss_dssp             EEEECCCBTTBTTT------SHHHHHHHGGGGEEEEEEEESC
T ss_pred             EEEEeCchhcCChH------HHHHHHHHHHhhcCCCeEEEEe
Confidence            99986542211000      0125777889999999999864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.26  E-value=1.1e-11  Score=110.21  Aligned_cols=112  Identities=10%  Similarity=0.193  Sum_probs=84.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-----CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-----VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-----~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~  140 (252)
                      ...|||+|||+|.++..+++..+.     ..++|+|+++.+++.|+.++...      ++ ++.++++|+...    ...
T Consensus       131 ~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~------g~-~~~i~~~D~l~~----~~~  199 (344)
T 2f8l_A          131 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ------RQ-KMTLLHQDGLAN----LLV  199 (344)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH------TC-CCEEEESCTTSC----CCC
T ss_pred             CCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC------CC-CceEEECCCCCc----ccc
Confidence            458999999999999999988654     78999999999999999887654      44 689999997531    235


Q ss_pred             CcccEEEEeCCCCcccccccccc----------ccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRR----------VISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr----------~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      ..+|.|+.|.|-.+.......++          .....+++.+.+.|+|||++.+.+.
T Consensus       200 ~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p  257 (344)
T 2f8l_A          200 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP  257 (344)
T ss_dssp             CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             CCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence            78999999987433211100000          0113589999999999999999883

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.26  E-value=2.9e-11  Score=104.55  Aligned_cols=114  Identities=10%  Similarity=0.013  Sum_probs=76.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEec-CHhHHHHHHHHHHHHhhcCCCCc-----ccEEEEeCCcccccCccC-
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMEL-RDKVTEYVKERILALRVSNPGQY-----QNISVVRTNSMKYIPNYF-  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDi-s~~~i~~a~~~~~~~~~~~~~~~-----~nv~~~~~da~~~l~~~~-  138 (252)
                      ...|||||||+|.+++.+|+.. ...++|+|+ ++.+++.|+.++... .....++     +++.++..|..+...... 
T Consensus        80 ~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           80 GKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREH-TANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTT-CC----------CCCEEEECCTTSCTHHHHH
T ss_pred             CCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHh-hhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            4589999999999999999873 348999999 899999999887210 0000233     378888666432221111 


Q ss_pred             --CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhc---C--CcEEEEEeCc
Q 025470          139 --EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLG---V--GGIIYTITDV  189 (252)
Q Consensus       139 --~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lk---p--gG~l~~~td~  189 (252)
                        .++.+|.|++...--+..        ....+++.+.++|+   |  ||.+++....
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~~--------~~~~ll~~l~~~Lk~~~p~~gG~l~v~~~~  207 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFHQ--------AHDALLRSVKMLLALPANDPTAVALVTFTH  207 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCGG--------GHHHHHHHHHHHBCCTTTCTTCEEEEEECC
T ss_pred             hccCCCCCEEEEeCcccChH--------HHHHHHHHHHHHhcccCCCCCCEEEEEEEe
Confidence              457899998743221111        12369999999999   9  9988776544

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.26  E-value=3.6e-11  Score=107.99  Aligned_cols=109  Identities=17%  Similarity=0.174  Sum_probs=79.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC------
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK------  140 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~------  140 (252)
                      ..|||+|||+|.+++.+|+.  ...++|+|+++.+++.|++++...      +++|+.|+.+|+.+.++.....      
T Consensus       215 ~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~~n------g~~~v~~~~~d~~~~~~~~~~~~~~~~l  286 (369)
T 3bt7_A          215 GDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIAAN------HIDNVQIIRMAAEEFTQAMNGVREFNRL  286 (369)
T ss_dssp             SEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHHHT------TCCSEEEECCCSHHHHHHHSSCCCCTTG
T ss_pred             CEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECCHHHHHHHHhhccccccc
Confidence            47999999999999999986  458999999999999999887653      7789999999997654321111      


Q ss_pred             -------CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe-CchHHHHHHH
Q 025470          141 -------GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT-DVEELGDWMR  197 (252)
Q Consensus       141 -------~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t-d~~~~~~~~~  197 (252)
                             ..+|.|+++.|-.              .+...+.+.|+++|.+++.+ +...++..+.
T Consensus       287 ~~~~~~~~~fD~Vv~dPPr~--------------g~~~~~~~~l~~~g~ivyvsc~p~t~ard~~  337 (369)
T 3bt7_A          287 QGIDLKSYQCETIFVDPPRS--------------GLDSETEKMVQAYPRILYISCNPETLCKNLE  337 (369)
T ss_dssp             GGSCGGGCCEEEEEECCCTT--------------CCCHHHHHHHTTSSEEEEEESCHHHHHHHHH
T ss_pred             cccccccCCCCEEEECcCcc--------------ccHHHHHHHHhCCCEEEEEECCHHHHHHHHH
Confidence                   3799998864421              13445666777887776665 4444444433

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.25  E-value=2.1e-11  Score=118.04  Aligned_cols=115  Identities=10%  Similarity=0.105  Sum_probs=86.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc--cEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ--NISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +..|||+|||+|.+++.+|... ...++|||+|+.+++.|++++...      ++.  ++.++++|+.+.++.  ..+.+
T Consensus       540 g~~VLDlg~GtG~~sl~aa~~g-a~~V~aVD~s~~al~~a~~N~~~n------gl~~~~v~~i~~D~~~~l~~--~~~~f  610 (703)
T 3v97_A          540 GKDFLNLFSYTGSATVHAGLGG-ARSTTTVDMSRTYLEWAERNLRLN------GLTGRAHRLIQADCLAWLRE--ANEQF  610 (703)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHT------TCCSTTEEEEESCHHHHHHH--CCCCE
T ss_pred             CCcEEEeeechhHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHc------CCCccceEEEecCHHHHHHh--cCCCc
Confidence            4589999999999999999864 346999999999999999988653      554  899999999865542  35789


Q ss_pred             cEEEEeCCCCcccccc---ccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          144 TKMFFLFPDPHFKEKN---HRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h---~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |.|+++.|.--..+..   ....-....++..+.++|+|||.|++.+..
T Consensus       611 D~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~  659 (703)
T 3v97_A          611 DLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK  659 (703)
T ss_dssp             EEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             cEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence            9999976531100000   000012346899999999999999999876

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.24  E-value=2.4e-11  Score=109.59  Aligned_cols=108  Identities=11%  Similarity=0.010  Sum_probs=83.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcC---------CCCcccEEEEeCCcccccCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSN---------PGQYQNISVVRTNSMKYIPN  136 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~---------~~~~~nv~~~~~da~~~l~~  136 (252)
                      ...|||+|||+|.+++.+|...+...++++|+++.+++.|++|+.......         ..++.|+.++++|+...+..
T Consensus        48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~~  127 (378)
T 2dul_A           48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  127 (378)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHHh
Confidence            348999999999999999999877789999999999999999986540000         00556799999999764432


Q ss_pred             cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          137 YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       137 ~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                       . ...+|.|+++   |...         ...++..+.+.|++||.+++..
T Consensus       128 -~-~~~fD~I~lD---P~~~---------~~~~l~~a~~~lk~gG~l~vt~  164 (378)
T 2dul_A          128 -R-HRYFHFIDLD---PFGS---------PMEFLDTALRSAKRRGILGVTA  164 (378)
T ss_dssp             -S-TTCEEEEEEC---CSSC---------CHHHHHHHHHHEEEEEEEEEEE
T ss_pred             -c-cCCCCEEEeC---CCCC---------HHHHHHHHHHhcCCCCEEEEEe
Confidence             2 4579999964   3211         1369999999999999988864

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.24  E-value=1.7e-11  Score=106.38  Aligned_cols=77  Identities=13%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.  ...++|||+++.+++.+++++..      .+. +|+.++++|+.. ++  +  .++|
T Consensus        29 ~~~VLDiG~G~G~lt~~L~~~--~~~v~~vD~~~~~~~~a~~~~~~------~~~~~~v~~~~~D~~~-~~--~--~~fD   95 (285)
T 1zq9_A           29 TDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQG------TPVASKLQVLVGDVLK-TD--L--PFFD   95 (285)
T ss_dssp             TCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT------STTGGGEEEEESCTTT-SC--C--CCCS
T ss_pred             CCEEEEEcCcccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHHh------cCCCCceEEEEcceec-cc--c--hhhc
Confidence            458999999999999999999  45899999999999998876532      233 689999999863 32  2  2789


Q ss_pred             EEEEeCCCCcc
Q 025470          145 KMFFLFPDPHF  155 (252)
Q Consensus       145 ~i~~~fpdP~~  155 (252)
                      .|+.|.|-.|.
T Consensus        96 ~vv~nlpy~~~  106 (285)
T 1zq9_A           96 TCVANLPYQIS  106 (285)
T ss_dssp             EEEEECCGGGH
T ss_pred             EEEEecCcccc
Confidence            99999876553

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.23  E-value=1.1e-10  Score=95.19  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=77.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.++..++.. +...++|+|+++.+++.|++++         .  ++.++++|+.+ ++     +++|.
T Consensus        52 ~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~---------~--~~~~~~~d~~~-~~-----~~~D~  113 (200)
T 1ne2_A           52 GRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC---------G--GVNFMVADVSE-IS-----GKYDT  113 (200)
T ss_dssp             TSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC---------T--TSEEEECCGGG-CC-----CCEEE
T ss_pred             CCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhc---------C--CCEEEECcHHH-CC-----CCeeE
Confidence            458999999999999999988 4457999999999999887653         1  79999999874 32     68999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      |+++.|-.+...      -....+++++.++|   |.+++..+.. -..++.+.+...
T Consensus       114 v~~~~p~~~~~~------~~~~~~l~~~~~~~---g~~~~~~~~~-~~~~~~~~~~~~  161 (200)
T 1ne2_A          114 WIMNPPFGSVVK------HSDRAFIDKAFETS---MWIYSIGNAK-ARDFLRREFSAR  161 (200)
T ss_dssp             EEECCCC-------------CHHHHHHHHHHE---EEEEEEEEGG-GHHHHHHHHHHH
T ss_pred             EEECCCchhccC------chhHHHHHHHHHhc---CcEEEEEcCc-hHHHHHHHHHHC
Confidence            999876544321      12346899999998   4455555433 344555555443

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=99.21  E-value=4.5e-11  Score=107.23  Aligned_cols=96  Identities=17%  Similarity=0.248  Sum_probs=73.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++++|+..++++|+ +.+++.|+            ..+++.++.+|+.+    .++++  |.
T Consensus       204 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~----~~p~~--D~  264 (368)
T 3reo_A          204 LTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP------------AFSGVEHLGGDMFD----GVPKG--DA  264 (368)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------------CCTTEEEEECCTTT----CCCCC--SE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh------------hcCCCEEEecCCCC----CCCCC--CE
Confidence            45899999999999999999999999999999 77765432            23689999999863    24444  88


Q ss_pred             EEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++...-. |...       ....+|++++++|+|||+|++..
T Consensus       265 v~~~~vlh~~~~~-------~~~~~l~~~~~~L~pgG~l~i~e  300 (368)
T 3reo_A          265 IFIKWICHDWSDE-------HCLKLLKNCYAALPDHGKVIVAE  300 (368)
T ss_dssp             EEEESCGGGBCHH-------HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEEechhhcCCHH-------HHHHHHHHHHHHcCCCCEEEEEE
Confidence            88765432 2111       01258999999999999999864

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.21  E-value=1.7e-11  Score=113.81  Aligned_cols=102  Identities=12%  Similarity=0.075  Sum_probs=76.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.+++.+|+ .+...++|+|+++ +++.|++++...      ++ +++.++.+|+.+ ++  + ++.+|
T Consensus       159 ~~~VLDiGcGtG~la~~la~-~~~~~V~gvD~s~-~l~~A~~~~~~~------gl~~~v~~~~~d~~~-~~--~-~~~fD  226 (480)
T 3b3j_A          159 DKIVLDVGCGSGILSFFAAQ-AGARKIYAVEAST-MAQHAEVLVKSN------NLTDRIVVIPGKVEE-VS--L-PEQVD  226 (480)
T ss_dssp             TCEEEEESCSTTHHHHHHHH-TTCSEEEEEECHH-HHHHHHHHHHHT------TCTTTEEEEESCTTT-CC--C-SSCEE
T ss_pred             CCEEEEecCcccHHHHHHHH-cCCCEEEEEEcHH-HHHHHHHHHHHc------CCCCcEEEEECchhh-Cc--c-CCCeE
Confidence            45899999999999999988 4677999999998 999998877653      55 689999999864 32  2 35899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .|+.+.+.-.....      -....+..+.++|||||.+++
T Consensus       227 ~Ivs~~~~~~~~~e------~~~~~l~~~~~~LkpgG~li~  261 (480)
T 3b3j_A          227 IIISEPMGYMLFNE------RMLESYLHAKKYLKPSGNMFP  261 (480)
T ss_dssp             EEECCCCHHHHTCH------HHHHHHHHGGGGEEEEEEEES
T ss_pred             EEEEeCchHhcCcH------HHHHHHHHHHHhcCCCCEEEE
Confidence            99986441110000      012466678899999999985

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.20  E-value=1.8e-10  Score=101.22  Aligned_cols=136  Identities=10%  Similarity=0.022  Sum_probs=91.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~  143 (252)
                      +..|||+|||+|..+..+|... +...++|+|+++.+++.+++++...      ++.|+.++++|+.. +....+ ...+
T Consensus       103 g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~------g~~~v~~~~~D~~~-~~~~~~~~~~f  175 (309)
T 2b9e_A          103 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLA-VSPSDPRYHEV  175 (309)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGG-SCTTCGGGTTE
T ss_pred             CCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc------CCCeEEEEeCChHh-cCccccccCCC
Confidence            5689999999999999999974 5678999999999999999988664      77899999999874 322111 1579


Q ss_pred             cEEEEeCCCC----cccccc-------cccc-----ccCHHHHHHHHHhhcCCcEEEEEeCc--hHHHHHH-HHHHhcCC
Q 025470          144 TKMFFLFPDP----HFKEKN-------HRRR-----VISPHLLDEYAYVLGVGGIIYTITDV--EELGDWM-RSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP----~~k~~h-------~krr-----~~~~~~l~~~~~~LkpgG~l~~~td~--~~~~~~~-~~~~~~~~  204 (252)
                      |.|+++.|.-    +.+...       ...+     -.+..+|+.+.++|+ ||+|+..|=.  .+-.+.. ...+..++
T Consensus       176 D~Vl~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs~~~~Ene~~v~~~l~~~~  254 (309)
T 2b9e_A          176 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCSLCQEENEDVVRDALQQNP  254 (309)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             CEEEEcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCCCChHHhHHHHHHHHHhCC
Confidence            9999875531    100000       0011     123567888888887 9999887632  2222333 33345566


Q ss_pred             C-cccc
Q 025470          205 M-FEAL  209 (252)
Q Consensus       205 ~-~~~~  209 (252)
                      . |+.+
T Consensus       255 ~~~~~~  260 (309)
T 2b9e_A          255 GAFRLA  260 (309)
T ss_dssp             TTEEEC
T ss_pred             CcEEEe
Confidence            5 6544

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=99.20  E-value=5.4e-11  Score=101.84  Aligned_cols=118  Identities=16%  Similarity=0.191  Sum_probs=81.5

Q ss_pred             CceEEEEcCcccHHHHHHHHH-------CCC-----CeEEEEecCH---hHHH-----------HHHHHHHHHhh-----
Q 025470           66 KIQFADIGCGFGGLLISLSTL-------FPE-----VLMIGMELRD---KVTE-----------YVKERILALRV-----  114 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-------~p~-----~~~iGiDis~---~~i~-----------~a~~~~~~~~~-----  114 (252)
                      ..+|||||||+|..++.+++.       .|+     ..|+++|..+   +.+.           .|+..+.....     
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g~  140 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  140 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSEE
T ss_pred             CCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccch
Confidence            469999999999999887765       674     5899999887   4444           33333221000     


Q ss_pred             ---cCCCCcccEEEEeCCcccccCccCCC---CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          115 ---SNPGQYQNISVVRTNSMKYIPNYFEK---GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       115 ---~~~~~~~nv~~~~~da~~~l~~~~~~---~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                         .-..+..|++++.+|+.+.++.. +.   +.+|.|++   |+|..+++.  ++.+..+++.++++|+|||+|..-|-
T Consensus       141 ~r~~~~~~~~~l~l~~GDa~~~l~~~-~~~~~~~~D~ifl---D~fsp~~~p--~lw~~~~l~~l~~~L~pGG~l~tysa  214 (257)
T 2qy6_A          141 HRLLLDEGRVTLDLWFGDINELISQL-DDSLNQKVDAWFL---DGFAPAKNP--DMWTQNLFNAMARLARPGGTLATFTS  214 (257)
T ss_dssp             EEEEEC--CEEEEEEESCHHHHGGGS-CGGGTTCEEEEEE---CSSCTTTCG--GGCCHHHHHHHHHHEEEEEEEEESCC
T ss_pred             hheeccCCceEEEEEECcHHHHHhhc-ccccCCeEEEEEE---CCCCcccCh--hhcCHHHHHHHHHHcCCCcEEEEEeC
Confidence               00123468999999998767643 22   26788776   677555543  56678999999999999999986554


Q ss_pred             c
Q 025470          189 V  189 (252)
Q Consensus       189 ~  189 (252)
                      .
T Consensus       215 a  215 (257)
T 2qy6_A          215 A  215 (257)
T ss_dssp             B
T ss_pred             C
Confidence            3

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=99.19  E-value=4.7e-11  Score=106.58  Aligned_cols=103  Identities=18%  Similarity=0.189  Sum_probs=76.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++++|+..++..|. +.+++.|++++.      ..+.++|.++.+|+.+   ..++  ..|.
T Consensus       180 ~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~------~~~~~rv~~~~gD~~~---~~~~--~~D~  247 (353)
T 4a6d_A          180 FPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFS------FQEEEQIDFQEGDFFK---DPLP--EADL  247 (353)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSC------C--CCSEEEEESCTTT---SCCC--CCSE
T ss_pred             CCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhh------hcccCceeeecCcccc---CCCC--CceE
Confidence            45899999999999999999999999999997 778887776542      2356799999999753   2232  4588


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +++..-- -|+...       ...+|+++++.|+|||+|+|.-
T Consensus       248 ~~~~~vlh~~~d~~-------~~~iL~~~~~al~pgg~lli~e  283 (353)
T 4a6d_A          248 YILARVLHDWADGK-------CSHLLERIYHTCKPGGGILVIE  283 (353)
T ss_dssp             EEEESSGGGSCHHH-------HHHHHHHHHHHCCTTCEEEEEE
T ss_pred             EEeeeecccCCHHH-------HHHHHHHHHhhCCCCCEEEEEE
Confidence            8764321 122110       1258999999999999999864

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.19  E-value=4.2e-11  Score=103.47  Aligned_cols=111  Identities=13%  Similarity=0.203  Sum_probs=75.3

Q ss_pred             ceEEEEcCcccH----HHHHHHHHCC----CCeEEEEecCHhHHHHHHHHHHHHhhc---------------C--CCC--
Q 025470           67 IQFADIGCGFGG----LLISLSTLFP----EVLMIGMELRDKVTEYVKERILALRVS---------------N--PGQ--  119 (252)
Q Consensus        67 ~~vLDIGcG~G~----~~~~lA~~~p----~~~~iGiDis~~~i~~a~~~~~~~~~~---------------~--~~~--  119 (252)
                      ..|+|+|||+|.    +++.+++..+    +..++|+|+|+.|++.|++++......               .  ..+  
T Consensus       107 ~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~~~  186 (274)
T 1af7_A          107 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV  186 (274)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred             cEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCCce
Confidence            489999999999    5666676644    468999999999999998753100000               0  011  


Q ss_pred             ------cccEEEEeCCcccccCccCC-CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          120 ------YQNISVVRTNSMKYIPNYFE-KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       120 ------~~nv~~~~~da~~~l~~~~~-~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                            ..+|.|.++|+.+ .+  ++ .+.+|.|++..---++..      .....+++.+++.|+|||.|++-
T Consensus       187 ~v~~~lr~~V~F~~~dl~~-~~--~~~~~~fDlI~crnvliyf~~------~~~~~vl~~~~~~L~pgG~L~lg  251 (274)
T 1af7_A          187 RVRQELANYVEFSSVNLLE-KQ--YNVPGPFDAIFCRNVMIYFDK------TTQEDILRRFVPLLKPDGLLFAG  251 (274)
T ss_dssp             EECHHHHTTEEEEECCTTC-SS--CCCCCCEEEEEECSSGGGSCH------HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             eechhhcccCeEEecccCC-CC--CCcCCCeeEEEECCchHhCCH------HHHHHHHHHHHHHhCCCcEEEEE
Confidence                  0369999999864 22  33 578999997432111110      11246999999999999999883

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=99.18  E-value=8.1e-11  Score=105.49  Aligned_cols=96  Identities=16%  Similarity=0.279  Sum_probs=73.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++++|+..++++|+ +.+++.|+            ..+++.++.+|+.+  +  ++.+  |.
T Consensus       202 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~D~~~--~--~p~~--D~  262 (364)
T 3p9c_A          202 LGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP------------QFPGVTHVGGDMFK--E--VPSG--DT  262 (364)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------------CCTTEEEEECCTTT--C--CCCC--SE
T ss_pred             CCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh------------hcCCeEEEeCCcCC--C--CCCC--CE
Confidence            46899999999999999999999999999999 77665432            24689999999863  2  4444  88


Q ss_pred             EEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++...-. |...       ....+|++++++|+|||+|++..
T Consensus       263 v~~~~vlh~~~d~-------~~~~~L~~~~~~L~pgG~l~i~e  298 (364)
T 3p9c_A          263 ILMKWILHDWSDQ-------HCATLLKNCYDALPAHGKVVLVQ  298 (364)
T ss_dssp             EEEESCGGGSCHH-------HHHHHHHHHHHHSCTTCEEEEEE
T ss_pred             EEehHHhccCCHH-------HHHHHHHHHHHHcCCCCEEEEEE
Confidence            88754322 2111       01258999999999999999864

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.17  E-value=9.4e-12  Score=107.06  Aligned_cols=108  Identities=11%  Similarity=0.034  Sum_probs=70.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE--eCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV--RTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~--~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|.++..+|+.   ..|+|||+++ |+..+.+.  .. .....+ .|+.++  ++|+..     ++++++
T Consensus        75 g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~--~~-~~~~~~-~~v~~~~~~~D~~~-----l~~~~f  141 (265)
T 2oxt_A           75 TGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEV--PR-ITESYG-WNIVKFKSRVDIHT-----LPVERT  141 (265)
T ss_dssp             CEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCC--CC-CCCBTT-GGGEEEECSCCTTT-----SCCCCC
T ss_pred             CCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhh--hh-hhhccC-CCeEEEecccCHhH-----CCCCCC
Confidence            458999999999999999988   5799999998 43211100  00 000001 279999  899863     346789


Q ss_pred             cEEEEeCCCCcccccc-ccccccCHHHHHHHHHhhcCCc--EEEEEeCc
Q 025470          144 TKMFFLFPDPHFKEKN-HRRRVISPHLLDEYAYVLGVGG--IIYTITDV  189 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h-~krr~~~~~~l~~~~~~LkpgG--~l~~~td~  189 (252)
                      |.|++++. ....... ...+  ...+|+.+.++|||||  .|++.+-.
T Consensus       142 D~V~sd~~-~~~~~~~~d~~~--~l~~L~~~~r~LkpGG~~~fv~kv~~  187 (265)
T 2oxt_A          142 DVIMCDVG-ESSPKWSVESER--TIKILELLEKWKVKNPSADFVVKVLC  187 (265)
T ss_dssp             SEEEECCC-CCCSCHHHHHHH--HHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred             cEEEEeCc-ccCCccchhHHH--HHHHHHHHHHHhccCCCeEEEEEeCC
Confidence            99999765 2110000 0000  0127899999999999  99987643

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.17  E-value=1.1e-11  Score=112.77  Aligned_cols=101  Identities=15%  Similarity=0.181  Sum_probs=73.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE--EEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS--VVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~--~~~~da~~~l~~~~~~~s~  143 (252)
                      ...|||||||+|.++..+++.  +..++|+|+|+.+++.|+++          +.++..  +...++. .++  ++++++
T Consensus       108 ~~~VLDiGcG~G~~~~~l~~~--g~~v~gvD~s~~~~~~a~~~----------~~~~~~~~~~~~~~~-~l~--~~~~~f  172 (416)
T 4e2x_A          108 DPFIVEIGCNDGIMLRTIQEA--GVRHLGFEPSSGVAAKAREK----------GIRVRTDFFEKATAD-DVR--RTEGPA  172 (416)
T ss_dssp             SCEEEEETCTTTTTHHHHHHT--TCEEEEECCCHHHHHHHHTT----------TCCEECSCCSHHHHH-HHH--HHHCCE
T ss_pred             CCEEEEecCCCCHHHHHHHHc--CCcEEEECCCHHHHHHHHHc----------CCCcceeeechhhHh-hcc--cCCCCE
Confidence            568999999999999999997  55899999999999877642          222221  2223332 233  456899


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |.|+++..-.+...        ...+++++.++|||||.+++.+.+
T Consensus       173 D~I~~~~vl~h~~d--------~~~~l~~~~r~LkpgG~l~i~~~~  210 (416)
T 4e2x_A          173 NVIYAANTLCHIPY--------VQSVLEGVDALLAPDGVFVFEDPY  210 (416)
T ss_dssp             EEEEEESCGGGCTT--------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEEECChHHhcCC--------HHHHHHHHHHHcCCCeEEEEEeCC
Confidence            99998754322211        136999999999999999998755

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.16  E-value=1.3e-10  Score=105.24  Aligned_cols=115  Identities=17%  Similarity=0.191  Sum_probs=83.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC--------------------------------------CeEEEEecCHhHHHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE--------------------------------------VLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~--------------------------------------~~~iGiDis~~~i~~a~~  107 (252)
                      ...|||+|||+|.+++.+|....+                                      ..++|+|+++.|++.|+.
T Consensus       202 ~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar~  281 (393)
T 3k0b_A          202 DRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQ  281 (393)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHHH
Confidence            457999999999999999886433                                      469999999999999999


Q ss_pred             HHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcC--CcEEE
Q 025470          108 RILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV--GGIIY  184 (252)
Q Consensus       108 ~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp--gG~l~  184 (252)
                      ++...      ++. ++.++++|+.+ ++   .+.++|.|++|.|--   .+.... -....+.+.+.+.||+  ||.++
T Consensus       282 Na~~~------gl~~~I~~~~~D~~~-~~---~~~~fD~Iv~NPPYg---~rl~~~-~~l~~ly~~lg~~lk~~~g~~~~  347 (393)
T 3k0b_A          282 NAVEA------GLGDLITFRQLQVAD-FQ---TEDEYGVVVANPPYG---ERLEDE-EAVRQLYREMGIVYKRMPTWSVY  347 (393)
T ss_dssp             HHHHT------TCTTCSEEEECCGGG-CC---CCCCSCEEEECCCCC---CSHHHH-HHHHHHHHHHHHHHHTCTTCEEE
T ss_pred             HHHHc------CCCCceEEEECChHh-CC---CCCCCCEEEECCCCc---cccCCc-hhHHHHHHHHHHHHhcCCCCEEE
Confidence            88664      665 59999999874 32   245899999986521   111000 0012356666777776  99999


Q ss_pred             EEeCchHHHH
Q 025470          185 TITDVEELGD  194 (252)
Q Consensus       185 ~~td~~~~~~  194 (252)
                      +.|.+.++..
T Consensus       348 iit~~~~l~~  357 (393)
T 3k0b_A          348 VLTSYELFEE  357 (393)
T ss_dssp             EEECCTTHHH
T ss_pred             EEECCHHHHH
Confidence            9998877654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.16  E-value=1.2e-11  Score=107.00  Aligned_cols=105  Identities=13%  Similarity=0.068  Sum_probs=70.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEE--eCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVV--RTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~--~~da~~~l~~~~~~~s  142 (252)
                      ...|||||||+|.++..+|++   ..|+|||+++ |+..+.++     ....... .|+.++  ++|+.. +    ++++
T Consensus        83 g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~-----~~~~~~~~~~v~~~~~~~D~~~-l----~~~~  148 (276)
T 2wa2_A           83 KGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEK-----PRLVETFGWNLITFKSKVDVTK-M----EPFQ  148 (276)
T ss_dssp             CEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCC-----CCCCCCTTGGGEEEECSCCGGG-C----CCCC
T ss_pred             CCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhc-----hhhhhhcCCCeEEEeccCcHhh-C----CCCC
Confidence            568999999999999999998   5799999998 53222110     0000011 289999  999863 3    3678


Q ss_pred             ccEEEEeCCCCccc---cccccccccCHHHHHHHHHhhcCCc--EEEEEeCc
Q 025470          143 LTKMFFLFPDPHFK---EKNHRRRVISPHLLDEYAYVLGVGG--IIYTITDV  189 (252)
Q Consensus       143 ~d~i~~~fpdP~~k---~~h~krr~~~~~~l~~~~~~LkpgG--~l~~~td~  189 (252)
                      +|.|++++. ....   ..+.  +  ...+|+.+.++|||||  .|++.+-.
T Consensus       149 fD~Vvsd~~-~~~~~~~~d~~--~--~l~~L~~~~r~LkpGG~~~~v~~~~~  195 (276)
T 2wa2_A          149 ADTVLCDIG-ESNPTAAVEAS--R--TLTVLNVISRWLEYNQGCGFCVKVLN  195 (276)
T ss_dssp             CSEEEECCC-CCCSCHHHHHH--H--HHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred             cCEEEECCC-cCCCchhhhHH--H--HHHHHHHHHHHhccCCCcEEEEEeCC
Confidence            999999865 2210   0000  0  0127899999999999  99886533

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.16  E-value=3.1e-10  Score=102.60  Aligned_cols=115  Identities=15%  Similarity=0.189  Sum_probs=85.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC--------------------------------------CeEEEEecCHhHHHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE--------------------------------------VLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~--------------------------------------~~~iGiDis~~~i~~a~~  107 (252)
                      ...|||+|||+|.+++.+|....+                                      ..++|+|+++.+++.|+.
T Consensus       196 ~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~Ar~  275 (385)
T 3ldu_A          196 GRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIARE  275 (385)
T ss_dssp             TSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHH
Confidence            457999999999999999887322                                      579999999999999999


Q ss_pred             HHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcC--CcEEE
Q 025470          108 RILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV--GGIIY  184 (252)
Q Consensus       108 ~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp--gG~l~  184 (252)
                      ++...      ++. ++.|.++|+.+ +.   .+.++|.|++|.|--  . +... .-.-..+.+.+.++|++  ||.++
T Consensus       276 Na~~~------gl~~~i~~~~~D~~~-l~---~~~~~D~Iv~NPPyg--~-rl~~-~~~l~~ly~~lg~~lk~~~g~~~~  341 (385)
T 3ldu_A          276 NAEIA------GVDEYIEFNVGDATQ-FK---SEDEFGFIITNPPYG--E-RLED-KDSVKQLYKELGYAFRKLKNWSYY  341 (385)
T ss_dssp             HHHHH------TCGGGEEEEECCGGG-CC---CSCBSCEEEECCCCC--C-SHHH-HHHHHHHHHHHHHHHHTSBSCEEE
T ss_pred             HHHHc------CCCCceEEEECChhh-cC---cCCCCcEEEECCCCc--C-ccCC-HHHHHHHHHHHHHHHhhCCCCEEE
Confidence            98765      554 79999999875 32   246899999986622  1 1100 00112466777778887  99999


Q ss_pred             EEeCchHHHH
Q 025470          185 TITDVEELGD  194 (252)
Q Consensus       185 ~~td~~~~~~  194 (252)
                      +.|.+.++..
T Consensus       342 iit~~~~l~~  351 (385)
T 3ldu_A          342 LITSYEDFEY  351 (385)
T ss_dssp             EEESCTTHHH
T ss_pred             EEECCHHHHH
Confidence            9998776654

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=99.16  E-value=5.6e-11  Score=106.58  Aligned_cols=96  Identities=17%  Similarity=0.219  Sum_probs=73.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++++|+..++++|+ +.+++.|+            ..+++.++.+|+.+  +  ++.  +|.
T Consensus       210 ~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~--~--~~~--~D~  270 (372)
T 1fp1_D          210 ISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP------------PLSGIEHVGGDMFA--S--VPQ--GDA  270 (372)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------------CCTTEEEEECCTTT--C--CCC--EEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh------------hcCCCEEEeCCccc--C--CCC--CCE
Confidence            45899999999999999999999999999999 88775432            24679999999863  2  333  899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |++...-.+....      ....+|+++.++|+|||+|++.
T Consensus       271 v~~~~~lh~~~d~------~~~~~l~~~~~~L~pgG~l~i~  305 (372)
T 1fp1_D          271 MILKAVCHNWSDE------KCIEFLSNCHKALSPNGKVIIV  305 (372)
T ss_dssp             EEEESSGGGSCHH------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             EEEecccccCCHH------HHHHHHHHHHHhcCCCCEEEEE
Confidence            9986542211110      0126999999999999999986

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=99.16  E-value=9.7e-11  Score=104.22  Aligned_cols=96  Identities=15%  Similarity=0.181  Sum_probs=74.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.+|+..++|+|+ +.+++.|+            ..+++.++.+|+.+.    ++  .+|.
T Consensus       189 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~~----~p--~~D~  249 (352)
T 1fp2_A          189 LESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------------GSNNLTYVGGDMFTS----IP--NADA  249 (352)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------------CBTTEEEEECCTTTC----CC--CCSE
T ss_pred             CceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc------------cCCCcEEEeccccCC----CC--CccE
Confidence            45899999999999999999999999999999 88876442            245799999998532    33  2899


Q ss_pred             EEEeCCCC-ccccccccccccCHHHHHHHHHhhcC---CcEEEEEe
Q 025470          146 MFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGV---GGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~Lkp---gG~l~~~t  187 (252)
                      |++...-. |...       ....+|+++.++|||   ||+|++..
T Consensus       250 v~~~~~lh~~~d~-------~~~~~l~~~~~~L~p~~~gG~l~i~e  288 (352)
T 1fp2_A          250 VLLKYILHNWTDK-------DCLRILKKCKEAVTNDGKRGKVTIID  288 (352)
T ss_dssp             EEEESCGGGSCHH-------HHHHHHHHHHHHHSGGGCCCEEEEEE
T ss_pred             EEeehhhccCCHH-------HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            98865422 2110       012699999999999   99998864

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=99.15  E-value=3.8e-11  Score=106.74  Aligned_cols=100  Identities=18%  Similarity=0.202  Sum_probs=72.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC-cccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ-YQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~-~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++.+|+..++++|++ .++.  +.++      ...+ .+++.++.+|+.+    .++  ++|
T Consensus       185 ~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~------~~~~~~~~v~~~~~d~~~----~~p--~~D  249 (348)
T 3lst_A          185 TGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRL------DAPDVAGRWKVVEGDFLR----EVP--HAD  249 (348)
T ss_dssp             SEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCC------CCGGGTTSEEEEECCTTT----CCC--CCS
T ss_pred             CceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccc------cccCCCCCeEEEecCCCC----CCC--CCc
Confidence            468999999999999999999999999999994 4332  1111      1112 3479999999742    234  899


Q ss_pred             EEEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++...-. |+..       ....+|++++++|||||+|++..
T Consensus       250 ~v~~~~vlh~~~d~-------~~~~~L~~~~~~LkpgG~l~i~e  286 (348)
T 3lst_A          250 VHVLKRILHNWGDE-------DSVRILTNCRRVMPAHGRVLVID  286 (348)
T ss_dssp             EEEEESCGGGSCHH-------HHHHHHHHHHHTCCTTCEEEEEE
T ss_pred             EEEEehhccCCCHH-------HHHHHHHHHHHhcCCCCEEEEEE
Confidence            998865322 2110       01269999999999999999865

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=99.15  E-value=1.2e-10  Score=100.31  Aligned_cols=124  Identities=11%  Similarity=0.117  Sum_probs=80.6

Q ss_pred             ceEEEEcCcc--cHHHHHHHH-HCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC----
Q 025470           67 IQFADIGCGF--GGLLISLST-LFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE----  139 (252)
Q Consensus        67 ~~vLDIGcG~--G~~~~~lA~-~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~----  139 (252)
                      ..|||||||.  |..+..+|+ ..|+..++|||.|+.|++.|+.++..      ....++.|+++|+.+ +...+.    
T Consensus        80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~------~~~~~~~~v~aD~~~-~~~~l~~~~~  152 (277)
T 3giw_A           80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS------TPEGRTAYVEADMLD-PASILDAPEL  152 (277)
T ss_dssp             CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC------CSSSEEEEEECCTTC-HHHHHTCHHH
T ss_pred             CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc------CCCCcEEEEEecccC-hhhhhccccc
Confidence            4899999997  445566655 57999999999999999999876521      234589999999874 211110    


Q ss_pred             CCccc-----EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhc
Q 025470          140 KGQLT-----KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLEN  202 (252)
Q Consensus       140 ~~s~d-----~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~  202 (252)
                      .+++|     .|+++.--.|..... +    -..+++.+.+.|+|||.|++.+-.    .+....+.+....
T Consensus       153 ~~~~D~~~p~av~~~avLH~l~d~~-~----p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~  219 (277)
T 3giw_A          153 RDTLDLTRPVALTVIAIVHFVLDED-D----AVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA  219 (277)
T ss_dssp             HTTCCTTSCCEEEEESCGGGSCGGG-C----HHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             ccccCcCCcchHHhhhhHhcCCchh-h----HHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh
Confidence            12333     466655444432110 0    025999999999999999987422    2334444444443

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.15  E-value=4.4e-10  Score=101.50  Aligned_cols=115  Identities=11%  Similarity=0.136  Sum_probs=84.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC--------------------------------------CeEEEEecCHhHHHHHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE--------------------------------------VLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~--------------------------------------~~~iGiDis~~~i~~a~~  107 (252)
                      ...+||.+||+|.+++..|....+                                      ..++|+|+++.|++.|+.
T Consensus       195 ~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar~  274 (384)
T 3ldg_A          195 DKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIARK  274 (384)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHHH
T ss_pred             CCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHHH
Confidence            457999999999999999876433                                      469999999999999999


Q ss_pred             HHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcC--CcEEE
Q 025470          108 RILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV--GGIIY  184 (252)
Q Consensus       108 ~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp--gG~l~  184 (252)
                      |+...      ++. ++.++++|+.+ ++   .+.++|.|++|.|--   .+... .-....+.+.+.+.||+  ||.++
T Consensus       275 Na~~~------gl~~~I~~~~~D~~~-l~---~~~~fD~Iv~NPPYG---~rl~~-~~~l~~ly~~lg~~lk~~~g~~~~  340 (384)
T 3ldg_A          275 NAREV------GLEDVVKLKQMRLQD-FK---TNKINGVLISNPPYG---ERLLD-DKAVDILYNEMGETFAPLKTWSQF  340 (384)
T ss_dssp             HHHHT------TCTTTEEEEECCGGG-CC---CCCCSCEEEECCCCT---TTTSC-HHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred             HHHHc------CCCCceEEEECChHH-CC---ccCCcCEEEECCchh---hccCC-HHHHHHHHHHHHHHHhhCCCcEEE
Confidence            88764      665 49999999874 33   245899999886522   11100 00113466677778876  99999


Q ss_pred             EEeCchHHHH
Q 025470          185 TITDVEELGD  194 (252)
Q Consensus       185 ~~td~~~~~~  194 (252)
                      +.|.+.++..
T Consensus       341 iit~~~~l~~  350 (384)
T 3ldg_A          341 ILTNDTDFEQ  350 (384)
T ss_dssp             EEESCTTHHH
T ss_pred             EEECCHHHHH
Confidence            9998777644

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.15  E-value=1.1e-10  Score=101.98  Aligned_cols=76  Identities=24%  Similarity=0.334  Sum_probs=59.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  ...++|||+++.+++.|++++...      +.+|+.++++|+.. ++    ..++|.
T Consensus        43 ~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~~~------~~~~v~~~~~D~~~-~~----~~~~D~  109 (299)
T 2h1r_A           43 SDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCLYE------GYNNLEVYEGDAIK-TV----FPKFDV  109 (299)
T ss_dssp             TCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHHHT------TCCCEEC----CCS-SC----CCCCSE
T ss_pred             cCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHc------CCCceEEEECchhh-CC----cccCCE
Confidence            458999999999999999988  568999999999999998877542      56799999999863 32    347999


Q ss_pred             EEEeCCCCc
Q 025470          146 MFFLFPDPH  154 (252)
Q Consensus       146 i~~~fpdP~  154 (252)
                      |+++.|-.|
T Consensus       110 Vv~n~py~~  118 (299)
T 2h1r_A          110 CTANIPYKI  118 (299)
T ss_dssp             EEEECCGGG
T ss_pred             EEEcCCccc
Confidence            999987554

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=99.14  E-value=6.9e-11  Score=97.36  Aligned_cols=101  Identities=18%  Similarity=0.182  Sum_probs=73.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++     ..++|+|+++.                     ++.++.+|+.. ++  ++++++|.
T Consensus        68 ~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~---------------------~~~~~~~d~~~-~~--~~~~~fD~  118 (215)
T 2zfu_A           68 SLVVADFGCGDCRLASSIR-----NPVHCFDLASL---------------------DPRVTVCDMAQ-VP--LEDESVDV  118 (215)
T ss_dssp             TSCEEEETCTTCHHHHHCC-----SCEEEEESSCS---------------------STTEEESCTTS-CS--CCTTCEEE
T ss_pred             CCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC---------------------CceEEEecccc-CC--CCCCCEeE
Confidence            3589999999999988874     57999999875                     45678888764 43  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH--HHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE--LGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~--~~~~~~~~~~~~~  204 (252)
                      |++.+.-.+.         ....+++++.++|+|||.+++..-...  -.+.+.+.+.+.+
T Consensus       119 v~~~~~l~~~---------~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~l~~~G  170 (215)
T 2zfu_A          119 AVFCLSLMGT---------NIRDFLEEANRVLKPGGLLKVAEVSSRFEDVRTFLRAVTKLG  170 (215)
T ss_dssp             EEEESCCCSS---------CHHHHHHHHHHHEEEEEEEEEEECGGGCSCHHHHHHHHHHTT
T ss_pred             EEEehhcccc---------CHHHHHHHHHHhCCCCeEEEEEEcCCCCCCHHHHHHHHHHCC
Confidence            9987654321         124699999999999999999764432  2344455555554

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.14  E-value=1.6e-10  Score=104.61  Aligned_cols=104  Identities=13%  Similarity=0.079  Sum_probs=84.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc--EEEEeCCcccccC-ccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQN--ISVVRTNSMKYIP-NYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n--v~~~~~da~~~l~-~~~~~~  141 (252)
                      +..|||++||+|.+++.+|.+.++ ..++++|+++.+++.+++|+...      ++.|  +.++++|+.+.+. ..  ..
T Consensus        53 g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~N------gl~~~~v~v~~~Da~~~l~~~~--~~  124 (392)
T 3axs_A           53 PVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLN------NIPEDRYEIHGMEANFFLRKEW--GF  124 (392)
T ss_dssp             CEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHT------TCCGGGEEEECSCHHHHHHSCC--SS
T ss_pred             CCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHh------CCCCceEEEEeCCHHHHHHHhh--CC
Confidence            458999999999999999998654 58999999999999999998764      6766  9999999986554 32  45


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .+|.|+++   |. .        ....++..+.+.|++||.|++....
T Consensus       125 ~fD~V~lD---P~-g--------~~~~~l~~a~~~Lk~gGll~~t~t~  160 (392)
T 3axs_A          125 GFDYVDLD---PF-G--------TPVPFIESVALSMKRGGILSLTATD  160 (392)
T ss_dssp             CEEEEEEC---CS-S--------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred             CCcEEEEC---CC-c--------CHHHHHHHHHHHhCCCCEEEEEecc
Confidence            79999885   42 1        0136999999999999999887643

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=99.13  E-value=2.8e-11  Score=109.19  Aligned_cols=94  Identities=16%  Similarity=0.218  Sum_probs=71.6

Q ss_pred             CceEEEEcCc------ccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC
Q 025470           66 KIQFADIGCG------FGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG------~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~  138 (252)
                      ...|||||||      +|..++.+++. +|+..++|||+|+.|.         .      ..+|+.|+++|+.+ ++  +
T Consensus       217 ~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~------~~~rI~fv~GDa~d-lp--f  278 (419)
T 3sso_A          217 QVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------V------DELRIRTIQGDQND-AE--F  278 (419)
T ss_dssp             CCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------G------CBTTEEEEECCTTC-HH--H
T ss_pred             CCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------h------cCCCcEEEEecccc-cc--h
Confidence            4589999999      67777777776 5899999999999862         1      34689999999864 33  2


Q ss_pred             C------CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          139 E------KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       139 ~------~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .      +++||.|+.+.. .+..        -...+|+++.++|||||.+++.
T Consensus       279 ~~~l~~~d~sFDlVisdgs-H~~~--------d~~~aL~el~rvLKPGGvlVi~  323 (419)
T 3sso_A          279 LDRIARRYGPFDIVIDDGS-HINA--------HVRTSFAALFPHVRPGGLYVIE  323 (419)
T ss_dssp             HHHHHHHHCCEEEEEECSC-CCHH--------HHHHHHHHHGGGEEEEEEEEEE
T ss_pred             hhhhhcccCCccEEEECCc-ccch--------hHHHHHHHHHHhcCCCeEEEEE
Confidence            2      578999987542 1111        1236899999999999999985

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=99.13  E-value=7.6e-11  Score=103.34  Aligned_cols=104  Identities=12%  Similarity=0.065  Sum_probs=70.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEec----CHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMEL----RDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDi----s~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~  140 (252)
                      ...|||||||+|.++..+|++   ..|+|||+    ++.+++.+.        ....+.+++.++++ |+.. +    ++
T Consensus        83 g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~--------~~~~~~~~v~~~~~~D~~~-l----~~  146 (305)
T 2p41_A           83 EGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIP--------MSTYGWNLVRLQSGVDVFF-I----PP  146 (305)
T ss_dssp             CEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCC--------CCSTTGGGEEEECSCCTTT-S----CC
T ss_pred             CCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHH--------hhhcCCCCeEEEecccccc-C----Cc
Confidence            458999999999999999998   47999999    554331110        01123478999999 8753 3    35


Q ss_pred             CcccEEEEeCCCC--ccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          141 GQLTKMFFLFPDP--HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       141 ~s~d~i~~~fpdP--~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .++|.|+++++..  .....+.  +.  ..+|..+.++|||||.|++.+-.
T Consensus       147 ~~fD~V~sd~~~~~g~~~~d~~--~~--l~~L~~~~~~LkpGG~~v~kv~~  193 (305)
T 2p41_A          147 ERCDTLLCDIGESSPNPTVEAG--RT--LRVLNLVENWLSNNTQFCVKVLN  193 (305)
T ss_dssp             CCCSEEEECCCCCCSSHHHHHH--HH--HHHHHHHHHHCCTTCEEEEEESC
T ss_pred             CCCCEEEECCccccCcchhhHH--HH--HHHHHHHHHHhCCCCEEEEEeCC
Confidence            6899999976532  1000010  00  13788899999999999987643

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=99.11  E-value=8.1e-11  Score=106.76  Aligned_cols=119  Identities=13%  Similarity=0.129  Sum_probs=84.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||+|||+|.++..++++. +..+++|+|+++.+++.|               .++.++++|+.. .   .+.+.+|
T Consensus        40 ~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------------~~~~~~~~D~~~-~---~~~~~fD  100 (421)
T 2ih2_A           40 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------------PWAEGILADFLL-W---EPGEAFD  100 (421)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------TTEEEEESCGGG-C---CCSSCEE
T ss_pred             CCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------CCCcEEeCChhh-c---CccCCCC
Confidence            3489999999999999999986 678999999999876433               478999999864 2   2357899


Q ss_pred             EEEEeCCCCccccc--------ccccc-------------ccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHH
Q 025470          145 KMFFLFPDPHFKEK--------NHRRR-------------VISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSC  199 (252)
Q Consensus       145 ~i~~~fpdP~~k~~--------h~krr-------------~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~  199 (252)
                      .|+.|.|--.....        ...+.             -....|++.+.++|+|||.+.+.+...    .....+.+.
T Consensus       101 ~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~~~~~~lr~~  180 (421)
T 2ih2_A          101 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREF  180 (421)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHH
T ss_pred             EEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcCccHHHHHHH
Confidence            99998653221110        00000             012378999999999999999988654    234556666


Q ss_pred             HhcC
Q 025470          200 LENH  203 (252)
Q Consensus       200 ~~~~  203 (252)
                      +.+.
T Consensus       181 l~~~  184 (421)
T 2ih2_A          181 LARE  184 (421)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5544

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.09  E-value=4.1e-10  Score=101.30  Aligned_cols=103  Identities=15%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +.+|||||||+|.+++..|+.. ...|+|||.|+ +++.|++++...      ++ .+|.++++|+.+ +.  + +..+|
T Consensus        84 ~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~n------~~~~~i~~i~~~~~~-~~--l-pe~~D  151 (376)
T 4hc4_A           84 GKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRFN------GLEDRVHVLPGPVET-VE--L-PEQVD  151 (376)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHHT------TCTTTEEEEESCTTT-CC--C-SSCEE
T ss_pred             CCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHHc------CCCceEEEEeeeeee-ec--C-Ccccc
Confidence            4589999999999988777764 35799999996 778888776553      55 469999999874 43  3 46799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .|+...-+-..   ...  -..+.++....++|||||.++.
T Consensus       152 vivsE~~~~~l---~~e--~~l~~~l~a~~r~Lkp~G~~iP  187 (376)
T 4hc4_A          152 AIVSEWMGYGL---LHE--SMLSSVLHARTKWLKEGGLLLP  187 (376)
T ss_dssp             EEECCCCBTTB---TTT--CSHHHHHHHHHHHEEEEEEEES
T ss_pred             EEEeecccccc---ccc--chhhhHHHHHHhhCCCCceECC
Confidence            98863221110   000  0224688888899999998753

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.07  E-value=9.4e-11  Score=111.01  Aligned_cols=100  Identities=12%  Similarity=0.121  Sum_probs=75.9

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .|||||||.|.++..||+.  +..|+|||+++.+|+.|+....+      .+..||.|.++++.+ +...+.+++||.|+
T Consensus        69 ~vLDvGCG~G~~~~~la~~--ga~V~giD~~~~~i~~a~~~a~~------~~~~~~~~~~~~~~~-~~~~~~~~~fD~v~  139 (569)
T 4azs_A           69 NVLDLGCAQGFFSLSLASK--GATIVGIDFQQENINVCRALAEE------NPDFAAEFRVGRIEE-VIAALEEGEFDLAI  139 (569)
T ss_dssp             EEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHT------STTSEEEEEECCHHH-HHHHCCTTSCSEEE
T ss_pred             eEEEECCCCcHHHHHHHhC--CCEEEEECCCHHHHHHHHHHHHh------cCCCceEEEECCHHH-HhhhccCCCccEEE
Confidence            7999999999999999998  77999999999999999876543      355689999999975 43335678999998


Q ss_pred             EeC-----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          148 FLF-----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       148 ~~f-----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..-     +||-           .-..+..+.+.|.++|..++.+
T Consensus       140 ~~e~~ehv~~~~-----------~~~~~~~~~~tl~~~~~~~~~~  173 (569)
T 4azs_A          140 GLSVFHHIVHLH-----------GIDEVKRLLSRLADVTQAVILE  173 (569)
T ss_dssp             EESCHHHHHHHH-----------CHHHHHHHHHHHHHHSSEEEEE
T ss_pred             ECcchhcCCCHH-----------HHHHHHHHHHHhccccceeeEE
Confidence            752     3321           0123445667788888776655

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=99.05  E-value=4.1e-10  Score=100.33  Aligned_cols=97  Identities=15%  Similarity=0.281  Sum_probs=73.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++++|+..++++|+ +.+++.|+            ..+++.++.+|+.+  +  ++  .+|.
T Consensus       194 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~------------~~~~v~~~~~d~~~--~--~~--~~D~  254 (358)
T 1zg3_A          194 LESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT------------GNENLNFVGGDMFK--S--IP--SADA  254 (358)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC------------CCSSEEEEECCTTT--C--CC--CCSE
T ss_pred             CCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc------------cCCCcEEEeCccCC--C--CC--CceE
Confidence            35899999999999999999999999999999 67664332            24679999999763  2  33  4899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcC---CcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV---GGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp---gG~l~~~t  187 (252)
                      |++...-.+....      ....+|+++.++|+|   ||+|++..
T Consensus       255 v~~~~vlh~~~d~------~~~~~l~~~~~~L~p~~~gG~l~i~e  293 (358)
T 1zg3_A          255 VLLKWVLHDWNDE------QSLKILKNSKEAISHKGKDGKVIIID  293 (358)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHTGGGGGGCEEEEEE
T ss_pred             EEEcccccCCCHH------HHHHHHHHHHHhCCCCCCCcEEEEEE
Confidence            9987543221110      012699999999999   99999864

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.05  E-value=1.2e-09  Score=95.25  Aligned_cols=75  Identities=20%  Similarity=0.278  Sum_probs=62.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  ...++|||+++.+++.+++++.        +.+|+.++++|+.. ++  +++..+|.
T Consensus        51 ~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~--------~~~~v~vi~gD~l~-~~--~~~~~fD~  117 (295)
T 3gru_A           51 DDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE--------LYNNIEIIWGDALK-VD--LNKLDFNK  117 (295)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH--------HCSSEEEEESCTTT-SC--GGGSCCSE
T ss_pred             cCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc--------cCCCeEEEECchhh-CC--cccCCccE
Confidence            458999999999999999998  5789999999999999988764        24689999999874 33  45567999


Q ss_pred             EEEeCCCC
Q 025470          146 MFFLFPDP  153 (252)
Q Consensus       146 i~~~fpdP  153 (252)
                      |+.|.|--
T Consensus       118 Iv~NlPy~  125 (295)
T 3gru_A          118 VVANLPYQ  125 (295)
T ss_dssp             EEEECCGG
T ss_pred             EEEeCccc
Confidence            99997643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=99.04  E-value=4.1e-10  Score=103.53  Aligned_cols=115  Identities=14%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-------------CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc--cEEEEeCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-------------PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ--NISVVRTNS  130 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-------------p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~~~~da  130 (252)
                      ...|||+|||+|.+++.+++..             +..+++|+|+++.+++.|+.++...      +..  ++.+.++|+
T Consensus       172 ~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~------g~~~~~~~i~~gD~  245 (445)
T 2okc_A          172 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH------GIGTDRSPIVCEDS  245 (445)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT------TCCSSCCSEEECCT
T ss_pred             CCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHh------CCCcCCCCEeeCCC
Confidence            4589999999999999998763             3468999999999999998776542      443  678899997


Q ss_pred             ccccCccCCCCcccEEEEeCCCCcccccc---ccccc------cCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKN---HRRRV------ISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       131 ~~~l~~~~~~~s~d~i~~~fpdP~~k~~h---~krr~------~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      .. .+   ....+|.|+.|.|--......   .+..+      ....|++.+.+.|+|||++.+++...
T Consensus       246 l~-~~---~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p~~  310 (445)
T 2okc_A          246 LE-KE---PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDN  310 (445)
T ss_dssp             TT-SC---CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHH
T ss_pred             CC-Cc---ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEECCc
Confidence            53 22   134899999987632111100   00000      12379999999999999999988653

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.03  E-value=2.7e-10  Score=99.61  Aligned_cols=78  Identities=13%  Similarity=0.252  Sum_probs=63.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC---Cc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK---GQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~---~s  142 (252)
                      ...|||+|||+|.++..+++..|+..++|+|+|+.|++.|++++...      + .|+.++++|+.+ ++..+..   ..
T Consensus        27 g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~------g-~~v~~v~~d~~~-l~~~l~~~g~~~   98 (301)
T 1m6y_A           27 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF------S-DRVSLFKVSYRE-ADFLLKTLGIEK   98 (301)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG------T-TTEEEEECCGGG-HHHHHHHTTCSC
T ss_pred             CCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc------C-CcEEEEECCHHH-HHHHHHhcCCCC
Confidence            45899999999999999999998889999999999999998876432      3 689999999864 4322222   57


Q ss_pred             ccEEEEeCC
Q 025470          143 LTKMFFLFP  151 (252)
Q Consensus       143 ~d~i~~~fp  151 (252)
                      +|.|+++.|
T Consensus        99 ~D~Vl~D~g  107 (301)
T 1m6y_A           99 VDGILMDLG  107 (301)
T ss_dssp             EEEEEEECS
T ss_pred             CCEEEEcCc
Confidence            999998765

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.00  E-value=1.1e-09  Score=93.62  Aligned_cols=75  Identities=17%  Similarity=0.265  Sum_probs=58.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc-cCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY-IPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~-l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..+++..  ..++|||+++.|++.+++++.        ..+|+.++++|+.+. ++..+....+|
T Consensus        30 ~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~--------~~~~v~~i~~D~~~~~~~~~~~~~~~~   99 (255)
T 3tqs_A           30 TDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYN--------QQKNITIYQNDALQFDFSSVKTDKPLR   99 (255)
T ss_dssp             TCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHT--------TCTTEEEEESCTTTCCGGGSCCSSCEE
T ss_pred             cCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHh--------hCCCcEEEEcchHhCCHHHhccCCCeE
Confidence            4589999999999999999984  689999999999999887652        256899999999742 22222234576


Q ss_pred             EEEEeCC
Q 025470          145 KMFFLFP  151 (252)
Q Consensus       145 ~i~~~fp  151 (252)
                       |+.|.|
T Consensus       100 -vv~NlP  105 (255)
T 3tqs_A          100 -VVGNLP  105 (255)
T ss_dssp             -EEEECC
T ss_pred             -EEecCC
Confidence             777875

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.98  E-value=1.1e-09  Score=95.29  Aligned_cols=113  Identities=15%  Similarity=0.184  Sum_probs=74.9

Q ss_pred             CceEEEEcCcc------cHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE-EeCCcccccCcc
Q 025470           66 KIQFADIGCGF------GGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV-VRTNSMKYIPNY  137 (252)
Q Consensus        66 ~~~vLDIGcG~------G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~-~~~da~~~l~~~  137 (252)
                      ...|||||||+      |.  ..+++..+ +..++|+|+++.                   ++|+.+ +++|+.+ ++  
T Consensus        64 g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------------v~~v~~~i~gD~~~-~~--  119 (290)
T 2xyq_A           64 NMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------------VSDADSTLIGDCAT-VH--  119 (290)
T ss_dssp             TCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------------BCSSSEEEESCGGG-CC--
T ss_pred             CCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------------CCCCEEEEECcccc-CC--
Confidence            56899999944      76  55566666 689999999986                   136888 9999864 32  


Q ss_pred             CCCCcccEEEEeCCCCccccc---cccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          138 FEKGQLTKMFFLFPDPHFKEK---NHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       138 ~~~~s~d~i~~~fpdP~~k~~---h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      + ++++|.|+.+.+.++....   +....-....+++++.++|||||.|++..-.......+.+.+...
T Consensus       120 ~-~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~~~~~l~~~l~~~  187 (290)
T 2xyq_A          120 T-ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSWNADLYKLMGHF  187 (290)
T ss_dssp             C-SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSCCHHHHHHHTTE
T ss_pred             c-cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccCCHHHHHHHHHHc
Confidence            2 3689999998765542111   111111224789999999999999999653222223455555544

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.97  E-value=7.4e-10  Score=88.44  Aligned_cols=108  Identities=15%  Similarity=0.052  Sum_probs=76.4

Q ss_pred             CCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc-cCCCC
Q 025470           63 CSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN-YFEKG  141 (252)
Q Consensus        63 ~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~-~~~~~  141 (252)
                      ++++..|||||||.                +++|+|+.|++.|+++.          ..++.++++|+.. ++. .++++
T Consensus        10 ~~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~----------~~~~~~~~~d~~~-~~~~~~~~~   62 (176)
T 2ld4_A           10 ISAGQFVAVVWDKS----------------SPVEALKGLVDKLQALT----------GNEGRVSVENIKQ-LLQSAHKES   62 (176)
T ss_dssp             CCTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHT----------TTTSEEEEEEGGG-GGGGCCCSS
T ss_pred             CCCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhc----------ccCcEEEEechhc-CccccCCCC
Confidence            34567999999996                24999999999887653          1258999999874 441 13688


Q ss_pred             cccEEEEeCCCCcc-ccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH------H---HHHHHHHHhcCCC
Q 025470          142 QLTKMFFLFPDPHF-KEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE------L---GDWMRSCLENHPM  205 (252)
Q Consensus       142 s~d~i~~~fpdP~~-k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~------~---~~~~~~~~~~~~~  205 (252)
                      ++|.|+.++.-.|. ..        ...++++++++|||||.|++......      +   .+.+.+.+...++
T Consensus        63 ~fD~V~~~~~l~~~~~~--------~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf  128 (176)
T 2ld4_A           63 SFDIILSGLVPGSTTLH--------SAEILAEIARILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL  128 (176)
T ss_dssp             CEEEEEECCSTTCCCCC--------CHHHHHHHHHHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred             CEeEEEECChhhhcccC--------HHHHHHHHHHHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence            99999987654443 11        24699999999999999999643211      0   3455666766664

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=98.97  E-value=4.9e-09  Score=91.02  Aligned_cols=115  Identities=12%  Similarity=0.168  Sum_probs=94.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||=||-|.|..+..+++..+...++.|||++..++.|++-+..... ....-++++++.+|+...+..  ..+.+|.|
T Consensus        85 k~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~-~~~~dpRv~v~~~Dg~~~l~~--~~~~yDvI  161 (294)
T 3o4f_A           85 KHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNA-GSYDDPRFKLVIDDGVNFVNQ--TSQTFDVI  161 (294)
T ss_dssp             CEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCTTTTTSC--SSCCEEEE
T ss_pred             CeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccc-cccCCCcEEEEechHHHHHhh--ccccCCEE
Confidence            479999999999999999987778999999999999999876544210 111346899999999887753  46789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      ++..+||+-.    ...+.+.+|++.+.+.|+|||.++..+.
T Consensus       162 i~D~~dp~~~----~~~L~t~eFy~~~~~~L~p~Gv~v~q~~  199 (294)
T 3o4f_A          162 ISDCTDPIGP----GESLFTSAFYEGCKRCLNPGGIFVAQNG  199 (294)
T ss_dssp             EESCCCCCCT----TCCSSCCHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeCCCcCCC----chhhcCHHHHHHHHHHhCCCCEEEEecC
Confidence            9999998743    2457788999999999999999999764

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.96  E-value=7.2e-10  Score=94.45  Aligned_cols=101  Identities=16%  Similarity=0.216  Sum_probs=78.4

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||.|-+++.++...|...|+|+|+++.|++.++.++..+      +.. ..+...|...    ..+++.+|.+
T Consensus       134 ~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~------g~~-~~~~v~D~~~----~~p~~~~Dva  202 (281)
T 3lcv_B          134 NTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL------NVP-HRTNVADLLE----DRLDEPADVT  202 (281)
T ss_dssp             SEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT------TCC-EEEEECCTTT----SCCCSCCSEE
T ss_pred             ceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc------CCC-ceEEEeeecc----cCCCCCcchH
Confidence            4899999999999999999999999999999999999999988664      554 7888888642    2357889999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .++-.-|.-... .+     ...+ .+...|+++|.++-
T Consensus       203 L~lkti~~Le~q-~k-----g~g~-~ll~aL~~~~vvVS  234 (281)
T 3lcv_B          203 LLLKTLPCLETQ-QR-----GSGW-EVIDIVNSPNIVVT  234 (281)
T ss_dssp             EETTCHHHHHHH-ST-----THHH-HHHHHSSCSEEEEE
T ss_pred             HHHHHHHHhhhh-hh-----HHHH-HHHHHhCCCCEEEe
Confidence            887544432211 11     1344 78999999998764

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.96  E-value=4.1e-10  Score=96.37  Aligned_cols=80  Identities=15%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCH-------hHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRD-------KVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNY  137 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~-------~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~  137 (252)
                      ...|||+|||+|.+++.+|..  +..|+|+|+++       .+++.|++++...      ++.| +.++++|+.+.++. 
T Consensus        84 ~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~------~~~~ri~~~~~d~~~~l~~-  154 (258)
T 2r6z_A           84 HPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPETQ------DTAARINLHFGNAAEQMPA-  154 (258)
T ss_dssp             CCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHHHH------HHHTTEEEEESCHHHHHHH-
T ss_pred             cCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHHhh------CCccCeEEEECCHHHHHHh-
Confidence            458999999999999999997  57899999999       9998888776543      4555 99999999764432 


Q ss_pred             CCC--CcccEEEEeCCCCc
Q 025470          138 FEK--GQLTKMFFLFPDPH  154 (252)
Q Consensus       138 ~~~--~s~d~i~~~fpdP~  154 (252)
                      +++  +++|.|+++.+-|+
T Consensus       155 ~~~~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          155 LVKTQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHCCCSEEEECCCC--
T ss_pred             hhccCCCccEEEECCCCCC
Confidence            333  68999999765544

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.94  E-value=7.2e-09  Score=100.35  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=82.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHC------------------------------------------CCCeEEEEecCHhHHH
Q 025470           66 KIQFADIGCGFGGLLISLSTLF------------------------------------------PEVLMIGMELRDKVTE  103 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~------------------------------------------p~~~~iGiDis~~~i~  103 (252)
                      ...+||.+||+|.+++..|...                                          +...++|+|+++.+++
T Consensus       191 ~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av~  270 (703)
T 3v97_A          191 GTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVIQ  270 (703)
T ss_dssp             TSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHHH
T ss_pred             CCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHHH
Confidence            4579999999999999988752                                          2357999999999999


Q ss_pred             HHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHH---HHhhcC
Q 025470          104 YVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEY---AYVLGV  179 (252)
Q Consensus       104 ~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~---~~~Lkp  179 (252)
                      .|+.|+...      ++.+ +.|.++|+.+ +......+++|.|+.|.|=-   .+..... ....+.+.+   .+.+.|
T Consensus       271 ~A~~N~~~a------gv~~~i~~~~~D~~~-~~~~~~~~~~d~Iv~NPPYG---~Rlg~~~-~l~~ly~~l~~~lk~~~~  339 (703)
T 3v97_A          271 RARTNARLA------GIGELITFEVKDVAQ-LTNPLPKGPYGTVLSNPPYG---ERLDSEP-ALIALHSLLGRIMKNQFG  339 (703)
T ss_dssp             HHHHHHHHT------TCGGGEEEEECCGGG-CCCSCTTCCCCEEEECCCCC---C---CCH-HHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHc------CCCCceEEEECChhh-CccccccCCCCEEEeCCCcc---ccccchh-HHHHHHHHHHHHHHhhCC
Confidence            999988764      6665 9999999975 43223334899999986532   1111000 012234434   444558


Q ss_pred             CcEEEEEeCchHHHH
Q 025470          180 GGIIYTITDVEELGD  194 (252)
Q Consensus       180 gG~l~~~td~~~~~~  194 (252)
                      ||.+++.|.+.++..
T Consensus       340 g~~~~ilt~~~~l~~  354 (703)
T 3v97_A          340 GWNLSLFSASPDLLS  354 (703)
T ss_dssp             TCEEEEEESCHHHHH
T ss_pred             CCeEEEEeCCHHHHH
Confidence            999999998877654

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.93  E-value=1.5e-11  Score=104.17  Aligned_cols=108  Identities=17%  Similarity=0.207  Sum_probs=73.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~d  144 (252)
                      ...|||||||+|.++..+++..  ..++|+|+++.+++.|++++        ...+|+.++++|+.+ ++  ++ ++++ 
T Consensus        30 ~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~--------~~~~~v~~~~~D~~~-~~--~~~~~~f-   95 (245)
T 1yub_A           30 TDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKL--------KLNTRVTLIHQDILQ-FQ--FPNKQRY-   95 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTT--------TTCSEEEECCSCCTT-TT--CCCSSEE-
T ss_pred             CCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHh--------ccCCceEEEECChhh-cC--cccCCCc-
Confidence            4589999999999999999994  78999999999987765433        134689999999874 43  33 3577 


Q ss_pred             EEEEeCCCCcccc--ccc-cccccCHHHH----HHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKE--KNH-RRRVISPHLL----DEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~--~h~-krr~~~~~~l----~~~~~~LkpgG~l~~~t  187 (252)
                      .|+.|.|--....  .+. .+......++    +.+.++|+|||.+.+.+
T Consensus        96 ~vv~n~Py~~~~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~  145 (245)
T 1yub_A           96 KIVGNIPYHLSTQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL  145 (245)
T ss_dssp             EEEEECCSSSCHHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred             EEEEeCCccccHHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence            7777765322100  000 0000111234    67899999999887755

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=98.92  E-value=5.3e-09  Score=88.21  Aligned_cols=99  Identities=8%  Similarity=0.086  Sum_probs=72.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||.|.+++.++   +...|+|+||++.+++.+++++...      + .++.+..+|...  .  .+++++|.
T Consensus       106 p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~~~~------g-~~~~~~v~D~~~--~--~~~~~~Dv  171 (253)
T 3frh_A          106 PRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFAREK------D-WDFTFALQDVLC--A--PPAEAGDL  171 (253)
T ss_dssp             CSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHHHHT------T-CEEEEEECCTTT--S--CCCCBCSE
T ss_pred             CCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHHHhc------C-CCceEEEeeccc--C--CCCCCcch
Confidence            3489999999999998877   7889999999999999999886542      3 678999999752  1  24669999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      |.++-.-|.-.  +..    ....+ .+...|+++|.++-
T Consensus       172 vLllk~lh~LE--~q~----~~~~~-~ll~aL~~~~vvVs  204 (253)
T 3frh_A          172 ALIFKLLPLLE--REQ----AGSAM-ALLQSLNTPRMAVS  204 (253)
T ss_dssp             EEEESCHHHHH--HHS----TTHHH-HHHHHCBCSEEEEE
T ss_pred             HHHHHHHHHhh--hhc----hhhHH-HHHHHhcCCCEEEE
Confidence            98874322211  111    11233 77779999987654

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.91  E-value=1.3e-08  Score=86.04  Aligned_cols=73  Identities=19%  Similarity=0.366  Sum_probs=57.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC-Cccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK-GQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~-~s~d  144 (252)
                      ...|||||||+|.++..+++..  ..++|||+++.+++.+++++.        ..+|+.++++|+.. ++  +++ ..+ 
T Consensus        31 ~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~--------~~~~v~~~~~D~~~-~~--~~~~~~~-   96 (244)
T 1qam_A           31 HDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV--------DHDNFQVLNKDILQ-FK--FPKNQSY-   96 (244)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT--------TCCSEEEECCCGGG-CC--CCSSCCC-
T ss_pred             CCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhc--------cCCCeEEEEChHHh-CC--cccCCCe-
Confidence            4589999999999999999995  789999999999998876542        24689999999874 43  332 344 


Q ss_pred             EEEEeCCC
Q 025470          145 KMFFLFPD  152 (252)
Q Consensus       145 ~i~~~fpd  152 (252)
                      .|+.|.|-
T Consensus        97 ~vv~nlPy  104 (244)
T 1qam_A           97 KIFGNIPY  104 (244)
T ss_dssp             EEEEECCG
T ss_pred             EEEEeCCc
Confidence            57777653

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.88  E-value=4.2e-09  Score=90.76  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=57.6

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC-CcccEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK-GQLTKM  146 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~-~s~d~i  146 (252)
                      .|||||||+|.++..+++..  ..++|||+++.+++.+++++         ...|+.++++|+.. ++  +++ ...|.|
T Consensus        49 ~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~---------~~~~v~vi~~D~l~-~~--~~~~~~~~~i  114 (271)
T 3fut_A           49 PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETL---------SGLPVRLVFQDALL-YP--WEEVPQGSLL  114 (271)
T ss_dssp             CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHT---------TTSSEEEEESCGGG-SC--GGGSCTTEEE
T ss_pred             eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhc---------CCCCEEEEECChhh-CC--hhhccCccEE
Confidence            89999999999999999984  68999999999999887654         12589999999874 43  222 257889


Q ss_pred             EEeCCC
Q 025470          147 FFLFPD  152 (252)
Q Consensus       147 ~~~fpd  152 (252)
                      +.|.|-
T Consensus       115 v~NlPy  120 (271)
T 3fut_A          115 VANLPY  120 (271)
T ss_dssp             EEEECS
T ss_pred             EecCcc
Confidence            988764

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.88  E-value=6.7e-09  Score=88.82  Aligned_cols=119  Identities=13%  Similarity=0.101  Sum_probs=77.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-CCCC-c-ccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-NPGQ-Y-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-~~~~-~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ..|||+|||+|..++.+|.+  ++.|+|||+++.+++.++.++...+.. ..++ + .|+.++++|+.+.+.. ++ ..+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~--g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~-~~-~~f  165 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD-IT-PRP  165 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTT-CS-SCC
T ss_pred             CEEEEcCCcCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHh-Cc-ccC
Confidence            68999999999999999998  568999999999888887776654321 1122 3 6899999999876653 33 369


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      |.|+++.|-|+..         ....++...++|++.+-  -..|...+.+++....
T Consensus       166 DvV~lDP~y~~~~---------~saavkk~~~~lr~l~~--~~~~~~~ll~~a~~~a  211 (258)
T 2oyr_A          166 QVVYLDPMFPHKQ---------KSALVKKEMRVFQSLVG--PDLDADGLLEPARLLA  211 (258)
T ss_dssp             SEEEECCCCCCCC---------C-----HHHHHHHHHSC--CCTTGGGGHHHHHHHC
T ss_pred             CEEEEcCCCCCcc---------cchHHHHHHHHHHHhhc--CCccHHHHHHHHHHhc
Confidence            9999976555432         11345555566655431  0233444555554443

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.86  E-value=3.8e-09  Score=95.89  Aligned_cols=78  Identities=15%  Similarity=0.190  Sum_probs=62.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|..++.+|+.  ...++|||+++.+++.|+.++...    ..++.|+.++++|+.+.++. +..+.+|.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~----~~gl~~i~~i~~Da~~~L~~-~~~~~fDv  166 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLL----LNEGKDVNILTGDFKEYLPL-IKTFHPDY  166 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHH----SCTTCEEEEEESCGGGSHHH-HHHHCCSE
T ss_pred             CCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHh----ccCCCcEEEEECcHHHhhhh-ccCCCceE
Confidence            458999999999999999988  568999999999999999987653    01457899999999764432 22357999


Q ss_pred             EEEeC
Q 025470          146 MFFLF  150 (252)
Q Consensus       146 i~~~f  150 (252)
                      |+++.
T Consensus       167 V~lDP  171 (410)
T 3ll7_A          167 IYVDP  171 (410)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99854

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.84  E-value=4.4e-09  Score=98.99  Aligned_cols=119  Identities=15%  Similarity=0.073  Sum_probs=82.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC------------------CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-----
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP------------------EVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-----  122 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p------------------~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-----  122 (252)
                      ...|||.|||+|.+++.+++...                  ..+++|+|+++.+++.|+.++..      .+..+     
T Consensus       170 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l------~gi~~~~~~~  243 (541)
T 2ar0_A          170 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL------HDIEGNLDHG  243 (541)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT------TTCCCBGGGT
T ss_pred             CCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH------hCCCcccccc
Confidence            45899999999999999887521                  24799999999999999876643      25554     


Q ss_pred             EEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccc------cccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          123 ISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRR------RVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       123 v~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~kr------r~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      +.+.++|+...  .......+|.|+.|.|--.......+.      .-....|+..+.+.|+|||++.+++.+..+
T Consensus       244 ~~I~~gDtL~~--~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p~~~L  317 (541)
T 2ar0_A          244 GAIRLGNTLGS--DGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL  317 (541)
T ss_dssp             BSEEESCTTSH--HHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred             CCeEeCCCccc--ccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEecCcce
Confidence            78889997531  113356899999997632211100000      001236999999999999999998876533

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.83  E-value=2.6e-08  Score=82.05  Aligned_cols=98  Identities=14%  Similarity=0.079  Sum_probs=73.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCC---cccEEEEeCCcccc---------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQ---YQNISVVRTNSMKY---------  133 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~---~~nv~~~~~da~~~---------  133 (252)
                      ...|||||||  ..++.+|+. ++..++.||.+++..+.|++++...      +   .+||.++.+|+.+.         
T Consensus        31 a~~VLEiGtG--ySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~~~------g~~~~~~I~~~~gda~~~~~wg~p~~~  101 (202)
T 3cvo_A           31 AEVILEYGSG--GSTVVAAEL-PGKHVTSVESDRAWARMMKAWLAAN------PPAEGTEVNIVWTDIGPTGDWGHPVSD  101 (202)
T ss_dssp             CSEEEEESCS--HHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHHHS------CCCTTCEEEEEECCCSSBCGGGCBSSS
T ss_pred             CCEEEEECch--HHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHHc------CCCCCCceEEEEeCchhhhcccccccc
Confidence            3489999995  688888885 4789999999999999999888764      4   46899999997543         


Q ss_pred             -----cCcc------C-CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          134 -----IPNY------F-EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       134 -----l~~~------~-~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                           ++.+      + ..+.+|.|++.-.         |+    ...+..+.+.|+|||+|++
T Consensus       102 ~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~---------k~----~~~~~~~l~~l~~GG~Iv~  152 (202)
T 3cvo_A          102 AKWRSYPDYPLAVWRTEGFRHPDVVLVDGR---------FR----VGCALATAFSITRPVTLLF  152 (202)
T ss_dssp             TTGGGTTHHHHGGGGCTTCCCCSEEEECSS---------SH----HHHHHHHHHHCSSCEEEEE
T ss_pred             hhhhhHHHHhhhhhccccCCCCCEEEEeCC---------Cc----hhHHHHHHHhcCCCeEEEE
Confidence                 2211      1 2378999999641         11    1466677799999999954

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.80  E-value=1.7e-08  Score=87.22  Aligned_cols=75  Identities=13%  Similarity=0.228  Sum_probs=56.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC--CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC--ccCCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE--VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP--NYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~--~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~--~~~~~~  141 (252)
                      ...|||||||+|.++..|++..+.  ..++|||+++.|++.++++.          ..|+.++++|+.. ++  ..+++.
T Consensus        43 ~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----------~~~v~~i~~D~~~-~~~~~~~~~~  111 (279)
T 3uzu_A           43 GERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----------GELLELHAGDALT-FDFGSIARPG  111 (279)
T ss_dssp             TCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----------GGGEEEEESCGGG-CCGGGGSCSS
T ss_pred             cCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----------CCCcEEEECChhc-CChhHhcccc
Confidence            458999999999999999998542  45999999999999887652          3589999999974 32  222111


Q ss_pred             --cccEEEEeCC
Q 025470          142 --QLTKMFFLFP  151 (252)
Q Consensus       142 --s~d~i~~~fp  151 (252)
                        .-..|+.|.|
T Consensus       112 ~~~~~~vv~NlP  123 (279)
T 3uzu_A          112 DEPSLRIIGNLP  123 (279)
T ss_dssp             SSCCEEEEEECC
T ss_pred             cCCceEEEEccC
Confidence              2346777765

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.79  E-value=4.9e-08  Score=91.74  Aligned_cols=134  Identities=15%  Similarity=0.116  Sum_probs=93.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHC---CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLF---PEVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~---p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~~~  140 (252)
                      ...|||.+||+|.+++.+++..   +...++|+|+++.++..|+.++...      +.  +++.+.++|....-......
T Consensus       222 ~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~------gi~~~~~~I~~gDtL~~d~p~~~~  295 (542)
T 3lkd_A          222 GFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILH------GVPIENQFLHNADTLDEDWPTQEP  295 (542)
T ss_dssp             TCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHT------TCCGGGEEEEESCTTTSCSCCSSC
T ss_pred             CCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHc------CCCcCccceEecceeccccccccc
Confidence            4589999999999999999884   3578999999999999998776442      55  68999999975310012446


Q ss_pred             CcccEEEEeCCCC--cccccc--ccccc-----------cCHHHHHHHHHhhc-CCcEEEEEeCchHHH-----HHHHHH
Q 025470          141 GQLTKMFFLFPDP--HFKEKN--HRRRV-----------ISPHLLDEYAYVLG-VGGIIYTITDVEELG-----DWMRSC  199 (252)
Q Consensus       141 ~s~d~i~~~fpdP--~~k~~h--~krr~-----------~~~~~l~~~~~~Lk-pgG~l~~~td~~~~~-----~~~~~~  199 (252)
                      ..+|.|+.|.|--  |.....  ...|.           ..-.|+..+.+.|+ +||++.+++.+..++     ..+.+.
T Consensus       296 ~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~g~Lf~~~~~~~iRk~  375 (542)
T 3lkd_A          296 TNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPHGVLFRGNAEGTIRKA  375 (542)
T ss_dssp             CCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEETHHHHCCTHHHHHHHH
T ss_pred             ccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecchHhhCCchhHHHHHH
Confidence            7899999997732  311100  01111           11248999999999 999999998765543     345555


Q ss_pred             HhcCCC
Q 025470          200 LENHPM  205 (252)
Q Consensus       200 ~~~~~~  205 (252)
                      +.+...
T Consensus       376 Lle~~~  381 (542)
T 3lkd_A          376 LLEEGA  381 (542)
T ss_dssp             HHHTTC
T ss_pred             HHhCCc
Confidence            554443

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.76  E-value=4.5e-08  Score=94.85  Aligned_cols=136  Identities=14%  Similarity=0.107  Sum_probs=87.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC---CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP---EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p---~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ...|||.|||+|.+++.++...+   ...++|+|+++.+++.|+.+..........+..+..+...|+.. . .......
T Consensus       322 g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~-~-~~~~~~k  399 (878)
T 3s1s_A          322 DEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCS-L-NPEDFAN  399 (878)
T ss_dssp             TCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGG-C-CGGGGTT
T ss_pred             CCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhc-c-cccccCC
Confidence            45899999999999999999865   35799999999999888433221100011244444555555542 1 2234578


Q ss_pred             ccEEEEeCCCC--ccccc---cccc----------------cccCHHHHHHHHHhhcCCcEEEEEeCchHH------HHH
Q 025470          143 LTKMFFLFPDP--HFKEK---NHRR----------------RVISPHLLDEYAYVLGVGGIIYTITDVEEL------GDW  195 (252)
Q Consensus       143 ~d~i~~~fpdP--~~k~~---h~kr----------------r~~~~~~l~~~~~~LkpgG~l~~~td~~~~------~~~  195 (252)
                      +|.|+.|.|--  +....   ....                .-+...|++.+.+.|++||++.+.+....+      ...
T Consensus       400 FDVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~s~Lf~sg~~~kk  479 (878)
T 3s1s_A          400 VSVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPKQYLTAQGNESKA  479 (878)
T ss_dssp             EEEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEETHHHHCCSHHHHH
T ss_pred             CCEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEEChHHhccCChHHHH
Confidence            99999997641  11000   0000                012356899999999999999999987655      345


Q ss_pred             HHHHHhcC
Q 025470          196 MRSCLENH  203 (252)
Q Consensus       196 ~~~~~~~~  203 (252)
                      +.+.+...
T Consensus       480 LRk~LLe~  487 (878)
T 3s1s_A          480 FREFLVGN  487 (878)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHhC
Confidence            56655544

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=98.75  E-value=6.9e-08  Score=86.27  Aligned_cols=136  Identities=15%  Similarity=0.077  Sum_probs=96.8

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..|||+++|.|.=+..||...+...++++|+++..+...++++............|+.+...|+.. +.. ...+.||
T Consensus       148 pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~-~~~-~~~~~fD  225 (359)
T 4fzv_A          148 PGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRK-WGE-LEGDTYD  225 (359)
T ss_dssp             TTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGG-HHH-HSTTCEE
T ss_pred             CCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhh-cch-hccccCC
Confidence            45699999999999999999998777899999999999888888766511111223689999999874 332 3467899


Q ss_pred             EEEEeCCCCc----ccccc--cccc----------ccCHHHHHHHHHhhcCCcEEEEEe------CchHHHHHHHHHHhc
Q 025470          145 KMFFLFPDPH----FKEKN--HRRR----------VISPHLLDEYAYVLGVGGIIYTIT------DVEELGDWMRSCLEN  202 (252)
Q Consensus       145 ~i~~~fpdP~----~k~~h--~krr----------~~~~~~l~~~~~~LkpgG~l~~~t------d~~~~~~~~~~~~~~  202 (252)
                      .|.+.-|.--    ...++  .+++          .++..+|....+.|||||+|+-+|      .|+...+++++...+
T Consensus       226 ~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCSl~~~ENE~vV~~~L~~~~~  305 (359)
T 4fzv_A          226 RVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVVQGAIELLAN  305 (359)
T ss_dssp             EEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESCCCTTTTHHHHHHHHHHHHH
T ss_pred             EEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCchhhCHHHHHHHHHhCCC
Confidence            9999876321    10111  0010          145679999999999999999876      355666666655543

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.66  E-value=1.7e-08  Score=85.93  Aligned_cols=75  Identities=16%  Similarity=0.152  Sum_probs=53.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC--ccCC-CCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP--NYFE-KGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~--~~~~-~~s  142 (252)
                      ...|||||||+|.++. ++ ..+...++|||+++.|++.+++++        ...+|+.++++|+.. ++  ..+. ++.
T Consensus        22 ~~~VLEIG~G~G~lt~-l~-~~~~~~v~avEid~~~~~~a~~~~--------~~~~~v~~i~~D~~~-~~~~~~~~~~~~   90 (252)
T 1qyr_A           22 GQAMVEIGPGLAALTE-PV-GERLDQLTVIELDRDLAARLQTHP--------FLGPKLTIYQQDAMT-FNFGELAEKMGQ   90 (252)
T ss_dssp             TCCEEEECCTTTTTHH-HH-HTTCSCEEEECCCHHHHHHHHTCT--------TTGGGEEEECSCGGG-CCHHHHHHHHTS
T ss_pred             cCEEEEECCCCcHHHH-hh-hCCCCeEEEEECCHHHHHHHHHHh--------ccCCceEEEECchhh-CCHHHhhcccCC
Confidence            4589999999999999 65 433333999999999998877543        124689999999874 32  1110 123


Q ss_pred             ccEEEEeCC
Q 025470          143 LTKMFFLFP  151 (252)
Q Consensus       143 ~d~i~~~fp  151 (252)
                      .+.|+.|.|
T Consensus        91 ~~~vvsNlP   99 (252)
T 1qyr_A           91 PLRVFGNLP   99 (252)
T ss_dssp             CEEEEEECC
T ss_pred             ceEEEECCC
Confidence            467888876

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.66  E-value=5.1e-08  Score=82.83  Aligned_cols=72  Identities=24%  Similarity=0.319  Sum_probs=54.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC--Ccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK--GQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~--~s~  143 (252)
                      ...|||||||+|.++..+++. +...++|||+++.+++.++++          ...|+.++++|+.. ++  +++  +.+
T Consensus        32 ~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~----------~~~~v~~i~~D~~~-~~--~~~~~~~~   97 (249)
T 3ftd_A           32 GNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI----------GDERLEVINEDASK-FP--FCSLGKEL   97 (249)
T ss_dssp             TCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS----------CCTTEEEECSCTTT-CC--GGGSCSSE
T ss_pred             cCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc----------cCCCeEEEEcchhh-CC--hhHccCCc
Confidence            458999999999999999998 457899999999999876542          24589999999874 33  221  123


Q ss_pred             cEEEEeCCC
Q 025470          144 TKMFFLFPD  152 (252)
Q Consensus       144 d~i~~~fpd  152 (252)
                       .|+.|.|-
T Consensus        98 -~vv~NlPy  105 (249)
T 3ftd_A           98 -KVVGNLPY  105 (249)
T ss_dssp             -EEEEECCT
T ss_pred             -EEEEECch
Confidence             67777764

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.63  E-value=4.5e-08  Score=92.08  Aligned_cols=132  Identities=14%  Similarity=0.129  Sum_probs=87.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC---------------CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFP---------------EVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNS  130 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p---------------~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da  130 (252)
                      ..|||.+||+|.+++.+++...               ..+++|+|+++.+++.|+.++...      ++. ++.+.++|.
T Consensus       246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~------gi~~~i~i~~gDt  319 (544)
T 3khk_A          246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR------GIDFNFGKKNADS  319 (544)
T ss_dssp             EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT------TCCCBCCSSSCCT
T ss_pred             CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh------CCCcccceeccch
Confidence            3899999999999998865421               468999999999999998776442      332 444477886


Q ss_pred             ccccCccCCCCcccEEEEeCCCC---cccccc-cccc------------c-----cCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          131 MKYIPNYFEKGQLTKMFFLFPDP---HFKEKN-HRRR------------V-----ISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       131 ~~~l~~~~~~~s~d~i~~~fpdP---~~k~~h-~krr------------~-----~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      ..  ...+....+|.|+.|.|--   |..... ...|            +     ..-.|++.+.+.|+|||++.+++.+
T Consensus       320 L~--~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~aiVlP~  397 (544)
T 3khk_A          320 FL--DDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLAPTGSMALLLAN  397 (544)
T ss_dssp             TT--SCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEEEEEEEEEEEET
T ss_pred             hc--CcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhccCceEEEEecc
Confidence            42  2234567899999997733   221100 0001            0     1125999999999999999998865


Q ss_pred             hHH------HHHHHHHHhcCCCc
Q 025470          190 EEL------GDWMRSCLENHPMF  206 (252)
Q Consensus       190 ~~~------~~~~~~~~~~~~~~  206 (252)
                      -.+      ...+.+.+.....+
T Consensus       398 g~L~~~~~~~~~iRk~Lle~~~l  420 (544)
T 3khk_A          398 GSMSSNTNNEGEIRKTLVEQDLV  420 (544)
T ss_dssp             HHHHCCGGGHHHHHHHHHHTTCE
T ss_pred             hhhhcCcchHHHHHHHHHhCCcH
Confidence            433      23455555544433

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=98.53  E-value=2.5e-07  Score=79.93  Aligned_cols=102  Identities=13%  Similarity=0.124  Sum_probs=78.0

Q ss_pred             ceEEEEcCcccHHHHHHHHHC-----CCCeEEEEecCHh--------------------------HHHHHHHHHHHHhhc
Q 025470           67 IQFADIGCGFGGLLISLSTLF-----PEVLMIGMELRDK--------------------------VTEYVKERILALRVS  115 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~-----p~~~~iGiDis~~--------------------------~i~~a~~~~~~~~~~  115 (252)
                      ..||||||..|..++.+|...     ++..++++|..+.                          .++.+++++...   
T Consensus       108 g~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~---  184 (282)
T 2wk1_A          108 GDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY---  184 (282)
T ss_dssp             CEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT---
T ss_pred             CcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc---
Confidence            489999999999999998764     4788999996421                          355677777654   


Q ss_pred             CCCCc--ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          116 NPGQY--QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       116 ~~~~~--~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                         ++  ++|.++.+|+.+.|+. ++.+.+|.|++.. | +..  .      ...+++.+...|+|||.|++
T Consensus       185 ---gl~~~~I~li~Gda~etL~~-~~~~~~d~vfIDa-D-~y~--~------~~~~Le~~~p~L~pGGiIv~  242 (282)
T 2wk1_A          185 ---DLLDEQVRFLPGWFKDTLPT-APIDTLAVLRMDG-D-LYE--S------TWDTLTNLYPKVSVGGYVIV  242 (282)
T ss_dssp             ---TCCSTTEEEEESCHHHHSTT-CCCCCEEEEEECC-C-SHH--H------HHHHHHHHGGGEEEEEEEEE
T ss_pred             ---CCCcCceEEEEeCHHHHHhh-CCCCCEEEEEEcC-C-ccc--c------HHHHHHHHHhhcCCCEEEEE
Confidence               55  7899999999988875 4567899999875 2 110  0      12589999999999998876

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=98.49  E-value=3.3e-07  Score=82.00  Aligned_cols=126  Identities=15%  Similarity=0.133  Sum_probs=88.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh--cCCCCcccEEEEeCCcccccCccC-CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV--SNPGQYQNISVVRTNSMKYIPNYF-EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~--~~~~~~~nv~~~~~da~~~l~~~~-~~~s  142 (252)
                      ...||=||-|.|..+..+.+. |...++.|||++.+++.|++.+...-.  ......++++++.+|+...+.... ..+.
T Consensus       206 pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~~  284 (381)
T 3c6k_A          206 GKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGRE  284 (381)
T ss_dssp             TCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTCC
T ss_pred             CCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccCc
Confidence            358999999999999999875 557899999999999998875421100  011112469999999987664322 2457


Q ss_pred             ccEEEEeCCCCcccc--ccccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          143 LTKMFFLFPDPHFKE--KNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~--~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      +|.|++..+|+....  .+....+.+..|++.+.+.|+|||.++.++.+..+
T Consensus       285 yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~~s~~~  336 (381)
T 3c6k_A          285 FDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQGNCVNL  336 (381)
T ss_dssp             EEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEEEETTC
T ss_pred             eeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEecCCCcc
Confidence            999999987765321  11122345668999999999999999987765433

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=98.40  E-value=5.1e-06  Score=74.67  Aligned_cols=174  Identities=14%  Similarity=0.094  Sum_probs=99.0

Q ss_pred             ceEEEEcCcccHHHHHHHHH-----------------CCCCeEEEEecCHhHHHHHHHHHHH----HhhcCCCCcccEEE
Q 025470           67 IQFADIGCGFGGLLISLSTL-----------------FPEVLMIGMELRDKVTEYVKERILA----LRVSNPGQYQNISV  125 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~-----------------~p~~~~iGiDis~~~i~~a~~~~~~----~~~~~~~~~~nv~~  125 (252)
                      -.|+|+|||+|..++.+...                 .|+..|+.-|+-.+=....-+.+..    .+... ....+-.|
T Consensus        54 ~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~-g~~~~~~f  132 (384)
T 2efj_A           54 FKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN-GRKIGSCL  132 (384)
T ss_dssp             EEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT-CCCTTSEE
T ss_pred             eEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc-cCCCCceE
Confidence            47999999999999887776                 4678899999873211111111110    00001 11123466


Q ss_pred             EeCCcccccCccCCCCcccEEEEeCCCCcccccccc-----------ccc---------c-----------CHHHHHHHH
Q 025470          126 VRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHR-----------RRV---------I-----------SPHLLDEYA  174 (252)
Q Consensus       126 ~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~k-----------rr~---------~-----------~~~~l~~~~  174 (252)
                      +.+...-+-...|+++++|.|+.++.-.|..+.-..           .++         +           -..||+..+
T Consensus       133 ~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~Ra  212 (384)
T 2efj_A          133 IGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIHS  212 (384)
T ss_dssp             EEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEecchhhhhccCCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            676665445567899999999999988885432100           000         0           012467779


Q ss_pred             HhhcCCcEEEEEeC---ch--H-----HHHHHHHHHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcC-CCeEEE
Q 025470          175 YVLGVGGIIYTITD---VE--E-----LGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNG-GQTFQA  243 (252)
Q Consensus       175 ~~LkpgG~l~~~td---~~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G-~~i~~~  243 (252)
                      +.|+|||++++.+-   +.  +     ....++..+...+.......+.+ ..|.  +.....++...+.+.| ..|.++
T Consensus       213 ~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf-~~P~--y~ps~~E~~~~le~~g~F~i~~l  289 (384)
T 2efj_A          213 EELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSF-NVPI--YAPSTEEVKRIVEEEGSFEILYL  289 (384)
T ss_dssp             HHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTC-CCSB--CCCCHHHHHHHHHHHCSEEEEEE
T ss_pred             HHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhccc-CCcc--cCCCHHHHHHHHHHcCCceEEEE
Confidence            99999999999863   22  2     45555555554443222211111 1232  2234446777777775 467665


Q ss_pred             E
Q 025470          244 V  244 (252)
Q Consensus       244 ~  244 (252)
                      .
T Consensus       290 e  290 (384)
T 2efj_A          290 E  290 (384)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.35  E-value=3.3e-06  Score=72.22  Aligned_cols=109  Identities=16%  Similarity=0.135  Sum_probs=69.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||.|.++...+++.+...+.|+|+..++...      .. .....+ .|+..++.++. ..  .+..+.+|.
T Consensus        75 ~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~------pi-~~~~~g-~~ii~~~~~~d-v~--~l~~~~~Dl  143 (277)
T 3evf_A           75 EGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEK------PM-NVQSLG-WNIITFKDKTD-IH--RLEPVKCDT  143 (277)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCC------CC-CCCBTT-GGGEEEECSCC-TT--TSCCCCCSE
T ss_pred             CCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccc------cc-ccCcCC-CCeEEEeccce-eh--hcCCCCccE
Confidence            458999999999999999988766678888887542100      00 000011 15666677653 22  256778999


Q ss_pred             EEEeCCCCccc--cccccccccCHHHHHHHHHhhcCC-cEEEEEeCc
Q 025470          146 MFFLFPDPHFK--EKNHRRRVISPHLLDEYAYVLGVG-GIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k--~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~td~  189 (252)
                      |.......-..  ..+.  |  +..+|+.+.++|+|| |.|+++.-.
T Consensus       144 VlsD~apnsG~~~~D~~--r--s~~LL~~a~~~LkpG~G~FV~KVf~  186 (277)
T 3evf_A          144 LLCDIGESSSSSVTEGE--R--TVRVLDTVEKWLACGVDNFCVKVLA  186 (277)
T ss_dssp             EEECCCCCCSCHHHHHH--H--HHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred             EEecCccCcCchHHHHH--H--HHHHHHHHHHHhCCCCCeEEEEecC
Confidence            99876322100  0111  1  123578889999999 999998755

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=98.33  E-value=3.5e-06  Score=75.56  Aligned_cols=123  Identities=15%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             CceEEEEcCcccHHHHHHH--------HHC-------CCCeEEEEecCHhHHHHHHHHHHHHhh-c-----CCCCcccEE
Q 025470           66 KIQFADIGCGFGGLLISLS--------TLF-------PEVLMIGMELRDKVTEYVKERILALRV-S-----NPGQYQNIS  124 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA--------~~~-------p~~~~iGiDis~~~i~~a~~~~~~~~~-~-----~~~~~~nv~  124 (252)
                      .-.|+|+|||+|..++.++        +++       |+.+|+.-|+-.+.....-+.+...+. .     ......+-.
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4589999999999998772        222       788899999887765443322211100 0     000000112


Q ss_pred             EEeCCcccccCccCCCCcccEEEEeCCCCcccccccc-----------ccc-------------------cCHHHHHHHH
Q 025470          125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHR-----------RRV-------------------ISPHLLDEYA  174 (252)
Q Consensus       125 ~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~k-----------rr~-------------------~~~~~l~~~~  174 (252)
                      |+.+...-+-...||++++|.|+.++.-.|..+.-..           .++                   --..||+..+
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ra  212 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRARA  212 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEecChhhhcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444333233456889999999999988886521100           000                   1123788889


Q ss_pred             HhhcCCcEEEEEeC
Q 025470          175 YVLGVGGIIYTITD  188 (252)
Q Consensus       175 ~~LkpgG~l~~~td  188 (252)
                      +.|+|||++++.+-
T Consensus       213 ~eL~pGG~mvl~~~  226 (374)
T 3b5i_A          213 AEVKRGGAMFLVCL  226 (374)
T ss_dssp             HHEEEEEEEEEEEE
T ss_pred             HHhCCCCEEEEEEe
Confidence            99999999999763

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.26  E-value=1.3e-06  Score=75.15  Aligned_cols=72  Identities=13%  Similarity=0.133  Sum_probs=57.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC---CCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE---KGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~---~~s  142 (252)
                      ..++||.+||.|.++..++++  +..++|+|.++.+++.|++ +      .  . +++.++++|..+ +...+.   .+.
T Consensus        23 gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L------~--~-~rv~lv~~~f~~-l~~~L~~~g~~~   89 (285)
T 1wg8_A           23 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-L------H--L-PGLTVVQGNFRH-LKRHLAALGVER   89 (285)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-T------C--C-TTEEEEESCGGG-HHHHHHHTTCSC
T ss_pred             CCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-h------c--c-CCEEEEECCcch-HHHHHHHcCCCC
Confidence            459999999999999999998  6799999999999988765 3      1  2 689999999874 433332   257


Q ss_pred             ccEEEEeC
Q 025470          143 LTKMFFLF  150 (252)
Q Consensus       143 ~d~i~~~f  150 (252)
                      +|.|++..
T Consensus        90 vDgIL~DL   97 (285)
T 1wg8_A           90 VDGILADL   97 (285)
T ss_dssp             EEEEEEEC
T ss_pred             cCEEEeCC
Confidence            99998753

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=98.22  E-value=1.5e-05  Score=71.02  Aligned_cols=170  Identities=14%  Similarity=0.100  Sum_probs=103.4

Q ss_pred             ceEEEEcCcccHHHHHHHHH----------------CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc
Q 025470           67 IQFADIGCGFGGLLISLSTL----------------FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS  130 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~----------------~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da  130 (252)
                      -.|+|+||++|..++.+...                .|+..++.-|+-.+....+-+.+...   .  ...+-.|+.+..
T Consensus        53 ~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~---~--~~~~~~f~~gvp  127 (359)
T 1m6e_X           53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIE---N--DVDGVCFINGVP  127 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTS---C--SCTTCEEEEEEE
T ss_pred             eEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchh---c--ccCCCEEEEecc
Confidence            47999999999877654443                46788999999888766554332211   0  001345666665


Q ss_pred             ccccCccCCCCcccEEEEeCCCCcccccccc-----cc----------c----------cCHHHHHHHHHhhcCCcEEEE
Q 025470          131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHR-----RR----------V----------ISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       131 ~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~k-----rr----------~----------~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .-+-...|+++++|.|+.++.-.|..+.-..     .+          +          --..||+..++.|+|||++++
T Consensus       128 gSFy~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl  207 (359)
T 1m6e_X          128 GSFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVL  207 (359)
T ss_dssp             SCSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEE
T ss_pred             hhhhhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEE
Confidence            5444567899999999999988886531100     00          0          013479999999999999999


Q ss_pred             EeCc--------------hHHHHHHHHHHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCC-CeEEEE
Q 025470          186 ITDV--------------EELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGG-QTFQAV  244 (252)
Q Consensus       186 ~td~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~-~i~~~~  244 (252)
                      .+-.              .+....++..+...+.......+.+. .|.  +.....++...+.+.|. .|-++.
T Consensus       208 ~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~-~P~--y~ps~~E~~~~ie~~G~F~i~~~e  278 (359)
T 1m6e_X          208 TILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFN-IPQ--YTPSPTEVEAEILKEGSFLIDHIE  278 (359)
T ss_dssp             EEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGC-CCC--BCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred             EEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccC-CCc--cCCCHHHHHHHHHHcCCceEEEEE
Confidence            8621              12233344444444433222212121 232  23455678888888876 776664

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.20  E-value=3.7e-06  Score=80.50  Aligned_cols=101  Identities=14%  Similarity=0.091  Sum_probs=66.1

Q ss_pred             ceEEEEcCcccHHHHHH---HH-HC---------CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCccc
Q 025470           67 IQFADIGCGFGGLLISL---ST-LF---------PEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMK  132 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~l---A~-~~---------p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~  132 (252)
                      .+|||||||+|.++...   ++ ..         ....|+|||.++.++...+....       ++. +.|.++++|+.+
T Consensus       411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-------Ng~~d~VtVI~gd~ee  483 (745)
T 3ua3_A          411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-------RTWKRRVTIIESDMRS  483 (745)
T ss_dssp             EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-------HTTTTCSEEEESCGGG
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-------cCCCCeEEEEeCchhh
Confidence            48999999999996432   21 11         23589999999977755444332       144 449999999975


Q ss_pred             ccCccCC-----CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEE
Q 025470          133 YIPNYFE-----KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII  183 (252)
Q Consensus       133 ~l~~~~~-----~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l  183 (252)
                       +.  ++     +..+|.|+.=...-.--      .-..++.|..+.+.|||||.+
T Consensus       484 -v~--lp~~~~~~ekVDIIVSElmGsfl~------nEL~pe~Ld~v~r~Lkp~Gi~  530 (745)
T 3ua3_A          484 -LP--GIAKDRGFEQPDIIVSELLGSFGD------NELSPECLDGVTGFLKPTTIS  530 (745)
T ss_dssp             -HH--HHHHHTTCCCCSEEEECCCBTTBG------GGSHHHHHHTTGGGSCTTCEE
T ss_pred             -cc--cccccCCCCcccEEEEeccccccc------hhccHHHHHHHHHhCCCCcEE
Confidence             43  32     46789988643221100      012346777788999999976

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.10  E-value=1.1e-05  Score=76.98  Aligned_cols=101  Identities=13%  Similarity=0.077  Sum_probs=64.9

Q ss_pred             ceEEEEcCcccHH---HHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           67 IQFADIGCGFGGL---LISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~---~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      .+|||||||+|.+   ++..+++. -...|++||.++.+. .|.+.....     +--+.|.++++|+.+ +.  + +..
T Consensus       359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N-----~~~dkVtVI~gd~ee-v~--L-PEK  428 (637)
T 4gqb_A          359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFE-----EWGSQVTVVSSDMRE-WV--A-PEK  428 (637)
T ss_dssp             EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHH-----TTGGGEEEEESCTTT-CC--C-SSC
T ss_pred             cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhc-----cCCCeEEEEeCccee-cc--C-Ccc
Confidence            4899999999988   44444442 223689999998544 566555443     234569999999875 43  2 467


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGII  183 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l  183 (252)
                      +|.|+.=.-.-.    --...+  ...+....+.|||||.+
T Consensus       429 VDIIVSEwMG~f----Ll~E~m--levL~Ardr~LKPgGim  463 (637)
T 4gqb_A          429 ADIIVSELLGSF----ADNELS--PECLDGAQHFLKDDGVS  463 (637)
T ss_dssp             EEEEECCCCBTT----BGGGCH--HHHHHHHGGGEEEEEEE
T ss_pred             cCEEEEEcCccc----ccccCC--HHHHHHHHHhcCCCcEE
Confidence            888874221111    111112  24677778999999986

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.06  E-value=8.9e-06  Score=63.12  Aligned_cols=83  Identities=13%  Similarity=0.153  Sum_probs=56.7

Q ss_pred             ceEEEEcCccc-HHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCccc
Q 025470           67 IQFADIGCGFG-GLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~G-~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~d  144 (252)
                      ..|||||||+| ..+..||+.. +..|+++|+++.++                  .   +++.|+..  + .+. -..+|
T Consensus        37 ~rVlEVG~G~g~~vA~~La~~~-g~~V~atDInp~Av------------------~---~v~dDiF~--P-~~~~Y~~~D   91 (153)
T 2k4m_A           37 TRVVEVGAGRFLYVSDYIRKHS-KVDLVLTDIKPSHG------------------G---IVRDDITS--P-RMEIYRGAA   91 (153)
T ss_dssp             SEEEEETCTTCCHHHHHHHHHS-CCEEEEECSSCSST------------------T---EECCCSSS--C-CHHHHTTEE
T ss_pred             CcEEEEccCCChHHHHHHHHhC-CCeEEEEECCcccc------------------c---eEEccCCC--C-cccccCCcC
Confidence            48999999999 6999999842 67899999998643                  1   77888642  1 111 14789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .||..=|.|-.          ++ .+..+++..  |.-++|.+
T Consensus        92 LIYsirPP~El----------~~-~i~~lA~~v--~adliI~p  121 (153)
T 2k4m_A           92 LIYSIRPPAEI----------HS-SLMRVADAV--GARLIIKP  121 (153)
T ss_dssp             EEEEESCCTTT----------HH-HHHHHHHHH--TCEEEEEC
T ss_pred             EEEEcCCCHHH----------HH-HHHHHHHHc--CCCEEEEc
Confidence            99876555542          22 444444433  77888876

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.05  E-value=1.7e-05  Score=67.91  Aligned_cols=109  Identities=14%  Similarity=0.048  Sum_probs=68.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||.|.++...++..+...++|+|+...+...+..       .. ....++..+..++. ..  .+....+|.
T Consensus        91 ~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~-------~~-~~g~~ii~~~~~~d-v~--~l~~~~~Dv  159 (282)
T 3gcz_A           91 TGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM-------RT-TLGWNLIRFKDKTD-VF--NMEVIPGDT  159 (282)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-------CC-BTTGGGEEEECSCC-GG--GSCCCCCSE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc-------cc-cCCCceEEeeCCcc-hh--hcCCCCcCE
Confidence            458999999999999999988777789999998653211100       00 01124444454432 12  255678999


Q ss_pred             EEEeCCCCccc--cccccccccCHHHHHHHHHhhcCC--cEEEEEeCc
Q 025470          146 MFFLFPDPHFK--EKNHRRRVISPHLLDEYAYVLGVG--GIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k--~~h~krr~~~~~~l~~~~~~Lkpg--G~l~~~td~  189 (252)
                      |.......--.  ..|.  |  +..+|+.+..+|+||  |.|+++.-.
T Consensus       160 VLSDmApnsG~~~~D~~--r--s~~LL~~A~~~Lk~g~~G~Fv~KvF~  203 (282)
T 3gcz_A          160 LLCDIGESSPSIAVEEQ--R--TLRVLNCAKQWLQEGNYTEFCIKVLC  203 (282)
T ss_dssp             EEECCCCCCSCHHHHHH--H--HHHHHHHHHHHHHHHCCCEEEEEESC
T ss_pred             EEecCccCCCChHHHHH--H--HHHHHHHHHHHcCCCCCCcEEEEEec
Confidence            99864221110  1111  1  123588888999999  999998755

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.04  E-value=2.6e-05  Score=73.10  Aligned_cols=121  Identities=18%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-------------CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-------------PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK  132 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-------------p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~  132 (252)
                      ...|+|-.||+|.+++..++..             ....++|+|+++.+...|+-++.-.      +..+-.+..+|...
T Consensus       218 ~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lh------g~~~~~I~~~dtL~  291 (530)
T 3ufb_A          218 GESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLH------GLEYPRIDPENSLR  291 (530)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHH------TCSCCEEECSCTTC
T ss_pred             CCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhc------CCcccccccccccc
Confidence            4589999999999998876531             1346999999999998887766443      55555667777642


Q ss_pred             c-cCccCCCCcccEEEEeCCCCccccccc--------cccccCHHHHHHHHHhhc-------CCcEEEEEeCchHH
Q 025470          133 Y-IPNYFEKGQLTKMFFLFPDPHFKEKNH--------RRRVISPHLLDEYAYVLG-------VGGIIYTITDVEEL  192 (252)
Q Consensus       133 ~-l~~~~~~~s~d~i~~~fpdP~~k~~h~--------krr~~~~~~l~~~~~~Lk-------pgG~l~~~td~~~~  192 (252)
                      . +....+...+|.|+.|.|---......        +..-..-.|+..+.+.||       +||++.+++.+-.+
T Consensus       292 ~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gGr~avVlP~g~L  367 (530)
T 3ufb_A          292 FPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGGRAAVVVPNGTL  367 (530)
T ss_dssp             SCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCCEEEEEEEHHHH
T ss_pred             CchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCceEEEEecchhh
Confidence            1 112223457999999987421110000        000112357888888887       69999998875433

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.99  E-value=1.4e-05  Score=69.19  Aligned_cols=46  Identities=24%  Similarity=0.198  Sum_probs=41.0

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL  112 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~  112 (252)
                      ++.+|||++||+|.+++++++.  +..++|||+++.+++.|++++...
T Consensus       235 ~~~~vlD~f~GsGt~~~~a~~~--g~~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          235 VGDVVLDPFAGTGTTLIAAARW--GRRALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4569999999999999998887  578999999999999999888654

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.77  E-value=0.0002  Score=61.78  Aligned_cols=111  Identities=14%  Similarity=0.052  Sum_probs=66.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...||||||+.|.++..++++.+...++|+|+...+.....       .....+ .++..+..++. ..  .+....+|.
T Consensus        82 g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~-------~~~~~~-~~iv~~~~~~d-i~--~l~~~~~Dl  150 (300)
T 3eld_A           82 TGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPI-------HMQTLG-WNIVKFKDKSN-VF--TMPTEPSDT  150 (300)
T ss_dssp             CEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCC-------CCCBTT-GGGEEEECSCC-TT--TSCCCCCSE
T ss_pred             CCEEEEcCCCCCHHHHHHHHhcCCceeeeEEeccccccccc-------cccccC-CceEEeecCce-ee--ecCCCCcCE
Confidence            56999999999999999998876667899999754210000       000001 13333333322 12  245678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~td~  189 (252)
                      |+...... .-. +.....-+..+|+.+..+|+|| |.|+++.-.
T Consensus       151 VlsD~APn-sG~-~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~  193 (300)
T 3eld_A          151 LLCDIGES-SSN-PLVERDRTMKVLENFERWKHVNTENFCVKVLA  193 (300)
T ss_dssp             EEECCCCC-CSS-HHHHHHHHHHHHHHHHHHCCTTCCEEEEEESS
T ss_pred             EeecCcCC-CCC-HHHHHHHHHHHHHHHHHHhcCCCCcEEEEecc
Confidence            98754211 111 0000111234588889999999 999998754

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.73  E-value=3.1e-05  Score=68.12  Aligned_cols=74  Identities=14%  Similarity=0.182  Sum_probs=58.2

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC----
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK----  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~----  140 (252)
                      +.++||..||.|.++..++++ .|...++|+|+++.+++.|+ ++         ...++.+++++..+ +...++.    
T Consensus        58 ggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---------~~~Rv~lv~~nF~~-l~~~L~~~g~~  126 (347)
T 3tka_A           58 DGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---------DDPRFSIIHGPFSA-LGEYVAERDLI  126 (347)
T ss_dssp             TCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---------CCTTEEEEESCGGG-HHHHHHHTTCT
T ss_pred             CCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---------cCCcEEEEeCCHHH-HHHHHHhcCCC
Confidence            569999999999999999998 47889999999999988763 22         23689999999864 4333332    


Q ss_pred             CcccEEEEeC
Q 025470          141 GQLTKMFFLF  150 (252)
Q Consensus       141 ~s~d~i~~~f  150 (252)
                      +++|.|++++
T Consensus       127 ~~vDgILfDL  136 (347)
T 3tka_A          127 GKIDGILLDL  136 (347)
T ss_dssp             TCEEEEEEEC
T ss_pred             CcccEEEECC
Confidence            3699998765

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.69  E-value=0.00016  Score=64.38  Aligned_cols=86  Identities=13%  Similarity=0.145  Sum_probs=62.8

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..+||+||+.|.++..++++  +..|+|||+.+-    .. .+        ...++|.++++|+....   .+...+|
T Consensus       211 ~G~~vlDLGAaPGGWT~~l~~r--g~~V~aVD~~~l----~~-~l--------~~~~~V~~~~~d~~~~~---~~~~~~D  272 (375)
T 4auk_A          211 NGMWAVDLGACPGGWTYQLVKR--NMWVYSVDNGPM----AQ-SL--------MDTGQVTWLREDGFKFR---PTRSNIS  272 (375)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHT--TCEEEEECSSCC----CH-HH--------HTTTCEEEECSCTTTCC---CCSSCEE
T ss_pred             CCCEEEEeCcCCCHHHHHHHHC--CCEEEEEEhhhc----Ch-hh--------ccCCCeEEEeCcccccc---CCCCCcC
Confidence            3568999999999999999998  679999998641    11 11        14578999999986422   3356899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG  180 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg  180 (252)
                      .|+.....++.            ..+..+.++|..|
T Consensus       273 ~vvsDm~~~p~------------~~~~l~~~wl~~~  296 (375)
T 4auk_A          273 WMVCDMVEKPA------------KVAALMAQWLVNG  296 (375)
T ss_dssp             EEEECCSSCHH------------HHHHHHHHHHHTT
T ss_pred             EEEEcCCCChH------------HhHHHHHHHHhcc
Confidence            99987755442            3666677777665

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.68  E-value=0.00016  Score=62.30  Aligned_cols=107  Identities=15%  Similarity=0.155  Sum_probs=71.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~d  144 (252)
                      ...||||||+.|.++...+.+.....|+|+|+-..--+       .-+..+..+...|.++.+ |+. .++    +..+|
T Consensus        95 ~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he-------~P~~~~ql~w~lV~~~~~~Dv~-~l~----~~~~D  162 (321)
T 3lkz_A           95 VGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE-------EPQLVQSYGWNIVTMKSGVDVF-YRP----SECCD  162 (321)
T ss_dssp             CEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC-------CCCCCCBTTGGGEEEECSCCTT-SSC----CCCCS
T ss_pred             CCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc-------CcchhhhcCCcceEEEeccCHh-hCC----CCCCC
Confidence            45999999999999998888876668999998654100       000001123345888887 764 333    46689


Q ss_pred             EEEEeC----CCCccccccccccccCHHHHHHHHHhhcCC-cEEEEEeCch
Q 025470          145 KMFFLF----PDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTITDVE  190 (252)
Q Consensus       145 ~i~~~f----pdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~td~~  190 (252)
                      .|++..    |+|+...    .|.  -..|+.+.++|++| |.|+++.-..
T Consensus       163 ~ivcDigeSs~~~~ve~----~Rt--l~vLel~~~wL~~~~~~f~~KVl~p  207 (321)
T 3lkz_A          163 TLLCDIGESSSSAEVEE----HRT--IRVLEMVEDWLHRGPREFCVKVLCP  207 (321)
T ss_dssp             EEEECCCCCCSCHHHHH----HHH--HHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred             EEEEECccCCCChhhhh----hHH--HHHHHHHHHHhccCCCcEEEEEcCC
Confidence            998765    3444221    111  12788889999999 9999987655

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.57  E-value=8.8e-05  Score=62.71  Aligned_cols=104  Identities=12%  Similarity=0.076  Sum_probs=60.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC----CeEEEEec--CHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE----VLMIGMEL--RDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~----~~~iGiDi--s~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~  138 (252)
                      ...|||+||+.|.++...+++-+-    ..++|+|+  .+-..             ...+..=+.|.++ |+.+     +
T Consensus        74 g~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------------~~~Gv~~i~~~~G~Df~~-----~  135 (269)
T 2px2_A           74 IGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------------QSYGWNIVTMKSGVDVFY-----K  135 (269)
T ss_dssp             CEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------------CSTTGGGEEEECSCCGGG-----S
T ss_pred             CCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------------cCCCceEEEeeccCCccC-----C
Confidence            569999999999999999987222    23455552  11000             0011122355556 8763     3


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCc-EEEEEeCc
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGG-IIYTITDV  189 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG-~l~~~td~  189 (252)
                      ....+|.|.......-....-..-|.+.  .|+.+.++|+||| .|+++.-.
T Consensus       136 ~~~~~DvVLSDMAPnSG~~~vD~~Rs~~--aL~~A~~~Lk~gG~~FvvKVFq  185 (269)
T 2px2_A          136 PSEISDTLLCDIGESSPSAEIEEQRTLR--ILEMVSDWLSRGPKEFCIKILC  185 (269)
T ss_dssp             CCCCCSEEEECCCCCCSCHHHHHHHHHH--HHHHHHHHHTTCCSEEEEEESC
T ss_pred             CCCCCCEEEeCCCCCCCccHHHHHHHHH--HHHHHHHHhhcCCcEEEEEECC
Confidence            3457899988652211111111112222  6777779999999 88887754

>3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A*

Probab=97.57  E-value=0.00025  Score=61.70  Aligned_cols=128  Identities=18%  Similarity=0.153  Sum_probs=73.3

Q ss_pred             ceEEEEcCcccHHHHHHH----HHCCCC--eEEEEecCH--------hHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025470           67 IQFADIGCGFGGLLISLS----TLFPEV--LMIGMELRD--------KVTEYVKERILALRVSNPGQYQNISVVRTNSMK  132 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA----~~~p~~--~~iGiDis~--------~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~  132 (252)
                      -.|||+|+|+|...+...    +..|..  .++++|..+        .........+...-..-..+.-.+.++.+|+.+
T Consensus        98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~  177 (308)
T 3vyw_A           98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK  177 (308)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred             cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence            479999999998654322    336654  568888532        111111111111100001122246788999988


Q ss_pred             ccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          133 YIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       133 ~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      .++. +....+|.||+.-   ..-.+.  .-+=+..+++.+++.++|||+|.--|-    +-.+...|.+.+
T Consensus       178 ~l~~-l~~~~~Da~flDg---FsP~kN--PeLWs~e~f~~l~~~~~pgg~laTYta----ag~VRR~L~~aG  239 (308)
T 3vyw_A          178 RIKE-VENFKADAVFHDA---FSPYKN--PELWTLDFLSLIKERIDEKGYWVSYSS----SLSVRKSLLTLG  239 (308)
T ss_dssp             HGGG-CCSCCEEEEEECC---SCTTTS--GGGGSHHHHHHHHTTEEEEEEEEESCC----CHHHHHHHHHTT
T ss_pred             HHhh-hcccceeEEEeCC---CCcccC--cccCCHHHHHHHHHHhCCCcEEEEEeC----cHHHHHHHHHCC
Confidence            7765 4455799999842   110000  112256899999999999999875442    234455566555

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.50  E-value=0.00046  Score=57.67  Aligned_cols=105  Identities=15%  Similarity=0.177  Sum_probs=71.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-CcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-NSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-da~~~l~~~~~~~s~d  144 (252)
                      ...||||||+.|.++...+.+.....|+|+|+-..--+       .-+..+..+...|.|..+ |+. .++    +..+|
T Consensus        79 g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe-------~P~~~~s~gwn~v~fk~gvDv~-~~~----~~~~D  146 (267)
T 3p8z_A           79 EGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHE-------EPVPMSTYGWNIVKLMSGKDVF-YLP----PEKCD  146 (267)
T ss_dssp             CEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-------CCCCCCCTTTTSEEEECSCCGG-GCC----CCCCS
T ss_pred             CCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCcc-------CcchhhhcCcCceEEEecccee-ecC----Ccccc
Confidence            45999999999999999999877778999998753110       000112345678999998 864 233    46699


Q ss_pred             EEEEeC----CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLF----PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~f----pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|.+..    |+|+..  +  .|.  -..|+.+.++|++ |.|+++.-.
T Consensus       147 tllcDIgeSs~~~~vE--~--~Rt--lrvLela~~wL~~-~~fc~KVl~  188 (267)
T 3p8z_A          147 TLLCDIGESSPSPTVE--E--SRT--IRVLKMVEPWLKN-NQFCIKVLN  188 (267)
T ss_dssp             EEEECCCCCCSCHHHH--H--HHH--HHHHHHHGGGCSS-CEEEEEESC
T ss_pred             EEEEecCCCCCChhhh--h--hHH--HHHHHHHHHhccc-CCEEEEEcc
Confidence            999865    333321  1  111  1278888899999 888887644

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.42  E-value=0.00027  Score=62.77  Aligned_cols=58  Identities=9%  Similarity=0.173  Sum_probs=46.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK  132 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~  132 (252)
                      ...|||||.|.|.++..|+.......+++||+++..+...++..         ..+|+.++.+|+..
T Consensus        59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~---------~~~~l~ii~~D~l~  116 (353)
T 1i4w_A           59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---------EGSPLQILKRDPYD  116 (353)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---------TTSSCEEECSCTTC
T ss_pred             CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc---------cCCCEEEEECCccc
Confidence            46899999999999999999754457999999999876654432         24689999999853

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.37  E-value=0.00028  Score=59.82  Aligned_cols=44  Identities=16%  Similarity=0.071  Sum_probs=39.4

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERIL  110 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~  110 (252)
                      ++.+|||..||+|..+++.++.  +.+++|+|+++.+++.|.+++.
T Consensus       212 ~~~~vlD~f~GsGtt~~~a~~~--gr~~ig~e~~~~~~~~~~~r~~  255 (260)
T 1g60_A          212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN  255 (260)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCCCHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHH
Confidence            4679999999999999998888  6799999999999999988764

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.06  E-value=0.00075  Score=64.94  Aligned_cols=123  Identities=20%  Similarity=0.215  Sum_probs=77.3

Q ss_pred             ceEEEEcCcccHHHHHHHHH-------CCC-----CeEEEEecCH---hHHHHHHHH-------HHHHhhcC--------
Q 025470           67 IQFADIGCGFGGLLISLSTL-------FPE-----VLMIGMELRD---KVTEYVKER-------ILALRVSN--------  116 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~-------~p~-----~~~iGiDis~---~~i~~a~~~-------~~~~~~~~--------  116 (252)
                      -+|+|+|+|+|...+.+.+.       +|.     ..|+.+|..+   +-+..|...       ...+...-        
T Consensus        60 ~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  139 (689)
T 3pvc_A           60 CIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAGCH  139 (689)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSEEE
T ss_pred             eEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCCce
Confidence            48999999999988877664       232     5799999955   333322110       00110000        


Q ss_pred             ----CCCcccEEEEeCCcccccCccC--CCCcccEEEEeC------CCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          117 ----PGQYQNISVVRTNSMKYIPNYF--EKGQLTKMFFLF------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       117 ----~~~~~nv~~~~~da~~~l~~~~--~~~s~d~i~~~f------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                          ..+.-.+.++.+|+.+.|+..-  ....+|.+|+.-      |+-|           +..++..++++++|||++.
T Consensus       140 r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~~np~~w-----------~~~~~~~l~~~~~~g~~~~  208 (689)
T 3pvc_A          140 RILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPAKNPDMW-----------NEQLFNAMARMTRPGGTFS  208 (689)
T ss_dssp             EEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC--CCTTC-----------SHHHHHHHHHHEEEEEEEE
T ss_pred             EEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCCCChhhh-----------hHHHHHHHHHHhCCCCEEE
Confidence                0111257889999988776432  146799999842      3334           5589999999999999987


Q ss_pred             EEeCchHHHHHHHHHHhcCC
Q 025470          185 TITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       185 ~~td~~~~~~~~~~~~~~~~  204 (252)
                      .-+-.    ..+...+.+.+
T Consensus       209 t~~~~----~~vr~~l~~aG  224 (689)
T 3pvc_A          209 TFTAA----GFVRRGLQQAG  224 (689)
T ss_dssp             ESCCC----HHHHHHHHHTT
T ss_pred             eccCc----HHHHHHHHhCC
Confidence            65533    23455555554

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=96.94  E-value=0.0015  Score=57.60  Aligned_cols=78  Identities=12%  Similarity=0.199  Sum_probs=53.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||+.||.|.+.+.+..+.-. ..++++|+++.+++..+.|.           ++..++.+|+.+.....++...+|.
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-----------~~~~~~~~Di~~~~~~~~~~~~~D~   71 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----------PHTQLLAKTIEGITLEEFDRLSFDM   71 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----------TTSCEECSCGGGCCHHHHHHHCCSE
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-----------cccccccCCHHHccHhHcCcCCcCE
Confidence            47999999999999999988421 36899999999887665543           2345778898753222222226899


Q ss_pred             EEEeCCCCcc
Q 025470          146 MFFLFPDPHF  155 (252)
Q Consensus       146 i~~~fpdP~~  155 (252)
                      |+..+|..-+
T Consensus        72 l~~gpPCq~f   81 (343)
T 1g55_A           72 ILMSPPCQPF   81 (343)
T ss_dssp             EEECCC----
T ss_pred             EEEcCCCcch
Confidence            9999885443

>3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A*

Probab=96.90  E-value=0.0027  Score=53.81  Aligned_cols=109  Identities=20%  Similarity=0.283  Sum_probs=70.9

Q ss_pred             ceEEEEcCcccHHHHHHHHH-------CCCCeEEEEecCHhHH------------------------HHHHHHHHHHhhc
Q 025470           67 IQFADIGCGFGGLLISLSTL-------FPEVLMIGMELRDKVT------------------------EYVKERILALRVS  115 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~-------~p~~~~iGiDis~~~i------------------------~~a~~~~~~~~~~  115 (252)
                      ..|+|+||-.|..++.+|..       +++..++|+|--..+-                        +...+.+......
T Consensus        71 G~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~~~~~  150 (257)
T 3tos_A           71 GVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDAHECS  150 (257)
T ss_dssp             SEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHHHHTT
T ss_pred             CeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHHHhhh
Confidence            37999999999999998763       4678999999211110                        1111111111001


Q ss_pred             CCCC--cccEEEEeCCcccccCccC---CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          116 NPGQ--YQNISVVRTNSMKYIPNYF---EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       116 ~~~~--~~nv~~~~~da~~~l~~~~---~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ...+  .+||.++.+++.+.|+.++   +...+|.+++.. | +..        -....++.+...|+|||.|++
T Consensus       151 ~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~-D-~Y~--------~t~~~le~~~p~l~~GGvIv~  215 (257)
T 3tos_A          151 DFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDL-D-LYE--------PTKAVLEAIRPYLTKGSIVAF  215 (257)
T ss_dssp             STTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECC-C-CHH--------HHHHHHHHHGGGEEEEEEEEE
T ss_pred             hhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcC-c-ccc--------hHHHHHHHHHHHhCCCcEEEE
Confidence            1122  2789999999988777543   345799999875 3 210        122578899999999999987

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=96.89  E-value=0.0049  Score=55.11  Aligned_cols=124  Identities=10%  Similarity=0.027  Sum_probs=74.9

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-----CCCc
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-----EKGQ  142 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-----~~~s  142 (252)
                      .+||+-||.|.+++.+.++. -..+.++|+++.+++..+.|           .++..++.+|+.+.....+     ....
T Consensus         4 ~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N-----------~~~~~~~~~DI~~~~~~~~~~~~~~~~~   71 (376)
T 3g7u_A            4 NVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAIN-----------FPRSLHVQEDVSLLNAEIIKGFFKNDMP   71 (376)
T ss_dssp             EEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHH-----------CTTSEEECCCGGGCCHHHHHHHHCSCCC
T ss_pred             eEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHh-----------CCCCceEecChhhcCHHHHHhhcccCCC
Confidence            69999999999999999884 23467999999877654433           3467788899875322112     3467


Q ss_pred             ccEEEEeCCCCcccccccc-----ccccCHHHHHHHHHhhcCCcEEE------EEeCchHHHHHHHHHHhcCCC
Q 025470          143 LTKMFFLFPDPHFKEKNHR-----RRVISPHLLDEYAYVLGVGGIIY------TITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~k-----rr~~~~~~l~~~~~~LkpgG~l~------~~td~~~~~~~~~~~~~~~~~  205 (252)
                      +|.|+..+|..-+.....+     |.-+...+++ +...++|.-.++      +..+...++..+. .+.+.++
T Consensus        72 ~D~i~ggpPCQ~fS~ag~~~~~d~r~~L~~~~~~-~v~~~~P~~~v~ENV~gl~s~~~~~~~~~i~-~l~~~GY  143 (376)
T 3g7u_A           72 IDGIIGGPPCQGFSSIGKGNPDDSRNQLYMHFYR-LVSELQPLFFLAENVPGIMQEKYSGIRNKAF-NLVSGDY  143 (376)
T ss_dssp             CCEEEECCCCCTTC-------CHHHHHHHHHHHH-HHHHHCCSEEEEEECTTTTCGGGHHHHHHHH-HHHHTTE
T ss_pred             eeEEEecCCCCCcccccCCCCCCchHHHHHHHHH-HHHHhCCCEEEEecchHhhccCcHHHHHHHH-HHHcCCC
Confidence            9999999886544322111     1111122332 334456754444      2223345677777 7766543

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=96.83  E-value=0.0078  Score=57.59  Aligned_cols=119  Identities=15%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             CceEEEEcCcccHHHHHHHHH-------CCC-----CeEEEEec---CHhHHHHHHH-----------HHHHHhhcC---
Q 025470           66 KIQFADIGCGFGGLLISLSTL-------FPE-----VLMIGMEL---RDKVTEYVKE-----------RILALRVSN---  116 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-------~p~-----~~~iGiDi---s~~~i~~a~~-----------~~~~~~~~~---  116 (252)
                      ..+|||+|+|+|...+...+.       +|.     ..|+++|.   +.+.+..+..           .+.......   
T Consensus        67 ~~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~  146 (676)
T 3ps9_A           67 LFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGC  146 (676)
T ss_dssp             EEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEE
T ss_pred             ceEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCc
Confidence            358999999999988766554       232     45999999   6655543322           111110000   


Q ss_pred             -----CCCcccEEEEeCCcccccCccC--CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          117 -----PGQYQNISVVRTNSMKYIPNYF--EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       117 -----~~~~~nv~~~~~da~~~l~~~~--~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                           ..+.-.+.+..+|+.+.++..-  ....+|.+|+.--.|-   +.  .-+=+..++..++++++|||++...+-.
T Consensus       147 ~~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~---~n--p~~w~~~~~~~l~~~~~~g~~~~t~~~~  221 (676)
T 3ps9_A          147 HRLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPA---KN--PDMWTQNLFNAMARLARPGGTLATFTSA  221 (676)
T ss_dssp             EEEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGG---GC--GGGSCHHHHHHHHHHEEEEEEEEESCCC
T ss_pred             eEEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCc---CC--hhhhhHHHHHHHHHHhCCCCEEEeccCc
Confidence                 0011346788899987776431  1367999988421111   00  1123568999999999999998765543

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.72  E-value=0.0057  Score=55.24  Aligned_cols=64  Identities=13%  Similarity=0.095  Sum_probs=50.1

Q ss_pred             CCceEEEEcCcccHHHHHHH-HHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLS-TLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSM  131 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA-~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~  131 (252)
                      +..+++|||++.|.++..+| +..+. ..++++|.++...+..++++...   .+++. +|+.++..-+.
T Consensus       226 ~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~---~N~~~~~~v~~~~~al~  292 (409)
T 2py6_A          226 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRY---TDTNFASRITVHGCGAG  292 (409)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHT---TTSTTGGGEEEECSEEC
T ss_pred             CCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhh---hccCCCCCEEEEEeEEE
Confidence            36699999999999999988 56654 79999999999998888877541   11345 78888876543

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=96.61  E-value=0.013  Score=50.54  Aligned_cols=101  Identities=17%  Similarity=0.203  Sum_probs=65.7

Q ss_pred             CCCceEEEEcC------cccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc
Q 025470           64 SKKIQFADIGC------GFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN  136 (252)
Q Consensus        64 ~~~~~vLDIGc------G~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~  136 (252)
                      +.+.+|||+|+      -.|.+  .+.+..|. ..++++|+.+-.                 ...+ .++++|... +. 
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------------sda~-~~IqGD~~~-~~-  165 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------------SDAD-STLIGDCAT-VH-  165 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------------CSSS-EEEESCGGG-EE-
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------------cCCC-eEEEccccc-cc-
Confidence            34679999996      66773  55556776 699999997621                 1223 458999753 22 


Q ss_pred             cCCCCcccEEEEeCCCCccccccccc-cc--cCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          137 YFEKGQLTKMFFLFPDPHFKEKNHRR-RV--ISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       137 ~~~~~s~d~i~~~fpdP~~k~~h~kr-r~--~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                        ..+.+|.|+.....+-.......+ |.  +.+..++-+.+.|+|||.|+++.-
T Consensus       166 --~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVF  218 (344)
T 3r24_A          166 --TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKIT  218 (344)
T ss_dssp             --ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             --cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEe
Confidence              247799999876444333222211 22  235566777889999999999863

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=96.31  E-value=0.023  Score=49.75  Aligned_cols=128  Identities=12%  Similarity=0.054  Sum_probs=76.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHC-CCCeE-EEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLF-PEVLM-IGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~-p~~~~-iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...++|+-||.|.+...+.+.. +...+ .++|+++.+++.-+.|.         .  +. ++.+|+.+.-...++...+
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~---------~--~~-~~~~DI~~~~~~~i~~~~~   77 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF---------K--EE-VQVKNLDSISIKQIESLNC   77 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH---------C--CC-CBCCCTTTCCHHHHHHTCC
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC---------C--CC-cccCChhhcCHHHhccCCC
Confidence            3489999999999999998874 22345 79999998876655543         1  11 5567876422222333368


Q ss_pred             cEEEEeCCCCcc--ccccccccc--cCHHHHHHHHH-hhcC---CcEEEEEeCchH-----HHHHHHHHHhcCCC
Q 025470          144 TKMFFLFPDPHF--KEKNHRRRV--ISPHLLDEYAY-VLGV---GGIIYTITDVEE-----LGDWMRSCLENHPM  205 (252)
Q Consensus       144 d~i~~~fpdP~~--k~~h~krr~--~~~~~l~~~~~-~Lkp---gG~l~~~td~~~-----~~~~~~~~~~~~~~  205 (252)
                      |.++..+|..-+  .....++..  ....++.++.+ +++.   .-.+++.-++..     .+..+.+.+.+.++
T Consensus        78 Dil~ggpPCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV~gl~~~~~~~~i~~~l~~~GY  152 (327)
T 3qv2_A           78 NTWFMSPPCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENVPLFKESLVFKEIYNILIKNQY  152 (327)
T ss_dssp             CEEEECCCCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEECGGGGGSHHHHHHHHHHHHTTC
T ss_pred             CEEEecCCccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEchhhhcChHHHHHHHHHHHhCCC
Confidence            999999886655  211111111  11245666666 5542   234555444433     45667777776554

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=96.24  E-value=0.012  Score=51.78  Aligned_cols=95  Identities=9%  Similarity=0.082  Sum_probs=61.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC------cccccCccC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN------SMKYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d------a~~~l~~~~  138 (252)
                      ...||-+|+|. |.+++.+|+......++++|.++..++.+++    +      +.+.+  +..+      ..+.+....
T Consensus       172 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----l------Ga~~v--i~~~~~~~~~~~~~i~~~~  239 (356)
T 1pl8_A          172 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE----I------GADLV--LQISKESPQEIARKVEGQL  239 (356)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----T------TCSEE--EECSSCCHHHHHHHHHHHH
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----h------CCCEE--EcCcccccchHHHHHHHHh
Confidence            55788899987 8889999998643389999999987766542    1      44422  2222      111111111


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      . ..+|.|+-.-..              ...++...+.|++||++++..
T Consensus       240 ~-~g~D~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~G  273 (356)
T 1pl8_A          240 G-CKPEVTIECTGA--------------EASIQAGIYATRSGGTLVLVG  273 (356)
T ss_dssp             T-SCCSEEEECSCC--------------HHHHHHHHHHSCTTCEEEECS
T ss_pred             C-CCCCEEEECCCC--------------hHHHHHHHHHhcCCCEEEEEe
Confidence            2 457888755432              237788899999999998753

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.19  E-value=0.037  Score=48.41  Aligned_cols=121  Identities=11%  Similarity=0.107  Sum_probs=73.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...+||+.||.|.+.+.+..+. -..+.++|+++.+++..+.+..        ...     .+|+.+.....++  .+|.
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~~--------~~~-----~~Di~~~~~~~~~--~~D~   74 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFG--------EKP-----EGDITQVNEKTIP--DHDI   74 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHS--------CCC-----BSCGGGSCGGGSC--CCSE
T ss_pred             CCcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHcC--------CCC-----cCCHHHcCHhhCC--CCCE
Confidence            3589999999999999998874 3357899999988876665541        111     6887753333333  4899


Q ss_pred             EEEeCCCCccccccccc-----c-ccCHHHHHHHHHhhcCCcEEEEEeCch--------HHHHHHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHRR-----R-VISPHLLDEYAYVLGVGGIIYTITDVE--------ELGDWMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~kr-----r-~~~~~~l~~~~~~LkpgG~l~~~td~~--------~~~~~~~~~~~~~~~  205 (252)
                      |+..+|..-+.....++     | -+...+++.+ +.++|.  +++.-++.        ..+..+.+.+.+.++
T Consensus        75 l~~gpPCQ~fS~ag~~~g~~d~r~~L~~~~~r~i-~~~~P~--~~~~ENV~gl~~~~~~~~~~~i~~~l~~~GY  145 (327)
T 2c7p_A           75 LCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIV-REKKPK--VVFMENVKNFASHDNGNTLEVVKNTMNELDY  145 (327)
T ss_dssp             EEEECCCTTTCTTSCCCGGGSTTSCHHHHHHHHH-HHHCCS--EEEEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred             EEECCCCCCcchhcccCCCcchhhHHHHHHHHHH-HhccCc--EEEEeCcHHHHhccccHHHHHHHHHHHhCCC
Confidence            99998865543221111     1 1112333333 345775  33323322        356677777776554

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.07  E-value=0.0049  Score=52.84  Aligned_cols=120  Identities=10%  Similarity=0.019  Sum_probs=81.4

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC-CcccEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK-GQLTKM  146 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~-~s~d~i  146 (252)
                      .+||+=+|||.+++.+.+.  ...++.+|.++..++..++++.        ...++++++.|+...+....++ ..+|.|
T Consensus        94 ~~LDlfaGSGaLgiEaLS~--~d~~vfvE~~~~a~~~L~~Nl~--------~~~~~~V~~~D~~~~L~~l~~~~~~fdLV  163 (283)
T 2oo3_A           94 STLSYYPGSPYFAINQLRS--QDRLYLCELHPTEYNFLLKLPH--------FNKKVYVNHTDGVSKLNALLPPPEKRGLI  163 (283)
T ss_dssp             SSCCEEECHHHHHHHHSCT--TSEEEEECCSHHHHHHHTTSCC--------TTSCEEEECSCHHHHHHHHCSCTTSCEEE
T ss_pred             CceeEeCCcHHHHHHHcCC--CCeEEEEeCCHHHHHHHHHHhC--------cCCcEEEEeCcHHHHHHHhcCCCCCccEE
Confidence            5899999999999998884  5689999999988766555431        2467999999987656433333 368998


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeCc--hHHHHHHHHHHhcCCC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITDV--EELGDWMRSCLENHPM  205 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td~--~~~~~~~~~~~~~~~~  205 (252)
                      ++   ||.+....     .....++.+..  .+.|+|++.+-...  ....+.|.+.+...+.
T Consensus       164 fi---DPPYe~k~-----~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~~~~~l~~~~~  218 (283)
T 2oo3_A          164 FI---DPSYERKE-----EYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQFLRKMREISS  218 (283)
T ss_dssp             EE---CCCCCSTT-----HHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHHHHHHHHHHCS
T ss_pred             EE---CCCCCCCc-----HHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHHHHHHHHhcCC
Confidence            88   45443111     11235555554  45689999986543  4456677777765443

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=95.89  E-value=0.011  Score=51.74  Aligned_cols=99  Identities=17%  Similarity=0.157  Sum_probs=64.3

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...||=+|+|. |..++.+|+......++++|.+++.++.+++    +      +.+.+.-...|..+.+........+
T Consensus       171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~----l------Ga~~~i~~~~~~~~~v~~~t~g~g~  240 (345)
T 3jv7_A          171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALARE----V------GADAAVKSGAGAADAIRELTGGQGA  240 (345)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHH----T------TCSEEEECSTTHHHHHHHHHGGGCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----c------CCCEEEcCCCcHHHHHHHHhCCCCC
Confidence            356888899987 8888999998766799999999987776643    1      4333211111222112111112357


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+-.-..              ...++...+.|++||++++.-
T Consensus       241 d~v~d~~G~--------------~~~~~~~~~~l~~~G~iv~~G  270 (345)
T 3jv7_A          241 TAVFDFVGA--------------QSTIDTAQQVVAVDGHISVVG  270 (345)
T ss_dssp             EEEEESSCC--------------HHHHHHHHHHEEEEEEEEECS
T ss_pred             eEEEECCCC--------------HHHHHHHHHHHhcCCEEEEEC
Confidence            777754432              248889999999999998753

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=95.82  E-value=0.017  Score=51.04  Aligned_cols=95  Identities=17%  Similarity=0.270  Sum_probs=62.2

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~  140 (252)
                      ....||-+|||. |..++.+|+......++++|.+++.++.+++    +      +.+.+  +..   |..+.+... ..
T Consensus       190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~----l------Ga~~v--i~~~~~~~~~~~~~~-~~  256 (371)
T 1f8f_A          190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----L------GATHV--INSKTQDPVAAIKEI-TD  256 (371)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----H------TCSEE--EETTTSCHHHHHHHH-TT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----c------CCCEE--ecCCccCHHHHHHHh-cC
Confidence            356899999987 8889999988633369999999988776643    2      33322  221   221112211 12


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +.+|.|+-.-..              ...++...+.|++||++++.
T Consensus       257 gg~D~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  288 (371)
T 1f8f_A          257 GGVNFALESTGS--------------PEILKQGVDALGILGKIAVV  288 (371)
T ss_dssp             SCEEEEEECSCC--------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCcEEEECCCC--------------HHHHHHHHHHHhcCCEEEEe
Confidence            367877754332              24788899999999999875

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=95.81  E-value=0.0092  Score=53.35  Aligned_cols=108  Identities=11%  Similarity=0.027  Sum_probs=63.4

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---Cc-ccccCccCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NS-MKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da-~~~l~~~~~  139 (252)
                      ....||-+|||. |.+++.+|+......++++|.+++.++.+++          .+..   ++..   |. .+.+.....
T Consensus       185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----------lGa~---~i~~~~~~~~~~~~~~~~~  251 (398)
T 2dph_A          185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD----------AGFE---TIDLRNSAPLRDQIDQILG  251 (398)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT----------TTCE---EEETTSSSCHHHHHHHHHS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----------cCCc---EEcCCCcchHHHHHHHHhC
Confidence            356899999987 8899999998643389999999987765532          1432   2322   21 111211111


Q ss_pred             CCcccEEEEeCCCCcccc-ccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKE-KNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~-~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ...+|.|+-.-..+.... .... -+.....++.+.+.|++||++++.
T Consensus       252 g~g~Dvvid~~g~~~~~~~~~~~-~~~~~~~~~~~~~~l~~gG~iv~~  298 (398)
T 2dph_A          252 KPEVDCGVDAVGFEAHGLGDEAN-TETPNGALNSLFDVVRAGGAIGIP  298 (398)
T ss_dssp             SSCEEEEEECSCTTCBCSGGGTT-SBCTTHHHHHHHHHEEEEEEEECC
T ss_pred             CCCCCEEEECCCCcccccccccc-ccccHHHHHHHHHHHhcCCEEEEe
Confidence            225888876554332000 0000 000123788899999999999764

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=95.72  E-value=0.034  Score=48.68  Aligned_cols=96  Identities=11%  Similarity=0.054  Sum_probs=60.8

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe--CCcccccCccCC---
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR--TNSMKYIPNYFE---  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~--~da~~~l~~~~~---  139 (252)
                      ...||-+|+|. |..++.+|+.. +..++++|.+++.++.+++    +      +.+.+--..  .|..+.+.....   
T Consensus       169 g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~~~~~~~~~~~~~~i~~~~~~~~  237 (352)
T 1e3j_A          169 GTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN----C------GADVTLVVDPAKEEESSIIERIRSAI  237 (352)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----T------TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCEEEEEcCCHHHHHHHHH----h------CCCEEEcCcccccHHHHHHHHhcccc
Confidence            55788899986 88888999886 5569999999987766542    1      443221111  121111211111   


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ...+|.|+-.-..              ...++...+.|+++|++++.
T Consensus       238 g~g~D~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  270 (352)
T 1e3j_A          238 GDLPNVTIDCSGN--------------EKCITIGINITRTGGTLMLV  270 (352)
T ss_dssp             SSCCSEEEECSCC--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCCEEEECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            2357888755432              13778889999999999875

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=95.68  E-value=0.011  Score=51.65  Aligned_cols=44  Identities=14%  Similarity=-0.002  Sum_probs=38.2

Q ss_pred             CCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHH
Q 025470           64 SKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERI  109 (252)
Q Consensus        64 ~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~  109 (252)
                      .++.+|||.-||+|..+.+..+.  +.+++|+|+++..++.|..++
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~--gr~~ig~e~~~~~~~~~~~r~  294 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRF  294 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHH
Confidence            35679999999999999988887  679999999999988887665

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.53  E-value=0.023  Score=49.81  Aligned_cols=128  Identities=9%  Similarity=0.123  Sum_probs=73.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      -.++|+-||.|.+...+.+..- ...+.++|+++.+++.-+.|           .++..++.+|+.+.....++...+|.
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N-----------~~~~~~~~~DI~~~~~~~~~~~~~D~   72 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHN-----------FPETNLLNRNIQQLTPQVIKKWNVDT   72 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-----------CTTSCEECCCGGGCCHHHHHHTTCCE
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHh-----------CCCCceeccccccCCHHHhccCCCCE
Confidence            3799999999999999988843 24578999999876544433           23345677888753222233346899


Q ss_pred             EEEeCCCCccccccccccccC--HHHHHHHHHhhcC-C-cEEEEEeCchH-----HHHHHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVIS--PHLLDEYAYVLGV-G-GIIYTITDVEE-----LGDWMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~--~~~l~~~~~~Lkp-g-G~l~~~td~~~-----~~~~~~~~~~~~~~  205 (252)
                      ++..+|..-+.....++..-.  ..++-++.++++. . -.+++.-++..     ..+.+.+.+.+.++
T Consensus        73 l~ggpPCQ~fS~ag~~~~~~d~r~~L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY  141 (333)
T 4h0n_A           73 ILMSPPCQPFTRNGKYLDDNDPRTNSFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNF  141 (333)
T ss_dssp             EEECCCCCCSEETTEECCTTCTTSCCHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTE
T ss_pred             EEecCCCcchhhhhhccCCcCcccccHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCC
Confidence            999888655432211111111  1233344444432 1 24444444332     35666777766543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=95.45  E-value=0.018  Score=50.30  Aligned_cols=45  Identities=9%  Similarity=-0.160  Sum_probs=38.4

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCH---hHHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRD---KVTEYVKERILA  111 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~---~~i~~a~~~~~~  111 (252)
                      ++.+|||--||+|..+.+..+.  +..++|+|+++   ..++.|.+++..
T Consensus       242 ~~~~vlDpF~GsGtt~~aa~~~--~r~~ig~e~~~~~~~~~~~~~~Rl~~  289 (319)
T 1eg2_A          242 PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFLQD  289 (319)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC--
T ss_pred             CCCEEEecCCCCCHHHHHHHHc--CCcEEEEECCccHHHHHHHHHHHHHH
Confidence            4679999999999999999988  67999999999   888888777643

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=95.26  E-value=0.033  Score=48.72  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=62.3

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe---CCcccccCccCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR---TNSMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~---~da~~~l~~~~~~  140 (252)
                      +...||=+|+|. |.+++.+|+......++++|.+++.++.+++    +      +.+.  ++.   .|..+.+......
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----l------Ga~~--vi~~~~~~~~~~v~~~t~g  233 (352)
T 3fpc_A          166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALE----Y------GATD--IINYKNGDIVEQILKATDG  233 (352)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHH----H------TCCE--EECGGGSCHHHHHHHHTTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH----h------CCce--EEcCCCcCHHHHHHHHcCC
Confidence            355788889987 8888889987643379999999987766643    2      3332  222   1222222222223


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ..+|.|+-....+              ..++...+.|++||++++.
T Consensus       234 ~g~D~v~d~~g~~--------------~~~~~~~~~l~~~G~~v~~  265 (352)
T 3fpc_A          234 KGVDKVVIAGGDV--------------HTFAQAVKMIKPGSDIGNV  265 (352)
T ss_dssp             CCEEEEEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCh--------------HHHHHHHHHHhcCCEEEEe
Confidence            3588887654433              3788899999999999864

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=95.20  E-value=0.033  Score=49.10  Aligned_cols=96  Identities=16%  Similarity=0.161  Sum_probs=62.1

Q ss_pred             CceEEEEc-Ccc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIG-CGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIG-cG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=+| +|. |.+++.+|+...+..++++|.+++.++.+++    +      +.+.+--...|..+.+... ..+.+
T Consensus       172 g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~----l------Gad~vi~~~~~~~~~v~~~-~~~g~  240 (363)
T 4dvj_A          172 APAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKS----L------GAHHVIDHSKPLAAEVAAL-GLGAP  240 (363)
T ss_dssp             EEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHH----T------TCSEEECTTSCHHHHHHTT-CSCCE
T ss_pred             CCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHH----c------CCCEEEeCCCCHHHHHHHh-cCCCc
Confidence            45788888 655 8899999987557799999999887766543    2      4332211111222222222 34567


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+-.-..              ...++.+.+.|++||++++.
T Consensus       241 Dvvid~~g~--------------~~~~~~~~~~l~~~G~iv~~  269 (363)
T 4dvj_A          241 AFVFSTTHT--------------DKHAAEIADLIAPQGRFCLI  269 (363)
T ss_dssp             EEEEECSCH--------------HHHHHHHHHHSCTTCEEEEC
T ss_pred             eEEEECCCc--------------hhhHHHHHHHhcCCCEEEEE
Confidence            877654321              24788999999999999875

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=95.17  E-value=0.036  Score=49.32  Aligned_cols=108  Identities=12%  Similarity=0.039  Sum_probs=63.4

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---C-cccccCccCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---N-SMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---d-a~~~l~~~~~~  140 (252)
                      ...||-+|||. |.+++.+|+......++++|.+++.++.+++    +      +.+   .+..   + ..+.+......
T Consensus       186 g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~----l------Ga~---~i~~~~~~~~~~~v~~~t~g  252 (398)
T 1kol_A          186 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA----Q------GFE---IADLSLDTPLHEQIAALLGE  252 (398)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----T------TCE---EEETTSSSCHHHHHHHHHSS
T ss_pred             CCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH----c------CCc---EEccCCcchHHHHHHHHhCC
Confidence            55788899987 8899999998744479999999987776643    1      443   2221   1 11112111122


Q ss_pred             CcccEEEEeCCCCcccc-ccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKE-KNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~-~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ..+|.|+-.-..+.... ...-........++...+.|++||++++.
T Consensus       253 ~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~  299 (398)
T 1kol_A          253 PEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  299 (398)
T ss_dssp             SCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEe
Confidence            35788876544331000 00000001124788999999999999774

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=95.17  E-value=0.032  Score=48.51  Aligned_cols=94  Identities=14%  Similarity=0.171  Sum_probs=61.5

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe--CCcccccCccCCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR--TNSMKYIPNYFEKG  141 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~--~da~~~l~~~~~~~  141 (252)
                      +...||-+|+|. |..++.+|+.. +.+++++|.+++.++.+++    +      +.+.+ +-.  .|..+.+..  ..+
T Consensus       166 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~~-i~~~~~~~~~~~~~--~~g  231 (340)
T 3s2e_A          166 PGQWVVISGIGGLGHVAVQYARAM-GLRVAAVDIDDAKLNLARR----L------GAEVA-VNARDTDPAAWLQK--EIG  231 (340)
T ss_dssp             TTSEEEEECCSTTHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----T------TCSEE-EETTTSCHHHHHHH--HHS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHH----c------CCCEE-EeCCCcCHHHHHHH--hCC
Confidence            355788899986 99999999986 5699999999987776543    1      33322 111  121111211  113


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+|.|+.....              ...++...+.|++||++++.
T Consensus       232 ~~d~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  262 (340)
T 3s2e_A          232 GAHGVLVTAVS--------------PKAFSQAIGMVRRGGTIALN  262 (340)
T ss_dssp             SEEEEEESSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCEEEEeCCC--------------HHHHHHHHHHhccCCEEEEe
Confidence            57777654322              25888999999999999875

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=95.16  E-value=0.072  Score=45.89  Aligned_cols=80  Identities=15%  Similarity=0.025  Sum_probs=54.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCe-EEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVL-MIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~-~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~  143 (252)
                      ...+||+-||.|.+...+.+..-... +.++|+++.+++.-+.+           .++..++.+|+.+.....++ ...+
T Consensus        16 ~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N-----------~~~~~~~~~DI~~i~~~~i~~~~~~   84 (295)
T 2qrv_A           16 PIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVR-----------HQGKIMYVGDVRSVTQKHIQEWGPF   84 (295)
T ss_dssp             CEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHH-----------TTTCEEEECCGGGCCHHHHHHTCCC
T ss_pred             CCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHh-----------CCCCceeCCChHHccHHHhcccCCc
Confidence            45899999999999999988743332 58999999876543322           23446778898753222222 1468


Q ss_pred             cEEEEeCCCCccc
Q 025470          144 TKMFFLFPDPHFK  156 (252)
Q Consensus       144 d~i~~~fpdP~~k  156 (252)
                      |.++.-+|..-+.
T Consensus        85 Dll~ggpPCQ~fS   97 (295)
T 2qrv_A           85 DLVIGGSPCNDLS   97 (295)
T ss_dssp             SEEEECCCCGGGB
T ss_pred             CEEEecCCCcccc
Confidence            9999988765443

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=95.12  E-value=0.068  Score=46.59  Aligned_cols=88  Identities=13%  Similarity=0.153  Sum_probs=61.8

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ....||-+|+|. |..++.+|+.. +.+++++|.+++..+.+++    +      +.+.+.   .|.. .+.    . .+
T Consensus       176 ~g~~VlV~GaG~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~v~---~~~~-~~~----~-~~  235 (348)
T 3two_A          176 KGTKVGVAGFGGLGSMAVKYAVAM-GAEVSVFARNEHKKQDALS----M------GVKHFY---TDPK-QCK----E-EL  235 (348)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHHT-TCEEEEECSSSTTHHHHHH----T------TCSEEE---SSGG-GCC----S-CE
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCHHHHHHHHh----c------CCCeec---CCHH-HHh----c-CC
Confidence            356788899987 88889999886 5689999999987766543    2      444332   3432 222    2 67


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+-....+.              .++...+.|++||++++.
T Consensus       236 D~vid~~g~~~--------------~~~~~~~~l~~~G~iv~~  264 (348)
T 3two_A          236 DFIISTIPTHY--------------DLKDYLKLLTYNGDLALV  264 (348)
T ss_dssp             EEEEECCCSCC--------------CHHHHHTTEEEEEEEEEC
T ss_pred             CEEEECCCcHH--------------HHHHHHHHHhcCCEEEEE
Confidence            88876554432              567788899999999886

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=95.00  E-value=0.027  Score=48.32  Aligned_cols=70  Identities=10%  Similarity=0.007  Sum_probs=44.0

Q ss_pred             CcccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccc------------cccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          119 QYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEK------------NHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       119 ~~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~------------h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+.++.++++|+.+.+. .++++++|.|+.+.|=--.+..            +.........+++++.++|||||.+++.
T Consensus        18 ~~~~~~i~~gD~~~~l~-~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~   96 (297)
T 2zig_A           18 SFGVHRLHVGDAREVLA-SFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIV   96 (297)
T ss_dssp             ---CEEEEESCHHHHHT-TSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             cccCCEEEECcHHHHHh-hCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence            45578999999987554 3677899999987652111100            0000000134678999999999999988


Q ss_pred             eCc
Q 025470          187 TDV  189 (252)
Q Consensus       187 td~  189 (252)
                      .++
T Consensus        97 ~~d   99 (297)
T 2zig_A           97 VGD   99 (297)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            763

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=94.99  E-value=0.036  Score=48.25  Aligned_cols=69  Identities=12%  Similarity=-0.023  Sum_probs=46.0

Q ss_pred             ccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccc------cccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          121 QNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRR------RVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       121 ~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~kr------r~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      .+..++++|+.+.+. .++++++|.|++..|=.-....+...      .......+.++.++|+|||.+++..++.
T Consensus        13 ~~~~ii~gD~~~~l~-~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~   87 (323)
T 1boo_A           13 SNGSMYIGDSLELLE-SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA   87 (323)
T ss_dssp             SSEEEEESCHHHHGG-GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred             CCceEEeCcHHHHHh-hCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE
Confidence            467899999986565 46788999999865421110000000      0012467889999999999999987764

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=94.87  E-value=0.094  Score=45.92  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=61.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC------CcccccCccC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT------NSMKYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~------da~~~l~~~~  138 (252)
                      ...||=+|+|. |.+++.+|+......++++|.+++..+.+++. .          +.+.....      |..+.+....
T Consensus       180 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~----------~~~~~~~~~~~~~~~~~~~v~~~t  248 (363)
T 3m6i_A          180 GDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-C----------PEVVTHKVERLSAEESAKKIVESF  248 (363)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-C----------TTCEEEECCSCCHHHHHHHHHHHT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-c----------hhcccccccccchHHHHHHHHHHh
Confidence            45677789987 88899999987443599999999888776542 1          11111111      1111222222


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ....+|.|+-....+              ..++...+.|++||++++.
T Consensus       249 ~g~g~Dvvid~~g~~--------------~~~~~~~~~l~~~G~iv~~  282 (363)
T 3m6i_A          249 GGIEPAVALECTGVE--------------SSIAAAIWAVKFGGKVFVI  282 (363)
T ss_dssp             SSCCCSEEEECSCCH--------------HHHHHHHHHSCTTCEEEEC
T ss_pred             CCCCCCEEEECCCCh--------------HHHHHHHHHhcCCCEEEEE
Confidence            234688887544322              3788899999999999885

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=94.65  E-value=0.088  Score=46.25  Aligned_cols=95  Identities=8%  Similarity=-0.054  Sum_probs=62.2

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC---cccccCccCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN---SMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d---a~~~l~~~~~~  140 (252)
                      ....||=+|+|. |..++.+|+.. +.+++++|.+++.++.+++    +      +.+.+  +..+   ..+.+......
T Consensus       189 ~g~~VlV~G~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~v--i~~~~~~~~~~v~~~~~g  255 (363)
T 3uog_A          189 AGDRVVVQGTGGVALFGLQIAKAT-GAEVIVTSSSREKLDRAFA----L------GADHG--INRLEEDWVERVYALTGD  255 (363)
T ss_dssp             TTCEEEEESSBHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----H------TCSEE--EETTTSCHHHHHHHHHTT
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEecCchhHHHHHH----c------CCCEE--EcCCcccHHHHHHHHhCC
Confidence            356899999887 88888888886 5699999999887766543    2      43322  2222   11112111223


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.|+-.-..               ..+....+.|++||++++..
T Consensus       256 ~g~D~vid~~g~---------------~~~~~~~~~l~~~G~iv~~G  287 (363)
T 3uog_A          256 RGADHILEIAGG---------------AGLGQSLKAVAPDGRISVIG  287 (363)
T ss_dssp             CCEEEEEEETTS---------------SCHHHHHHHEEEEEEEEEEC
T ss_pred             CCceEEEECCCh---------------HHHHHHHHHhhcCCEEEEEe
Confidence            368888765442               25677888999999998863

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=94.63  E-value=0.12  Score=45.64  Aligned_cols=94  Identities=16%  Similarity=0.245  Sum_probs=60.7

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +...||-+|+|. |.+++.+|+.. +..++++|.+++.++.+++    +      +.+.+  +..+-.+.+.. +. ..+
T Consensus       194 ~g~~VlV~GaG~vG~~aiqlak~~-Ga~Vi~~~~~~~~~~~a~~----l------Ga~~v--i~~~~~~~~~~-~~-~g~  258 (369)
T 1uuf_A          194 PGKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----L------GADEV--VNSRNADEMAA-HL-KSF  258 (369)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----H------TCSEE--EETTCHHHHHT-TT-TCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----c------CCcEE--eccccHHHHHH-hh-cCC
Confidence            356888899986 88888999886 5679999999987776653    2      33322  22211111211 11 457


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+-.-..+.              .++...+.|+++|++++..
T Consensus       259 Dvvid~~g~~~--------------~~~~~~~~l~~~G~iv~~G  288 (369)
T 1uuf_A          259 DFILNTVAAPH--------------NLDDFTTLLKRDGTMTLVG  288 (369)
T ss_dssp             EEEEECCSSCC--------------CHHHHHTTEEEEEEEEECC
T ss_pred             CEEEECCCCHH--------------HHHHHHHHhccCCEEEEec
Confidence            88775544332              5667888999999988753

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=94.62  E-value=0.064  Score=47.49  Aligned_cols=95  Identities=14%  Similarity=0.027  Sum_probs=61.4

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC------cccccCccC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN------SMKYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d------a~~~l~~~~  138 (252)
                      ...||-+|+|. |..++.+|+......+++++.+++.++.+++    +      +.+.+  +..+      ..+.+....
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----l------Ga~~v--i~~~~~~~~~~~~~v~~~~  263 (380)
T 1vj0_A          196 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE----I------GADLT--LNRRETSVEERRKAIMDIT  263 (380)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH----T------TCSEE--EETTTSCHHHHHHHHHHHT
T ss_pred             CCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHH----c------CCcEE--EeccccCcchHHHHHHHHh
Confidence            56899999875 8888899988633589999999987766542    1      43322  2221      111122112


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ....+|.|+-.-..+              ..++...+.|++||++++.
T Consensus       264 ~g~g~Dvvid~~g~~--------------~~~~~~~~~l~~~G~iv~~  297 (380)
T 1vj0_A          264 HGRGADFILEATGDS--------------RALLEGSELLRRGGFYSVA  297 (380)
T ss_dssp             TTSCEEEEEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             CCCCCcEEEECCCCH--------------HHHHHHHHHHhcCCEEEEE
Confidence            222588887554332              2778888999999998875

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=94.60  E-value=0.073  Score=46.89  Aligned_cols=94  Identities=13%  Similarity=0.054  Sum_probs=60.7

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~~  139 (252)
                      ...||-+|+|. |..++.+|+......++++|.+++.++.+++    +      +.+.+  +..     +..+.+.... 
T Consensus       193 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----l------Ga~~v--i~~~~~~~~~~~~~~~~~-  259 (374)
T 1cdo_A          193 GSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV----F------GATDF--VNPNDHSEPISQVLSKMT-  259 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----T------TCCEE--ECGGGCSSCHHHHHHHHH-
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH----h------CCceE--EeccccchhHHHHHHHHh-
Confidence            55788899986 8888899998643379999999987766542    1      43322  211     1111111111 


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~  186 (252)
                      .+.+|.|+-.-..              ...++.+.+.|++| |++++.
T Consensus       260 ~~g~D~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~~  293 (374)
T 1cdo_A          260 NGGVDFSLECVGN--------------VGVMRNALESCLKGWGVSVLV  293 (374)
T ss_dssp             TSCBSEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCCEEEECCCC--------------HHHHHHHHHHhhcCCcEEEEE
Confidence            2368888754322              24788899999999 998875

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=94.51  E-value=0.072  Score=46.91  Aligned_cols=96  Identities=14%  Similarity=-0.004  Sum_probs=61.8

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYF  138 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~  138 (252)
                      +...||-+|+|. |.+++.+|+......++++|.+++.++.+++    +      +.+.+  +..     |..+.+... 
T Consensus       191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----l------Ga~~v--i~~~~~~~~~~~~i~~~-  257 (373)
T 1p0f_A          191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE----L------GATEC--LNPKDYDKPIYEVICEK-  257 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----T------TCSEE--ECGGGCSSCHHHHHHHH-
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH----c------CCcEE--EecccccchHHHHHHHH-
Confidence            356888899986 8888899987643379999999987766542    1      43322  211     121112111 


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEEe
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTIT  187 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~t  187 (252)
                      ..+.+|.|+-.-..              ...++...+.|+++ |++++.-
T Consensus       258 t~gg~Dvvid~~g~--------------~~~~~~~~~~l~~~~G~iv~~G  293 (373)
T 1p0f_A          258 TNGGVDYAVECAGR--------------IETMMNALQSTYCGSGVTVVLG  293 (373)
T ss_dssp             TTSCBSEEEECSCC--------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             hCCCCCEEEECCCC--------------HHHHHHHHHHHhcCCCEEEEEc
Confidence            12368888754332              24788899999999 9998753

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=94.47  E-value=0.099  Score=46.02  Aligned_cols=94  Identities=14%  Similarity=0.099  Sum_probs=60.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~~  139 (252)
                      ...||-+|+|. |..++.+|+......++++|.+++.++.+++    +      +.+.+  +..     |..+.+.. +.
T Consensus       192 g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~----l------Ga~~v--i~~~~~~~~~~~~~~~-~~  258 (374)
T 2jhf_A          192 GSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----V------GATEC--VNPQDYKKPIQEVLTE-MS  258 (374)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----T------TCSEE--ECGGGCSSCHHHHHHH-HT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----h------CCceE--ecccccchhHHHHHHH-Hh
Confidence            55788899987 8888899988643379999999987766542    1      33322  211     11111211 11


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~  186 (252)
                      .+.+|.|+-.-..              ...++...+.|+++ |++++.
T Consensus       259 ~~g~D~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~~  292 (374)
T 2jhf_A          259 NGGVDFSFEVIGR--------------LDTMVTALSCCQEAYGVSVIV  292 (374)
T ss_dssp             TSCBSEEEECSCC--------------HHHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCCcEEEECCCC--------------HHHHHHHHHHhhcCCcEEEEe
Confidence            2368888755432              24788899999999 998874

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=94.46  E-value=0.09  Score=46.23  Aligned_cols=95  Identities=14%  Similarity=0.134  Sum_probs=61.3

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYF  138 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~  138 (252)
                      ....||-+|+|. |.+++.+|+......++++|.+++.++.+++    +      +.+.+  +..     |..+.+.. +
T Consensus       190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~----l------Ga~~v--i~~~~~~~~~~~~v~~-~  256 (373)
T 2fzw_A          190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----F------GATEC--INPQDFSKPIQEVLIE-M  256 (373)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----H------TCSEE--ECGGGCSSCHHHHHHH-H
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----c------CCceE--eccccccccHHHHHHH-H
Confidence            355788899886 8888889887633379999999987776643    2      33322  211     11111211 1


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI  186 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~  186 (252)
                      ..+.+|.|+-.-..              ...++...+.|+++ |++++.
T Consensus       257 ~~~g~D~vid~~g~--------------~~~~~~~~~~l~~~~G~iv~~  291 (373)
T 2fzw_A          257 TDGGVDYSFECIGN--------------VKVMRAALEACHKGWGVSVVV  291 (373)
T ss_dssp             TTSCBSEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             hCCCCCEEEECCCc--------------HHHHHHHHHhhccCCcEEEEE
Confidence            12368888755432              24788899999999 999874

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=94.20  E-value=0.098  Score=46.15  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=63.0

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE-EEeCCcccccCcc--CCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS-VVRTNSMKYIPNY--FEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~-~~~~da~~~l~~~--~~~~  141 (252)
                      ...||=+|+|. |.+++.+|+......++++|.++...+.+++    +      +.+.+. .-..|..+.+...  +..+
T Consensus       183 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----l------Ga~~vi~~~~~~~~~~i~~~~~~~~g  252 (370)
T 4ej6_A          183 GSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEE----V------GATATVDPSAGDVVEAIAGPVGLVPG  252 (370)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----H------TCSEEECTTSSCHHHHHHSTTSSSTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----c------CCCEEECCCCcCHHHHHHhhhhccCC
Confidence            55788899987 8888999998744489999999987776643    2      333221 0012222222210  2234


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+|.|+-....              ...++.+.+.|++||++++.-
T Consensus       253 g~Dvvid~~G~--------------~~~~~~~~~~l~~~G~vv~~G  284 (370)
T 4ej6_A          253 GVDVVIECAGV--------------AETVKQSTRLAKAGGTVVILG  284 (370)
T ss_dssp             CEEEEEECSCC--------------HHHHHHHHHHEEEEEEEEECS
T ss_pred             CCCEEEECCCC--------------HHHHHHHHHHhccCCEEEEEe
Confidence            68887754322              248889999999999998853

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=94.19  E-value=0.098  Score=46.09  Aligned_cols=94  Identities=14%  Similarity=0.085  Sum_probs=60.5

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~~  139 (252)
                      ...||-+|+|. |.+++.+|+......++++|.+++.++.+++    +      +.+.+  +..     |+.+.+... .
T Consensus       196 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~----l------Ga~~v--i~~~~~~~~~~~~v~~~-~  262 (376)
T 1e3i_A          196 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA----L------GATDC--LNPRELDKPVQDVITEL-T  262 (376)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----T------TCSEE--ECGGGCSSCHHHHHHHH-H
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----h------CCcEE--EccccccchHHHHHHHH-h
Confidence            55788899986 8888899998743389999999987766542    1      43322  211     111112111 1


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~  186 (252)
                      .+.+|.|+-.-..              ...++...+.|++| |++++.
T Consensus       263 ~~g~Dvvid~~G~--------------~~~~~~~~~~l~~~~G~iv~~  296 (376)
T 1e3i_A          263 AGGVDYSLDCAGT--------------AQTLKAAVDCTVLGWGSCTVV  296 (376)
T ss_dssp             TSCBSEEEESSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCccEEEECCCC--------------HHHHHHHHHHhhcCCCEEEEE
Confidence            2367887754322              24788999999999 998864

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=94.12  E-value=0.15  Score=44.28  Aligned_cols=98  Identities=12%  Similarity=0.057  Sum_probs=59.4

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCc
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s  142 (252)
                      +...||=+|+|. |.++..+|+..-..+++++|.+++.++.+.+    +      +.+. +..-..|..+.+.......-
T Consensus       163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~----~------Ga~~~i~~~~~~~~~~v~~~t~g~g  232 (348)
T 4eez_A          163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKK----I------GADVTINSGDVNPVDEIKKITGGLG  232 (348)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHH----T------TCSEEEEC-CCCHHHHHHHHTTSSC
T ss_pred             CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhh----c------CCeEEEeCCCCCHHHHhhhhcCCCC
Confidence            355788899987 4566677777667899999999987665543    1      3322 22222233222222222233


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +|.++..-.              ....+....+.|+++|++.+.
T Consensus       233 ~d~~~~~~~--------------~~~~~~~~~~~l~~~G~~v~~  262 (348)
T 4eez_A          233 VQSAIVCAV--------------ARIAFEQAVASLKPMGKMVAV  262 (348)
T ss_dssp             EEEEEECCS--------------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             ceEEEEecc--------------CcchhheeheeecCCceEEEE
Confidence            555554322              235788899999999998774

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=94.11  E-value=0.075  Score=46.95  Aligned_cols=94  Identities=16%  Similarity=0.133  Sum_probs=61.4

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-----CcccccCccCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-----NSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-----da~~~l~~~~~  139 (252)
                      ...||=+|+|. |.+++.+|+......++++|.+++.++.|++          .+.+.  ++..     |..+.+.. +.
T Consensus       194 g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~----------lGa~~--vi~~~~~~~~~~~~i~~-~~  260 (378)
T 3uko_A          194 GSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK----------FGVNE--FVNPKDHDKPIQEVIVD-LT  260 (378)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT----------TTCCE--EECGGGCSSCHHHHHHH-HT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----------cCCcE--EEccccCchhHHHHHHH-hc
Confidence            55788899985 8888899988643489999999987776542          14332  2221     11111221 12


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~  186 (252)
                      .+.+|.|+-.-..              +..++...+.|++| |++++.
T Consensus       261 ~gg~D~vid~~g~--------------~~~~~~~~~~l~~g~G~iv~~  294 (378)
T 3uko_A          261 DGGVDYSFECIGN--------------VSVMRAALECCHKGWGTSVIV  294 (378)
T ss_dssp             TSCBSEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCCCCEEEECCCC--------------HHHHHHHHHHhhccCCEEEEE
Confidence            3368888765433              24788999999997 998875

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=93.87  E-value=0.82  Score=39.88  Aligned_cols=128  Identities=13%  Similarity=0.198  Sum_probs=72.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhh----cCC----C-------CcccEEEEeCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRV----SNP----G-------QYQNISVVRTNS  130 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~----~~~----~-------~~~nv~~~~~da  130 (252)
                      ...||.+|||.......+...+++..++-||. ++.++.-++.+.....    ...    .       ..++.+++.+|+
T Consensus        98 ~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~DL  176 (334)
T 1rjd_A           98 KVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACDL  176 (334)
T ss_dssp             SEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECCT
T ss_pred             CcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecCC
Confidence            46899999999999999999888888888887 7776665555443200    000    0       025799999998


Q ss_pred             ccc------cCccCCCCcccEEEEe-CCCCccccccccccccCHHHHHHHHHhhcCCcEEE-EEeC-----chHHHHHHH
Q 025470          131 MKY------IPNYFEKGQLTKMFFL-FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY-TITD-----VEELGDWMR  197 (252)
Q Consensus       131 ~~~------l~~~~~~~s~d~i~~~-fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~-~~td-----~~~~~~~~~  197 (252)
                      .+.      +.... +.+...+++. ..-.+....      ....+++.+...+ |+|.++ +..-     ...+...|.
T Consensus       177 ~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~------~~~~ll~~ia~~~-~~~~~v~~e~i~~~~~~~~fg~~m~  248 (334)
T 1rjd_A          177 NDITETTRLLDVCT-KREIPTIVISECLLCYMHNN------ESQLLINTIMSKF-SHGLWISYDPIGGSQPNDRFGAIMQ  248 (334)
T ss_dssp             TCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHH------HHHHHHHHHHHHC-SSEEEEEEEECCCCSTTCCHHHHHH
T ss_pred             CCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHH------HHHHHHHHHHhhC-CCcEEEEEeccCCCCCcchHHHHHH
Confidence            641      12111 2233334331 111111111      1235777787776 677664 3221     224555566


Q ss_pred             HHHhc
Q 025470          198 SCLEN  202 (252)
Q Consensus       198 ~~~~~  202 (252)
                      ..+..
T Consensus       249 ~~l~~  253 (334)
T 1rjd_A          249 SNLKE  253 (334)
T ss_dssp             HHHHH
T ss_pred             HHhhc
Confidence            66544

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=93.67  E-value=0.1  Score=45.45  Aligned_cols=96  Identities=13%  Similarity=0.101  Sum_probs=61.0

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc-ccccCccCCCCc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS-MKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da-~~~l~~~~~~~s  142 (252)
                      ...||-+|+|. |.+++.+|+.. |+..++++|.+++.++.+++    +      +.+.+  +..+- .+.+...-....
T Consensus       171 g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~----l------Ga~~v--i~~~~~~~~~~~~~~g~g  238 (344)
T 2h6e_A          171 EPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALE----L------GADYV--SEMKDAESLINKLTDGLG  238 (344)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHH----H------TCSEE--ECHHHHHHHHHHHHTTCC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHH----h------CCCEE--eccccchHHHHHhhcCCC
Confidence            55899999976 78888888874 46789999999987776643    2      33322  21110 011111111225


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|+-.-..+              ..++.+.+.|++||++++..
T Consensus       239 ~D~vid~~g~~--------------~~~~~~~~~l~~~G~iv~~g  269 (344)
T 2h6e_A          239 ASIAIDLVGTE--------------ETTYNLGKLLAQEGAIILVG  269 (344)
T ss_dssp             EEEEEESSCCH--------------HHHHHHHHHEEEEEEEEECC
T ss_pred             ccEEEECCCCh--------------HHHHHHHHHhhcCCEEEEeC
Confidence            78877554322              37888899999999988753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=93.66  E-value=0.088  Score=41.77  Aligned_cols=95  Identities=9%  Similarity=0.044  Sum_probs=57.5

Q ss_pred             CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC--CcccccCccCCCC
Q 025470           66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT--NSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~--da~~~l~~~~~~~  141 (252)
                      ...||.+|+  |.|..+..++... +..++++|.+++..+.+.+          .+...+ +-..  +..+.+.......
T Consensus        39 g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----------~g~~~~-~d~~~~~~~~~~~~~~~~~  106 (198)
T 1pqw_A           39 GERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----------LGVEYV-GDSRSVDFADEILELTDGY  106 (198)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----------TCCSEE-EETTCSTHHHHHHHHTTTC
T ss_pred             CCEEEEeeCCChHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----------cCCCEE-eeCCcHHHHHHHHHHhCCC
Confidence            558999994  5577777777764 5689999999876554321          132211 1111  1111121112223


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+|.++-+-. +              ..++.+.+.|++||++++..
T Consensus       107 ~~D~vi~~~g-~--------------~~~~~~~~~l~~~G~~v~~g  137 (198)
T 1pqw_A          107 GVDVVLNSLA-G--------------EAIQRGVQILAPGGRFIELG  137 (198)
T ss_dssp             CEEEEEECCC-T--------------HHHHHHHHTEEEEEEEEECS
T ss_pred             CCeEEEECCc-h--------------HHHHHHHHHhccCCEEEEEc
Confidence            5888775432 1              37788999999999998764

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=93.43  E-value=0.99  Score=33.61  Aligned_cols=105  Identities=11%  Similarity=0.049  Sum_probs=65.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s  142 (252)
                      ...|+=+|||. |..+...... .+..++++|.+++.++.+.+             ..+.++.+|+...  +.. ..-..
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~~~~~~~~-------------~g~~~i~gd~~~~~~l~~-a~i~~   71 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRTRVDELRE-------------RGVRAVLGNAANEEIMQL-AHLEC   71 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHHHHHHHHH-------------TTCEEEESCTTSHHHHHH-TTGGG
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHHHHHHHHH-------------cCCCEEECCCCCHHHHHh-cCccc
Confidence            34688889875 4333333333 36789999999987654432             1356788887531  111 11246


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      .|.+++..|++-..           ..+-...+.+.|+..++....+..+.+.+
T Consensus        72 ad~vi~~~~~~~~n-----------~~~~~~a~~~~~~~~iiar~~~~~~~~~l  114 (140)
T 3fwz_A           72 AKWLILTIPNGYEA-----------GEIVASARAKNPDIEIIARAHYDDEVAYI  114 (140)
T ss_dssp             CSEEEECCSCHHHH-----------HHHHHHHHHHCSSSEEEEEESSHHHHHHH
T ss_pred             CCEEEEECCChHHH-----------HHHHHHHHHHCCCCeEEEEECCHHHHHHH
Confidence            78888887765311           23445677788999998888877766543

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=93.28  E-value=0.15  Score=44.44  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~  140 (252)
                      ...||-+|+|. |..++.+|+.. +. .++++|.+++.++.+++    +      +.+.+  +..   |..+.+......
T Consensus       168 g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~----~------Ga~~~--~~~~~~~~~~~v~~~~~g  234 (348)
T 2d8a_A          168 GKSVLITGAGPLGLLGIAVAKAS-GAYPVIVSEPSDFRRELAKK----V------GADYV--INPFEEDVVKEVMDITDG  234 (348)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHHHHHH----H------TCSEE--ECTTTSCHHHHHHHHTTT
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH----h------CCCEE--ECCCCcCHHHHHHHHcCC
Confidence            45799999975 88888888886 45 89999999887766542    2      33222  221   111112111112


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.|+-.-..              ...++.+.+.|+++|++++..
T Consensus       235 ~g~D~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~g  267 (348)
T 2d8a_A          235 NGVDVFLEFSGA--------------PKALEQGLQAVTPAGRVSLLG  267 (348)
T ss_dssp             SCEEEEEECSCC--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCCC--------------HHHHHHHHHHHhcCCEEEEEc
Confidence            357887755432              247888899999999988753

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=93.25  E-value=0.12  Score=44.93  Aligned_cols=95  Identities=16%  Similarity=0.218  Sum_probs=59.2

Q ss_pred             CceEEEE-cCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADI-GCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDI-GcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=+ |+|. |..++.+|+.. ++++++++.+++.++.+++    +      +.+.+--...|..+.+... ....+
T Consensus       151 g~~VlV~gg~G~vG~~a~qla~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~vi~~~~~~~~~~~~~-~~~g~  218 (346)
T 3fbg_A          151 GKTLLIINGAGGVGSIATQIAKAY-GLRVITTASRNETIEWTKK----M------GADIVLNHKESLLNQFKTQ-GIELV  218 (346)
T ss_dssp             TCEEEEESTTSHHHHHHHHHHHHT-TCEEEEECCSHHHHHHHHH----H------TCSEEECTTSCHHHHHHHH-TCCCE
T ss_pred             CCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----c------CCcEEEECCccHHHHHHHh-CCCCc
Confidence            4578888 5654 88888888876 5699999999887766653    2      3332211111221122221 23457


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+-....              ...++.+.+.|+++|+++..
T Consensus       219 Dvv~d~~g~--------------~~~~~~~~~~l~~~G~iv~~  247 (346)
T 3fbg_A          219 DYVFCTFNT--------------DMYYDDMIQLVKPRGHIATI  247 (346)
T ss_dssp             EEEEESSCH--------------HHHHHHHHHHEEEEEEEEES
T ss_pred             cEEEECCCc--------------hHHHHHHHHHhccCCEEEEE
Confidence            877654322              24678899999999999654

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=93.09  E-value=0.07  Score=46.45  Aligned_cols=65  Identities=12%  Similarity=0.090  Sum_probs=44.1

Q ss_pred             cEEEE-eCCcccccCccCCCCcccEEEEeCCCCccccc------cccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          122 NISVV-RTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEK------NHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       122 nv~~~-~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~------h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      ...++ ++|+.+.+. .++++++|.|++..|   ....      +..---.....+.++.++|+|||.+++..++.
T Consensus        38 ~~~l~i~gD~l~~L~-~l~~~svDlI~tDPP---Y~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~~~~  109 (319)
T 1eg2_A           38 TRHVYDVCDCLDTLA-KLPDDSVQLIICDPP---YNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQ  109 (319)
T ss_dssp             EEEEEEECCHHHHHH-TSCTTCEEEEEECCC---SBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSC
T ss_pred             cceEEECCcHHHHHH-hCccCCcCEEEECCC---CCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEcCcc
Confidence            35677 999987664 467789999998654   2111      00000012357788899999999999998865

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=93.08  E-value=0.26  Score=42.60  Aligned_cols=98  Identities=10%  Similarity=0.047  Sum_probs=59.4

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe--CCcccccCccCCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR--TNSMKYIPNYFEKG  141 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~--~da~~~l~~~~~~~  141 (252)
                      +...||=+|+|. |.+++.+|+......++++|.+++.++.|++    +      +.+.+ +..  .|..+.....-...
T Consensus       160 ~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~----l------Ga~~~-i~~~~~~~~~~~~~~~~~~  228 (346)
T 4a2c_A          160 ENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKS----F------GAMQT-FNSSEMSAPQMQSVLRELR  228 (346)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH----T------TCSEE-EETTTSCHHHHHHHHGGGC
T ss_pred             CCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHH----c------CCeEE-EeCCCCCHHHHHHhhcccC
Confidence            356788889986 6677788888766678999999987766643    1      43321 111  12211111111123


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      -+|.|+-.-.              ....++...+.|++||++.+.-
T Consensus       229 g~d~v~d~~G--------------~~~~~~~~~~~l~~~G~~v~~g  260 (346)
T 4a2c_A          229 FNQLILETAG--------------VPQTVELAVEIAGPHAQLALVG  260 (346)
T ss_dssp             SSEEEEECSC--------------SHHHHHHHHHHCCTTCEEEECC
T ss_pred             Cccccccccc--------------ccchhhhhhheecCCeEEEEEe
Confidence            3555554322              2358889999999999998753

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=93.02  E-value=0.33  Score=41.82  Aligned_cols=120  Identities=12%  Similarity=0.073  Sum_probs=70.5

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .|||+=||.|.+...+-+.. -..+.++|+++.+++.-+.|.           + -.++.+|+.+.-...++  .+|.++
T Consensus         2 kvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N~-----------~-~~~~~~DI~~i~~~~~~--~~D~l~   66 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESNH-----------S-AKLIKGDISKISSDEFP--KCDGII   66 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHHC-----------C-SEEEESCGGGCCGGGSC--CCSEEE
T ss_pred             eEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHHC-----------C-CCcccCChhhCCHhhCC--cccEEE
Confidence            48999999999999888773 235679999998765433321           1 25678998753222233  589998


Q ss_pred             EeCCCCccccccccccccC--HHHHHHHH---HhhcCCcEEEEEeC--------chHHHHHHHHHHhcCC
Q 025470          148 FLFPDPHFKEKNHRRRVIS--PHLLDEYA---YVLGVGGIIYTITD--------VEELGDWMRSCLENHP  204 (252)
Q Consensus       148 ~~fpdP~~k~~h~krr~~~--~~~l~~~~---~~LkpgG~l~~~td--------~~~~~~~~~~~~~~~~  204 (252)
                      .-+|..-+.....++.+-.  ..++.++.   +.++|.-  ++.-+        ....+..+.+.+.+.+
T Consensus        67 ggpPCQ~fS~ag~~~g~~d~R~~L~~~~~r~i~~~~Pk~--~~~ENV~gl~~~~~~~~~~~i~~~l~~~G  134 (331)
T 3ubt_Y           67 GGPPSQSWSEGGSLRGIDDPRGKLFYEYIRILKQKKPIF--FLAENVKGMMAQRHNKAVQEFIQEFDNAG  134 (331)
T ss_dssp             CCCCGGGTEETTEECCTTCGGGHHHHHHHHHHHHHCCSE--EEEEECCGGGGCTTSHHHHHHHHHHHHHT
T ss_pred             ecCCCCCcCCCCCccCCCCchhHHHHHHHHHHhccCCeE--EEeeeecccccccccchhhhhhhhhccCC
Confidence            8887554432221111111  12443333   4456753  23222        2356677777776654

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=92.94  E-value=0.32  Score=43.27  Aligned_cols=96  Identities=15%  Similarity=0.118  Sum_probs=60.0

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~  141 (252)
                      ...||=+|+|. |.+++.+|+......++++|.++..++.+++    +      +.+.  ++..   |..+.+.......
T Consensus       214 g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~----l------Ga~~--vi~~~~~~~~~~i~~~t~g~  281 (404)
T 3ip1_A          214 GDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKE----L------GADH--VIDPTKENFVEAVLDYTNGL  281 (404)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHH----H------TCSE--EECTTTSCHHHHHHHHTTTC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH----c------CCCE--EEcCCCCCHHHHHHHHhCCC
Confidence            55788899976 8888899988744489999999988776653    2      3322  2221   2221222222233


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhh----cCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL----GVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L----kpgG~l~~~  186 (252)
                      .+|.|+-.-..+.             ..+..+.+.|    ++||++++.
T Consensus       282 g~D~vid~~g~~~-------------~~~~~~~~~l~~~~~~~G~iv~~  317 (404)
T 3ip1_A          282 GAKLFLEATGVPQ-------------LVWPQIEEVIWRARGINATVAIV  317 (404)
T ss_dssp             CCSEEEECSSCHH-------------HHHHHHHHHHHHCSCCCCEEEEC
T ss_pred             CCCEEEECCCCcH-------------HHHHHHHHHHHhccCCCcEEEEe
Confidence            5888876543321             2556666666    999999875

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=92.94  E-value=0.16  Score=44.10  Aligned_cols=97  Identities=14%  Similarity=0.145  Sum_probs=60.4

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ....||=+|+  |.|..++.+|+.. +..+++++.+++..+.+++    +      +.+.+.-...+..+.+........
T Consensus       159 ~g~~VlV~Gasg~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~------ga~~v~~~~~~~~~~v~~~~~~~g  227 (342)
T 4eye_A          159 AGETVLVLGAAGGIGTAAIQIAKGM-GAKVIAVVNRTAATEFVKS----V------GADIVLPLEEGWAKAVREATGGAG  227 (342)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----H------TCSEEEESSTTHHHHHHHHTTTSC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----c------CCcEEecCchhHHHHHHHHhCCCC
Confidence            3568999997  5588888999886 5699999999887766543    2      333221111222222222222235


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|+-+-..               ..+....+.|++||++++.-
T Consensus       228 ~Dvvid~~g~---------------~~~~~~~~~l~~~G~iv~~G  257 (342)
T 4eye_A          228 VDMVVDPIGG---------------PAFDDAVRTLASEGRLLVVG  257 (342)
T ss_dssp             EEEEEESCC-----------------CHHHHHHTEEEEEEEEEC-
T ss_pred             ceEEEECCch---------------hHHHHHHHhhcCCCEEEEEE
Confidence            8887755432               24667888999999998753

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=92.70  E-value=0.22  Score=43.18  Aligned_cols=95  Identities=14%  Similarity=0.043  Sum_probs=60.7

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~  139 (252)
                      ....||-+|+  |.|..++.+|+.. +..+++++.+++.++.+.+    +      +...+  +..   +..+.+.....
T Consensus       166 ~g~~vlV~Gasg~iG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~------ga~~~--~d~~~~~~~~~~~~~~~  232 (343)
T 2eih_A          166 PGDDVLVMAAGSGVSVAAIQIAKLF-GARVIATAGSEDKLRRAKA----L------GADET--VNYTHPDWPKEVRRLTG  232 (343)
T ss_dssp             TTCEEEECSTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----H------TCSEE--EETTSTTHHHHHHHHTT
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----c------CCCEE--EcCCcccHHHHHHHHhC
Confidence            3568999998  6788889999886 5689999999887766542    2      33222  221   11111211122


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+|.++-+-. +              ..++.+.+.|+++|++++..
T Consensus       233 ~~~~d~vi~~~g-~--------------~~~~~~~~~l~~~G~~v~~g  265 (343)
T 2eih_A          233 GKGADKVVDHTG-A--------------LYFEGVIKATANGGRIAIAG  265 (343)
T ss_dssp             TTCEEEEEESSC-S--------------SSHHHHHHHEEEEEEEEESS
T ss_pred             CCCceEEEECCC-H--------------HHHHHHHHhhccCCEEEEEe
Confidence            236788775543 2              15677888999999988753

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=92.66  E-value=0.12  Score=44.98  Aligned_cols=95  Identities=11%  Similarity=0.137  Sum_probs=59.4

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-C---CcccccCccC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-T---NSMKYIPNYF  138 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~---da~~~l~~~~  138 (252)
                      +...||-+|+  |.|..++.+|+.. +..++++|.+++..+.+++    +      +...  ++. .   +..+.+....
T Consensus       169 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~V~~~~~~~~~~~~~~~----~------g~~~--~~d~~~~~~~~~~~~~~~  235 (347)
T 2hcy_A          169 AGHWVAISGAAGGLGSLAVQYAKAM-GYRVLGIDGGEGKEELFRS----I------GGEV--FIDFTKEKDIVGAVLKAT  235 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEECSTTHHHHHHH----T------TCCE--EEETTTCSCHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHC-CCcEEEEcCCHHHHHHHHH----c------CCce--EEecCccHhHHHHHHHHh
Confidence            3568999999  5688888888875 5689999999876655432    1      3221  122 1   1111111111


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                       .+.+|.++-+-..              ...++.+.+.|+++|++++..
T Consensus       236 -~~~~D~vi~~~g~--------------~~~~~~~~~~l~~~G~iv~~g  269 (347)
T 2hcy_A          236 -DGGAHGVINVSVS--------------EAAIEASTRYVRANGTTVLVG  269 (347)
T ss_dssp             -TSCEEEEEECSSC--------------HHHHHHHTTSEEEEEEEEECC
T ss_pred             -CCCCCEEEECCCc--------------HHHHHHHHHHHhcCCEEEEEe
Confidence             1257877755432              247888899999999988753

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=92.52  E-value=0.089  Score=44.13  Aligned_cols=79  Identities=11%  Similarity=0.095  Sum_probs=46.7

Q ss_pred             EEEEeCCcccccCccCCCCcccEEEEeCCCCccccccc------cccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          123 ISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNH------RRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       123 v~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~------krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      .+++++|+.+.+. .++++++|.|++..|=........      .-.-.....++++.++|+|||.+++..+.... ..+
T Consensus         5 ~~l~~gD~~~~l~-~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~~d~~~-~~~   82 (260)
T 1g60_A            5 NKIHQMNCFDFLD-QVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNC-AFI   82 (260)
T ss_dssp             SSEEECCHHHHHH-HSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHH-HHH
T ss_pred             CeEEechHHHHHH-hccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEcCcHHH-HHH
Confidence            4578999876664 366789999998654221100000      00001245788889999999999998654332 333


Q ss_pred             HHHHhcC
Q 025470          197 RSCLENH  203 (252)
Q Consensus       197 ~~~~~~~  203 (252)
                      ...+.+.
T Consensus        83 ~~~~~~~   89 (260)
T 1g60_A           83 CQYLVSK   89 (260)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHhh
Confidence            3344433

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=92.50  E-value=0.12  Score=45.18  Aligned_cols=93  Identities=12%  Similarity=0.096  Sum_probs=57.8

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc-cccCccCCCCc
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM-KYIPNYFEKGQ  142 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~-~~l~~~~~~~s  142 (252)
                      ....||-+|+|. |.+++.+|+.. +..++++|.++..++.+++    +      +.+.+  +..+-. +.... +. +.
T Consensus       179 ~g~~VlV~GaG~vG~~~~qlak~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~v--~~~~~~~~~~~~-~~-~~  243 (360)
T 1piw_A          179 PGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----M------GADHY--IATLEEGDWGEK-YF-DT  243 (360)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----H------TCSEE--EEGGGTSCHHHH-SC-SC
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCHHHHHHHHH----c------CCCEE--EcCcCchHHHHH-hh-cC
Confidence            356899999875 88888888875 5579999999887766653    2      33322  221110 11111 11 46


Q ss_pred             ccEEEEeCCC--CccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          143 LTKMFFLFPD--PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       143 ~d~i~~~fpd--P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +|.|+-....  +-              .++.+.+.|++||++++.
T Consensus       244 ~D~vid~~g~~~~~--------------~~~~~~~~l~~~G~iv~~  275 (360)
T 1piw_A          244 FDLIVVCASSLTDI--------------DFNIMPKAMKVGGRIVSI  275 (360)
T ss_dssp             EEEEEECCSCSTTC--------------CTTTGGGGEEEEEEEEEC
T ss_pred             CCEEEECCCCCcHH--------------HHHHHHHHhcCCCEEEEe
Confidence            7888765543  21              344566788999988764

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=92.48  E-value=0.16  Score=44.47  Aligned_cols=93  Identities=16%  Similarity=0.118  Sum_probs=58.7

Q ss_pred             ceEEEEcCcc-cHHH-HHHH-HHCCCCe-EEEEecCHh---HHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC
Q 025470           67 IQFADIGCGF-GGLL-ISLS-TLFPEVL-MIGMELRDK---VTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~-~~lA-~~~p~~~-~iGiDis~~---~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      ..||=+|+|. |.++ +.+| +.. +.. ++++|.+++   ..+.+++    +      +.+.+..-..|..+ +...  
T Consensus       174 ~~VlV~GaG~vG~~a~iqla~k~~-Ga~~Vi~~~~~~~~~~~~~~~~~----l------Ga~~v~~~~~~~~~-i~~~--  239 (357)
T 2b5w_A          174 SSAFVLGNGSLGLLTLAMLKVDDK-GYENLYCLGRRDRPDPTIDIIEE----L------DATYVDSRQTPVED-VPDV--  239 (357)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHCTT-CCCEEEEEECCCSSCHHHHHHHH----T------TCEEEETTTSCGGG-HHHH--
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHc-CCcEEEEEeCCcccHHHHHHHHH----c------CCcccCCCccCHHH-HHHh--
Confidence            6899999865 7778 8888 765 455 999999887   6666542    2      44433000112222 2221  


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+.+|.|+-....              ...++.+.+.|++||++++..
T Consensus       240 ~gg~Dvvid~~g~--------------~~~~~~~~~~l~~~G~iv~~g  273 (357)
T 2b5w_A          240 YEQMDFIYEATGF--------------PKHAIQSVQALAPNGVGALLG  273 (357)
T ss_dssp             SCCEEEEEECSCC--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCCEEEECCCC--------------hHHHHHHHHHHhcCCEEEEEe
Confidence            2367877654322              237888999999999998753

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=92.41  E-value=0.23  Score=42.81  Aligned_cols=95  Identities=11%  Similarity=0.053  Sum_probs=58.4

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC---cccccCccCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN---SMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d---a~~~l~~~~~  139 (252)
                      ....||-+||  |.|..+..+++.. +..++++|.+++.++.+++    +      +.. ..+-..+   ..+.+.... 
T Consensus       145 ~g~~vlV~Ga~ggiG~~~~~~~~~~-G~~V~~~~~~~~~~~~~~~----~------g~~-~~~d~~~~~~~~~~~~~~~-  211 (333)
T 1v3u_A          145 GGETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----I------GFD-AAFNYKTVNSLEEALKKAS-  211 (333)
T ss_dssp             SSCEEEEESTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----T------TCS-EEEETTSCSCHHHHHHHHC-
T ss_pred             CCCEEEEecCCCcHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----c------CCc-EEEecCCHHHHHHHHHHHh-
Confidence            3568999998  5677778888775 5689999999877665521    1      222 1111111   111121111 


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+.+|.++-+-..               ..++...+.|++||++++..
T Consensus       212 ~~~~d~vi~~~g~---------------~~~~~~~~~l~~~G~~v~~g  244 (333)
T 1v3u_A          212 PDGYDCYFDNVGG---------------EFLNTVLSQMKDFGKIAICG  244 (333)
T ss_dssp             TTCEEEEEESSCH---------------HHHHHHHTTEEEEEEEEECC
T ss_pred             CCCCeEEEECCCh---------------HHHHHHHHHHhcCCEEEEEe
Confidence            2467877654321               35778889999999998753

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=92.10  E-value=0.22  Score=43.22  Aligned_cols=93  Identities=15%  Similarity=0.199  Sum_probs=59.4

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~  140 (252)
                      ....||-+|+|. |..++.+|+.. +.+++++|.++..++.+++    +      +.+.+  +..   |..+.+....  
T Consensus       164 ~g~~VlV~GaG~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~~--~d~~~~~~~~~~~~~~--  228 (339)
T 1rjw_A          164 PGEWVAIYGIGGLGHVAVQYAKAM-GLNVVAVDIGDEKLELAKE----L------GADLV--VNPLKEDAAKFMKEKV--  228 (339)
T ss_dssp             TTCEEEEECCSTTHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----T------TCSEE--ECTTTSCHHHHHHHHH--
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----C------CCCEE--ecCCCccHHHHHHHHh--
Confidence            356899999974 88888888886 5699999999987766542    1      33321  211   1111111111  


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +.+|.|+-.-..              ...++...+.|+++|++++.
T Consensus       229 ~~~d~vid~~g~--------------~~~~~~~~~~l~~~G~~v~~  260 (339)
T 1rjw_A          229 GGVHAAVVTAVS--------------KPAFQSAYNSIRRGGACVLV  260 (339)
T ss_dssp             SSEEEEEESSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCC--------------HHHHHHHHHHhhcCCEEEEe
Confidence            357777654332              24788889999999998874

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=91.98  E-value=0.2  Score=43.44  Aligned_cols=95  Identities=12%  Similarity=0.136  Sum_probs=59.1

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~  139 (252)
                      +...||-+|+  |.|..++.+|+.. ++++++++.+++.++.+.+.         .+...+ +-..   +..+.+.... 
T Consensus       155 ~g~~vlI~Ga~g~iG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~~---------~g~~~~-~d~~~~~~~~~~~~~~~-  222 (345)
T 2j3h_A          155 EGETVYVSAASGAVGQLVGQLAKMM-GCYVVGSAGSKEKVDLLKTK---------FGFDDA-FNYKEESDLTAALKRCF-  222 (345)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---------SCCSEE-EETTSCSCSHHHHHHHC-
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH---------cCCceE-EecCCHHHHHHHHHHHh-
Confidence            3568999998  5688888888876 56899999998766554321         133221 1111   1111121111 


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+.+|.++-+-.               ...++...+.|++||++++.
T Consensus       223 ~~~~d~vi~~~g---------------~~~~~~~~~~l~~~G~~v~~  254 (345)
T 2j3h_A          223 PNGIDIYFENVG---------------GKMLDAVLVNMNMHGRIAVC  254 (345)
T ss_dssp             TTCEEEEEESSC---------------HHHHHHHHTTEEEEEEEEEC
T ss_pred             CCCCcEEEECCC---------------HHHHHHHHHHHhcCCEEEEE
Confidence            245787765432               13778888999999999875

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=91.96  E-value=0.14  Score=44.54  Aligned_cols=97  Identities=15%  Similarity=0.254  Sum_probs=59.1

Q ss_pred             CCceEEEEcCc--ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC--cccccCccCCC
Q 025470           65 KKIQFADIGCG--FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN--SMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGcG--~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d--a~~~l~~~~~~  140 (252)
                      +...||-+|+|  .|..++.+|+...+.+++++|.+++.++.+++    +      +.+.+ +...+  ..+.+......
T Consensus       170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~----~------g~~~~-~~~~~~~~~~~~~~~~~~  238 (347)
T 1jvb_A          170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKR----A------GADYV-INASMQDPLAEIRRITES  238 (347)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHH----H------TCSEE-EETTTSCHHHHHHHHTTT
T ss_pred             CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH----h------CCCEE-ecCCCccHHHHHHHHhcC
Confidence            35689999998  56777788877535689999999987766532    2      32211 11111  11011111111


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +.+|.++-+-..              ...++...+.|+++|++++.
T Consensus       239 ~~~d~vi~~~g~--------------~~~~~~~~~~l~~~G~iv~~  270 (347)
T 1jvb_A          239 KGVDAVIDLNNS--------------EKTLSVYPKALAKQGKYVMV  270 (347)
T ss_dssp             SCEEEEEESCCC--------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             CCceEEEECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            467877654332              13677788899999998875

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=91.89  E-value=0.099  Score=45.39  Aligned_cols=96  Identities=18%  Similarity=0.164  Sum_probs=59.1

Q ss_pred             CCceEEEEcCc--ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe--CCcccccCccCCC
Q 025470           65 KKIQFADIGCG--FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR--TNSMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGcG--~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~--~da~~~l~~~~~~  140 (252)
                      ....||-+|+|  .|..++.+|+.. +++++++|.+++.++.+++    +      +.+.+ +..  .|..+.+......
T Consensus       144 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----l------ga~~~-~~~~~~~~~~~~~~~~~~  211 (340)
T 3gms_A          144 RNDVLLVNACGSAIGHLFAQLSQIL-NFRLIAVTRNNKHTEELLR----L------GAAYV-IDTSTAPLYETVMELTNG  211 (340)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----H------TCSEE-EETTTSCHHHHHHHHTTT
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----C------CCcEE-EeCCcccHHHHHHHHhCC
Confidence            35689999987  588888888875 5689999999887766653    2      33221 111  1221112222223


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.++-+-..               ..+....+.|++||++++.-
T Consensus       212 ~g~Dvvid~~g~---------------~~~~~~~~~l~~~G~iv~~G  243 (340)
T 3gms_A          212 IGADAAIDSIGG---------------PDGNELAFSLRPNGHFLTIG  243 (340)
T ss_dssp             SCEEEEEESSCH---------------HHHHHHHHTEEEEEEEEECC
T ss_pred             CCCcEEEECCCC---------------hhHHHHHHHhcCCCEEEEEe
Confidence            467877754322               23344558999999998863

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=90.92  E-value=0.28  Score=42.33  Aligned_cols=96  Identities=9%  Similarity=0.055  Sum_probs=60.1

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC--CcccccCccCCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT--NSMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~--da~~~l~~~~~~  140 (252)
                      +...||-+|+  |.|..++.+|+.. +.++++++.+++.++.+.+.         .+.+.+ +...  |..+.+.... .
T Consensus       149 ~g~~vlI~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~~---------~g~~~~-~~~~~~~~~~~~~~~~-~  216 (336)
T 4b7c_A          149 NGETVVISGAAGAVGSVAGQIARLK-GCRVVGIAGGAEKCRFLVEE---------LGFDGA-IDYKNEDLAAGLKREC-P  216 (336)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHT---------TCCSEE-EETTTSCHHHHHHHHC-T
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHH---------cCCCEE-EECCCHHHHHHHHHhc-C
Confidence            3568999998  5688888888876 56999999998876655221         133221 1111  1111111111 3


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +.+|.++-+-.               ...+....+.|++||++++..
T Consensus       217 ~~~d~vi~~~g---------------~~~~~~~~~~l~~~G~iv~~G  248 (336)
T 4b7c_A          217 KGIDVFFDNVG---------------GEILDTVLTRIAFKARIVLCG  248 (336)
T ss_dssp             TCEEEEEESSC---------------HHHHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCC---------------cchHHHHHHHHhhCCEEEEEe
Confidence            45777765432               147888899999999998754

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=90.81  E-value=0.12  Score=56.68  Aligned_cols=103  Identities=14%  Similarity=0.160  Sum_probs=48.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-----CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-----EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-----~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~  140 (252)
                      .-.|||||.|+|..+..+.....     ...|+-.|+|+...+.|++++..+         ++..-..|...  +..+.+
T Consensus      1241 ~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~---------di~~~~~d~~~--~~~~~~ 1309 (2512)
T 2vz8_A         1241 KMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL---------HVTQGQWDPAN--PAPGSL 1309 (2512)
T ss_dssp             EEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH---------TEEEECCCSSC--CCC---
T ss_pred             CceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc---------ccccccccccc--cccCCC
Confidence            34899999999987766555432     236888899988776666655332         12221122211  012345


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++|.|+....-      |....  ....+..+.++|||||.+++..
T Consensus      1310 ~~ydlvia~~vl------~~t~~--~~~~l~~~~~lL~p~G~l~~~e 1348 (2512)
T 2vz8_A         1310 GKADLLVCNCAL------ATLGD--PAVAVGNMAATLKEGGFLLLHT 1348 (2512)
T ss_dssp             --CCEEEEECC----------------------------CCEEEEEE
T ss_pred             CceeEEEEcccc------ccccc--HHHHHHHHHHhcCCCcEEEEEe
Confidence            678988865321      11000  1247889999999999988864

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=90.39  E-value=0.35  Score=41.28  Aligned_cols=87  Identities=13%  Similarity=0.085  Sum_probs=55.9

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ....||=+|+|. |.+++.+|+.. ++++++++ +++..+.+++    +      +.+.+  +. | .+.+     ...+
T Consensus       142 ~g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~-~~~~~~~~~~----l------Ga~~v--~~-d-~~~v-----~~g~  200 (315)
T 3goh_A          142 KQREVLIVGFGAVNNLLTQMLNNA-GYVVDLVS-ASLSQALAAK----R------GVRHL--YR-E-PSQV-----TQKY  200 (315)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHH-TCEEEEEC-SSCCHHHHHH----H------TEEEE--ES-S-GGGC-----CSCE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHHc-CCEEEEEE-ChhhHHHHHH----c------CCCEE--Ec-C-HHHh-----CCCc
Confidence            356899999975 88889999886 56999999 8877766643    2      44332  22 4 2222     4567


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+-....+               .+....+.|+++|++++..
T Consensus       201 Dvv~d~~g~~---------------~~~~~~~~l~~~G~~v~~g  229 (315)
T 3goh_A          201 FAIFDAVNSQ---------------NAAALVPSLKANGHIICIQ  229 (315)
T ss_dssp             EEEECC----------------------TTGGGEEEEEEEEEEC
T ss_pred             cEEEECCCch---------------hHHHHHHHhcCCCEEEEEe
Confidence            7776433222               2355678899999998864

>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}

Probab=90.37  E-value=0.8  Score=39.61  Aligned_cols=107  Identities=6%  Similarity=0.007  Sum_probs=61.5

Q ss_pred             eEEEEcCcc-cH-HHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           68 QFADIGCGF-GG-LLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        68 ~vLDIGcG~-G~-~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +|-=||||. |. +.+...+..|+..++| +|.+++..+...+   +.      +.++   ...|..+.    +.+..+|
T Consensus        25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~---~~------g~~~---~y~d~~el----l~~~~iD   88 (350)
T 4had_A           25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMAD---RF------SVPH---AFGSYEEM----LASDVID   88 (350)
T ss_dssp             EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHH---HH------TCSE---EESSHHHH----HHCSSCS
T ss_pred             EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH---Hc------CCCe---eeCCHHHH----hcCCCCC
Confidence            677899996 53 3445556678888886 5888875443332   22      4332   34565543    3456899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      .|++.-|+..              -.+.+...|+-|=.+++-   +.+.+-++.|.+...+.+
T Consensus        89 aV~I~tP~~~--------------H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~~  137 (350)
T 4had_A           89 AVYIPLPTSQ--------------HIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDRNK  137 (350)
T ss_dssp             EEEECSCGGG--------------HHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHHHT
T ss_pred             EEEEeCCCch--------------hHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHHcC
Confidence            9999887765              223344455555445442   223334455555555443

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=90.37  E-value=0.59  Score=40.88  Aligned_cols=92  Identities=13%  Similarity=0.115  Sum_probs=57.8

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCH---hHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRD---KVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~---~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      ...||-+|+|. |..++.+|+.. +..++++|.++   +.++.+++    +      +.+.+ - ..|..+.+.. . ..
T Consensus       181 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~~~----~------ga~~v-~-~~~~~~~~~~-~-~~  245 (366)
T 2cdc_A          181 CRKVLVVGTGPIGVLFTLLFRTY-GLEVWMANRREPTEVEQTVIEE----T------KTNYY-N-SSNGYDKLKD-S-VG  245 (366)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHH-TCEEEEEESSCCCHHHHHHHHH----H------TCEEE-E-CTTCSHHHHH-H-HC
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCccchHHHHHHHH----h------CCcee-c-hHHHHHHHHH-h-CC
Confidence            56899999864 66777777765 45899999987   66555432    2      33333 1 1121111211 1 14


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHH-HHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLL-DEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l-~~~~~~LkpgG~l~~~  186 (252)
                      .+|.|+-+-..+.              .+ +.+.+.|+++|++++.
T Consensus       246 ~~d~vid~~g~~~--------------~~~~~~~~~l~~~G~iv~~  277 (366)
T 2cdc_A          246 KFDVIIDATGADV--------------NILGNVIPLLGRNGVLGLF  277 (366)
T ss_dssp             CEEEEEECCCCCT--------------HHHHHHGGGEEEEEEEEEC
T ss_pred             CCCEEEECCCChH--------------HHHHHHHHHHhcCCEEEEE
Confidence            5788876654432              56 8889999999998875

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=90.35  E-value=2.5  Score=36.21  Aligned_cols=106  Identities=10%  Similarity=0.033  Sum_probs=63.1

Q ss_pred             eEEEEcCcc-cHHHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGCGF-GGLLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|.=||||. |...+......|+..+++ +|.+++..+...+   .      .+   +.  ..|..+.+    .+..+|.
T Consensus         5 ~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~---~------~~---~~--~~~~~~~l----~~~~~D~   66 (331)
T 4hkt_A            5 RFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAG---A------YG---CE--VRTIDAIE----AAADIDA   66 (331)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH---H------TT---CE--ECCHHHHH----HCTTCCE
T ss_pred             EEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHH---H------hC---CC--cCCHHHHh----cCCCCCE
Confidence            577799987 544444444567888875 7988875433222   1      13   33  45554433    3457899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~~  205 (252)
                      |++.-|+..              -.+.+...|+.|-.+++.   +.+.+-...+.+...+.+.
T Consensus        67 V~i~tp~~~--------------h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~  115 (331)
T 4hkt_A           67 VVICTPTDT--------------HADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSDTKA  115 (331)
T ss_dssp             EEECSCGGG--------------HHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHHTTC
T ss_pred             EEEeCCchh--------------HHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHHcCC
Confidence            999877655              334445566767666652   3445566667776666554

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=90.32  E-value=2.9  Score=32.31  Aligned_cols=103  Identities=13%  Similarity=0.172  Sum_probs=59.6

Q ss_pred             ceEEEEcCcccHHHHHHHHH--CC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCCC
Q 025470           67 IQFADIGCGFGGLLISLSTL--FP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEKG  141 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~--~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~~  141 (252)
                      ..|+=+|||.  ++..+|+.  .. +..|+++|.+++.++.+..          .   .+.++.+|+.+  .+.....-.
T Consensus        40 ~~v~IiG~G~--~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~----------~---g~~~~~gd~~~~~~l~~~~~~~  104 (183)
T 3c85_A           40 AQVLILGMGR--IGTGAYDELRARYGKISLGIEIREEAAQQHRS----------E---GRNVISGDATDPDFWERILDTG  104 (183)
T ss_dssp             CSEEEECCSH--HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHH----------T---TCCEEECCTTCHHHHHTBCSCC
T ss_pred             CcEEEECCCH--HHHHHHHHHHhccCCeEEEEECCHHHHHHHHH----------C---CCCEEEcCCCCHHHHHhccCCC
Confidence            3577788864  44433332  12 5689999999976544321          1   24466666532  122110123


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDW  195 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~  195 (252)
                      ..|.|++..|++..          + ..+-...+.+.|++.++..+......+.
T Consensus       105 ~ad~vi~~~~~~~~----------~-~~~~~~~~~~~~~~~ii~~~~~~~~~~~  147 (183)
T 3c85_A          105 HVKLVLLAMPHHQG----------N-QTALEQLQRRNYKGQIAAIAEYPDQLEG  147 (183)
T ss_dssp             CCCEEEECCSSHHH----------H-HHHHHHHHHTTCCSEEEEEESSHHHHHH
T ss_pred             CCCEEEEeCCChHH----------H-HHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            57888887776431          1 2333456667788899888887666553

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=90.08  E-value=0.27  Score=42.49  Aligned_cols=110  Identities=15%  Similarity=0.142  Sum_probs=65.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC-----ccCCC
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP-----NYFEK  140 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~-----~~~~~  140 (252)
                      ..||+||||-=.....+.  .| +..|+-|| .+..++..++.+...   ......+..++.+|+.+.+.     ..|..
T Consensus       104 ~QvV~LGaGlDTra~Rl~--~~~~~~v~evD-~P~vi~~k~~lL~~~---~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~  177 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLD--WPTGTTVYEID-QPKVLAYKSTTLAEH---GVTPTADRREVPIDLRQDWPPALRSAGFDP  177 (310)
T ss_dssp             CEEEEETCTTCCHHHHSC--CCTTCEEEEEE-CHHHHHHHHHHHHHT---TCCCSSEEEEEECCTTSCHHHHHHHTTCCT
T ss_pred             CeEEEeCCCCCchhhhcc--CCCCcEEEEcC-CHHHHHHHHHHHHhc---CCCCCCCeEEEecchHhhHHHHHHhccCCC
Confidence            379999999877655544  24 47899999 588887776666432   11234678999999864211     11211


Q ss_pred             CcccEEEEeCC-CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          141 GQLTKMFFLFP-DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       141 ~s~d~i~~~fp-dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                       +...+++.-. -.+....      ....+++.+...+.||+.|.+..-.
T Consensus       178 -~~Pt~~i~Egvl~Yl~~~------~~~~ll~~l~~~~~~gs~l~~d~~~  220 (310)
T 2uyo_A          178 -SARTAWLAEGLLMYLPAT------AQDGLFTEIGGLSAVGSRIAVETSP  220 (310)
T ss_dssp             -TSCEEEEECSCGGGSCHH------HHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred             -CCCEEEEEechHhhCCHH------HHHHHHHHHHHhCCCCeEEEEEecC
Confidence             2233332110 0010000      1135899999989999999987543

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=89.75  E-value=1.6  Score=39.20  Aligned_cols=103  Identities=12%  Similarity=0.009  Sum_probs=67.2

Q ss_pred             ceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s  142 (252)
                      ..|+=+|||.  ++..+|+.  ..+..|++||.+++.++.+..          .   .+.++.+|+...  |.. ..-..
T Consensus         5 ~~viIiG~Gr--~G~~va~~L~~~g~~vvvId~d~~~v~~~~~----------~---g~~vi~GDat~~~~L~~-agi~~   68 (413)
T 3l9w_A            5 MRVIIAGFGR--FGQITGRLLLSSGVKMVVLDHDPDHIETLRK----------F---GMKVFYGDATRMDLLES-AGAAK   68 (413)
T ss_dssp             CSEEEECCSH--HHHHHHHHHHHTTCCEEEEECCHHHHHHHHH----------T---TCCCEESCTTCHHHHHH-TTTTT
T ss_pred             CeEEEECCCH--HHHHHHHHHHHCCCCEEEEECCHHHHHHHHh----------C---CCeEEEcCCCCHHHHHh-cCCCc
Confidence            4678888865  44444433  136789999999988765432          1   356788998641  211 12346


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      .|.|++..+++..           ...+...++.+.|+..++..+.+......+
T Consensus        69 A~~viv~~~~~~~-----------n~~i~~~ar~~~p~~~Iiara~~~~~~~~L  111 (413)
T 3l9w_A           69 AEVLINAIDDPQT-----------NLQLTEMVKEHFPHLQIIARARDVDHYIRL  111 (413)
T ss_dssp             CSEEEECCSSHHH-----------HHHHHHHHHHHCTTCEEEEEESSHHHHHHH
T ss_pred             cCEEEECCCChHH-----------HHHHHHHHHHhCCCCeEEEEECCHHHHHHH
Confidence            7888888877542           246667778888998888888776655443

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=89.52  E-value=1.2  Score=35.75  Aligned_cols=102  Identities=7%  Similarity=0.007  Sum_probs=62.2

Q ss_pred             EEEEcCcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCccc
Q 025470           69 FADIGCGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQLT  144 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s~d  144 (252)
                      |+=+|+  |.++..+|+..  .+..++++|.+++.++...+   .         .++.++.+|+...  +.. ..-...|
T Consensus         3 iiIiG~--G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~---~---------~~~~~i~gd~~~~~~l~~-a~i~~ad   67 (218)
T 3l4b_C            3 VIIIGG--ETTAYYLARSMLSRKYGVVIINKDRELCEEFAK---K---------LKATIIHGDGSHKEILRD-AEVSKND   67 (218)
T ss_dssp             EEEECC--HHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH---H---------SSSEEEESCTTSHHHHHH-HTCCTTC
T ss_pred             EEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---H---------cCCeEEEcCCCCHHHHHh-cCcccCC
Confidence            555665  66666666642  36789999999986653221   1         1366888887531  111 1124678


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      .|++..+++-.           ..++..+++.+.+...++..+.+..+.+.+
T Consensus        68 ~vi~~~~~d~~-----------n~~~~~~a~~~~~~~~iia~~~~~~~~~~l  108 (218)
T 3l4b_C           68 VVVILTPRDEV-----------NLFIAQLVMKDFGVKRVVSLVNDPGNMEIF  108 (218)
T ss_dssp             EEEECCSCHHH-----------HHHHHHHHHHTSCCCEEEECCCSGGGHHHH
T ss_pred             EEEEecCCcHH-----------HHHHHHHHHHHcCCCeEEEEEeCcchHHHH
Confidence            88887776532           135666666677777777777666655433

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=89.36  E-value=1.2  Score=40.92  Aligned_cols=82  Identities=12%  Similarity=0.087  Sum_probs=53.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-------  138 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-------  138 (252)
                      .-.+||+-||.|.+...+.+.. ...+.++|+++.+++.-+.+.        ...++..++.+|+.+......       
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG-~~~v~avE~d~~A~~ty~~N~--------~~~p~~~~~~~DI~~i~~~~~~~~~~~~  158 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIG-GQCVFTSEWNKHAVRTYKANH--------YCDPATHHFNEDIRDITLSHQEGVSDEA  158 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTT-EEEEEEECCCHHHHHHHHHHS--------CCCTTTCEEESCTHHHHCTTCTTSCHHH
T ss_pred             cceEEEecCCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHhc--------ccCCCcceeccchhhhhhccccccchhh
Confidence            4589999999999999988773 234799999997765433322        112345567788865321100       


Q ss_pred             -------CCCcccEEEEeCCCCccc
Q 025470          139 -------EKGQLTKMFFLFPDPHFK  156 (252)
Q Consensus       139 -------~~~s~d~i~~~fpdP~~k  156 (252)
                             ....+|.|+.-+|..-+.
T Consensus       159 ~~~~i~~~~~~~Dvl~gGpPCQ~FS  183 (482)
T 3me5_A          159 AAEHIRQHIPEHDVLLAGFPCQPFS  183 (482)
T ss_dssp             HHHHHHHHSCCCSEEEEECCCCCC-
T ss_pred             HHhhhhhcCCCCCEEEecCCCcchh
Confidence                   013579999888866443

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=89.36  E-value=4.4  Score=35.04  Aligned_cols=108  Identities=12%  Similarity=0.100  Sum_probs=63.8

Q ss_pred             ceEEEEcCcc-cH-HHHHHHHHCCCCeEEEE-ecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGF-GG-LLISLSTLFPEVLMIGM-ELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~-G~-~~~~lA~~~p~~~~iGi-Dis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      -.|.=||||. |. ..+......|+..+++| |.+++..+...+   ..      +.   ... .|..+.    +.+..+
T Consensus        28 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~------g~---~~~-~~~~~l----l~~~~~   90 (350)
T 3rc1_A           28 IRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTE---RF------GG---EPV-EGYPAL----LERDDV   90 (350)
T ss_dssp             EEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHH---HH------CS---EEE-ESHHHH----HTCTTC
T ss_pred             eEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHH---Hc------CC---CCc-CCHHHH----hcCCCC
Confidence            3688899985 44 23333445678887755 888765433222   22      33   232 555443    335678


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~~  205 (252)
                      |.|++.-|+..              -.+.+...|+.|-.+++.   +.+.+-+..+.+...+.+.
T Consensus        91 D~V~i~tp~~~--------------h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~  141 (350)
T 3rc1_A           91 DAVYVPLPAVL--------------HAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARERGL  141 (350)
T ss_dssp             SEEEECCCGGG--------------HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCcHH--------------HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            99999877654              334455667777666653   3345566667777766654

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=89.25  E-value=1.1  Score=39.29  Aligned_cols=93  Identities=12%  Similarity=0.079  Sum_probs=56.5

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||=+|+|. |..++.+|+.. +..+++++.+++.++.+.+.         .+.+.  ++..+-.+.+....  +.+|
T Consensus       188 g~~VlV~GaG~vG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~~---------lGa~~--v~~~~~~~~~~~~~--~~~D  253 (366)
T 1yqd_A          188 GKHIGIVGLGGLGHVAVKFAKAF-GSKVTVISTSPSKKEEALKN---------FGADS--FLVSRDQEQMQAAA--GTLD  253 (366)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCGGGHHHHHHT---------SCCSE--EEETTCHHHHHHTT--TCEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHh---------cCCce--EEeccCHHHHHHhh--CCCC
Confidence            45778899876 77788888876 56899999998766554321         13332  22211111122111  3578


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+-.-..+.              .++...+.|+++|++++.
T Consensus       254 ~vid~~g~~~--------------~~~~~~~~l~~~G~iv~~  281 (366)
T 1yqd_A          254 GIIDTVSAVH--------------PLLPLFGLLKSHGKLILV  281 (366)
T ss_dssp             EEEECCSSCC--------------CSHHHHHHEEEEEEEEEC
T ss_pred             EEEECCCcHH--------------HHHHHHHHHhcCCEEEEE
Confidence            8876554332              345667788999988775

>2km1_A Protein DRE2; yeast, antiapoptotic, protein binding; NMR {Saccharomyces cerevisiae}

Probab=88.98  E-value=0.42  Score=36.18  Aligned_cols=42  Identities=17%  Similarity=0.293  Sum_probs=33.5

Q ss_pred             CCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          138 FEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       138 ~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      ++++++|.|++.-|..-      ..+.+.+.++..+...|||||.|.-
T Consensus        55 Lp~stYD~V~~lt~~~~------~~~~l~r~li~~l~~aLkpgG~L~g   96 (136)
T 2km1_A           55 LENAKYETVHYLTPEAQ------TDIKFPKKLISVLADSLKPNGSLIG   96 (136)
T ss_dssp             CCSSSCCSEEEECCCSS------CSCCCCHHHHHHHHTTCCTTCCEEC
T ss_pred             CCcccccEEEEecCCcc------chhhcCHHHHHHHHHHhCCCCEEEe
Confidence            67899999998765442      1234567899999999999999996

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=88.93  E-value=0.53  Score=40.37  Aligned_cols=96  Identities=8%  Similarity=0.039  Sum_probs=58.5

Q ss_pred             CCceEEEEc--CcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC--cccccCccCCC
Q 025470           65 KKIQFADIG--CGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN--SMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIG--cG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d--a~~~l~~~~~~  140 (252)
                      ....||-+|  .|.|..+..+|+.. +..++++|.+++.++.+.+    +      +...+ +-..+  ..+.+......
T Consensus       140 ~g~~vlV~Ga~ggiG~~~~~~a~~~-G~~V~~~~~~~~~~~~~~~----~------g~~~~-~~~~~~~~~~~~~~~~~~  207 (327)
T 1qor_A          140 PDEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----A------GAWQV-INYREEDLVERLKEITGG  207 (327)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----H------TCSEE-EETTTSCHHHHHHHHTTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----c------CCCEE-EECCCccHHHHHHHHhCC
Confidence            356899999  45677888888775 5689999999877665543    2      22211 11111  11111111222


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.++-+-. +              ..++.+.+.|++||++++..
T Consensus       208 ~~~D~vi~~~g-~--------------~~~~~~~~~l~~~G~iv~~g  239 (327)
T 1qor_A          208 KKVRVVYDSVG-R--------------DTWERSLDCLQRRGLMVSFG  239 (327)
T ss_dssp             CCEEEEEECSC-G--------------GGHHHHHHTEEEEEEEEECC
T ss_pred             CCceEEEECCc-h--------------HHHHHHHHHhcCCCEEEEEe
Confidence            35787765543 1              26778889999999988753

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=88.92  E-value=0.94  Score=39.21  Aligned_cols=94  Identities=15%  Similarity=0.141  Sum_probs=58.2

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ....||=+|+  |.|..++.+|+.. +++++++ .+++.++.+++    +      +.+.+. ...|..+.+........
T Consensus       150 ~g~~VlV~Ga~g~iG~~~~q~a~~~-Ga~Vi~~-~~~~~~~~~~~----l------Ga~~i~-~~~~~~~~~~~~~~~~g  216 (343)
T 3gaz_A          150 DGQTVLIQGGGGGVGHVAIQIALAR-GARVFAT-ARGSDLEYVRD----L------GATPID-ASREPEDYAAEHTAGQG  216 (343)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEE-ECHHHHHHHHH----H------TSEEEE-TTSCHHHHHHHHHTTSC
T ss_pred             CCCEEEEecCCCHHHHHHHHHHHHC-CCEEEEE-eCHHHHHHHHH----c------CCCEec-cCCCHHHHHHHHhcCCC
Confidence            3568999994  4588888888876 5689999 88877665542    2      433221 11122111211112245


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +|.|+-+-..               ..+....+.|+++|++++.
T Consensus       217 ~D~vid~~g~---------------~~~~~~~~~l~~~G~iv~~  245 (343)
T 3gaz_A          217 FDLVYDTLGG---------------PVLDASFSAVKRFGHVVSC  245 (343)
T ss_dssp             EEEEEESSCT---------------HHHHHHHHHEEEEEEEEES
T ss_pred             ceEEEECCCc---------------HHHHHHHHHHhcCCeEEEE
Confidence            7877654321               3788888999999999874

>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*

Probab=88.80  E-value=4.5  Score=36.29  Aligned_cols=78  Identities=12%  Similarity=0.119  Sum_probs=44.9

Q ss_pred             ceEEEEcCcc-cHHHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCC
Q 025470           67 IQFADIGCGF-GGLLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKG  141 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~  141 (252)
                      -.|.=||||. |..-+......|+..+++ +|.+++..+.+.+.+...      +.+.+.+...   |..+    .+.+.
T Consensus        21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~------g~~~~~~~~~~~~~~~~----ll~~~   90 (444)
T 2ixa_A           21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKN------GKKPAKVFGNGNDDYKN----MLKDK   90 (444)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHT------TCCCCEEECSSTTTHHH----HTTCT
T ss_pred             ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhc------CCCCCceeccCCCCHHH----HhcCC
Confidence            3688899984 332222333457777654 588887665554433221      4433444432   5443    34455


Q ss_pred             cccEEEEeCCCCc
Q 025470          142 QLTKMFFLFPDPH  154 (252)
Q Consensus       142 s~d~i~~~fpdP~  154 (252)
                      .+|.|++.-|+.+
T Consensus        91 ~vD~V~i~tp~~~  103 (444)
T 2ixa_A           91 NIDAVFVSSPWEW  103 (444)
T ss_dssp             TCCEEEECCCGGG
T ss_pred             CCCEEEEcCCcHH
Confidence            7999999877654

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=88.42  E-value=0.52  Score=41.06  Aligned_cols=95  Identities=13%  Similarity=0.169  Sum_probs=58.0

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC---cccccCccCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN---SMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d---a~~~l~~~~~  139 (252)
                      ....||-+|+  |.|..++.+|+.. ++.+++++.+++.++.+++    +      +...  ++..+   ..+.+.....
T Consensus       170 ~g~~vlV~GasggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~------ga~~--~~d~~~~~~~~~~~~~~~  236 (351)
T 1yb5_A          170 AGESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQ----N------GAHE--VFNHREVNYIDKIKKYVG  236 (351)
T ss_dssp             TTCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----T------TCSE--EEETTSTTHHHHHHHHHC
T ss_pred             CcCEEEEECCCChHHHHHHHHHHHC-CCEEEEEeCChhHHHHHHH----c------CCCE--EEeCCCchHHHHHHHHcC
Confidence            3568999997  5578888888875 5689999999887664432    1      3221  12211   1111111112


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+|.++-+-.               ...+....+.|+++|++++..
T Consensus       237 ~~~~D~vi~~~G---------------~~~~~~~~~~l~~~G~iv~~g  269 (351)
T 1yb5_A          237 EKGIDIIIEMLA---------------NVNLSKDLSLLSHGGRVIVVG  269 (351)
T ss_dssp             TTCEEEEEESCH---------------HHHHHHHHHHEEEEEEEEECC
T ss_pred             CCCcEEEEECCC---------------hHHHHHHHHhccCCCEEEEEe
Confidence            235777765432               135677889999999988753

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=88.40  E-value=0.46  Score=40.83  Aligned_cols=96  Identities=9%  Similarity=0.025  Sum_probs=59.7

Q ss_pred             CCceEEEEc-C-cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC--CcccccCccCCC
Q 025470           65 KKIQFADIG-C-GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT--NSMKYIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIG-c-G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~--da~~~l~~~~~~  140 (252)
                      +...||=+| + |.|..++.+|+.. +.++++++.+++.++.+++    +      +.+.+ +...  |..+.+......
T Consensus       140 ~g~~VlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~------Ga~~~-~~~~~~~~~~~~~~~~~~  207 (325)
T 3jyn_A          140 PGEIILFHAAAGGVGSLACQWAKAL-GAKLIGTVSSPEKAAHAKA----L------GAWET-IDYSHEDVAKRVLELTDG  207 (325)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----H------TCSEE-EETTTSCHHHHHHHHTTT
T ss_pred             CCCEEEEEcCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----c------CCCEE-EeCCCccHHHHHHHHhCC
Confidence            356899898 3 4588888888875 5689999999987776643    2      32211 1111  111112222223


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.|+-+-..               ..+....+.|++||++++.-
T Consensus       208 ~g~Dvvid~~g~---------------~~~~~~~~~l~~~G~iv~~g  239 (325)
T 3jyn_A          208 KKCPVVYDGVGQ---------------DTWLTSLDSVAPRGLVVSFG  239 (325)
T ss_dssp             CCEEEEEESSCG---------------GGHHHHHTTEEEEEEEEECC
T ss_pred             CCceEEEECCCh---------------HHHHHHHHHhcCCCEEEEEe
Confidence            467877654322               26678889999999998863

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=88.32  E-value=0.51  Score=40.65  Aligned_cols=94  Identities=13%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~  139 (252)
                      +...||-+|+  |.|..++.+|+.. +.++++++.+++.++.+++    +      +.+.  ++..   |..+.+.....
T Consensus       148 ~g~~vlV~Ga~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~------ga~~--~~~~~~~~~~~~~~~~~~  214 (334)
T 3qwb_A          148 KGDYVLLFAAAGGVGLILNQLLKMK-GAHTIAVASTDEKLKIAKE----Y------GAEY--LINASKEDILRQVLKFTN  214 (334)
T ss_dssp             TTCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----T------TCSE--EEETTTSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----c------CCcE--EEeCCCchHHHHHHHHhC
Confidence            3568999994  4588888888876 5689999999887765542    1      3221  2221   11111211122


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ...+|.++-+-..               ..++.+.+.|++||++++.
T Consensus       215 ~~g~D~vid~~g~---------------~~~~~~~~~l~~~G~iv~~  246 (334)
T 3qwb_A          215 GKGVDASFDSVGK---------------DTFEISLAALKRKGVFVSF  246 (334)
T ss_dssp             TSCEEEEEECCGG---------------GGHHHHHHHEEEEEEEEEC
T ss_pred             CCCceEEEECCCh---------------HHHHHHHHHhccCCEEEEE
Confidence            3457877654322               2677888999999999875

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=88.21  E-value=0.55  Score=39.79  Aligned_cols=89  Identities=11%  Similarity=0.098  Sum_probs=56.9

Q ss_pred             CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc-ccccCccCCCCc
Q 025470           66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS-MKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da-~~~l~~~~~~~s  142 (252)
                      ...||-+|+  |.|..++.+|+.. +..+++++.+++.++.+++    +      +.+.+  +..+- .+... .+  ..
T Consensus       126 g~~vlV~Ga~G~vG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~------ga~~~--~~~~~~~~~~~-~~--~~  189 (302)
T 1iz0_A          126 GEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----L------GAEEA--ATYAEVPERAK-AW--GG  189 (302)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----T------TCSEE--EEGGGHHHHHH-HT--TS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHh----c------CCCEE--EECCcchhHHH-Hh--cC
Confidence            568999998  4588888888886 5689999998877665532    1      33322  22111 11111 11  45


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +|.|+- ...               ..++...+.|+++|++++.
T Consensus       190 ~d~vid-~g~---------------~~~~~~~~~l~~~G~~v~~  217 (302)
T 1iz0_A          190 LDLVLE-VRG---------------KEVEESLGLLAHGGRLVYI  217 (302)
T ss_dssp             EEEEEE-CSC---------------TTHHHHHTTEEEEEEEEEC
T ss_pred             ceEEEE-CCH---------------HHHHHHHHhhccCCEEEEE
Confidence            777765 432               1567788899999998764

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=88.19  E-value=0.54  Score=40.70  Aligned_cols=92  Identities=9%  Similarity=0.055  Sum_probs=56.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~  140 (252)
                      ...||-+|+|. |..++.+|+.. +. .++++|.+++.++.+++            + --.++..   |..+.+.... .
T Consensus       165 g~~VlV~GaG~vG~~~~q~a~~~-Ga~~Vi~~~~~~~~~~~~~~------------l-a~~v~~~~~~~~~~~~~~~~-~  229 (343)
T 2dq4_A          165 GKSVLITGAGPIGLMAAMVVRAS-GAGPILVSDPNPYRLAFARP------------Y-ADRLVNPLEEDLLEVVRRVT-G  229 (343)
T ss_dssp             TSCEEEECCSHHHHHHHHHHHHT-TCCSEEEECSCHHHHGGGTT------------T-CSEEECTTTSCHHHHHHHHH-S
T ss_pred             CCEEEEECCCHHHHHHHHHHHHc-CCCEEEEECCCHHHHHHHHH------------h-HHhccCcCccCHHHHHHHhc-C
Confidence            45799999875 78888888886 45 89999999875544321            1 1112221   1111111111 2


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ..+|.|+-.-..              ...++...+.|+++|++++.
T Consensus       230 ~g~D~vid~~g~--------------~~~~~~~~~~l~~~G~iv~~  261 (343)
T 2dq4_A          230 SGVEVLLEFSGN--------------EAAIHQGLMALIPGGEARIL  261 (343)
T ss_dssp             SCEEEEEECSCC--------------HHHHHHHHHHEEEEEEEEEC
T ss_pred             CCCCEEEECCCC--------------HHHHHHHHHHHhcCCEEEEE
Confidence            357777654332              24788899999999998875

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=88.19  E-value=0.59  Score=36.36  Aligned_cols=102  Identities=10%  Similarity=0.056  Sum_probs=62.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC--CCccc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE--KGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~--~~s~d  144 (252)
                      .-|||+|-|+|..--.|.+.+|+..++.+|.--..      .-..       -.+.=.++.+|+.+.++...+  .....
T Consensus        42 GpVlElGLGNGRTydHLRe~~P~R~I~vfDR~~~~------hp~~-------~P~~e~~ilGdi~~tL~~~~~r~g~~a~  108 (174)
T 3iht_A           42 GPVYELGLGNGRTYHHLRQHVQGREIYVFERAVAS------HPDS-------TPPEAQLILGDIRETLPATLERFGATAS  108 (174)
T ss_dssp             SCEEEECCTTCHHHHHHHHHCCSSCEEEEESSCCC------CGGG-------CCCGGGEEESCHHHHHHHHHHHHCSCEE
T ss_pred             CceEEecCCCChhHHHHHHhCCCCcEEEEEeeecc------CCCC-------CCchHheecccHHHHHHHHHHhcCCceE
Confidence            46999999999999999999999999999963211      0000       122346788888876653211  34455


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .++..+-.-...+.-.    ...-+-..+..+|.|||.++-
T Consensus       109 LaHaD~G~g~~~~d~a----~a~~lsplI~~~la~GGi~vS  145 (174)
T 3iht_A          109 LVHADLGGHNREKNDR----FARLISPLIEPHLAQGGLMVS  145 (174)
T ss_dssp             EEEECCCCSCHHHHHH----HHHHHHHHHGGGEEEEEEEEE
T ss_pred             EEEeecCCCCcchhHH----HHHhhhHHHHHHhcCCcEEEe
Confidence            5555443222111101    111244567789999998753

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=88.07  E-value=0.7  Score=40.21  Aligned_cols=95  Identities=8%  Similarity=0.000  Sum_probs=58.4

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~  139 (252)
                      ....||-+|+  |.|..++.+|+.. ++.++++|.+++.++.+++    +      +.+.  ++..   +..+.+.....
T Consensus       162 ~g~~vlV~Ga~ggiG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----~------g~~~--~~~~~~~~~~~~~~~~~~  228 (354)
T 2j8z_A          162 AGDYVLIHAGLSGVGTAAIQLTRMA-GAIPLVTAGSQKKLQMAEK----L------GAAA--GFNYKKEDFSEATLKFTK  228 (354)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----H------TCSE--EEETTTSCHHHHHHHHTT
T ss_pred             CCCEEEEECCccHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHH----c------CCcE--EEecCChHHHHHHHHHhc
Confidence            3568999984  5688888888875 5689999999887766532    2      2221  1221   11111211122


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+|.++-+-..               ..+....+.|++||++++..
T Consensus       229 ~~~~d~vi~~~G~---------------~~~~~~~~~l~~~G~iv~~G  261 (354)
T 2j8z_A          229 GAGVNLILDCIGG---------------SYWEKNVNCLALDGRWVLYG  261 (354)
T ss_dssp             TSCEEEEEESSCG---------------GGHHHHHHHEEEEEEEEECC
T ss_pred             CCCceEEEECCCc---------------hHHHHHHHhccCCCEEEEEe
Confidence            2357877655432               14667788999999998753

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=87.98  E-value=0.88  Score=39.08  Aligned_cols=94  Identities=10%  Similarity=0.107  Sum_probs=58.6

Q ss_pred             CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCC
Q 025470           66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~  140 (252)
                      ...||-+|+  |.|..+..+++.. +..++++|.+++.++.+.+    +      +.+.  ++..   +..+.+......
T Consensus       146 g~~vlV~Ga~ggiG~~~~~~a~~~-G~~Vi~~~~~~~~~~~~~~----~------g~~~--~~d~~~~~~~~~i~~~~~~  212 (333)
T 1wly_A          146 GDYVLIHAAAGGMGHIMVPWARHL-GATVIGTVSTEEKAETARK----L------GCHH--TINYSTQDFAEVVREITGG  212 (333)
T ss_dssp             TCEEEETTTTSTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----H------TCSE--EEETTTSCHHHHHHHHHTT
T ss_pred             CCEEEEECCccHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----c------CCCE--EEECCCHHHHHHHHHHhCC
Confidence            568999995  6688888888876 5689999999877665542    2      2221  1221   111111111112


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.++-+-..               ..++.+.+.|++||++++..
T Consensus       213 ~~~d~vi~~~g~---------------~~~~~~~~~l~~~G~iv~~g  244 (333)
T 1wly_A          213 KGVDVVYDSIGK---------------DTLQKSLDCLRPRGMCAAYG  244 (333)
T ss_dssp             CCEEEEEECSCT---------------TTHHHHHHTEEEEEEEEECC
T ss_pred             CCCeEEEECCcH---------------HHHHHHHHhhccCCEEEEEe
Confidence            357777654332               25778889999999988753

>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}

Probab=87.90  E-value=3.9  Score=35.14  Aligned_cols=107  Identities=11%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             eEEEEcCcc-cHHHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGCGF-GGLLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|.=||||. |...+......|+..+++ +|.+++..+.+.+.   .      +..   -...|..+.+    .+..+|.
T Consensus         4 rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~---~------~~~---~~~~~~~~ll----~~~~~D~   67 (344)
T 3ezy_A            4 RIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEK---L------GVE---KAYKDPHELI----EDPNVDA   67 (344)
T ss_dssp             EEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHH---H------TCS---EEESSHHHHH----HCTTCCE
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---h------CCC---ceeCCHHHHh----cCCCCCE
Confidence            477799985 433333333467888886 59988755433322   1      222   2245554433    3457899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      |++.-|+.+              -...+...|+.|-.+++.   +.+.+-+..+.+...+.+
T Consensus        68 V~i~tp~~~--------------h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g  115 (344)
T 3ezy_A           68 VLVCSSTNT--------------HSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKKAD  115 (344)
T ss_dssp             EEECSCGGG--------------HHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHHHT
T ss_pred             EEEcCCCcc--------------hHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            999877654              333444566667666654   234455556666665544

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=87.61  E-value=4  Score=35.91  Aligned_cols=110  Identities=11%  Similarity=0.031  Sum_probs=69.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc--cEEEEeCCcccccCccCCCCccc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ--NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~--nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ..||.||.+.|.++..++...+    +.+.-|--.-..++.|+..      ++++  +|.+...-     .  -....+|
T Consensus        40 ~~~~~~~d~~gal~~~~~~~~~----~~~~ds~~~~~~~~~n~~~------~~~~~~~~~~~~~~-----~--~~~~~~~  102 (375)
T 4dcm_A           40 GPVLILNDAFGALSCALAEHKP----YSIGDSYISELATRENLRL------NGIDESSVKFLDST-----A--DYPQQPG  102 (375)
T ss_dssp             SCEEEECCSSSHHHHHTGGGCC----EEEESCHHHHHHHHHHHHH------TTCCGGGSEEEETT-----S--CCCSSCS
T ss_pred             CCEEEECCCCCHHHHhhccCCc----eEEEhHHHHHHHHHHHHHH------cCCCccceEecccc-----c--ccccCCC
Confidence            4699999999999999986533    4443344443444445543      2444  36664432     1  1145789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhc
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      .|.+..|-.-.    .     -...|..+...|++|+.+++..++......+...+..
T Consensus       103 ~v~~~lpk~~~----~-----l~~~L~~l~~~l~~~~~i~~~g~~~~~~~~~~~~l~~  151 (375)
T 4dcm_A          103 VVLIKVPKTLA----L-----LEQQLRALRKVVTSDTRIIAGAKARDIHTSTLELFEK  151 (375)
T ss_dssp             EEEEECCSCHH----H-----HHHHHHHHHTTCCTTSEEEEEEEGGGCCHHHHHHHHH
T ss_pred             EEEEEcCCCHH----H-----HHHHHHHHHhhCCCCCEEEEEecccchHHHHHHHHHh
Confidence            99988763321    1     1347888888999999999888877655555555543

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=86.68  E-value=1.2  Score=38.06  Aligned_cols=91  Identities=14%  Similarity=0.171  Sum_probs=55.6

Q ss_pred             eEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc-ccccCccCCCCccc
Q 025470           68 QFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS-MKYIPNYFEKGQLT  144 (252)
Q Consensus        68 ~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da-~~~l~~~~~~~s~d  144 (252)
                      .||-+|+  |.|..++.+|+.. ++.+++++.+++.++.+++    +      +.+.+ +-..+. .+.+.. +....+|
T Consensus       152 ~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----l------Ga~~~-i~~~~~~~~~~~~-~~~~~~d  218 (328)
T 1xa0_A          152 PVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----L------GAKEV-LAREDVMAERIRP-LDKQRWA  218 (328)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----T------TCSEE-EECC----------CCSCCEE
T ss_pred             eEEEecCCCHHHHHHHHHHHHC-CCEEEEEECCHHHHHHHHH----c------CCcEE-EecCCcHHHHHHH-hcCCccc
Confidence            6999997  5688889999886 5689999999876665542    1      33322 111111 111111 2234577


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+-....               ..+....+.|++||++++.
T Consensus       219 ~vid~~g~---------------~~~~~~~~~l~~~G~~v~~  245 (328)
T 1xa0_A          219 AAVDPVGG---------------RTLATVLSRMRYGGAVAVS  245 (328)
T ss_dssp             EEEECSTT---------------TTHHHHHHTEEEEEEEEEC
T ss_pred             EEEECCcH---------------HHHHHHHHhhccCCEEEEE
Confidence            77654332               1466788899999999875

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=86.63  E-value=0.95  Score=39.39  Aligned_cols=93  Identities=14%  Similarity=0.182  Sum_probs=56.2

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||=+|+|. |.+++.+|+.. +..++++|.+++.++.+.+.         .+.+.+ +...+. +.+...  .+.+|
T Consensus       181 g~~VlV~GaG~vG~~a~qlak~~-Ga~Vi~~~~~~~~~~~~~~~---------lGa~~v-i~~~~~-~~~~~~--~~g~D  246 (357)
T 2cf5_A          181 GLRGGILGLGGVGHMGVKIAKAM-GHHVTVISSSNKKREEALQD---------LGADDY-VIGSDQ-AKMSEL--ADSLD  246 (357)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSTTHHHHHHTT---------SCCSCE-EETTCH-HHHHHS--TTTEE
T ss_pred             CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCChHHHHHHHHH---------cCCcee-eccccH-HHHHHh--cCCCC
Confidence            55788889875 77788888875 56899999998766554311         133322 111121 112111  13578


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .|+-.-..+.              .++...+.|++||++++.
T Consensus       247 ~vid~~g~~~--------------~~~~~~~~l~~~G~iv~~  274 (357)
T 2cf5_A          247 YVIDTVPVHH--------------ALEPYLSLLKLDGKLILM  274 (357)
T ss_dssp             EEEECCCSCC--------------CSHHHHTTEEEEEEEEEC
T ss_pred             EEEECCCChH--------------HHHHHHHHhccCCEEEEe
Confidence            7775544331              345667789999998875

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=86.21  E-value=6  Score=34.11  Aligned_cols=106  Identities=10%  Similarity=0.112  Sum_probs=59.8

Q ss_pred             eEEEEcCcc-cHHHHHHHHHCCCCeEEEE-ecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGCGF-GGLLISLSTLFPEVLMIGM-ELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGi-Dis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|.=||||. |...+......|+..++++ |.+++..+...+.   .      +.+   . ..|..+.    +.+..+|.
T Consensus         7 ~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~---~------g~~---~-~~~~~~~----l~~~~~D~   69 (354)
T 3db2_A            7 GVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKR---Y------NCA---G-DATMEAL----LAREDVEM   69 (354)
T ss_dssp             EEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHH---H------TCC---C-CSSHHHH----HHCSSCCE
T ss_pred             eEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHH---c------CCC---C-cCCHHHH----hcCCCCCE
Confidence            688899985 3333333334677777754 9888755433221   1      222   1 3454433    33557899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      |++.-|+..              -.+.+...|+.|-.+++.   +.+.+-+..+.+...+.+
T Consensus        70 V~i~tp~~~--------------h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~~~  117 (354)
T 3db2_A           70 VIITVPNDK--------------HAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKETG  117 (354)
T ss_dssp             EEECSCTTS--------------HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHC
T ss_pred             EEEeCChHH--------------HHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHHcC
Confidence            999888765              233444566666666553   233445555665555443

>2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A

Probab=86.03  E-value=3.9  Score=32.96  Aligned_cols=100  Identities=7%  Similarity=-0.090  Sum_probs=64.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC--CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFP--EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p--~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~~s  142 (252)
                      ..++=+||  |.++..+|+..-  +. ++++|.+++.++.+.              .++.++.+|+.+  .|.. ..-..
T Consensus        10 ~~viI~G~--G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~--------------~~~~~i~gd~~~~~~l~~-a~i~~   71 (234)
T 2aef_A           10 RHVVICGW--SESTLECLRELRGSEV-FVLAEDENVRKKVLR--------------SGANFVHGDPTRVSDLEK-ANVRG   71 (234)
T ss_dssp             CEEEEESC--CHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH--------------TTCEEEESCTTCHHHHHH-TTCTT
T ss_pred             CEEEEECC--ChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh--------------cCCeEEEcCCCCHHHHHh-cCcch
Confidence            46777887  577777777643  45 999999987654321              247788998753  1211 11246


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDW  195 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~  195 (252)
                      .|.|++..++.-.           ...+...++.+.|+..++....+.++...
T Consensus        72 ad~vi~~~~~d~~-----------n~~~~~~a~~~~~~~~iia~~~~~~~~~~  113 (234)
T 2aef_A           72 ARAVIVDLESDSE-----------TIHCILGIRKIDESVRIIAEAERYENIEQ  113 (234)
T ss_dssp             CSEEEECCSCHHH-----------HHHHHHHHHHHCSSSEEEEECSSGGGHHH
T ss_pred             hcEEEEcCCCcHH-----------HHHHHHHHHHHCCCCeEEEEECCHhHHHH
Confidence            7888887766421           13556667778888788887766665543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=85.94  E-value=7  Score=28.08  Aligned_cols=100  Identities=9%  Similarity=0.029  Sum_probs=55.4

Q ss_pred             eEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCCCcc
Q 025470           68 QFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEKGQL  143 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~~s~  143 (252)
                      .|+=+|||.  ++..+|..  ..+..++++|.+++.++.+..   .        . ++.++.+|...  .+.. ..-...
T Consensus         6 ~i~IiG~G~--iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~---~--------~-~~~~~~~d~~~~~~l~~-~~~~~~   70 (140)
T 1lss_A            6 YIIIAGIGR--VGYTLAKSLSEKGHDIVLIDIDKDICKKASA---E--------I-DALVINGDCTKIKTLED-AGIEDA   70 (140)
T ss_dssp             EEEEECCSH--HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH---H--------C-SSEEEESCTTSHHHHHH-TTTTTC
T ss_pred             EEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHH---h--------c-CcEEEEcCCCCHHHHHH-cCcccC
Confidence            577778854  44444433  135789999999875543221   1        1 34566676532  1111 112357


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD  194 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~  194 (252)
                      |.|++..|++..           ...+..+.+.+.++ .++..+....+.+
T Consensus        71 d~vi~~~~~~~~-----------~~~~~~~~~~~~~~-~ii~~~~~~~~~~  109 (140)
T 1lss_A           71 DMYIAVTGKEEV-----------NLMSSLLAKSYGIN-KTIARISEIEYKD  109 (140)
T ss_dssp             SEEEECCSCHHH-----------HHHHHHHHHHTTCC-CEEEECSSTTHHH
T ss_pred             CEEEEeeCCchH-----------HHHHHHHHHHcCCC-EEEEEecCHhHHH
Confidence            888888765421           12455666677775 5555565555543

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=85.73  E-value=0.92  Score=39.43  Aligned_cols=94  Identities=13%  Similarity=0.074  Sum_probs=58.8

Q ss_pred             CCceEEEEc-C-cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCC
Q 025470           65 KKIQFADIG-C-GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIG-c-G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~  139 (252)
                      ....||-+| + |.|..++.+|+.. +.+++++|.+++.++.+++    +      +.+.+  +..   |..+.+.... 
T Consensus       167 ~g~~VlV~Gg~g~iG~~~~~~a~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~~--~~~~~~~~~~~~~~~~-  232 (353)
T 4dup_A          167 EGESVLIHGGTSGIGTTAIQLARAF-GAEVYATAGSTGKCEACER----L------GAKRG--INYRSEDFAAVIKAET-  232 (353)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----H------TCSEE--EETTTSCHHHHHHHHH-
T ss_pred             CCCEEEEEcCCCHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----c------CCCEE--EeCCchHHHHHHHHHh-
Confidence            356899884 3 4588888888876 5689999999987766543    2      33221  221   1111121111 


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+|.++-+-..               ..+....+.|++||++++..
T Consensus       233 ~~g~Dvvid~~g~---------------~~~~~~~~~l~~~G~iv~~g  265 (353)
T 4dup_A          233 GQGVDIILDMIGA---------------AYFERNIASLAKDGCLSIIA  265 (353)
T ss_dssp             SSCEEEEEESCCG---------------GGHHHHHHTEEEEEEEEECC
T ss_pred             CCCceEEEECCCH---------------HHHHHHHHHhccCCEEEEEE
Confidence            3457877754432               25677888999999988753

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=85.70  E-value=2  Score=36.49  Aligned_cols=90  Identities=17%  Similarity=0.196  Sum_probs=58.7

Q ss_pred             eEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .||=+|+  |.|..++.+|+.. +.++++++.+++..+.+++    +      +.+.+ +-..+.. .+. .+..+.+|.
T Consensus       149 ~VlV~Ga~G~vG~~aiqla~~~-Ga~Vi~~~~~~~~~~~~~~----l------Ga~~v-i~~~~~~-~~~-~~~~~~~d~  214 (324)
T 3nx4_A          149 EVVVTGASGGVGSTAVALLHKL-GYQVAAVSGRESTHGYLKS----L------GANRI-LSRDEFA-ESR-PLEKQLWAG  214 (324)
T ss_dssp             CEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCGGGHHHHHH----H------TCSEE-EEGGGSS-CCC-SSCCCCEEE
T ss_pred             eEEEECCCcHHHHHHHHHHHHc-CCEEEEEeCCHHHHHHHHh----c------CCCEE-EecCCHH-HHH-hhcCCCccE
Confidence            3888997  5589999999986 5689999999987776653    2      33322 1111211 111 122346776


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ++-..               ....++...+.|+++|++++.
T Consensus       215 v~d~~---------------g~~~~~~~~~~l~~~G~iv~~  240 (324)
T 3nx4_A          215 AIDTV---------------GDKVLAKVLAQMNYGGCVAAC  240 (324)
T ss_dssp             EEESS---------------CHHHHHHHHHTEEEEEEEEEC
T ss_pred             EEECC---------------CcHHHHHHHHHHhcCCEEEEE
Confidence            65432               124788899999999999875

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=85.41  E-value=2  Score=37.34  Aligned_cols=93  Identities=14%  Similarity=0.150  Sum_probs=59.7

Q ss_pred             CceEEEEc--CcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCC
Q 025470           66 KIQFADIG--CGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIG--cG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~  140 (252)
                      ...||-+|  .|.|..++.+|+.. ++.+++++.+++.++.+++    +      +.+.+  +..   |..+.+.... .
T Consensus       164 g~~VlV~Ga~G~iG~~~~q~a~~~-Ga~Vi~~~~~~~~~~~~~~----~------Ga~~~--~~~~~~~~~~~~~~~~-~  229 (362)
T 2c0c_A          164 GKKVLVTAAAGGTGQFAMQLSKKA-KCHVIGTCSSDEKSAFLKS----L------GCDRP--INYKTEPVGTVLKQEY-P  229 (362)
T ss_dssp             TCEEEETTTTBTTHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----T------TCSEE--EETTTSCHHHHHHHHC-T
T ss_pred             CCEEEEeCCCcHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHH----c------CCcEE--EecCChhHHHHHHHhc-C
Confidence            56899999  45688899999886 5689999999877665542    1      33322  221   1111121111 2


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.|+-+...               ..++.+.+.|+++|++++..
T Consensus       230 ~g~D~vid~~g~---------------~~~~~~~~~l~~~G~iv~~g  261 (362)
T 2c0c_A          230 EGVDVVYESVGG---------------AMFDLAVDALATKGRLIVIG  261 (362)
T ss_dssp             TCEEEEEECSCT---------------HHHHHHHHHEEEEEEEEECC
T ss_pred             CCCCEEEECCCH---------------HHHHHHHHHHhcCCEEEEEe
Confidence            357777654321               37788899999999998764

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=85.33  E-value=7.1  Score=28.51  Aligned_cols=101  Identities=7%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             ceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccc--cCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKY--IPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~--l~~~~~~~s  142 (252)
                      ..|+=+|||.  ++..+|+.  ..+..++++|.+++.++.+..             ..+.++.+|+.+.  +.. ..-..
T Consensus         7 ~~v~I~G~G~--iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-------------~~~~~~~gd~~~~~~l~~-~~~~~   70 (141)
T 3llv_A            7 YEYIVIGSEA--AGVGLVRELTAAGKKVLAVDKSKEKIELLED-------------EGFDAVIADPTDESFYRS-LDLEG   70 (141)
T ss_dssp             CSEEEECCSH--HHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-------------TTCEEEECCTTCHHHHHH-SCCTT
T ss_pred             CEEEEECCCH--HHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-------------CCCcEEECCCCCHHHHHh-CCccc
Confidence            3688889865  55555443  126789999999986654321             1356778887531  211 12346


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDW  195 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~  195 (252)
                      .|.|++..++.-.           ...+....+.+. .+.++.......+.+.
T Consensus        71 ~d~vi~~~~~~~~-----------n~~~~~~a~~~~-~~~iia~~~~~~~~~~  111 (141)
T 3llv_A           71 VSAVLITGSDDEF-----------NLKILKALRSVS-DVYAIVRVSSPKKKEE  111 (141)
T ss_dssp             CSEEEECCSCHHH-----------HHHHHHHHHHHC-CCCEEEEESCGGGHHH
T ss_pred             CCEEEEecCCHHH-----------HHHHHHHHHHhC-CceEEEEEcChhHHHH
Confidence            7888887764321           124555566666 6667666666655443

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=84.82  E-value=12  Score=31.86  Aligned_cols=107  Identities=18%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             ceEEEEcCcc-cHHHHHHHH-HCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGF-GGLLISLST-LFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~-~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ..|.=||||. |...+.... ..++..+++ +|.++...+.+.+   .      .+.+  . ...|..+.    +.+..+
T Consensus         9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~---~------~g~~--~-~~~~~~~~----l~~~~~   72 (346)
T 3cea_A            9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKN---E------LGVE--T-TYTNYKDM----IDTENI   72 (346)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHH---T------TCCS--E-EESCHHHH----HTTSCC
T ss_pred             ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHH---H------hCCC--c-ccCCHHHH----hcCCCC
Confidence            4788999996 443333333 567777665 5998875433221   1      1322  1 23454433    334468


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENH  203 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~  203 (252)
                      |.|++.-|+..              ..+.+...|+.|-.+++.   +-+.+....+.+.....
T Consensus        73 D~V~i~tp~~~--------------h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~~  121 (346)
T 3cea_A           73 DAIFIVAPTPF--------------HPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKSH  121 (346)
T ss_dssp             SEEEECSCGGG--------------HHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHTC
T ss_pred             CEEEEeCChHh--------------HHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHhC
Confidence            99998876544              334455567776555542   12334455566666555

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=84.41  E-value=5.4  Score=34.60  Aligned_cols=106  Identities=11%  Similarity=0.083  Sum_probs=61.5

Q ss_pred             ceEEEEcCcc-cHHHHHHHHHCCCCeEEEE-ecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           67 IQFADIGCGF-GGLLISLSTLFPEVLMIGM-ELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGi-Dis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      -.|.=||||. |...+......|+..++|| |.+++..+.+.    .      .+.   . ...|..+.    +.+..+|
T Consensus         6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~----~------~g~---~-~~~~~~~l----l~~~~~D   67 (359)
T 3e18_A            6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAA----Q------KGL---K-IYESYEAV----LADEKVD   67 (359)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHH----T------TTC---C-BCSCHHHH----HHCTTCC
T ss_pred             CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH----h------cCC---c-eeCCHHHH----hcCCCCC
Confidence            3688899985 4443444445678888876 88887543321    1      122   1 12454433    3356789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      .|++.-|+..              -.+.+...|+.|-.+++.   +.+.+-+..+.+...+.+
T Consensus        68 ~V~i~tp~~~--------------h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g  116 (359)
T 3e18_A           68 AVLIATPNDS--------------HKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVN  116 (359)
T ss_dssp             EEEECSCGGG--------------HHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHHHT
T ss_pred             EEEEcCCcHH--------------HHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHHhC
Confidence            9999877654              334455666666555553   334455566666665544

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=83.96  E-value=1.5  Score=37.95  Aligned_cols=92  Identities=9%  Similarity=0.087  Sum_probs=56.5

Q ss_pred             ceEEEEcC--cccHHHHHHHHHCCCC-eEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCC
Q 025470           67 IQFADIGC--GFGGLLISLSTLFPEV-LMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEK  140 (252)
Q Consensus        67 ~~vLDIGc--G~G~~~~~lA~~~p~~-~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~  140 (252)
                      ..||-+|+  |.|..++.+|+.. +. .+++++.+++.++.+.+.   +      +...  ++..   +..+.+.... .
T Consensus       162 ~~vlI~GasggiG~~~~~~a~~~-Ga~~Vi~~~~~~~~~~~~~~~---~------g~~~--~~d~~~~~~~~~~~~~~-~  228 (357)
T 2zb4_A          162 KTMVVSGAAGACGSVAGQIGHFL-GCSRVVGICGTHEKCILLTSE---L------GFDA--AINYKKDNVAEQLRESC-P  228 (357)
T ss_dssp             CEEEESSTTBHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHHHT---S------CCSE--EEETTTSCHHHHHHHHC-T
T ss_pred             cEEEEECCCcHHHHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHH---c------CCce--EEecCchHHHHHHHHhc-C
Confidence            68999998  5577778888875 55 899999998765544321   1      2221  1221   1111111111 2


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +.+|.++-+-.               ...++.+.+.|++||++++.
T Consensus       229 ~~~d~vi~~~G---------------~~~~~~~~~~l~~~G~iv~~  259 (357)
T 2zb4_A          229 AGVDVYFDNVG---------------GNISDTVISQMNENSHIILC  259 (357)
T ss_dssp             TCEEEEEESCC---------------HHHHHHHHHTEEEEEEEEEC
T ss_pred             CCCCEEEECCC---------------HHHHHHHHHHhccCcEEEEE
Confidence            25777765432               14788889999999999875

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=83.90  E-value=5  Score=40.12  Aligned_cols=80  Identities=16%  Similarity=0.162  Sum_probs=53.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc-----------
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI-----------  134 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l-----------  134 (252)
                      ...+||+-||.|.++..+.+..=...+.++|+++.+++.-+.|           .++..++..|+.+.+           
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N-----------~p~~~~~~~DI~~l~~~~~~~di~~~  608 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLN-----------NPGSTVFTEDCNILLKLVMAGETTNS  608 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHH-----------CTTSEEECSCHHHHHHHHHHTCSBCT
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHh-----------CCCCccccccHHHHhhhccchhhhhh
Confidence            4589999999999999998883112578999999876543322           345667777764321           


Q ss_pred             -CccCC-CCcccEEEEeCCCCccc
Q 025470          135 -PNYFE-KGQLTKMFFLFPDPHFK  156 (252)
Q Consensus       135 -~~~~~-~~s~d~i~~~fpdP~~k  156 (252)
                       ...++ .+.+|.|+.-+|..-+.
T Consensus       609 ~~~~lp~~~~vDll~GGpPCQ~FS  632 (1002)
T 3swr_A          609 RGQRLPQKGDVEMLCGGPPCQGFS  632 (1002)
T ss_dssp             TCCBCCCTTTCSEEEECCCCTTCC
T ss_pred             hhhhcccCCCeeEEEEcCCCcchh
Confidence             11122 45799999988865543

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=83.85  E-value=1.4  Score=39.37  Aligned_cols=37  Identities=14%  Similarity=0.238  Sum_probs=29.4

Q ss_pred             eEEEEcCcccHHHHHHHHH---C----CCCeEEEEecCHhHHHH
Q 025470           68 QFADIGCGFGGLLISLSTL---F----PEVLMIGMELRDKVTEY  104 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~---~----p~~~~iGiDis~~~i~~  104 (252)
                      .|+|+|.|+|.++..+.+.   .    ....|+-||+|+...+.
T Consensus        83 ~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~  126 (387)
T 1zkd_A           83 RLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQK  126 (387)
T ss_dssp             EEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHH
Confidence            6999999999998877653   2    24589999999987653

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=83.56  E-value=10  Score=32.43  Aligned_cols=106  Identities=11%  Similarity=0.061  Sum_probs=61.0

Q ss_pred             eEEEEcCcc-cHHHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGCGF-GGLLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|.=||||. |...+......|+..+++ +|.+++..+...+   .      .+   +.. ..|..+.    +.+..+|.
T Consensus         6 rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~------~g---~~~-~~~~~~~----l~~~~~D~   68 (344)
T 3euw_A            6 RIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAE---A------NG---AEA-VASPDEV----FARDDIDG   68 (344)
T ss_dssp             EEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH---T------TT---CEE-ESSHHHH----TTCSCCCE
T ss_pred             EEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHH---H------cC---Cce-eCCHHHH----hcCCCCCE
Confidence            678899987 444444444567888775 6888765432221   1      12   222 3455433    34567899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      |++.-|+..              -.+.+...|+.|-.+++.   +.+.+-+..+.+...+.+
T Consensus        69 V~i~tp~~~--------------h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~~g  116 (344)
T 3euw_A           69 IVIGSPTST--------------HVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGDGA  116 (344)
T ss_dssp             EEECSCGGG--------------HHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGGGG
T ss_pred             EEEeCCchh--------------hHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHhcC
Confidence            999877655              334445566666655552   233455566666666554

>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5

Probab=83.41  E-value=14  Score=31.64  Aligned_cols=109  Identities=17%  Similarity=0.107  Sum_probs=60.0

Q ss_pred             ceEEEEcCcc--cH-HHHHHHHHCCCCeEE-EEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           67 IQFADIGCGF--GG-LLISLSTLFPEVLMI-GMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~--G~-~~~~lA~~~p~~~~i-GiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      -.|.=||||.  |. ++..+....|+..++ .+|.+++..+.+.+.   .      +..   -...|..+.+    .+..
T Consensus        19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~---~------~~~---~~~~~~~~ll----~~~~   82 (340)
T 1zh8_A           19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKM---V------GNP---AVFDSYEELL----ESGL   82 (340)
T ss_dssp             EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHH---H------SSC---EEESCHHHHH----HSSC
T ss_pred             eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHH---h------CCC---cccCCHHHHh----cCCC
Confidence            4788899993  54 344443332677665 468888755433322   1      221   2345655433    3557


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCCC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~~  205 (252)
                      +|.|++.-|+.+              -.+.+...|+.|=.+++.   +.+.+-+..|.+...+.+.
T Consensus        83 vD~V~i~tp~~~--------------H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~  134 (340)
T 1zh8_A           83 VDAVDLTLPVEL--------------NLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEKSEK  134 (340)
T ss_dssp             CSEEEECCCGGG--------------HHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHHCSS
T ss_pred             CCEEEEeCCchH--------------HHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence            999999877655              223344555555555543   2244455556666555543

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=83.36  E-value=4  Score=37.52  Aligned_cols=88  Identities=13%  Similarity=-0.033  Sum_probs=54.0

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|+=||+|. |..+..+++.. +.+|+++|.++...+.|..          .+..   +  .+..+.+      ...|
T Consensus       274 GktV~IiG~G~IG~~~A~~lka~-Ga~Viv~d~~~~~~~~A~~----------~Ga~---~--~~l~e~l------~~aD  331 (494)
T 3ce6_A          274 GKKVLICGYGDVGKGCAEAMKGQ-GARVSVTEIDPINALQAMM----------EGFD---V--VTVEEAI------GDAD  331 (494)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCHHHHHHHHH----------TTCE---E--CCHHHHG------GGCS
T ss_pred             cCEEEEEccCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----------cCCE---E--ecHHHHH------hCCC
Confidence            45799999976 55556666655 5689999999876544432          1332   2  2332222      2468


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|+..-+.+.         ++.    .+..+.||+||+++...-
T Consensus       332 vVi~atgt~~---------~i~----~~~l~~mk~ggilvnvG~  362 (494)
T 3ce6_A          332 IVVTATGNKD---------IIM----LEHIKAMKDHAILGNIGH  362 (494)
T ss_dssp             EEEECSSSSC---------SBC----HHHHHHSCTTCEEEECSS
T ss_pred             EEEECCCCHH---------HHH----HHHHHhcCCCcEEEEeCC
Confidence            8887654332         122    245567899999987653

>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly (A) polymerase, mRNA processing, transcription; HET: SAH 3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A* 1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A* 1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A* 2gaf_A 3er8_A 2ga9_A* 3erc_A*

Probab=82.89  E-value=0.86  Score=39.00  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=30.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCC----CeEEEEecCHh
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPE----VLMIGMELRDK  100 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~----~~~iGiDis~~  100 (252)
                      +..|+=||||.|.++..|++.+|.    ..++.+|..+.
T Consensus        61 ~~~VVYVGSApG~HL~~L~~~fp~~f~~ikWvLiDPap~   99 (307)
T 3mag_A           61 GATVVYIGSAPGTHIRYLRDHFYNLGVIIKWMLIDGRHH   99 (307)
T ss_dssp             TCEEEEESCCSCHHHHHHHHHHHHTTCCCEEEEEESSCC
T ss_pred             CcEEEEecccCccHHHHHHHhchhhCCCeEEEEEcCCcc
Confidence            459999999999999999998775    58999998664

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=82.78  E-value=3.7  Score=36.16  Aligned_cols=100  Identities=9%  Similarity=0.078  Sum_probs=55.6

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|+=||+|. |..+..++... +..++++|.++..++.+.+.+         +.. +.....+.. .+...+  ...|
T Consensus       168 g~~V~ViG~G~iG~~~a~~a~~~-Ga~V~~~d~~~~~l~~~~~~~---------g~~-~~~~~~~~~-~l~~~l--~~aD  233 (377)
T 2vhw_A          168 PADVVVIGAGTAGYNAARIANGM-GATVTVLDINIDKLRQLDAEF---------CGR-IHTRYSSAY-ELEGAV--KRAD  233 (377)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT---------TTS-SEEEECCHH-HHHHHH--HHCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEeCCHHHHHHHHHhc---------CCe-eEeccCCHH-HHHHHH--cCCC
Confidence            45899999976 55555566555 458999999998765554321         111 112111111 121112  2468


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+..-+.|..+.    ..++    .++..+.|+|||.|+...
T Consensus       234 vVi~~~~~p~~~t----~~li----~~~~l~~mk~g~~iV~va  268 (377)
T 2vhw_A          234 LVIGAVLVPGAKA----PKLV----SNSLVAHMKPGAVLVDIA  268 (377)
T ss_dssp             EEEECCCCTTSCC----CCCB----CHHHHTTSCTTCEEEEGG
T ss_pred             EEEECCCcCCCCC----ccee----cHHHHhcCCCCcEEEEEe
Confidence            8877554443211    1222    345566789999887654

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=82.50  E-value=9.9  Score=33.89  Aligned_cols=43  Identities=12%  Similarity=-0.038  Sum_probs=32.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCe----EEEEecCHhHHHHHHHHH
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVL----MIGMELRDKVTEYVKERI  109 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~----~iGiDis~~~i~~a~~~~  109 (252)
                      -.|||+-||.|.+...+.+..- -..    +.++|+++.+++.-..+.
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~   58 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIH   58 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHH
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHc
Confidence            4899999999999999888731 123    788999998776544443

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=82.41  E-value=5.2  Score=34.21  Aligned_cols=109  Identities=6%  Similarity=-0.044  Sum_probs=61.0

Q ss_pred             ceEEEEcCcc-cHHHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           67 IQFADIGCGF-GGLLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      -.|.=||||. |...+......++..++| +|.+++..+.+.+   .      .+.+.   ...|..+.    +.+..+|
T Consensus         6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~---~------~~~~~---~~~~~~~l----l~~~~~D   69 (330)
T 3e9m_A            6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAK---E------LAIPV---AYGSYEEL----CKDETID   69 (330)
T ss_dssp             EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHH---H------TTCCC---CBSSHHHH----HHCTTCS
T ss_pred             EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH---H------cCCCc---eeCCHHHH----hcCCCCC
Confidence            3688899995 443344444457878876 4888765433222   1      13221   22444432    3355789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~~  205 (252)
                      .|++.-|+..              -.+.+...|+.|-.+++.   +.+.+-+..+.+...+.+.
T Consensus        70 ~V~i~tp~~~--------------h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~  119 (330)
T 3e9m_A           70 IIYIPTYNQG--------------HYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQEQGV  119 (330)
T ss_dssp             EEEECCCGGG--------------HHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHHTTC
T ss_pred             EEEEcCCCHH--------------HHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcCC
Confidence            9999877654              333444566666555542   2344555666666665544

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=82.41  E-value=3.8  Score=35.67  Aligned_cols=93  Identities=10%  Similarity=0.107  Sum_probs=55.9

Q ss_pred             CCceEEEEc-Cc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCC
Q 025470           65 KKIQFADIG-CG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFE  139 (252)
Q Consensus        65 ~~~~vLDIG-cG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~  139 (252)
                      ....||=+| +| .|..++.+|+.. ++.+++++ ++...+.++    ++      +.+.+  +..   |..+.+..   
T Consensus       183 ~g~~VlV~Ga~G~vG~~~~qla~~~-Ga~Vi~~~-~~~~~~~~~----~l------Ga~~v--~~~~~~~~~~~~~~---  245 (375)
T 2vn8_A          183 TGKRVLILGASGGVGTFAIQVMKAW-DAHVTAVC-SQDASELVR----KL------GADDV--IDYKSGSVEEQLKS---  245 (375)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHH----HT------TCSEE--EETTSSCHHHHHHT---
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHhC-CCEEEEEe-ChHHHHHHH----Hc------CCCEE--EECCchHHHHHHhh---
Confidence            356899999 45 488888899886 56899998 665554442    22      33322  221   11111211   


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+|.|+-.-..+.             ..+....+.|++||++++..
T Consensus       246 ~~g~D~vid~~g~~~-------------~~~~~~~~~l~~~G~iv~~g  280 (375)
T 2vn8_A          246 LKPFDFILDNVGGST-------------ETWAPDFLKKWSGATYVTLV  280 (375)
T ss_dssp             SCCBSEEEESSCTTH-------------HHHGGGGBCSSSCCEEEESC
T ss_pred             cCCCCEEEECCCChh-------------hhhHHHHHhhcCCcEEEEeC
Confidence            135788876544432             24466677899999998764

>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*

Probab=82.35  E-value=11  Score=32.37  Aligned_cols=107  Identities=15%  Similarity=0.081  Sum_probs=59.6

Q ss_pred             ceEEEEcCcc-cHH-HHHHHHHCCCCeEE-EEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGF-GGL-LISLSTLFPEVLMI-GMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~-G~~-~~~lA~~~p~~~~i-GiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      -.|.=||||. |.. +..+++..++..++ .+|.+++..+.+.+.   .      +   + -...|..+.+    .+..+
T Consensus        14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~---~------~---~-~~~~~~~~ll----~~~~~   76 (354)
T 3q2i_A           14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVER---T------G---A-RGHASLTDML----AQTDA   76 (354)
T ss_dssp             EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHH---H------C---C-EEESCHHHHH----HHCCC
T ss_pred             ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHH---c------C---C-ceeCCHHHHh----cCCCC
Confidence            4788999994 443 33333333777776 569988765443322   1      3   3 2345554433    34578


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      |.|++.-|+..              -.+.+...|+.|-.+++.   +.+.+-...+.+.....+
T Consensus        77 D~V~i~tp~~~--------------h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g  126 (354)
T 3q2i_A           77 DIVILTTPSGL--------------HPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADKAK  126 (354)
T ss_dssp             SEEEECSCGGG--------------HHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHHHT
T ss_pred             CEEEECCCcHH--------------HHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHHhC
Confidence            99999877654              233344556666555552   223444555555555443

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=82.07  E-value=3.5  Score=36.08  Aligned_cols=100  Identities=10%  Similarity=0.139  Sum_probs=53.4

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|+=+|+|. |..+..++... ++.++++|.++..++.+.+..         +. .+.....+.. .+...+  ..+|
T Consensus       166 ~~~V~ViGaG~iG~~~a~~l~~~-Ga~V~~~d~~~~~~~~~~~~~---------g~-~~~~~~~~~~-~l~~~~--~~~D  231 (369)
T 2eez_A          166 PASVVILGGGTVGTNAAKIALGM-GAQVTILDVNHKRLQYLDDVF---------GG-RVITLTATEA-NIKKSV--QHAD  231 (369)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHT---------TT-SEEEEECCHH-HHHHHH--HHCS
T ss_pred             CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHHhc---------Cc-eEEEecCCHH-HHHHHH--hCCC
Confidence            35799999964 44445555554 568999999987665543211         22 1322222221 122222  2568


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+.+-+.+..+..    .+    +.+.+.+.|++||.++...
T Consensus       232 vVi~~~g~~~~~~~----~l----i~~~~l~~mk~gg~iV~v~  266 (369)
T 2eez_A          232 LLIGAVLVPGAKAP----KL----VTRDMLSLMKEGAVIVDVA  266 (369)
T ss_dssp             EEEECCC-----------CC----SCHHHHTTSCTTCEEEECC
T ss_pred             EEEECCCCCccccc----hh----HHHHHHHhhcCCCEEEEEe
Confidence            88766554321111    12    2345667789999887654

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=81.84  E-value=2.1  Score=36.55  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=56.5

Q ss_pred             eEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc-ccccCccCCCCccc
Q 025470           68 QFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS-MKYIPNYFEKGQLT  144 (252)
Q Consensus        68 ~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da-~~~l~~~~~~~s~d  144 (252)
                      .||=+|+  |.|..++.+|+.. +..+++++.+++.++.+++    +      +.+.+ +-..+. .+.+.. +....+|
T Consensus       153 ~VlV~Ga~G~vG~~~~q~a~~~-Ga~vi~~~~~~~~~~~~~~----l------Ga~~v-~~~~~~~~~~~~~-~~~~~~d  219 (330)
T 1tt7_A          153 SVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----L------GASEV-ISREDVYDGTLKA-LSKQQWQ  219 (330)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----H------TCSEE-EEHHHHCSSCCCS-SCCCCEE
T ss_pred             eEEEECCCCHHHHHHHHHHHHC-CCEEEEEeCCHHHHHHHHH----c------CCcEE-EECCCchHHHHHH-hhcCCcc
Confidence            6999997  5588888888875 4679999998876666543    2      33322 111111 111111 2234577


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .++-....               ..+....+.|++||++++.
T Consensus       220 ~vid~~g~---------------~~~~~~~~~l~~~G~iv~~  246 (330)
T 1tt7_A          220 GAVDPVGG---------------KQLASLLSKIQYGGSVAVS  246 (330)
T ss_dssp             EEEESCCT---------------HHHHHHHTTEEEEEEEEEC
T ss_pred             EEEECCcH---------------HHHHHHHHhhcCCCEEEEE
Confidence            77644321               3677888999999999875

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=81.72  E-value=3.4  Score=37.14  Aligned_cols=41  Identities=12%  Similarity=0.049  Sum_probs=32.4

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHH
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVK  106 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~  106 (252)
                      +...||=+|+  |.|..++.+|+.. +..+++++.++..++.++
T Consensus       228 ~g~~VlV~GasG~vG~~avqlak~~-Ga~vi~~~~~~~~~~~~~  270 (456)
T 3krt_A          228 QGDNVLIWGASGGLGSYATQFALAG-GANPICVVSSPQKAEICR  270 (456)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHc-CCeEEEEECCHHHHHHHH
Confidence            3568999997  4588888999886 668999998888777664

>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}

Probab=81.66  E-value=8.7  Score=33.24  Aligned_cols=109  Identities=7%  Similarity=0.075  Sum_probs=63.9

Q ss_pred             ceEEEEcCcc-cHH-HHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           67 IQFADIGCGF-GGL-LISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIGcG~-G~~-~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      -.|.=||||. |.. +..++...|+..++| +|.+++..+.+.+..         +. .+. ...|..+.    +.+..+
T Consensus        24 ~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~---------g~-~~~-~~~~~~~l----l~~~~~   88 (357)
T 3ec7_A           24 LKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKY---------AI-EAK-DYNDYHDL----INDKDV   88 (357)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHH---------TC-CCE-EESSHHHH----HHCTTC
T ss_pred             eeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHh---------CC-CCe-eeCCHHHH----hcCCCC
Confidence            3688899997 433 333443567888775 688887654433221         21 112 23455443    334578


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      |.|++.-|+..              -.+.+...|+.|-.+++.   +.+.+-+..+.+...+.+
T Consensus        89 D~V~i~tp~~~--------------h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g  138 (357)
T 3ec7_A           89 EVVIITASNEA--------------HADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKNG  138 (357)
T ss_dssp             CEEEECSCGGG--------------HHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEcCCcHH--------------HHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHhC
Confidence            99999877654              334455667777666653   234555666666666554

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=81.59  E-value=0.97  Score=40.89  Aligned_cols=44  Identities=18%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             ceEEEEcCcccHHHHHHHHHC----C-CCeEEEEecCHhHHHHHHHHHH
Q 025470           67 IQFADIGCGFGGLLISLSTLF----P-EVLMIGMELRDKVTEYVKERIL  110 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~----p-~~~~iGiDis~~~i~~a~~~~~  110 (252)
                      ..|+|+|.|+|.++..+.+..    + ...|+-||+|+...+.-++++.
T Consensus       139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~  187 (432)
T 4f3n_A          139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLG  187 (432)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHH
T ss_pred             CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHh
Confidence            489999999999888776532    1 2479999999987765555554

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=81.49  E-value=9.5  Score=28.37  Aligned_cols=105  Identities=10%  Similarity=-0.048  Sum_probs=62.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHC--CCCeEEEEecC-HhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCCC
Q 025470           67 IQFADIGCGFGGLLISLSTLF--PEVLMIGMELR-DKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEKG  141 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~--p~~~~iGiDis-~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~~  141 (252)
                      ..|+=+||  |.++..+++..  .+..++.+|.+ ++.++.....   .       ..++.++.+|+.+  .+.. ..-.
T Consensus         4 ~~vlI~G~--G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~---~-------~~~~~~i~gd~~~~~~l~~-a~i~   70 (153)
T 1id1_A            4 DHFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQLEQR---L-------GDNADVIPGDSNDSSVLKK-AGID   70 (153)
T ss_dssp             SCEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHH---H-------CTTCEEEESCTTSHHHHHH-HTTT
T ss_pred             CcEEEECC--CHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHh---h-------cCCCeEEEcCCCCHHHHHH-cChh
Confidence            35676776  55555555542  35789999997 4433222211   1       1247788998753  1211 1124


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDW  195 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~  195 (252)
                      ..|.|++..++.-.           ...+...++.+.|...++...++.++.+.
T Consensus        71 ~ad~vi~~~~~d~~-----------n~~~~~~a~~~~~~~~ii~~~~~~~~~~~  113 (153)
T 1id1_A           71 RCRAILALSDNDAD-----------NAFVVLSAKDMSSDVKTVLAVSDSKNLNK  113 (153)
T ss_dssp             TCSEEEECSSCHHH-----------HHHHHHHHHHHTSSSCEEEECSSGGGHHH
T ss_pred             hCCEEEEecCChHH-----------HHHHHHHHHHHCCCCEEEEEECCHHHHHH
Confidence            57888887765421           13666677788788888888877766553

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=81.36  E-value=3  Score=36.39  Aligned_cols=95  Identities=12%  Similarity=0.058  Sum_probs=58.1

Q ss_pred             CCceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCcccccCccCCCC
Q 025470           65 KKIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYIPNYFEKG  141 (252)
Q Consensus        65 ~~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~~~~  141 (252)
                      ....||=+|+  |.|..++.+|+.. +..++++. ++..++.+++    +      +.+.+--. ..|..+.+.. +..+
T Consensus       164 ~g~~VlV~Ga~G~vG~~a~qla~~~-Ga~Vi~~~-~~~~~~~~~~----l------Ga~~vi~~~~~~~~~~v~~-~t~g  230 (371)
T 3gqv_A          164 KPVYVLVYGGSTATATVTMQMLRLS-GYIPIATC-SPHNFDLAKS----R------GAEEVFDYRAPNLAQTIRT-YTKN  230 (371)
T ss_dssp             SCCEEEEESTTSHHHHHHHHHHHHT-TCEEEEEE-CGGGHHHHHH----T------TCSEEEETTSTTHHHHHHH-HTTT
T ss_pred             CCcEEEEECCCcHHHHHHHHHHHHC-CCEEEEEe-CHHHHHHHHH----c------CCcEEEECCCchHHHHHHH-HccC
Confidence            4568999998  3699999999986 56888884 7776655432    2      43322110 1122212221 1234


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhh-cCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVL-GVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~L-kpgG~l~~~  186 (252)
                      .+|.++-.-..              ...++...+.| ++||++++.
T Consensus       231 ~~d~v~d~~g~--------------~~~~~~~~~~l~~~~G~iv~~  262 (371)
T 3gqv_A          231 NLRYALDCITN--------------VESTTFCFAAIGRAGGHYVSL  262 (371)
T ss_dssp             CCCEEEESSCS--------------HHHHHHHHHHSCTTCEEEEES
T ss_pred             CccEEEECCCc--------------hHHHHHHHHHhhcCCCEEEEE
Confidence            48888754432              24788888899 699998874

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=81.22  E-value=11  Score=26.02  Aligned_cols=104  Identities=8%  Similarity=0.030  Sum_probs=55.6

Q ss_pred             ceEEEEcCcccHHHHHHHH---HCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCCC
Q 025470           67 IQFADIGCGFGGLLISLST---LFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEKG  141 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~---~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~~  141 (252)
                      ..|+=+|+|  .++..+++   ......++++|.++..++.+.             ..++.++.+|...  .+...+  .
T Consensus         6 ~~v~I~G~G--~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-------------~~~~~~~~~d~~~~~~~~~~~--~   68 (118)
T 3ic5_A            6 WNICVVGAG--KIGQMIAALLKTSSNYSVTVADHDLAALAVLN-------------RMGVATKQVDAKDEAGLAKAL--G   68 (118)
T ss_dssp             EEEEEECCS--HHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-------------TTTCEEEECCTTCHHHHHHHT--T
T ss_pred             CeEEEECCC--HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-------------hCCCcEEEecCCCHHHHHHHH--c
Confidence            468889994  44444433   343378999999987544322             1235566666542  122222  2


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      .+|.|+..-|...              ....+...++.|...+..+......+.+.+...
T Consensus        69 ~~d~vi~~~~~~~--------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  114 (118)
T 3ic5_A           69 GFDAVISAAPFFL--------------TPIIAKAAKAAGAHYFDLTEDVAATNAVRALVE  114 (118)
T ss_dssp             TCSEEEECSCGGG--------------HHHHHHHHHHTTCEEECCCSCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCchh--------------hHHHHHHHHHhCCCEEEecCcHHHHHHHHHHHH
Confidence            5788776653211              222233344566665555655556666554433

>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}

Probab=80.53  E-value=11  Score=32.95  Aligned_cols=70  Identities=14%  Similarity=0.247  Sum_probs=41.4

Q ss_pred             eEEEEcCc-c-cHHHHHHHHHCCCCeEEE-EecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           68 QFADIGCG-F-GGLLISLSTLFPEVLMIG-MELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        68 ~vLDIGcG-~-G~~~~~lA~~~p~~~~iG-iDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      .|.=|||| . |...+......|+..+++ +|.+++..+.+.+   ..      +.   . ...|..+.+    .+..+|
T Consensus         4 rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~---~~------g~---~-~~~~~~ell----~~~~vD   66 (387)
T 3moi_A            4 RFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGK---EY------GI---P-VFATLAEMM----QHVQMD   66 (387)
T ss_dssp             EEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHH---HH------TC---C-EESSHHHHH----HHSCCS
T ss_pred             EEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHH---Hc------CC---C-eECCHHHHH----cCCCCC
Confidence            57779999 4 333344444567777765 5888775443322   11      32   2 245655433    345789


Q ss_pred             EEEEeCCCCc
Q 025470          145 KMFFLFPDPH  154 (252)
Q Consensus       145 ~i~~~fpdP~  154 (252)
                      .|++.-|+..
T Consensus        67 ~V~i~tp~~~   76 (387)
T 3moi_A           67 AVYIASPHQF   76 (387)
T ss_dssp             EEEECSCGGG
T ss_pred             EEEEcCCcHH
Confidence            9999877654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d2fcaa1	204	c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltr	1e-17
d1yzha1	204	c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltra	5e-16
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	0.001
d2h00a1	250	c.66.1.54 (A:5-254) Methyltransferase 10 domain co	0.003

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

 Score = 76.8 bits (188), Expect = 1e-17
 Identities = 35/177 (19%), Positives = 73/177 (41%), Gaps = 9/177 (5%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           ++G G G  +  ++   P++  IG+EL   V     +++      N              
Sbjct: 35  EVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNID------- 87

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
              + + FE G++ +++  F DP  K+++ +RR+   H L +Y  V+G GG I+  TD  
Sbjct: 88  ADTLTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNR 147

Query: 191 ELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRR 247
            L ++       + +       +L    +   + +  E  +K +  G   ++A    
Sbjct: 148 GLFEYSLKSFSEYGLLLTYVSLDLHNSNLEGNIMTEYE--EKFSALGQPIYRAEVEW 202

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} Length = 204

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 72.2 bits (176), Expect = 5e-16
 Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 12/170 (7%)

Query: 71  DIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS 130
           ++G G G  +  ++   P++  IG++++  V  Y      AL         NI ++  + 
Sbjct: 37  EVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSY------ALDKVLEVGVPNIKLLWVDG 90

Query: 131 MKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE 190
              + +YFE G++ +++  F DP  K+++ +RR+     LD +  +L   G I+  TD  
Sbjct: 91  SD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNR 149

Query: 191 ELGDWMRSCLENHPMF-----EALTKEELEADPVVKLLSSATEEGQKVAR 235
            L ++       + M        L   + E + + +     + +GQ + R
Sbjct: 150 GLFEYSLVSFSQYGMKLNGVWLDLHASDFEGNVMTEYEQKFSNKGQVIYR 199

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.001
 Identities = 34/200 (17%), Positives = 65/200 (32%), Gaps = 33/200 (16%)

Query: 42  PSHVDYSLHYPHFFPPADQVNCSKKIQFADI---------GCGFGGLLISLS-TLFPEVL 91
           P+  DY +            + +  +   DI         G G GG+ + LS  +  +  
Sbjct: 66  PALEDYVVLMKRGTAITFPKDINMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGR 125

Query: 92  MIGMELRDKVTEYVKERI----LALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF 147
           +I  E+R    +  K+       + ++S+  ++ +        +       +      + 
Sbjct: 126 VISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFDAVA 185

Query: 148 FLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY----TITDVEELGDWMRSCLENH 203
               +PH               L  +   L  GG+       IT V EL D +R+C    
Sbjct: 186 LDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTC--EL 230

Query: 204 PMFEALTKEELEADPVVKLL 223
            +      E +  D +V L 
Sbjct: 231 ALSCEKISEVIVRDWLVCLA 250

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.003
 Identities = 27/160 (16%), Positives = 54/160 (33%), Gaps = 5/160 (3%)

Query: 38  VPISPSHVDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMEL 97
           +P  P  ++Y +H+          + S   +  DIG G   +   L         +  E+
Sbjct: 35  IPTVPLRLNY-IHWVEDLIGHQDSDKSTLRRGIDIGTGASCIYPLLGATLNGWYFLATEV 93

Query: 98  RDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKE 157
            D    Y K+ +    +S+  +   +          +    E+ ++   F +   P F  
Sbjct: 94  DDMCFNYAKKNVEQNNLSDLIKVVKV----PQKTLLMDALKEESEIIYDFCMCNPPFFAN 149

Query: 158 KNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMR 197
           +   + V S +        +  GGI   + +  EL    R
Sbjct: 150 QLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVKR 189

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	100.0
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	100.0
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.78
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.78
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.76
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.75
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.71
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.7
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.69
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.69
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.68
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.68
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.68
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.66
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.63
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.63
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.62
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.62
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.61
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.61
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.61
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.6
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.59
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.59
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.59
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.59
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.56
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.56
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.54
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.54
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.53
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.53
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.53
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.52
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.52
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.5
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.49
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.48
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.47
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.47
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.4
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.38
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.38
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.37
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.36
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.36
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.32
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.3
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.3
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.3
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.26
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.25
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	99.24
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.22
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.22
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.21
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.2
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.19
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	99.19
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	99.17
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.16
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	99.14
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.14
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.14
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	99.13
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.12
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	99.09
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.05
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.04
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	99.03
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.99
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.97
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	98.97
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.94
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	98.93
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	98.89
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	98.88
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.84
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.82
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.81
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.76
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	98.72
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.7
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.69
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	98.62
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	98.62
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.56
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	98.55
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.47
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.31
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.29
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.27
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.24
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.21
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.16
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	98.04
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.0
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.89
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.7
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	97.61
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.25
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	97.09
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	96.94
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	96.58
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	96.56
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	96.55
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	96.52
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	96.51
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	96.4
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	96.27
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.19
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	95.88
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	95.85
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	95.36
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	95.2
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	95.17
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	95.08
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	94.58
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.54
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	94.31
d1ydwa1	184	Probable oxidoreductase At4g09670 {Thale cress (Ar	93.83
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	93.81
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	93.67
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	93.39
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	93.37
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	93.37
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	93.0
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	92.85
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	92.79
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.75
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	92.68
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	92.36
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	92.27
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	92.0
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	91.76
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	91.5
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	91.43
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	91.28
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	91.24
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	91.2
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	90.51
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	88.44
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	88.11
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	88.03
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	86.78
d1h6da1	221	Glucose-fructose oxidoreductase, N-terminal domain	86.58
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	86.13
d1xeaa1	167	Putative oxidoreductase VCA1048 {Vibrio cholerae [	85.93
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	85.85
d1uxja1	142	Malate dehydrogenase {Chloroflexus aurantiacus [Ta	84.43
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	83.01
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.54
d1l7da1	183	Nicotinamide nucleotide transhydrogenase dI compon	81.17
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	80.9

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=100.00  E-value=1.8e-42  Score=286.78  Aligned_cols=181  Identities=20%  Similarity=0.358  Sum_probs=160.1

Q ss_pred             CCccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE
Q 025470           45 VDYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS  124 (252)
Q Consensus        45 ~~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~  124 (252)
                      .+|.++|++.           +|+|||||||+|.++..+|+.+|+.+++|||+++.++..|.+++...      +++||+
T Consensus        22 ~~w~~~f~~~-----------~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~------~l~Ni~   84 (204)
T d1yzha1          22 AKWRDLFGND-----------NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV------GVPNIK   84 (204)
T ss_dssp             TTHHHHHTSC-----------CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH------CCSSEE
T ss_pred             ccHHHHcCCC-----------CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhh------ccccce
Confidence            4799999864           68999999999999999999999999999999999999998888765      889999


Q ss_pred             EEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          125 VVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       125 ~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      ++++|+.+ +...++++++|.|+++|||||+|++|+|+|++++.+|+.++++|||||.|+|+||+.+|+++|++.+..++
T Consensus        85 ~~~~da~~-l~~~~~~~~~~~i~i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~TD~~~Y~~~~le~~~~~~  163 (204)
T d1yzha1          85 LLWVDGSD-LTDYFEDGEIDRLYLNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDNRGLFEYSLVSFSQYG  163 (204)
T ss_dssp             EEECCSSC-GGGTSCTTCCSEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHHT
T ss_pred             eeecCHHH-HhhhccCCceehhcccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEEEEECCccHHHHHHHHHHHCC
Confidence            99999985 55678999999999999999999999999999999999999999999999999999999999999998776


Q ss_pred             Cc-ccccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEE
Q 025470          205 MF-EALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFR  246 (252)
Q Consensus       205 ~~-~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~  246 (252)
                      .. .....+.+.++..   .++.|+||+++.+.|+.||++.|+
T Consensus       164 ~~~~~~~~~~~~~~~~---~~~~T~yE~k~~~~G~~Iy~l~~~  203 (204)
T d1yzha1         164 MKLNGVWLDLHASDFE---GNVMTEYEQKFSNKGQVIYRVEAE  203 (204)
T ss_dssp             CEEEEEESSGGGSCCC---CCCCCHHHHHTGGGCCCCEEEEEE
T ss_pred             cccccccccccccccC---CCCCCHHHHHHHHcCCCeEEEEEE
Confidence            53 2223233444332   257899999999999999999987

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.6e-42  Score=285.80  Aligned_cols=182  Identities=20%  Similarity=0.336  Sum_probs=161.5

Q ss_pred             CccccCCCCCCCCCccCCCCCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE
Q 025470           46 DYSLHYPHFFPPADQVNCSKKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV  125 (252)
Q Consensus        46 ~w~~~f~~~~~~~~~~~~~~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~  125 (252)
                      +|+++|++.           +|+|||||||+|.+++.+|+.+|+.+|+|||+++.++..|..++...      +++||++
T Consensus        21 ~w~~~F~~~-----------~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~------~l~Nv~~   83 (204)
T d2fcaa1          21 KWNTVFGND-----------NPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS------EAQNVKL   83 (204)
T ss_dssp             CHHHHHTSC-----------CCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS------CCSSEEE
T ss_pred             HHHHHcCCC-----------CceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHH------hccCchh
Confidence            799999864           68999999999999999999999999999999999999998877654      8899999


Q ss_pred             EeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          126 VRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       126 ~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      +++|+.. +...++++++|.|+++||+||+|++|+++|++++.+|++++++|||||.|+|+||+.+|+++|.+.+.+++.
T Consensus        84 ~~~Da~~-l~~~~~~~~~d~v~i~fp~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~TD~~~y~~~~~~~~~~~~~  162 (204)
T d2fcaa1          84 LNIDADT-LTDVFEPGEVKRVYLNFSDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDNRGLFEYSLKSFSEYGL  162 (204)
T ss_dssp             ECCCGGG-HHHHCCTTSCCEEEEESCCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESCHHHHHHHHHHHHHHTC
T ss_pred             cccchhh-hhcccCchhhhccccccccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEEECChHHHHHHHHHHHHCCC
Confidence            9999985 445688999999999999999999999999999999999999999999999999999999999999988876


Q ss_pred             cc-cccccccccCccccCCCCCCHHHHHHHHcCCCeEEEEEEec
Q 025470          206 FE-ALTKEELEADPVVKLLSSATEEGQKVARNGGQTFQAVFRRI  248 (252)
Q Consensus       206 ~~-~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k~  248 (252)
                      +. ..+.+.+...+.   ....|+||+++.++|++||++.|++.
T Consensus       163 ~~~~~~~d~~~~~~~---~~~~T~yE~k~~~~G~~iy~~~~~~~  203 (204)
T d2fcaa1         163 LLTYVSLDLHNSNLE---GNIMTEYEEKFSALGQPIYRAEVEWR  203 (204)
T ss_dssp             EEEEEESSGGGSSCT---TCCCCTTGGGSSSSSCCCEEEEEECC
T ss_pred             ccccCChhhcccCCC---CCCCCHHHHHHHHcCCCeEEEEEEEe
Confidence            53 333333433332   25789999999999999999999975

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=7.2e-19  Score=149.17  Aligned_cols=125  Identities=17%  Similarity=0.212  Sum_probs=108.5

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +.+|||+|||+|.++..||+. .|+..++++|+++++++.|++++...   ......|+.++++|+.+ .  .++++++|
T Consensus        97 G~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~---~~~~~~nv~~~~~d~~~-~--~~~~~~fD  170 (264)
T d1i9ga_          97 GARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC---YGQPPDNWRLVVSDLAD-S--ELPDGSVD  170 (264)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH---HTSCCTTEEEECSCGGG-C--CCCTTCEE
T ss_pred             CCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhh---ccCCCceEEEEeccccc-c--cccCCCcc
Confidence            569999999999999999998 78899999999999999999988764   12346799999999864 2  37789999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~  209 (252)
                      .|+++.|+||             .++..+.++|||||.+++-+.+-+....+.+.+.....|..+
T Consensus       171 aV~ldlp~P~-------------~~l~~~~~~LkpGG~lv~~~P~i~Qv~~~~~~l~~~~~f~~i  222 (264)
T d1i9ga_         171 RAVLDMLAPW-------------EVLDAVSRLLVAGGVLMVYVATVTQLSRIVEALRAKQCWTEP  222 (264)
T ss_dssp             EEEEESSCGG-------------GGHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHHSSBCCC
T ss_pred             eEEEecCCHH-------------HHHHHHHhccCCCCEEEEEeCccChHHHHHHHHHHcCCeecc
Confidence            9999999999             499999999999999999999999999999999755456443

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.78  E-value=1.7e-18  Score=145.82  Aligned_cols=118  Identities=11%  Similarity=0.138  Sum_probs=104.5

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +.+|||+|||+|.++..||+. .|...++++|+++++++.|++++...     ....|+.+..+|+.+    .+++.++|
T Consensus        86 G~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~-----~~~~nv~~~~~Di~~----~~~~~~fD  156 (250)
T d1yb2a1          86 GMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF-----YDIGNVRTSRSDIAD----FISDQMYD  156 (250)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-----SCCTTEEEECSCTTT----CCCSCCEE
T ss_pred             cCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-----cCCCceEEEEeeeec----ccccceee
Confidence            559999999999999999987 68889999999999999999988653     467899999999764    35578999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      .|+++.|+||             .++..+.++|||||+|++.+.+-+....+.+.+.++++
T Consensus       157 ~V~ld~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~gf  204 (250)
T d1yb2a1         157 AVIADIPDPW-------------NHVQKIASMMKPGSVATFYLPNFDQSEKTVLSLSASGM  204 (250)
T ss_dssp             EEEECCSCGG-------------GSHHHHHHTEEEEEEEEEEESSHHHHHHHHHHSGGGTE
T ss_pred             eeeecCCchH-------------HHHHHHHHhcCCCceEEEEeCCcChHHHHHHHHHHCCC
Confidence            9999999999             48999999999999999998888888889999988763

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.76  E-value=4.6e-18  Score=140.40  Aligned_cols=103  Identities=16%  Similarity=0.291  Sum_probs=84.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.++..+++..  ..++|+|+|+.|++.|++++...      +.+|+.|+++|+.+ ++  ++++++|.
T Consensus        16 ~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~~------~~~~i~~~~~d~~~-l~--~~~~~fD~   84 (231)
T d1vl5a_          16 NEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEGN------GHQQVEYVQGDAEQ-MP--FTDERFHI   84 (231)
T ss_dssp             CCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCC-C-CC--SCTTCEEE
T ss_pred             cCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhccccc------cccccccccccccc-cc--cccccccc
Confidence            5689999999999999999884  58999999999999998887664      78899999999874 65  77899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++...--|...        ...+++++.++|||||++++.+
T Consensus        85 v~~~~~l~~~~d--------~~~~l~~~~r~LkpgG~l~i~~  118 (231)
T d1vl5a_          85 VTCRIAAHHFPN--------PASFVSEAYRVLKKGGQLLLVD  118 (231)
T ss_dssp             EEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ccccccccccCC--------HHHHHHHHHHhcCCCcEEEEEe
Confidence            998653322211        1259999999999999999865

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.75  E-value=3.7e-18  Score=141.89  Aligned_cols=103  Identities=18%  Similarity=0.294  Sum_probs=86.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+..  .+++|||+|+.|++.|++++...      +++|+.++++|+.+ ++  ++++++|.
T Consensus        17 ~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~~~------~~~~~~~~~~d~~~-~~--~~~~~fD~   85 (234)
T d1xxla_          17 EHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQEK------GVENVRFQQGTAES-LP--FPDDSFDI   85 (234)
T ss_dssp             TCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHH------TCCSEEEEECBTTB-CC--SCTTCEEE
T ss_pred             CCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhccc------cccccccccccccc-cc--ccccccce
Confidence            5589999999999999999985  58999999999999999887664      77899999999874 65  78999999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++.+.-.|....        ..+++++.++|||||.+++..
T Consensus        86 v~~~~~l~~~~d~--------~~~l~~~~r~LkpgG~~~~~~  119 (234)
T d1xxla_          86 ITCRYAAHHFSDV--------RKAVREVARVLKQDGRFLLVD  119 (234)
T ss_dssp             EEEESCGGGCSCH--------HHHHHHHHHHEEEEEEEEEEE
T ss_pred             eeeeceeecccCH--------HHHHHHHHHeeCCCcEEEEEE
Confidence            9987654443221        269999999999999998853

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.71  E-value=8.8e-17  Score=136.56  Aligned_cols=117  Identities=17%  Similarity=0.259  Sum_probs=102.8

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||+|||+|.++..||+. .|...++|+|+++++++.|++++...     .-..++.+...|+..    .++...+|
T Consensus       104 G~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~-----g~~~~v~~~~~d~~~----~~~~~~~D  174 (266)
T d1o54a_         104 GDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW-----GLIERVTIKVRDISE----GFDEKDVD  174 (266)
T ss_dssp             TCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-----TCGGGEEEECCCGGG----CCSCCSEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh-----ccccCcEEEeccccc----ccccccee
Confidence            569999999999999999998 47889999999999999999988764     224789998888643    35578899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      .|++..|+||             .+++.+.++|||||+|++.+..-+..+.+.+.+.+++
T Consensus       175 ~V~~d~p~p~-------------~~l~~~~~~LKpGG~lv~~~P~~~Qv~~~~~~l~~~g  221 (266)
T d1o54a_         175 ALFLDVPDPW-------------NYIDKCWEALKGGGRFATVCPTTNQVQETLKKLQELP  221 (266)
T ss_dssp             EEEECCSCGG-------------GTHHHHHHHEEEEEEEEEEESSHHHHHHHHHHHHHSS
T ss_pred             eeEecCCCHH-------------HHHHHHHhhcCCCCEEEEEeCcccHHHHHHHHHHHCC
Confidence            9999999999             4999999999999999999999889999999998876

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.3e-17  Score=141.00  Aligned_cols=131  Identities=15%  Similarity=0.100  Sum_probs=103.8

Q ss_pred             CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhc-----CCCCcccEEEEeCCcccccCccC
Q 025470           65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVS-----NPGQYQNISVVRTNSMKYIPNYF  138 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~-----~~~~~~nv~~~~~da~~~l~~~~  138 (252)
                      ++..|||+|||+|.++..||+. .|+..++++|+++++++.|++++......     ......|+.+.++|+.. ....+
T Consensus        98 pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~-~~~~~  176 (324)
T d2b25a1          98 PGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISG-ATEDI  176 (324)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTC-CC---
T ss_pred             CCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhh-ccccc
Confidence            3569999999999999999998 68889999999999999999998765321     12345799999999864 32345


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC-Ccccc
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP-MFEAL  209 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~-~~~~~  209 (252)
                      ++.++|.|++..|+||             .++.++.++|||||+|++-+.+-+....+.+.++.+. .|..+
T Consensus       177 ~~~~fD~V~LD~p~P~-------------~~l~~~~~~LKpGG~lv~~~P~i~Qv~~~~~~l~~~~~~f~~i  235 (324)
T d2b25a1         177 KSLTFDAVALDMLNPH-------------VTLPVFYPHLKHGGVCAVYVVNITQVIELLDGIRTCELALSCE  235 (324)
T ss_dssp             ----EEEEEECSSSTT-------------TTHHHHGGGEEEEEEEEEEESSHHHHHHHHHHHHHHTCCEEEE
T ss_pred             CCCCcceEeecCcCHH-------------HHHHHHHHhccCCCEEEEEeCCHHHHHHHHHHHHHcCCCceee
Confidence            6788999999999999             4899999999999999999999888888999887543 25433

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=1.6e-17  Score=141.28  Aligned_cols=106  Identities=21%  Similarity=0.381  Sum_probs=88.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++..|+..++|||+|+.|++.|+++           .+|+.++++|+. .++  ++++++|.
T Consensus        85 ~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~-----------~~~~~~~~~d~~-~l~--~~~~sfD~  150 (268)
T d1p91a_          85 ATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-----------YPQVTFCVASSH-RLP--FSDTSMDA  150 (268)
T ss_dssp             CCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-----------CTTSEEEECCTT-SCS--BCTTCEEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhcc-----------cccccceeeehh-hcc--CCCCCEEE
Confidence            5689999999999999999999999999999999999887642           458999999987 465  78999999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      |+..+. |.              .++++.|+|||||.+++.+.+.+....+.+.+
T Consensus       151 v~~~~~-~~--------------~~~e~~rvLkpgG~l~~~~p~~~~l~el~~~~  190 (268)
T d1p91a_         151 IIRIYA-PC--------------KAEELARVVKPGGWVITATPGPRHLMELKGLI  190 (268)
T ss_dssp             EEEESC-CC--------------CHHHHHHHEEEEEEEEEEEECTTTTHHHHTTT
T ss_pred             EeecCC-HH--------------HHHHHHHHhCCCcEEEEEeeCCcchHHHHHHh
Confidence            998763 22              36789999999999999998776655555443

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.69  E-value=1.8e-16  Score=127.51  Aligned_cols=118  Identities=14%  Similarity=0.153  Sum_probs=95.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +.+|||||||+|.+++.+|+..  ..++|+|+++.+++.|+++++..      ++ +|+.++++|+.+.+   ....++|
T Consensus        34 g~~VLDiGcGsG~~s~~lA~~~--~~V~avD~~~~~l~~a~~n~~~~------gl~~~v~~~~gda~~~~---~~~~~~D  102 (186)
T d1l3ia_          34 NDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQRH------GLGDNVTLMEGDAPEAL---CKIPDID  102 (186)
T ss_dssp             TCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHHHT------TCCTTEEEEESCHHHHH---TTSCCEE
T ss_pred             CCEEEEEECCeEcccccccccc--eEEEEecCCHHHHHHHHHHHHHc------CCCcceEEEECchhhcc---cccCCcC
Confidence            5699999999999999999874  58999999999999999998764      56 59999999987543   3457899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~  205 (252)
                      .|+++.+...           ...+++.+.+.|||||++++..-..+-...+.+.+...++
T Consensus       103 ~v~~~~~~~~-----------~~~~~~~~~~~LkpgG~lvi~~~~~e~~~~~~~~l~~~~~  152 (186)
T d1l3ia_         103 IAVVGGSGGE-----------LQEILRIIKDKLKPGGRIIVTAILLETKFEAMECLRDLGF  152 (186)
T ss_dssp             EEEESCCTTC-----------HHHHHHHHHHTEEEEEEEEEEECBHHHHHHHHHHHHHTTC
T ss_pred             EEEEeCcccc-----------chHHHHHHHHHhCcCCEEEEEeeccccHHHHHHHHHHcCC
Confidence            9998764322           1369999999999999999877666666666777766543

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=9.7e-17  Score=134.15  Aligned_cols=103  Identities=15%  Similarity=0.129  Sum_probs=83.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||||||+|.++..+|+..+ +.++|||+|+.|++.|+++....      ++. +|.|+.+|+.. +   ++++++|
T Consensus        34 g~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~~~------gl~~~v~~~~~d~~~-~---~~~~~fD  102 (245)
T d1nkva_          34 GTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAEEL------GVSERVHFIHNDAAG-Y---VANEKCD  102 (245)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEESCCTT-C---CCSSCEE
T ss_pred             CCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHHHh------hccccchhhhhHHhh-c---cccCcee
Confidence            56899999999999999998864 78999999999999998877653      554 59999999864 2   4578999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|++....-|...        ...+++++.++|||||++++..
T Consensus       103 ~v~~~~~~~~~~d--------~~~~l~~~~r~LkPGG~l~i~~  137 (245)
T d1nkva_         103 VAACVGATWIAGG--------FAGAEELLAQSLKPGGIMLIGE  137 (245)
T ss_dssp             EEEEESCGGGTSS--------SHHHHHHHTTSEEEEEEEEEEE
T ss_pred             EEEEEehhhccCC--------HHHHHHHHHHHcCcCcEEEEEe
Confidence            9997654333221        1369999999999999999864

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.68  E-value=9.3e-17  Score=131.45  Aligned_cols=106  Identities=18%  Similarity=0.338  Sum_probs=83.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|+.  +..++|+|+|+.|++.|++++...      + .++.++.+|+.. ++  ++++++|.
T Consensus        38 ~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~~~------~-~~~~~~~~d~~~-l~--~~~~~fD~  105 (226)
T d1ve3a1          38 RGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAKSR------E-SNVEFIVGDARK-LS--FEDKTFDY  105 (226)
T ss_dssp             CCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------T-CCCEEEECCTTS-CC--SCTTCEEE
T ss_pred             CCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhccc------c-cccccccccccc-cc--ccCcCceE
Confidence            458999999999999999987  568999999999999998876543      2 467889999874 54  77899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++...-.|.....      ...+|+++.++|||||.+++.+.+
T Consensus       106 I~~~~~l~~~~~~d------~~~~l~~i~~~LkpgG~lii~~~~  143 (226)
T d1ve3a1         106 VIFIDSIVHFEPLE------LNQVFKEVRRVLKPSGKFIMYFTD  143 (226)
T ss_dssp             EEEESCGGGCCHHH------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             EEEecchhhCChhH------HHHHHHHHHHHcCcCcEEEEEEcC
Confidence            99876544421100      125899999999999999887644

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.68  E-value=1e-16  Score=136.76  Aligned_cols=104  Identities=20%  Similarity=0.212  Sum_probs=84.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...|||||||+|.++..||++. ++.++|||+|+.+++.|+++....      ++ +|+.|+++|+.+ ++  ++++++|
T Consensus        68 ~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~~~------gl~~~v~~~~~d~~~-l~--~~~~sfD  137 (282)
T d2o57a1          68 QAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQA------GLADNITVKYGSFLE-IP--CEDNSYD  137 (282)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHH------TCTTTEEEEECCTTS-CS--SCTTCEE
T ss_pred             CCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccccc------ccccccccccccccc-cc--ccccccc
Confidence            5699999999999999999875 678999999999999999887665      55 489999999874 54  7789999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+....--+...        ...+++++.++|||||+|++..
T Consensus       138 ~V~~~~~l~h~~d--------~~~~l~~~~~~LkpgG~l~~~~  172 (282)
T d2o57a1         138 FIWSQDAFLHSPD--------KLKVFQECARVLKPRGVMAITD  172 (282)
T ss_dssp             EEEEESCGGGCSC--------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hhhccchhhhccC--------HHHHHHHHHHhcCCCcEEEEEE
Confidence            9987543222111        1259999999999999998864

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.66  E-value=5.6e-16  Score=127.82  Aligned_cols=165  Identities=15%  Similarity=0.188  Sum_probs=104.2

Q ss_pred             CceEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +..|||||||+|.++..|++.  .|+.+++|||+|+.|++.|++++...     ....++.+..+|+.+     ++....
T Consensus        40 ~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~-----~~~~~~~~~~~d~~~-----~~~~~~  109 (225)
T d1im8a_          40 DSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY-----HSEIPVEILCNDIRH-----VEIKNA  109 (225)
T ss_dssp             TCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS-----CCSSCEEEECSCTTT-----CCCCSE
T ss_pred             CCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh-----cccchhhhccchhhc-----cccccc
Confidence            458999999999999999986  47899999999999999999877543     345578888888753     334567


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe----CchHHHHHHHH---HHhcCCCcccccccc-cc
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT----DVEELGDWMRS---CLENHPMFEALTKEE-LE  215 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t----d~~~~~~~~~~---~~~~~~~~~~~~~~~-~~  215 (252)
                      |.|++++-..|....      -...+|++++++|||||.+++..    +..........   .+.....+....... ..
T Consensus       110 d~i~~~~~l~~~~~~------d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (225)
T d1im8a_         110 SMVILNFTLQFLPPE------DRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFKRANGYSELEVSQKRT  183 (225)
T ss_dssp             EEEEEESCGGGSCGG------GHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHTTGGGSTTHHHHH
T ss_pred             eeeEEeeeccccChh------hHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            888776644332110      01269999999999999999863    22222221111   121111122111100 00


Q ss_pred             c-CccccCCCCCCHHHHHHHHcCCCeEEEEEEe
Q 025470          216 A-DPVVKLLSSATEEGQKVARNGGQTFQAVFRR  247 (252)
Q Consensus       216 ~-~p~~~~~~~~t~~e~~~~~~G~~i~~~~~~k  247 (252)
                      . +... .....-+++....+.|.+...+.|+.
T Consensus       184 ~~~~~~-~~~s~~~~~~~L~~aGF~~v~~~~~~  215 (225)
T d1im8a_         184 ALENVM-RTDSIETHKVRLKNVGFSQVELWFQC  215 (225)
T ss_dssp             HHHHHC-CCCCHHHHHHHHHHHTCSEEEEEEEE
T ss_pred             Hhhccc-CCCCHHHHHHHHHHcCCCceEEeeee
Confidence            0 0000 01233367778889999987777764

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.63  E-value=2.1e-15  Score=123.65  Aligned_cols=104  Identities=14%  Similarity=0.109  Sum_probs=80.6

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~  143 (252)
                      ++..|||||||+|..+..+|+..|+..|+|||+|+.|++.|.+++..        .+|+.++.+|+.. .... .....+
T Consensus        56 pg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~--------~~ni~~i~~d~~~-~~~~~~~~~~v  126 (209)
T d1nt2a_          56 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRE--------RNNIIPLLFDASK-PWKYSGIVEKV  126 (209)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHH--------CSSEEEECSCTTC-GGGTTTTCCCE
T ss_pred             CCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhc--------cCCceEEEeeccC-ccccccccceE
Confidence            36699999999999999999999988999999999999999876543        3599999999864 3221 122345


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+..++.++.          ...+++++.++|||||.+++..
T Consensus       127 d~v~~~~~~~~~----------~~~~l~~~~~~LkpgG~l~i~~  160 (209)
T d1nt2a_         127 DLIYQDIAQKNQ----------IEILKANAEFFLKEKGEVVIMV  160 (209)
T ss_dssp             EEEEECCCSTTH----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEecccChhh----------HHHHHHHHHHHhccCCeEEEEE
Confidence            555555544442          2359999999999999998864

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.63  E-value=1e-15  Score=128.41  Aligned_cols=116  Identities=13%  Similarity=0.050  Sum_probs=86.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|..+..+++.. ..+++|||+|+.|++.|+++....     ....++.|+++|+.. .+ ....+++|.
T Consensus        25 ~~~VLDlGCG~G~~~~~~~~~~-~~~v~GiD~S~~~l~~A~~r~~~~-----~~~~~v~f~~~D~~~-~~-~~~~~~fD~   96 (252)
T d1ri5a_          25 GDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRARNM-----KRRFKVFFRAQDSYG-RH-MDLGKEFDV   96 (252)
T ss_dssp             TCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHHTS-----CCSSEEEEEESCTTT-SC-CCCSSCEEE
T ss_pred             cCEEEEecccCcHHHHHHHHcC-CCeEEEecCCHHHHHHHHHHHHhc-----CCCcceEEEEcchhh-hc-ccccccceE
Confidence            5689999999999999999884 347999999999999998876543     234589999999852 22 224678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELG  193 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~  193 (252)
                      |++++.--|.-....    ....+++++.++|||||.|++.+.+.+..
T Consensus        97 V~~~~~l~~~~~~~~----~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i  140 (252)
T d1ri5a_          97 ISSQFSFHYAFSTSE----SLDIAQRNIARHLRPGGYFIMTVPSRDVI  140 (252)
T ss_dssp             EEEESCGGGGGSSHH----HHHHHHHHHHHTEEEEEEEEEEEECHHHH
T ss_pred             EEEcceeeecCCCHH----HHHHHHHHHhceeCCCCEEEEEecCHHHH
Confidence            998875433211000    01259999999999999999988765443

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.62  E-value=1.1e-15  Score=127.39  Aligned_cols=105  Identities=19%  Similarity=0.341  Sum_probs=81.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..|++.  +.+++|||+|+.|++.|++++...      + .++.++++|+.+ ++  + ++.+|.
T Consensus        42 ~~~iLDiGcGtG~~~~~l~~~--~~~v~gvD~s~~mi~~a~~~~~~~------~-~~i~~~~~d~~~-l~--~-~~~fD~  108 (251)
T d1wzna1          42 VRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAKER------N-LKIEFLQGDVLE-IA--F-KNEFDA  108 (251)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHT------T-CCCEEEESCGGG-CC--C-CSCEEE
T ss_pred             CCEEEEeCCCCCccchhhccc--ceEEEEEeeccccccccccccccc------c-ccchheehhhhh-cc--c-ccccch
Confidence            447999999999999999998  468999999999999999887652      3 379999999874 54  3 468999


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++.+.. .+....      -...+|++++++|||||.+++...+
T Consensus       109 I~~~~~~~~~~~~~------~~~~~L~~~~~~LkpgG~lii~~~~  147 (251)
T d1wzna1         109 VTMFFSTIMYFDEE------DLRKLFSKVAEALKPGGVFITDFPC  147 (251)
T ss_dssp             EEECSSGGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             HhhhhhhhhcCChH------HHHHHHHHHHHHcCCCcEEEEEecc
Confidence            9876421 111000      0125999999999999999997655

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=8.2e-16  Score=129.62  Aligned_cols=116  Identities=14%  Similarity=0.108  Sum_probs=90.0

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..|||+|||+|.+++.+++.  +..++|+|+|+.|++.|++++...      ++ +++++++|+...    ++.+++|
T Consensus       120 ~g~~VLDiGcGsG~l~i~aa~~--g~~V~gvDis~~av~~A~~na~~n------~~-~~~~~~~d~~~~----~~~~~fD  186 (254)
T d2nxca1         120 PGDKVLDLGTGSGVLAIAAEKL--GGKALGVDIDPMVLPQAEANAKRN------GV-RPRFLEGSLEAA----LPFGPFD  186 (254)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCGGGHHHHHHHHHHT------TC-CCEEEESCHHHH----GGGCCEE
T ss_pred             ccCEEEEcccchhHHHHHHHhc--CCEEEEEECChHHHHHHHHHHHHc------CC-ceeEEecccccc----ccccccc
Confidence            3569999999999999988876  568999999999999999987653      55 467889997642    4467999


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHP  204 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~  204 (252)
                      .|+.|+..+.           ...++..+.++|||||+|+++--..+..+.+.+.+..++
T Consensus       187 ~V~ani~~~~-----------l~~l~~~~~~~LkpGG~lilSgil~~~~~~v~~~~~~~G  235 (254)
T d2nxca1         187 LLVANLYAEL-----------HAALAPRYREALVPGGRALLTGILKDRAPLVREAMAGAG  235 (254)
T ss_dssp             EEEEECCHHH-----------HHHHHHHHHHHEEEEEEEEEEEEEGGGHHHHHHHHHHTT
T ss_pred             hhhhcccccc-----------HHHHHHHHHHhcCCCcEEEEEecchhhHHHHHHHHHHCC
Confidence            9999864322           135889999999999999985333445566777777665

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.61  E-value=1.6e-15  Score=122.70  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=82.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|..+..+|++  +..++|||+|+.|++.|+++...      .+++|+.+...|+.. +   .+++++|.|
T Consensus        32 grvLDiGcG~G~~~~~la~~--g~~v~gvD~s~~~l~~a~~~~~~------~~~~~~~~~~~d~~~-~---~~~~~fD~I   99 (198)
T d2i6ga1          32 GRTLDLGCGNGRNSLYLAAN--GYDVTAWDKNPASMANLERIKAA------EGLDNLQTDLVDLNT-L---TFDGEYDFI   99 (198)
T ss_dssp             CEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHH------TTCTTEEEEECCTTT-C---CCCCCEEEE
T ss_pred             CcEEEECCCCCHHHHHHHHH--hhhhccccCcHHHHHHHHHHhhh------ccccchhhhheeccc-c---cccccccEE
Confidence            37999999999999999998  56899999999999999887655      378899999999763 3   236899999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +.+..-.+...      .-...+++++.++|+|||.+++.+-
T Consensus       100 ~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~~~~~~~  135 (198)
T d2i6ga1         100 LSTVVMMFLEA------QTIPGLIANMQRCTKPGGYNLIVAA  135 (198)
T ss_dssp             EEESCGGGSCT------THHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             EEeeeeecCCH------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            98764322110      0123699999999999999999763

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.61  E-value=2e-15  Score=124.83  Aligned_cols=95  Identities=20%  Similarity=0.287  Sum_probs=76.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++.  +..++|||+|+.|++.|+++.          ..+  ++.+|+.+ ++  ++++++|.
T Consensus        43 ~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~----------~~~--~~~~~~~~-l~--~~~~~fD~  105 (246)
T d2avna1          43 PCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG----------VKN--VVEAKAED-LP--FPSGAFEA  105 (246)
T ss_dssp             CCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT----------CSC--EEECCTTS-CC--SCTTCEEE
T ss_pred             CCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc----------ccc--cccccccc-cc--cccccccc
Confidence            348999999999999999987  678999999999999887642          222  56788864 54  67899999


Q ss_pred             EEEeC------CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          146 MFFLF------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       146 i~~~f------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      |++.+      |||.             .+|+++.++|||||.+++.+.+.
T Consensus       106 ii~~~~~~~~~~d~~-------------~~l~~i~r~Lk~gG~~ii~~~~~  143 (246)
T d2avna1         106 VLALGDVLSYVENKD-------------KAFSEIRRVLVPDGLLIATVDNF  143 (246)
T ss_dssp             EEECSSHHHHCSCHH-------------HHHHHHHHHEEEEEEEEEEEEBH
T ss_pred             eeeecchhhhhhhHH-------------HHHHHHHhhcCcCcEEEEEECCH
Confidence            98643      3432             59999999999999999988653

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.61  E-value=3.4e-15  Score=120.61  Aligned_cols=118  Identities=17%  Similarity=0.225  Sum_probs=87.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.+++.+|...+  +++|+|+|+.+++.|++++...    .....++.++.+|..+    .++++++|.
T Consensus        53 ~~~VLDiGcG~G~~~~~la~~~~--~v~~iD~s~~~i~~a~~n~~~~----~l~~~~i~~~~~d~~~----~~~~~~fD~  122 (194)
T d1dusa_          53 DDDILDLGCGYGVIGIALADEVK--STTMADINRRAIKLAKENIKLN----NLDNYDIRVVHSDLYE----NVKDRKYNK  122 (194)
T ss_dssp             TCEEEEETCTTSHHHHHHGGGSS--EEEEEESCHHHHHHHHHHHHHT----TCTTSCEEEEECSTTT----TCTTSCEEE
T ss_pred             CCeEEEEeecCChhHHHHHhhcc--ccceeeeccccchhHHHHHHHh----CCccceEEEEEcchhh----hhccCCceE
Confidence            55899999999999999998855  7999999999999999887653    1123458999999753    355789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHH
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCL  200 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~  200 (252)
                      |+++.|-.+.+       -....+++.+.++|+|||.+++..........+...+
T Consensus       123 Ii~~~p~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~~l  170 (194)
T d1dusa_         123 IITNPPIRAGK-------EVLHRIIEEGKELLKDNGEIWVVIQTKQGAKSLAKYM  170 (194)
T ss_dssp             EEECCCSTTCH-------HHHHHHHHHHHHHEEEEEEEEEEEESTHHHHHHHHHH
T ss_pred             EEEcccEEecc-------hhhhhHHHHHHHhcCcCcEEEEEEeCcCCHHHHHHHH
Confidence            99876532211       1123689999999999999988765544444443333

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.1e-15  Score=125.94  Aligned_cols=106  Identities=12%  Similarity=0.055  Sum_probs=83.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..++...+ ..++|||+|+.|++.|++++..      .+.+|+.|+++|+.+ ++  ++++++|.
T Consensus        61 ~~~vLDiGcG~G~~~~~l~~~~~-~~v~~vD~s~~~l~~ak~~~~~------~~~~~~~f~~~d~~~-~~--~~~~~fD~  130 (222)
T d2ex4a1          61 TSCALDCGAGIGRITKRLLLPLF-REVDMVDITEDFLVQAKTYLGE------EGKRVRNYFCCGLQD-FT--PEPDSYDV  130 (222)
T ss_dssp             CSEEEEETCTTTHHHHHTTTTTC-SEEEEEESCHHHHHHHHHHTGG------GGGGEEEEEECCGGG-CC--CCSSCEEE
T ss_pred             CCEEEEeccCCCHhhHHHHHhcC-CEEEEeecCHHHhhcccccccc------ccccccccccccccc-cc--cccccccc
Confidence            45899999999999999887764 4799999999999999887644      267899999999874 54  56889999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++.+.-.+....      ....++++++++|||||.|++..
T Consensus       131 I~~~~~l~h~~~~------~~~~~l~~i~~~Lk~~G~~~i~~  166 (222)
T d2ex4a1         131 IWIQWVIGHLTDQ------HLAEFLRRCKGSLRPNGIIVIKD  166 (222)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             cccccccccchhh------hhhhHHHHHHHhcCCcceEEEEE
Confidence            9987643222110      01259999999999999999864

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.59  E-value=1.9e-15  Score=126.09  Aligned_cols=108  Identities=10%  Similarity=0.118  Sum_probs=81.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+|++.  ..++|||+|+.|++.|++++...      + .|+.++++|+.. ++  + ++++|.
T Consensus        38 ~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~~~------~-~~v~~~~~d~~~-~~--~-~~~fD~  104 (246)
T d1y8ca_          38 FDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFRSQ------G-LKPRLACQDISN-LN--I-NRKFDL  104 (246)
T ss_dssp             TTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHHHT------T-CCCEEECCCGGG-CC--C-SCCEEE
T ss_pred             CCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccccc------C-ccceeeccchhh-hc--c-cccccc
Confidence            3479999999999999999984  57999999999999999877542      3 379999999874 43  2 568999


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      |++.+.. .+...     .--...+++.+++.|+|||.|++...+..
T Consensus       105 i~~~~~~~~~~~~-----~~~~~~~l~~~~~~LkpgG~~i~~~~~~~  146 (246)
T d1y8ca_         105 ITCCLDSTNYIID-----SDDLKKYFKAVSNHLKEGGVFIFDINSYY  146 (246)
T ss_dssp             EEECTTGGGGCCS-----HHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred             cceeeeeeeccCC-----HHHHHHHHHHHHHhCCCCeEEEEEeCCHH
Confidence            9875421 11100     00112599999999999999998665443

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.59  E-value=7.6e-15  Score=124.77  Aligned_cols=132  Identities=14%  Similarity=0.210  Sum_probs=99.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|..++.+|...|+..++|+|+|+.+++.|++|+...      ++.||.|+++|..+.    ++...+|.
T Consensus       109 ~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~------~~~~v~~~~~d~~~~----~~~~~fDl  178 (274)
T d2b3ta1         109 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL------AIKNIHILQSDWFSA----LAGQQFAM  178 (274)
T ss_dssp             CCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH------TCCSEEEECCSTTGG----GTTCCEEE
T ss_pred             ccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh------Ccccceeeecccccc----cCCCceeE
Confidence            45799999999999999999999999999999999999999998776      778999999997543    44678999


Q ss_pred             EEEeCCC---C-c----ccccccccc---------ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCccc
Q 025470          146 MFFLFPD---P-H----FKEKNHRRR---------VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEA  208 (252)
Q Consensus       146 i~~~fpd---P-~----~k~~h~krr---------~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~  208 (252)
                      |+.|.|=   . +    ...++..+.         .+...++....+.|+|||.+++.... +....+.+.+...+ |..
T Consensus       179 IvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~lEig~-~q~~~v~~~l~~~g-f~~  256 (274)
T d2b3ta1         179 IVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHGW-QQGEAVRQAFILAG-YHD  256 (274)
T ss_dssp             EEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECCS-SCHHHHHHHHHHTT-CTT
T ss_pred             EEecchhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEEEECc-hHHHHHHHHHHHCC-CCe
Confidence            9999651   0 0    001122111         12345889999999999999998754 33455666666665 443


Q ss_pred             c
Q 025470          209 L  209 (252)
Q Consensus       209 ~  209 (252)
                      +
T Consensus       257 i  257 (274)
T d2b3ta1         257 V  257 (274)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.59  E-value=6.3e-15  Score=122.42  Aligned_cols=126  Identities=12%  Similarity=0.111  Sum_probs=89.0

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..|||||||+|.++..+|+..|+..|+|||+|+.|++.+.+++        ...+|+.++.+|+....  ...+...|
T Consensus        74 pG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a--------~~~~ni~~i~~d~~~~~--~~~~~~~~  143 (230)
T d1g8sa_          74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC--------AERENIIPILGDANKPQ--EYANIVEK  143 (230)
T ss_dssp             TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT--------TTCTTEEEEECCTTCGG--GGTTTCCC
T ss_pred             CCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH--------hhhcccceEEEeeccCc--ccccccce
Confidence            467999999999999999999999999999999999999887653        24578999999987432  23344555


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe---------CchHHHHHHHHHHhcCCCcccc
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT---------DVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t---------d~~~~~~~~~~~~~~~~~~~~~  209 (252)
                      .++++.-..++..        ...++.++.+.|||||.+++..         +....++...+.+.+.+ |+.+
T Consensus       144 v~~i~~~~~~~~~--------~~~~l~~~~r~LKpgG~~~i~~k~~~~d~~~~~~~~~~e~~~~L~~aG-F~iv  208 (230)
T d1g8sa_         144 VDVIYEDVAQPNQ--------AEILIKNAKWFLKKGGYGMIAIKARSIDVTKDPKEIFKEQKEILEAGG-FKIV  208 (230)
T ss_dssp             EEEEEECCCSTTH--------HHHHHHHHHHHEEEEEEEEEEEEGGGTCSSSCHHHHHHHHHHHHHHHT-EEEE
T ss_pred             eEEeeccccchHH--------HHHHHHHHHHhcccCceEEEEeeccccCCCCCHHHHHHHHHHHHHHcC-CEEE
Confidence            5444322222211        1358999999999999998862         22344555556665554 4443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-15  Score=126.17  Aligned_cols=109  Identities=9%  Similarity=0.040  Sum_probs=83.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.++..+|+..+ ..++|||+|+.+++.|+++...       ...++.++..|+.. +...++++++|.
T Consensus        54 g~~VLdIGcG~G~~a~~~a~~~~-~~v~~id~s~~~~~~a~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~fD~  124 (229)
T d1zx0a1          54 GGRVLEVGFGMAIAASKVQEAPI-DEHWIIECNDGVFQRLRDWAPR-------QTHKVIPLKGLWED-VAPTLPDGHFDG  124 (229)
T ss_dssp             CEEEEEECCTTSHHHHHHHTSCE-EEEEEEECCHHHHHHHHHHGGG-------CSSEEEEEESCHHH-HGGGSCTTCEEE
T ss_pred             CCeEEEeeccchHHHHHHHHcCC-CeEEEeCCCHHHHHHHHHHhhh-------cccccccccccccc-cccccccccccc
Confidence            55899999999999999998754 5799999999999999876532       34578888999874 434577899999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |++......   .+..+......+++++.++|||||+|.+.
T Consensus       125 i~fD~~~~~---~~~~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         125 ILYDTYPLS---EETWHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             EEECCCCCB---GGGTTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             eeecccccc---cccccccCHHHHHHHHHHHcCCCcEEEEE
Confidence            986433222   22222333456999999999999999874

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.56  E-value=5.7e-15  Score=121.28  Aligned_cols=100  Identities=19%  Similarity=0.209  Sum_probs=82.4

Q ss_pred             CCceEEEEcCcccHHHHHHHHHC-CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLF-PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~-p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..|||||||+|.++..+|+.. +...++++|+++.+++.|++++...      ++.|+.++++|+.+.   .+.++++
T Consensus        75 ~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~------~~~n~~~~~~d~~~~---~~~~~~f  145 (213)
T d1dl5a1          75 KGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL------GIENVIFVCGDGYYG---VPEFSPY  145 (213)
T ss_dssp             TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGC---CGGGCCE
T ss_pred             ccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhh------cccccccccCchHHc---cccccch
Confidence            36699999999999999999974 6789999999999999999988664      789999999998642   2446789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|++...-++              +.+.+.+.|||||++++..
T Consensus       146 D~I~~~~~~~~--------------~p~~l~~~LkpGG~lv~pv  175 (213)
T d1dl5a1         146 DVIFVTVGVDE--------------VPETWFTQLKEGGRVIVPI  175 (213)
T ss_dssp             EEEEECSBBSC--------------CCHHHHHHEEEEEEEEEEB
T ss_pred             hhhhhhccHHH--------------hHHHHHHhcCCCcEEEEEE
Confidence            99999764333              3346778899999998854

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.56  E-value=1.1e-14  Score=120.00  Aligned_cols=150  Identities=13%  Similarity=0.109  Sum_probs=96.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++..  ..++|||+|+.+++.|+++.          ..|+.++++|+.. +.   .++++|.|
T Consensus        22 ~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~----------~~~~~~~~~~~~~-~~---~~~~fD~I   85 (225)
T d2p7ia1          22 GNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRL----------KDGITYIHSRFED-AQ---LPRRYDNI   85 (225)
T ss_dssp             SCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHS----------CSCEEEEESCGGG-CC---CSSCEEEE
T ss_pred             CcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhccc----------ccccccccccccc-cc---cccccccc
Confidence            479999999999999999884  57999999999999887542          2479999999863 32   36799999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHH-HhhcCCcEEEEEeCchHHHHHHHHHHhcC-CCcccccccccccCccccCCC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYA-YVLGVGGIIYTITDVEELGDWMRSCLENH-PMFEALTKEELEADPVVKLLS  224 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~-~~LkpgG~l~~~td~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~  224 (252)
                      ++...-.|...        ...++.++. ++|+|||.+++.+.+.............. ......+..+....  +....
T Consensus        86 ~~~~vleh~~d--------~~~~l~~i~~~~Lk~gG~l~i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~~  155 (225)
T d2p7ia1          86 VLTHVLEHIDD--------PVALLKRINDDWLAEGGRLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHG--HRCTY  155 (225)
T ss_dssp             EEESCGGGCSS--------HHHHHHHHHHTTEEEEEEEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTT--CCCCC
T ss_pred             cccceeEecCC--------HHHHHHHHHHHhcCCCceEEEEeCCcccHHHHHHHHhhhhhhhhhcCcccccee--eeecc
Confidence            87643222111        125888887 78999999999886644322222221111 11111111111111  11113


Q ss_pred             CCCHHHHHHHHcCCCeEE
Q 025470          225 SATEEGQKVARNGGQTFQ  242 (252)
Q Consensus       225 ~~t~~e~~~~~~G~~i~~  242 (252)
                      .....++...+.|.+|-.
T Consensus       156 ~~~~l~~~l~~~Gf~i~~  173 (225)
T d2p7ia1         156 ALDTLERDASRAGLQVTY  173 (225)
T ss_dssp             CHHHHHHHHHHTTCEEEE
T ss_pred             CHHHHHHHHHHCCCEEEE
Confidence            334678888999998754

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.54  E-value=2.9e-14  Score=122.29  Aligned_cols=107  Identities=16%  Similarity=0.174  Sum_probs=81.1

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..|||||||.|.++..+|+.+ ++.++||++|++.++.|++++...      ++ ..+.+...|..      +.++++
T Consensus        61 ~G~~VLDiGCG~G~~~~~~a~~~-g~~v~git~s~~q~~~a~~~~~~~------~l~~~v~~~~~d~~------~~~~~f  127 (291)
T d1kpia_          61 PGMTLLDIGCGWGSTMRHAVAEY-DVNVIGLTLSENQYAHDKAMFDEV------DSPRRKEVRIQGWE------EFDEPV  127 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHS------CCSSCEEEEECCGG------GCCCCC
T ss_pred             CCCEEEEecCcchHHHHHHHHhc-CcceeeccchHHHHHHHHHHHHhh------ccchhhhhhhhccc------cccccc
Confidence            36699999999999999999987 479999999999999999887654      44 45788777753      336789


Q ss_pred             cEEEEe-----CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          144 TKMFFL-----FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       144 d~i~~~-----fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |.|+..     ++++-.-. +   .--.+.+++.+.++|||||++++.+-
T Consensus       128 D~i~sie~~eH~~~~~~~~-~---~~~~~~~f~~i~~~LkpgG~~~l~~i  173 (291)
T d1kpia_         128 DRIVSLGAFEHFADGAGDA-G---FERYDTFFKKFYNLTPDDGRMLLHTI  173 (291)
T ss_dssp             SEEEEESCGGGTTCCSSCC-S---TTHHHHHHHHHHHTSCTTCEEEEEEE
T ss_pred             ceEeechhHHhcchhhhhh-H---HHHHHHHHHHHHHhCCCCCceEEEEE
Confidence            999863     44432100 0   00124699999999999999998763

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.54  E-value=2.6e-14  Score=115.84  Aligned_cols=93  Identities=17%  Similarity=0.297  Sum_probs=73.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..++      .++|||+|+.|++.|++             .++.++++|+.+ ++  ++++++|.|
T Consensus        38 ~~vLDiGcG~G~~~~~~~------~~~giD~s~~~~~~a~~-------------~~~~~~~~d~~~-l~--~~~~~fD~I   95 (208)
T d1vlma_          38 GRGVEIGVGTGRFAVPLK------IKIGVEPSERMAEIARK-------------RGVFVLKGTAEN-LP--LKDESFDFA   95 (208)
T ss_dssp             SCEEEETCTTSTTHHHHT------CCEEEESCHHHHHHHHH-------------TTCEEEECBTTB-CC--SCTTCEEEE
T ss_pred             CeEEEECCCCcccccccc------eEEEEeCChhhcccccc-------------cccccccccccc-cc--ccccccccc
Confidence            379999999999988774      35899999999987753             168899999863 54  678999999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      ++.+.-.+...        -..+++++.++|+|||.+++.+.+
T Consensus        96 ~~~~~l~h~~d--------~~~~l~~~~~~L~pgG~l~i~~~~  130 (208)
T d1vlma_          96 LMVTTICFVDD--------PERALKEAYRILKKGGYLIVGIVD  130 (208)
T ss_dssp             EEESCGGGSSC--------HHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred             ccccccccccc--------cccchhhhhhcCCCCceEEEEecC
Confidence            98764333221        125999999999999999998754

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.53  E-value=1.3e-14  Score=123.74  Aligned_cols=103  Identities=17%  Similarity=0.292  Sum_probs=81.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ..|||||||+|.++..+|...| +..++|||+|+.+++.|++++...      + .|+.|+++|+.+ ++  + ++++|.
T Consensus        29 ~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~------~-~~~~f~~~d~~~-~~--~-~~~fD~   97 (281)
T d2gh1a1          29 VHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL------P-YDSEFLEGDATE-IE--L-NDKYDI   97 (281)
T ss_dssp             CEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSS------S-SEEEEEESCTTT-CC--C-SSCEEE
T ss_pred             CEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccc------c-cccccccccccc-cc--c-cCCceE
Confidence            4799999999999999999877 478999999999999998876432      3 379999999863 43  3 468999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      |+++..-.|...        ...+++++.++|||||.+++.+.
T Consensus        98 v~~~~~l~~~~d--------~~~~l~~~~~~LkpgG~lii~~~  132 (281)
T d2gh1a1          98 AICHAFLLHMTT--------PETMLQKMIHSVKKGGKIICFEP  132 (281)
T ss_dssp             EEEESCGGGCSS--------HHHHHHHHHHTEEEEEEEEEEEC
T ss_pred             EEEehhhhcCCC--------HHHHHHHHHHHcCcCcEEEEEEC
Confidence            998754332211        12599999999999999988764

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=4.4e-14  Score=120.51  Aligned_cols=105  Identities=15%  Similarity=0.293  Sum_probs=79.1

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..|||||||.|.++..+|+.. ++.|+|||+|+++++.|++++...     ....++.+...|..+ +     ++++|
T Consensus        52 ~g~~VLDiGCG~G~~a~~~a~~~-g~~v~gi~ls~~q~~~a~~~~~~~-----~l~~~~~~~~~d~~~-~-----~~~fD  119 (280)
T d2fk8a1          52 PGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLASI-----DTNRSRQVLLQGWED-F-----AEPVD  119 (280)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTS-----CCSSCEEEEESCGGG-C-----CCCCS
T ss_pred             CCCEEEEecCCchHHHHHHHHhC-ceeEEEecchHHHHHHHHHHHHhh-----ccccchhhhhhhhhh-h-----ccchh
Confidence            36699999999999999999886 579999999999999998877543     223467888788652 2     46889


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|+..----+...++      .+.++++++++|||||++++.+
T Consensus       120 ~i~si~~~eh~~~~~------~~~~f~~i~~~LkpgG~~~i~~  156 (280)
T d2fk8a1         120 RIVSIEAFEHFGHEN------YDDFFKRCFNIMPADGRMTVQS  156 (280)
T ss_dssp             EEEEESCGGGTCGGG------HHHHHHHHHHHSCTTCEEEEEE
T ss_pred             hhhHhhHHHHhhhhh------HHHHHHHHHhccCCCceEEEEE
Confidence            998653221111111      2369999999999999999865

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.53  E-value=4.4e-14  Score=120.80  Aligned_cols=106  Identities=14%  Similarity=0.277  Sum_probs=82.5

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..|||||||.|.+++.+|+.+ ++.|+||.+|+..++.|++++.+.     ...+++++..+|..+ +     ++++|
T Consensus        62 ~G~~VLDiGCG~G~~a~~~a~~~-g~~v~git~s~~Q~~~a~~~~~~~-----g~~~~v~~~~~d~~~-~-----~~~fD  129 (285)
T d1kpga_          62 PGMTLLDVGCGWGATMMRAVEKY-DVNVVGLTLSKNQANHVQQLVANS-----ENLRSKRVLLAGWEQ-F-----DEPVD  129 (285)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHTC-----CCCSCEEEEESCGGG-C-----CCCCS
T ss_pred             CCCEEEEecCcchHHHHHHHhcC-CcceEEEeccHHHHHHHHHHHHhh-----hhhhhhHHHHhhhhc-c-----ccccc
Confidence            46799999999999999999998 589999999999999998876543     456789999999763 3     35788


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|+..-.--+...+      -...+++++.++|||||++++.+-
T Consensus       130 ~i~si~~~eh~~~~------~~~~~~~~~~r~LkpgG~~~l~~i  167 (285)
T d1kpga_         130 RIVSIGAFEHFGHE------RYDAFFSLAHRLLPADGVMLLHTI  167 (285)
T ss_dssp             EEEEESCGGGTCTT------THHHHHHHHHHHSCTTCEEEEEEE
T ss_pred             ceeeehhhhhcCch------hHHHHHHHHHhhcCCCCcEEEEEE
Confidence            88765322221100      013699999999999999998664

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.52  E-value=3.9e-15  Score=118.87  Aligned_cols=112  Identities=11%  Similarity=-0.019  Sum_probs=78.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc------CCCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS------NPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~------~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      +..|||||||+|..+..||++  +..|+|||+|+.|++.|++++......      ......++.++.+|+.+ ++ ...
T Consensus        21 ~~rvLd~GCG~G~~a~~la~~--G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-l~-~~~   96 (201)
T d1pjza_          21 GARVLVPLCGKSQDMSWLSGQ--GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFA-LT-ARD   96 (201)
T ss_dssp             TCEEEETTTCCSHHHHHHHHH--CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSS-ST-HHH
T ss_pred             CCEEEEecCcCCHHHHHHHHc--CCceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccc-cc-ccc
Confidence            569999999999999999998  789999999999999998765321000      00012345677777653 32 133


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ...+|.|+....-.+...      .....+++.++++|||||.+++.+
T Consensus        97 ~~~~D~i~~~~~l~~l~~------~~~~~~~~~i~~~LkpgG~l~l~~  138 (201)
T d1pjza_          97 IGHCAAFYDRAAMIALPA------DMRERYVQHLEALMPQACSGLLIT  138 (201)
T ss_dssp             HHSEEEEEEESCGGGSCH------HHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred             ccceeEEEEEeeeEecch------hhhHHHHHHHHHhcCCCcEEEEEE
Confidence            467888887554322211      012369999999999999988865

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=1e-13  Score=114.69  Aligned_cols=105  Identities=16%  Similarity=0.099  Sum_probs=83.3

Q ss_pred             CCceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..|||+|||+|.++..+|+. .|...++|+|+++.|++.+.+++        ....|+..+..|+...-........+
T Consensus        73 pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a--------~~~~~~~~i~~d~~~~~~~~~~~~~v  144 (227)
T d1g8aa_          73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV--------EERRNIVPILGDATKPEEYRALVPKV  144 (227)
T ss_dssp             TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH--------SSCTTEEEEECCTTCGGGGTTTCCCE
T ss_pred             CCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH--------HhcCCceEEEEECCCcccccccccce
Confidence            4679999999999999999998 57889999999999999887654        24568888899886322212334678


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+..++.|..          ...++.++.+.|||||.+++++
T Consensus       145 D~i~~d~~~~~~----------~~~~l~~~~~~LkpgG~lvi~~  178 (227)
T d1g8aa_         145 DVIFEDVAQPTQ----------AKILIDNAEVYLKRGGYGMIAV  178 (227)
T ss_dssp             EEEEECCCSTTH----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             EEEEEEccccch----------HHHHHHHHHHhcccCCeEEEEE
Confidence            999888776642          1258999999999999999864

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.50  E-value=4e-14  Score=119.07  Aligned_cols=143  Identities=11%  Similarity=0.082  Sum_probs=99.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+|||+|.++..++..... .|+|||+|+.|++.|++++        .+.+++.|+++|+.+ ++  ++++++|.
T Consensus        94 ~~~vLD~GcG~G~~t~~ll~~~~~-~v~~vD~s~~~l~~a~~~~--------~~~~~~~~~~~d~~~-~~--~~~~~fD~  161 (254)
T d1xtpa_          94 TSRALDCGAGIGRITKNLLTKLYA-TTDLLEPVKHMLEEAKREL--------AGMPVGKFILASMET-AT--LPPNTYDL  161 (254)
T ss_dssp             CSEEEEETCTTTHHHHHTHHHHCS-EEEEEESCHHHHHHHHHHT--------TTSSEEEEEESCGGG-CC--CCSSCEEE
T ss_pred             CCeEEEecccCChhhHHHHhhcCc-eEEEEcCCHHHHHhhhccc--------cccccceeEEccccc-cc--cCCCccce
Confidence            458999999999999999887543 7999999999999988654        245689999999874 44  56789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccccccccccCccccCCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEALTKEELEADPVVKLLSS  225 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  225 (252)
                      |++...-.+....      ....+|+++.++|+|||.|+|......           ...+...     ..++..  .+.
T Consensus       162 I~~~~vl~hl~d~------d~~~~l~~~~~~LkpgG~iii~e~~~~-----------~~~~~~d-----~~d~~~--~rs  217 (254)
T d1xtpa_         162 IVIQWTAIYLTDA------DFVKFFKHCQQALTPNGYIFFKENCST-----------GDRFLVD-----KEDSSL--TRS  217 (254)
T ss_dssp             EEEESCGGGSCHH------HHHHHHHHHHHHEEEEEEEEEEEEBC-------------CCEEEE-----TTTTEE--EBC
T ss_pred             EEeeccccccchh------hhHHHHHHHHHhcCCCcEEEEEecCCC-----------CCcceec-----ccCCce--eCC
Confidence            9987654332110      012589999999999999998653211           0011100     111111  123


Q ss_pred             CCHHHHHHHHcCCCeEEEE
Q 025470          226 ATEEGQKVARNGGQTFQAV  244 (252)
Q Consensus       226 ~t~~e~~~~~~G~~i~~~~  244 (252)
                      ..+|++.+.+.|.++....
T Consensus       218 ~~~~~~l~~~aGf~ii~~~  236 (254)
T d1xtpa_         218 DIHYKRLFNESGVRVVKEA  236 (254)
T ss_dssp             HHHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHHHHcCCEEEEEE
Confidence            4478888899998876544

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.49  E-value=4.2e-14  Score=118.70  Aligned_cols=104  Identities=17%  Similarity=0.211  Sum_probs=79.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++++|+..++++|+ +.+++.+++++...     ....++.++.+|+.+.    . +.++|.
T Consensus        81 ~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~-----~~~~rv~~~~~D~~~~----~-~~~~D~  149 (253)
T d1tw3a2          81 VRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-----GLSDRVDVVEGDFFEP----L-PRKADA  149 (253)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT-----TCTTTEEEEECCTTSC----C-SSCEEE
T ss_pred             CCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHh-----hcccchhhccccchhh----c-ccchhh
Confidence            34899999999999999999999999999998 67888888877653     2346899999997531    2 346899


Q ss_pred             EEEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++..--. |+..       ....+|++++++|||||+|+|..
T Consensus       150 v~~~~vlh~~~d~-------~~~~~L~~~~~~LkPGG~l~i~e  185 (253)
T d1tw3a2         150 IILSFVLLNWPDH-------DAVRILTRCAEALEPGGRILIHE  185 (253)
T ss_dssp             EEEESCGGGSCHH-------HHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             eeeccccccCCch-------hhHHHHHHHHHhcCCCcEEEEEe
Confidence            98764321 1100       01258999999999999998853

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=8.8e-14  Score=114.87  Aligned_cols=113  Identities=11%  Similarity=-0.044  Sum_probs=80.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc-----------CCCCcccEEEEeCCccccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS-----------NPGQYQNISVVRTNSMKYI  134 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~-----------~~~~~~nv~~~~~da~~~l  134 (252)
                      +..|||+|||+|..+..||+.  +..|+|||+|+.+|+.|+++.......           ......++.++++|+.. +
T Consensus        46 ~~rvLd~GCG~G~~a~~LA~~--G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~-l  122 (229)
T d2bzga1          46 GLRVFFPLCGKAVEMKWFADR--GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD-L  122 (229)
T ss_dssp             SCEEEETTCTTCTHHHHHHHT--TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG-G
T ss_pred             CCEEEEeCCCCcHHHHHHHhC--CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh-c
Confidence            558999999999999999998  779999999999999887654211000           00122479999999864 4


Q ss_pred             CccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          135 PNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       135 ~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      . ....+.+|.|+....--...      .-....+++++.++|||||++++.+-
T Consensus       123 ~-~~~~~~fd~i~~~~~l~~~~------~~~r~~~~~~~~~~LkpgG~~~l~~~  169 (229)
T d2bzga1         123 P-RTNIGKFDMIWDRGALVAIN------PGDRKCYADTMFSLLGKKFQYLLCVL  169 (229)
T ss_dssp             G-GSCCCCEEEEEESSSTTTSC------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred             c-ccccCceeEEEEEEEEEecc------chhhHHHHHHHHhhcCCcceEEEEEc
Confidence            3 25568899998643221110      11124699999999999999888763

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=6.6e-14  Score=115.68  Aligned_cols=105  Identities=13%  Similarity=0.093  Sum_probs=81.7

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||||||+|..+..||+. .|...|+|||+++++++.|++++..... ...+..|+.++.+|+.. .  ..+.+.||
T Consensus        77 g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~-~~~~~~~~~~~~gD~~~-~--~~~~~~fD  152 (224)
T d1i1na_          77 GAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP-TLLSSGRVQLVVGDGRM-G--YAEEAPYD  152 (224)
T ss_dssp             TCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT-HHHHTSSEEEEESCGGG-C--CGGGCCEE
T ss_pred             CCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCc-ccccccceEEEEeeccc-c--cchhhhhh
Confidence            569999999999999999987 6788999999999999999988865400 00134689999999863 2  34578899


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      .|++....+.              +.+.+.+.|||||++++...
T Consensus       153 ~I~~~~~~~~--------------ip~~l~~~LkpGG~LV~pv~  182 (224)
T d1i1na_         153 AIHVGAAAPV--------------VPQALIDQLKPGGRLILPVG  182 (224)
T ss_dssp             EEEECSBBSS--------------CCHHHHHTEEEEEEEEEEES
T ss_pred             hhhhhcchhh--------------cCHHHHhhcCCCcEEEEEEc
Confidence            9999865433              33467889999999998543

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=5.4e-14  Score=120.24  Aligned_cols=115  Identities=16%  Similarity=0.178  Sum_probs=78.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccC-ccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIP-NYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~-~~~~~~s~d  144 (252)
                      ...|||||||+|.++..||++  +..|+|||+|+.|++.|+++....+.  .....+..+..+|... ++ .......+|
T Consensus        57 ~~~vLD~GcG~G~~~~~la~~--g~~v~gvD~S~~ml~~A~~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~fd  131 (292)
T d1xvaa_          57 CHRVLDVACGTGVDSIMLVEE--GFSVTSVDASDKMLKYALKERWNRRK--EPAFDKWVIEEANWLT-LDKDVPAGDGFD  131 (292)
T ss_dssp             CCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHHHTTT--SHHHHTCEEEECCGGG-HHHHSCCTTCEE
T ss_pred             CCEEEEecCCCcHHHHHHHHc--CCeeeeccCchHHHHHHHHHHHhccc--ccccceeeeeeccccc-cccccCCCCCce
Confidence            348999999999999999998  67899999999999999887654310  0111234555566542 22 122356899


Q ss_pred             EEEEeC------CCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          145 KMFFLF------PDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       145 ~i~~~f------pdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                      .|++.+      |++-..  ..    -...+|++++++|||||.|+|.+.+.+
T Consensus       132 ~v~~~~~~~~~~~~~~~~--~~----~~~~~l~~~~~~LkpgG~li~~~~~~~  178 (292)
T d1xvaa_         132 AVICLGNSFAHLPDSKGD--QS----EHRLALKNIASMVRPGGLLVIDHRNYD  178 (292)
T ss_dssp             EEEECSSCGGGSCCTTSS--SH----HHHHHHHHHHHTEEEEEEEEEEEECHH
T ss_pred             EEEEecCchhhcCCcccC--hH----HHHHHHHHHHHHcCcCcEEEEeecCHH
Confidence            888643      332110  00    012599999999999999999776543

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=3.1e-13  Score=117.15  Aligned_cols=115  Identities=15%  Similarity=0.083  Sum_probs=87.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~d  144 (252)
                      +..|||+|||+|.+++++|..  ...|+++|+|+.+++.|++++...      +++|+.++++|+.+.+... -....+|
T Consensus       146 g~rVLDl~~gtG~~s~~~a~g--~~~V~~vD~s~~al~~a~~n~~~n------gl~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         146 GERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENARLN------GLGNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             EEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHHHT------TCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCeeeccCCCCcHHHHHHHhc--CCcEEeecchHHHHHHHHHHHHHc------CCCCcceeeccHHHHhhhhHhhhcCCC
Confidence            569999999999999999875  568999999999999999988664      8889999999997644321 1246899


Q ss_pred             EEEEeCCCCcccccccccc--ccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLFPDPHFKEKNHRRR--VISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr--~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|+++.|.--.. +....+  -....++..+.++|+|||.|++.|.+
T Consensus       218 ~Vi~DpP~~~~~-~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs  263 (318)
T d1wxxa2         218 LVVLDPPAFAKG-KKDVERAYRAYKEVNLRAIKLLKEGGILATASCS  263 (318)
T ss_dssp             EEEECCCCSCCS-TTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEEcCCccccc-hHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            999987642211 111111  11346888999999999999998754

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.38  E-value=6.8e-13  Score=109.39  Aligned_cols=95  Identities=20%  Similarity=0.295  Sum_probs=75.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|.++..||+.  ...|+++|+++.+++.|++++.        ...|+.++.+|....   +...+.+|.
T Consensus        71 g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~--------~~~nv~~~~~d~~~g---~~~~~pfD~  137 (224)
T d1vbfa_          71 GQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLS--------YYNNIKLILGDGTLG---YEEEKPYDR  137 (224)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHT--------TCSSEEEEESCGGGC---CGGGCCEEE
T ss_pred             cceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHh--------cccccccccCchhhc---chhhhhHHH
Confidence            569999999999999999998  4689999999999999987642        457999999997632   233578999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++...-+.              +...+.+.|+|||++++-.
T Consensus       138 Iiv~~a~~~--------------ip~~l~~qLk~GGrLV~pv  165 (224)
T d1vbfa_         138 VVVWATAPT--------------LLCKPYEQLKEGGIMILPI  165 (224)
T ss_dssp             EEESSBBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             HHhhcchhh--------------hhHHHHHhcCCCCEEEEEE
Confidence            998764332              3345667899999998854

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.38  E-value=2.3e-13  Score=114.50  Aligned_cols=103  Identities=19%  Similarity=0.236  Sum_probs=78.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..|||||||+|.++..+++++|+..++++|+ +.+++.|++++...     ...+++.++.+|..+    .+ +..+|.|
T Consensus        83 ~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~-----~~~~ri~~~~~d~~~----~~-p~~~D~v  151 (256)
T d1qzza2          83 RHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-----GLADRVTVAEGDFFK----PL-PVTADVV  151 (256)
T ss_dssp             CEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT-----TCTTTEEEEECCTTS----CC-SCCEEEE
T ss_pred             CEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc-----CCcceeeeeeeeccc----cc-cccchhh
Confidence            4899999999999999999999999999998 77888888877653     234579999998643    13 3458988


Q ss_pred             EEeCCCC-ccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          147 FFLFPDP-HFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       147 ~~~fpdP-~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ++.+--. |...       ....+|++++++|||||+|+|..
T Consensus       152 ~~~~vLh~~~d~-------~~~~lL~~i~~~LkpgG~llI~d  186 (256)
T d1qzza2         152 LLSFVLLNWSDE-------DALTILRGCVRALEPGGRLLVLD  186 (256)
T ss_dssp             EEESCGGGSCHH-------HHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             hccccccccCcH-------HHHHHHHHHHhhcCCcceeEEEE
Confidence            8754321 2111       01358999999999999998864

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.37  E-value=8.4e-13  Score=111.26  Aligned_cols=99  Identities=12%  Similarity=0.154  Sum_probs=81.2

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCccc-EEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQN-ISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~n-v~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++.+|||+|||+|.+++.+|+.. .+.++|+|+++.+++.+++++...      ++.| +.++++|+.+.    ...+.+
T Consensus       107 ~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~~n------~l~~~v~~~~~D~~~~----~~~~~~  175 (260)
T d2frna1         107 PDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIHLN------KVEDRMSAYNMDNRDF----PGENIA  175 (260)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHHHT------TCTTTEEEECSCTTTC----CCCSCE
T ss_pred             CccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHHHh------CCCceEEEEEcchHHh----ccCCCC
Confidence            46699999999999999999884 568999999999999999998664      6654 99999998753    336789


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+++.|.-.            ..++..+.++|++||.+++-
T Consensus       176 D~Ii~~~p~~~------------~~~l~~a~~~l~~gG~lh~~  206 (260)
T d2frna1         176 DRILMGYVVRT------------HEFIPKALSIAKDGAIIHYH  206 (260)
T ss_dssp             EEEEECCCSSG------------GGGHHHHHHHEEEEEEEEEE
T ss_pred             CEEEECCCCch------------HHHHHHHHhhcCCCCEEEEE
Confidence            99998765211            24899999999999999764

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=7.4e-13  Score=115.22  Aligned_cols=110  Identities=16%  Similarity=0.156  Sum_probs=79.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---CCCCcccEEEEeCCcccccCccCCCC
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---NPGQYQNISVVRTNSMKYIPNYFEKG  141 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~~~~da~~~l~~~~~~~  141 (252)
                      +..+|||||||+|.++..+|+..+...++|||+++.+++.|+++....+..   ......++.|+++|+.. ++  +.+.
T Consensus       151 ~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~-~~--~~~~  227 (328)
T d1nw3a_         151 DDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS-EE--WRER  227 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS-HH--HHHH
T ss_pred             CCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc-cc--cccc
Confidence            366999999999999999999998888999999999999998876654211   11234689999999863 33  2232


Q ss_pred             --cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 --QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 --s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                        ..|.|+++----++.         -...|.++.+.|||||+|+..
T Consensus       228 ~~~advi~~~~~~f~~~---------~~~~l~e~~r~LKpGg~iv~~  265 (328)
T d1nw3a_         228 IANTSVIFVNNFAFGPE---------VDHQLKERFANMKEGGRIVSS  265 (328)
T ss_dssp             HHHCSEEEECCTTTCHH---------HHHHHHHHHTTCCTTCEEEES
T ss_pred             cCcceEEEEcceecchH---------HHHHHHHHHHhCCCCcEEEEe
Confidence              246677642211111         124789999999999999764

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=5.3e-13  Score=113.06  Aligned_cols=109  Identities=17%  Similarity=0.211  Sum_probs=77.9

Q ss_pred             ceEEEEcCcccHHHHHHHHH----CCC--CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEE--EEeCCcccc---cC
Q 025470           67 IQFADIGCGFGGLLISLSTL----FPE--VLMIGMELRDKVTEYVKERILALRVSNPGQYQNIS--VVRTNSMKY---IP  135 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~----~p~--~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~--~~~~da~~~---l~  135 (252)
                      -.|||||||+|.++..++..    +++  ..++|||+|+.|++.|++++...     ..+.++.  +...++.+.   ..
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI-----SNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC-----CSCTTEEEEEECSCHHHHHHHHT
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc-----cccccccccchhhhhhhhcchhc
Confidence            37999999999998877664    444  36799999999999998876432     3445554  445554321   12


Q ss_pred             ccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          136 NYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       136 ~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      ..++++++|.|++.+.-.|....        ..+|+.+.++|+|||.+++.+.
T Consensus       117 ~~~~~~~fD~I~~~~~l~~~~d~--------~~~l~~l~~~LkpgG~l~i~~~  161 (280)
T d1jqea_         117 EKKELQKWDFIHMIQMLYYVKDI--------PATLKFFHSLLGTNAKMLIIVV  161 (280)
T ss_dssp             TSSSCCCEEEEEEESCGGGCSCH--------HHHHHHHHHTEEEEEEEEEEEE
T ss_pred             ccCCCCceeEEEEccceecCCCH--------HHHHHHHHhhCCCCCEEEEEEe
Confidence            23567899999987655444221        2699999999999999988764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.32  E-value=3.9e-12  Score=110.36  Aligned_cols=133  Identities=13%  Similarity=0.046  Sum_probs=94.1

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCcc-CCCCc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNY-FEKGQ  142 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~-~~~~s  142 (252)
                      ++..|||+|||+|.+++.+|.... ..++++|+++.+++.|++|+...      ++ .++.++++|+.+.+... .....
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga-~~V~~vD~s~~al~~a~~N~~~n------gl~~~~~~~~~d~~~~~~~~~~~~~~  217 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGA-DEVIGIDKSPRAIETAKENAKLN------GVEDRMKFIVGSAFEEMEKLQKKGEK  217 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHHHHHHTTCC
T ss_pred             CCCeeecccCcccchhhhhhhcCC-cEEEeecCCHHHHHHHHHHHHHc------CCCccceeeechhhhhhHHHHhccCC
Confidence            356999999999999999998853 48999999999999999988664      65 58999999987654322 13468


Q ss_pred             ccEEEEeCCCCcccccc-ccccccCHHHHHHHHHhhcCCcEEEEEeCc-----hHHHHHHHHHHhcCC
Q 025470          143 LTKMFFLFPDPHFKEKN-HRRRVISPHLLDEYAYVLGVGGIIYTITDV-----EELGDWMRSCLENHP  204 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h-~krr~~~~~~l~~~~~~LkpgG~l~~~td~-----~~~~~~~~~~~~~~~  204 (252)
                      ||.|+++.|.--..+.. ....-....++..+.++|+|||.|+++|-.     +++.+.+.+.....+
T Consensus       218 fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~~~~~~f~~~v~~a~~~~g  285 (324)
T d2as0a2         218 FDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQHVDLQMFKDMIIAAGAKAG  285 (324)
T ss_dssp             EEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred             CCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCccCCHHHHHHHHHHHHHHcC
Confidence            99999987643211110 000012345888899999999999998754     334444444444443

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.30  E-value=3.1e-12  Score=104.77  Aligned_cols=98  Identities=15%  Similarity=0.223  Sum_probs=78.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||+|..+..||+.. +..+++||+++.+++.|++++...      +..|+.++++|+...   +...+.+|.
T Consensus        79 g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~~~------g~~nv~~~~gd~~~g---~~~~~pfD~  148 (215)
T d1jg1a_          79 GMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLERA------GVKNVHVILGDGSKG---FPPKAPYDV  148 (215)
T ss_dssp             TCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHHHT------TCCSEEEEESCGGGC---CGGGCCEEE
T ss_pred             cceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHHHc------CCceeEEEECccccC---CcccCccee
Confidence            5689999999999999999875 356999999999999999998775      889999999998642   244688999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |++.-.-+.              +-..+...|+|||++++..
T Consensus       149 Iiv~~a~~~--------------ip~~l~~qL~~gGrLv~pv  176 (215)
T d1jg1a_         149 IIVTAGAPK--------------IPEPLIEQLKIGGKLIIPV  176 (215)
T ss_dssp             EEECSBBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             EEeeccccc--------------CCHHHHHhcCCCCEEEEEE
Confidence            998754332              2223556799999998753

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.30  E-value=4.4e-12  Score=104.44  Aligned_cols=104  Identities=15%  Similarity=0.170  Sum_probs=79.3

Q ss_pred             CceEEEEcCcccHHHHHHHHH------CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL------FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~------~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~  139 (252)
                      ...|||||||+|.++..||+.      .+...|++||+++++++.|++++..... ...+..|+.++.+|+.+.   +.+
T Consensus        81 g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~-~~~~~~nv~~~~~d~~~~---~~~  156 (223)
T d1r18a_          81 GARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDR-SMLDSGQLLIVEGDGRKG---YPP  156 (223)
T ss_dssp             TCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHH-HHHHHTSEEEEESCGGGC---CGG
T ss_pred             CCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcch-hhcCccEEEEEecccccc---ccc
Confidence            569999999999999999887      3456899999999999999887654210 012467999999998642   345


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+.+|.|++...-+.              +-..+.+.|||||++++..
T Consensus       157 ~~~fD~Iiv~~a~~~--------------~p~~l~~~Lk~gG~lV~pv  190 (223)
T d1r18a_         157 NAPYNAIHVGAAAPD--------------TPTELINQLASGGRLIVPV  190 (223)
T ss_dssp             GCSEEEEEECSCBSS--------------CCHHHHHTEEEEEEEEEEE
T ss_pred             ccceeeEEEEeechh--------------chHHHHHhcCCCcEEEEEE
Confidence            678999999775432              2345678999999998854

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.30  E-value=3.6e-12  Score=98.74  Aligned_cols=106  Identities=18%  Similarity=0.189  Sum_probs=80.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|.+++..+.+.. ..+++||.++.+++.+++++...     +...++.++++|+...+.  .....+|.
T Consensus        15 g~~vlDl~~GtG~~~iea~~rga-~~v~~ve~~~~a~~~~~~n~~~~-----~~~~~~~ii~~D~~~~l~--~~~~~fDi   86 (152)
T d2esra1          15 GGRVLDLFAGSGGLAIEAVSRGM-SAAVLVEKNRKAQAIIQDNIIMT-----KAENRFTLLKMEAERAID--CLTGRFDL   86 (152)
T ss_dssp             SCEEEEETCTTCHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHHTT-----TCGGGEEEECSCHHHHHH--HBCSCEEE
T ss_pred             CCeEEEcCCccCHHHHHHHHhCc-ceeeeehhchhhhhhhhhhhhhc-----ccccchhhhccccccccc--ccccccce
Confidence            45899999999999999888865 48999999999999999888654     233569999999986554  23678999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHH--HhhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYA--YVLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~--~~LkpgG~l~~~td  188 (252)
                      |++..|  +.+...       ...+..+.  ++|+|||.+++.+.
T Consensus        87 If~DPP--y~~~~~-------~~~l~~i~~~~~L~~~g~iiiE~~  122 (152)
T d2esra1          87 VFLDPP--YAKETI-------VATIEALAAKNLLSEQVMVVCETD  122 (152)
T ss_dssp             EEECCS--SHHHHH-------HHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             eEechh--hccchH-------HHHHHHHHHCCCcCCCeEEEEEeC
Confidence            988643  322211       23566554  46999999998653

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.2e-12  Score=108.92  Aligned_cols=117  Identities=12%  Similarity=-0.070  Sum_probs=73.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCC-----------C------------ccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPG-----------Q------------YQN  122 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~-----------~------------~~n  122 (252)
                      +..|||||||+|.++..+|... ...++|+|+|+.|++.|++++.........           +            ..+
T Consensus        52 g~~vLDlGcG~G~~~~~~~~~~-~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (257)
T d2a14a1          52 GDTLIDIGSGPTIYQVLAACDS-FQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAA  130 (257)
T ss_dssp             EEEEEESSCTTCCGGGTTGGGT-EEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCHhHHHHhccc-cCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhh
Confidence            4589999999999988887764 347999999999999999876532100000           0            001


Q ss_pred             E-EEEeCCcc-cccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          123 I-SVVRTNSM-KYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       123 v-~~~~~da~-~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      + .....+.. +.+...++.+++|.|+..+.-.+.....    .....++++++++|||||.+++.+
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~~~----~~~~~~l~~i~~~LkpGG~li~~~  193 (257)
T d2a14a1         131 VKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSL----DAYRAALCNLASLLKPGGHLVTTV  193 (257)
T ss_dssp             EEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSH----HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             hhcccccccccccccccccCCcccEEeehhhHHHhcccH----HHHHHHHHHHHhccCCCcEEEEEE
Confidence            1 11111111 1122346678999999876422211000    011258999999999999999865

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.25  E-value=1.8e-11  Score=106.19  Aligned_cols=104  Identities=18%  Similarity=0.235  Sum_probs=75.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.+|||||||+|.+++.+|++. ...|+|+|.++ ++..|++++...     +...++.++++|+.+ ++  +++.++|.
T Consensus        39 ~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~~-----~~~~~i~~i~~~~~~-l~--~~~~~~D~  108 (328)
T d1g6q1_          39 DKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVELN-----GFSDKITLLRGKLED-VH--LPFPKVDI  108 (328)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHHT-----TCTTTEEEEESCTTT-SC--CSSSCEEE
T ss_pred             cCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHHh-----CccccceEEEeehhh-cc--CcccceeE
Confidence            4589999999999999888874 35899999996 566777666543     345689999999864 43  66789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      |+..........     -.....++..+.++|||||.++
T Consensus       109 i~se~~~~~~~~-----e~~~~~~~~a~~r~LkpgG~ii  142 (328)
T d1g6q1_         109 IISEWMGYFLLY-----ESMMDTVLYARDHYLVEGGLIF  142 (328)
T ss_dssp             EEECCCBTTBST-----TCCHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEEecceeecc-----chhHHHHHHHHHhccCCCeEEE
Confidence            987543222110     0112358888899999999984

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.24  E-value=1e-11  Score=110.37  Aligned_cols=110  Identities=15%  Similarity=0.144  Sum_probs=72.0

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---CCCCcccEEE-EeCCccc--ccCccC
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---NPGQYQNISV-VRTNSMK--YIPNYF  138 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---~~~~~~nv~~-~~~da~~--~l~~~~  138 (252)
                      ++.+|||||||.|.+++.+|...+...++|||+++.+++.|+++....+..   ......++.+ +.++...  ..+..+
T Consensus       216 pgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~~  295 (406)
T d1u2za_         216 KGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAELI  295 (406)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHHG
T ss_pred             CCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhcccccccc
Confidence            466999999999999999999988778999999999999999887654211   0111222333 2333321  011111


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                        ..+|.|+++---.++.         -...|.++.+.|||||+|+.
T Consensus       296 --~~adVV~inn~~f~~~---------l~~~L~ei~r~LKPGGrIVs  331 (406)
T d1u2za_         296 --PQCDVILVNNFLFDED---------LNKKVEKILQTAKVGCKIIS  331 (406)
T ss_dssp             --GGCSEEEECCTTCCHH---------HHHHHHHHHTTCCTTCEEEE
T ss_pred             --ccceEEEEecccCchH---------HHHHHHHHHHhcCCCcEEEE
Confidence              2456777652111111         12588999999999999865

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.6e-11  Score=104.30  Aligned_cols=104  Identities=13%  Similarity=0.176  Sum_probs=75.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.+|||||||+|.+++.+|+..+ ..|+|+|.++.++. |.+.+.+.     +...++.++++|+.+ +.  +++..+|.
T Consensus        36 ~~~VLDiGcG~G~lsl~aa~~Ga-~~V~aid~s~~~~~-a~~~~~~~-----~~~~~i~~~~~~~~~-l~--~~~~~~D~  105 (311)
T d2fyta1          36 DKVVLDVGCGTGILSMFAAKAGA-KKVLGVDQSEILYQ-AMDIIRLN-----KLEDTITLIKGKIEE-VH--LPVEKVDV  105 (311)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-SEEEEEESSTHHHH-HHHHHHHT-----TCTTTEEEEESCTTT-SC--CSCSCEEE
T ss_pred             cCEEEEECCCCCHHHHHHHHcCC-CEEEEEeCHHHHHH-HHHHHHHh-----CCCccceEEEeeHHH-hc--CccccceE
Confidence            45899999999999999998854 58999999998764 44444332     356789999999874 43  55789999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      |+........-.     ......++....++|||||.++
T Consensus       106 Ivse~~~~~~~~-----e~~~~~~~~a~~~~Lkp~G~ii  139 (311)
T d2fyta1         106 IISEWMGYFLLF-----ESMLDSVLYAKNKYLAKGGSVY  139 (311)
T ss_dssp             EEECCCBTTBTT-----TCHHHHHHHHHHHHEEEEEEEE
T ss_pred             EEEeeeeeeccc-----ccccHHHHHHHHhcCCCCcEEe
Confidence            987543322110     0112357777889999999886

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.22  E-value=2.8e-11  Score=104.35  Aligned_cols=104  Identities=13%  Similarity=0.161  Sum_probs=74.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +.+|||||||+|.+++.+|+..+ ..|+|||.++.+ ..|.+++...     +...+|.++++|+.+ ++  ++.+++|.
T Consensus        34 ~~~VLDiGcG~G~ls~~aa~~Ga-~~V~avd~s~~~-~~a~~~~~~n-----~~~~~v~~~~~~~~~-~~--~~~~~~D~  103 (316)
T d1oria_          34 DKVVLDVGSGTGILCMFAAKAGA-RKVIGIECSSIS-DYAVKIVKAN-----KLDHVVTIIKGKVEE-VE--LPVEKVDI  103 (316)
T ss_dssp             TCEEEEETCTTSHHHHHHHHTTC-SEEEEEECSTTH-HHHHHHHHHT-----TCTTTEEEEESCTTT-CC--CSSSCEEE
T ss_pred             cCEEEEEecCCcHHHHHHHHhCC-CEEEEEcCcHHH-hhhhhHHHHh-----CCccccceEeccHHH-cc--cccceeEE
Confidence            45899999999999998888743 479999999865 4555554432     234579999999874 44  56788999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      |+........-     ..-..+.++..+.++|||||.++
T Consensus       104 ivs~~~~~~l~-----~e~~~~~~l~~~~r~Lkp~G~ii  137 (316)
T d1oria_         104 IISEWMGYCLF-----YESMLNTVLHARDKWLAPDGLIF  137 (316)
T ss_dssp             EEECCCBBTBT-----BTCCHHHHHHHHHHHEEEEEEEE
T ss_pred             Eeeeeeeeeec-----cHHHHHHHHHHHHhcCCCCeEEE
Confidence            98654322110     00112468899999999999986

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.21  E-value=1.6e-11  Score=106.08  Aligned_cols=118  Identities=11%  Similarity=0.036  Sum_probs=85.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-CCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-EKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-~~~s~d  144 (252)
                      +..|||++||+|.+++.+|... ...+++||+++.+++.|++|+...    ..+..++.++++|+.+.+.... ....+|
T Consensus       145 g~~VLdlf~~~G~~sl~aa~~g-a~~V~~vD~s~~a~~~a~~N~~~n----~l~~~~~~~i~~d~~~~l~~~~~~~~~fD  219 (317)
T d2b78a2         145 GKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFEAN----HLDMANHQLVVMDVFDYFKYARRHHLTYD  219 (317)
T ss_dssp             TCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHHHT----TCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCceeecCCCCcHHHHHHHhCC-CceEEEecCCHHHHHHHHHHHHHh----cccCcceEEEEccHHHHHHHHHhhcCCCC
Confidence            5689999999999999888763 347999999999999999988653    1233589999999976664322 235799


Q ss_pred             EEEEeCCCCccccccccccc--cCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          145 KMFFLFPDPHFKEKNHRRRV--ISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~--~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      .|++..|. +.+.+......  ....+++.+.++|+|||.|+++|..
T Consensus       220 ~Ii~DPP~-f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs  265 (317)
T d2b78a2         220 IIIIDPPS-FARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNA  265 (317)
T ss_dssp             EEEECCCC-C-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred             EEEEcChh-hccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCC
Confidence            99997652 22211111111  1346889999999999999998864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.20  E-value=2.1e-11  Score=98.05  Aligned_cols=133  Identities=14%  Similarity=0.193  Sum_probs=92.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc---cCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN---YFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~---~~~~~s  142 (252)
                      ...+||++||+|.++..+++.+|++.++|+|.++.|++.|++++...       ..++.+++++..+ +..   .+..+.
T Consensus        24 ~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~-------~~r~~~~~~~f~~-~~~~~~~~~~~~   95 (192)
T d1m6ya2          24 EKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF-------SDRVSLFKVSYRE-ADFLLKTLGIEK   95 (192)
T ss_dssp             TCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-------TTTEEEEECCGGG-HHHHHHHTTCSC
T ss_pred             CCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-------cccccchhHHHhh-HHHHHHHcCCCC
Confidence            56999999999999999999999999999999999999998876432       3579999998753 321   234578


Q ss_pred             ccEEEEeCCCCcccccccccc-ccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCc
Q 025470          143 LTKMFFLFPDPHFKEKNHRRR-VISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMF  206 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr-~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~  206 (252)
                      +|.|++.+.-.-+.-....|- -.....|..+.++|+|||.+.+.+-...--..+...+.....+
T Consensus        96 vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Edr~vk~~f~~~~~~  160 (192)
T d1m6ya2          96 VDGILMDLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLEDRIVKETFRNSKKL  160 (192)
T ss_dssp             EEEEEEECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHHHHHHHHHHHCSSE
T ss_pred             cceeeeccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHHHHHHHHHhhcccc
Confidence            999998764211110000111 1134688999999999999999885532222333344444433

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=1.1e-10  Score=97.41  Aligned_cols=80  Identities=16%  Similarity=0.120  Sum_probs=64.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCcc---CCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNY---FEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~---~~~~  141 (252)
                      ...+||||||+|..++.||.+.|+++++|+|+++.+++.|++++...      ++ .++.+++.+....+...   ..++
T Consensus        62 ~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n------~l~~~~~~~~~~~~~~~~~~~~~~~~~  135 (250)
T d2h00a1          62 LRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN------NLSDLIKVVKVPQKTLLMDALKEESEI  135 (250)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT------TCTTTEEEEECCTTCSSTTTSTTCCSC
T ss_pred             cceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHh------CCCcceeeeeeccHHhhhhhhhhcccC
Confidence            34899999999999999999999999999999999999999998764      44 45888877654333211   2356


Q ss_pred             cccEEEEeCC
Q 025470          142 QLTKMFFLFP  151 (252)
Q Consensus       142 s~d~i~~~fp  151 (252)
                      .+|.|+.|.|
T Consensus       136 ~fD~ivsNPP  145 (250)
T d2h00a1         136 IYDFCMCNPP  145 (250)
T ss_dssp             CBSEEEECCC
T ss_pred             ceeEEEecCc
Confidence            7999999875

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=99.19  E-value=7.9e-11  Score=101.42  Aligned_cols=132  Identities=12%  Similarity=0.121  Sum_probs=101.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||.||.|.|..+..+++..|..++++||+++.+++.|++.+..... ....-++++++.+|+.+.+..  .+..+|.|
T Consensus        79 k~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~-~~~~d~rv~i~~~Da~~~l~~--~~~~yDvI  155 (312)
T d1uira_          79 KRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-GAFDDPRAVLVIDDARAYLER--TEERYDVV  155 (312)
T ss_dssp             CEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-TGGGCTTEEEEESCHHHHHHH--CCCCEEEE
T ss_pred             ceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCccccc-CccCCCceEEEEchHHHHhhh--cCCcccEE
Confidence            479999999999999999888888999999999999999887644210 111346899999999987753  35789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC-----chHHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD-----VEELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td-----~~~~~~~~~~~~~~  202 (252)
                      ++..+||+.. .....++.+.+|++.+.+.|+|||.+++.+.     ..+....+.+.+.+
T Consensus       156 i~D~~dp~~~-~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~~s~~~~~~~~~~~i~~tl~~  215 (312)
T d1uira_         156 IIDLTDPVGE-DNPARLLYTVEFYRLVKAHLNPGGVMGMQTGMILLTHHRVHPVVHRTVRE  215 (312)
T ss_dssp             EEECCCCBST-TCGGGGGSSHHHHHHHHHTEEEEEEEEEEEEEECC---CHHHHHHHHHHT
T ss_pred             EEeCCCcccc-cchhhhhhhHHHHHHHHHhcCCCceEEEecCCcccchHHHHHHHHHHHHH
Confidence            9999999753 2234567888999999999999999998653     23445556666654

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=3e-11  Score=98.69  Aligned_cols=104  Identities=15%  Similarity=0.260  Sum_probs=79.2

Q ss_pred             ceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCcc---CCCC
Q 025470           67 IQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNY---FEKG  141 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~---~~~~  141 (252)
                      ..|||||||.|..++.+|+..+ +..++++|+++.+++.|+.++...      ++ .+|.++.+|+.+.++..   +..+
T Consensus        58 k~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~------gl~~~i~l~~Gd~~e~l~~l~~~~~~~  131 (214)
T d2cl5a1          58 SLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFA------GLQDKVTILNGASQDLIPQLKKKYDVD  131 (214)
T ss_dssp             SEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHH------TCGGGEEEEESCHHHHGGGHHHHSCCC
T ss_pred             CEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHc------CCCccceeeeccccccccchhhccccc
Confidence            4899999999999999999864 689999999999999999988765      55 56999999998766543   2346


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .+|.|++.   .+..      .-.....+.+..++|+|||.|++
T Consensus       132 ~~D~ifiD---~~~~------~~~~~~~l~~~~~lLkpGGvIv~  166 (214)
T d2cl5a1         132 TLDMVFLD---HWKD------RYLPDTLLLEKCGLLRKGTVLLA  166 (214)
T ss_dssp             CEEEEEEC---SCGG------GHHHHHHHHHHTTCEEEEEEEEE
T ss_pred             ccceeeec---cccc------ccccHHHHHHHhCccCCCcEEEE
Confidence            78998874   2311      10111246667788999997654

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.16  E-value=4.9e-11  Score=102.32  Aligned_cols=114  Identities=12%  Similarity=0.077  Sum_probs=81.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc--ccEEEEeCCcccccCccC-CCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQY--QNISVVRTNSMKYIPNYF-EKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~--~nv~~~~~da~~~l~~~~-~~~s  142 (252)
                      ...|||++||+|.+++.+|..  +..|++||.|+.+++.|++|+...      ++  .+++|+++|+...+.... ....
T Consensus       133 ~~rVLdlf~~tG~~sl~aa~~--GA~V~~VD~s~~al~~a~~N~~ln------~~~~~~~~~i~~D~~~~l~~~~~~~~~  204 (309)
T d2igta1         133 PLKVLNLFGYTGVASLVAAAA--GAEVTHVDASKKAIGWAKENQVLA------GLEQAPIRWICEDAMKFIQREERRGST  204 (309)
T ss_dssp             CCEEEEETCTTCHHHHHHHHT--TCEEEEECSCHHHHHHHHHHHHHH------TCTTSCEEEECSCHHHHHHHHHHHTCC
T ss_pred             CCeEEEecCCCcHHHHHHHhC--CCeEEEEeChHHHHHHHHHhhhhh------cccCCcEEEEeCCHHHhHHHHhhcCCC
Confidence            458999999999999999887  568999999999999999998664      44  369999999986654322 2468


Q ss_pred             ccEEEEeCCCCccccccccccc--cCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRV--ISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~--~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|+++.|.=-..+++....+  -...++..+.++|+|||.+++.|
T Consensus       205 fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t  251 (309)
T d2igta1         205 YDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLT  251 (309)
T ss_dssp             BSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEE
T ss_pred             CCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEe
Confidence            9999997652111111111111  12347778889999999766654

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-11  Score=103.56  Aligned_cols=118  Identities=10%  Similarity=-0.059  Sum_probs=75.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCC------------------------CCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNP------------------------GQYQ  121 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~------------------------~~~~  121 (252)
                      ...+||||||+|.+.+..+.... .+++|+|+|+.|++.+++++......-.                        ....
T Consensus        55 g~~vLDiGcG~g~~~~~~~~~~~-~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T d2g72a1          55 GRTLIDIGSGPTVYQLLSACSHF-EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  133 (263)
T ss_dssp             CSEEEEETCTTCCGGGTTGGGGC-SEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CcEEEEeccCCCHHHHHHhcccC-CeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhh
Confidence            56899999999988766565543 4799999999999999876532100000                        0011


Q ss_pred             cEEEEeCCcccc---cCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          122 NISVVRTNSMKY---IPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       122 nv~~~~~da~~~---l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      ...++.+|+...   ....+.++++|.|+..|.-.+.....    -....++++++++|||||.|++.+.
T Consensus       134 ~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~----~~~~~~l~~~~~~LkPGG~li~~~~  199 (263)
T d2g72a1         134 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDL----ASFQRALDHITTLLRPGGHLLLIGA  199 (263)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSH----HHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred             hhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCH----HHHHHHHHHHHHHcCCCCEEEEecc
Confidence            234555665421   11224457899999887543321100    0123589999999999999998763

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=1.2e-10  Score=92.72  Aligned_cols=105  Identities=17%  Similarity=0.217  Sum_probs=82.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||++||+|.++++.+.+.. ..+++||.++.+++.+++++...      +..|+.++.+|+...+..  ....+|.
T Consensus        44 ~~~vLDlfaGsG~~giealsrGa-~~v~~VE~~~~a~~~~k~N~~~~------~~~~~~ii~~d~~~~l~~--~~~~fDl  114 (183)
T d2fpoa1          44 DAQCLDCFAGSGALGLEALSRYA-AGATLIEMDRAVSQQLIKNLATL------KAGNARVVNSNAMSFLAQ--KGTPHNI  114 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHT------TCCSEEEECSCHHHHHSS--CCCCEEE
T ss_pred             hhhhhhhhccccceeeeEEecCc-ceeEEEEEeechhhHHHHHHhhc------cccceeeeeecccccccc--cccccCE
Confidence            44899999999999999998864 37999999999999999998664      677899999999876643  3568999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITD  188 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td  188 (252)
                      |++..|  +.+ .      .....+..+..  +|+++|.+++.++
T Consensus       115 If~DPP--Y~~-~------~~~~~l~~l~~~~~L~~~~iIiiE~~  150 (183)
T d2fpoa1         115 VFVDPP--FRR-G------LLEETINLLEDNGWLADEALIYVESE  150 (183)
T ss_dssp             EEECCS--SST-T------THHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             EEEcCc--ccc-c------hHHHHHHHHHHCCCCCCCeEEEEEec
Confidence            998654  221 1      12346666654  5999999998764

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.14  E-value=2.7e-10  Score=96.03  Aligned_cols=128  Identities=12%  Similarity=0.143  Sum_probs=86.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...+||+|||+|..++.+|+ +|+..++|+|+|+.+++.|++|+...      +.. ++.+..+|..+.+..  ..+.+|
T Consensus       111 ~~~vld~g~GsG~i~~~la~-~~~~~v~a~Dis~~Al~~A~~Na~~~------~~~~~~~i~~~~~~~~~~~--~~~~fD  181 (271)
T d1nv8a_         111 IKTVADIGTGSGAIGVSVAK-FSDAIVFATDVSSKAVEIARKNAERH------GVSDRFFVRKGEFLEPFKE--KFASIE  181 (271)
T ss_dssp             CCEEEEESCTTSHHHHHHHH-HSSCEEEEEESCHHHHHHHHHHHHHT------TCTTSEEEEESSTTGGGGG--GTTTCC
T ss_pred             ccEEEEeeeeeehhhhhhhh-cccceeeechhhhhHHHHHHHHHHHc------CCCceeEEeeccccccccc--ccCccc
Confidence            45899999999999999985 58999999999999999999998764      554 477788887643332  246899


Q ss_pred             EEEEeCC-----CCccc-cccccccc-cC----HHHH-HHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcC
Q 025470          145 KMFFLFP-----DPHFK-EKNHRRRV-IS----PHLL-DEYAYVLGVGGIIYTITDVEELGDWMRSCLENH  203 (252)
Q Consensus       145 ~i~~~fp-----dP~~k-~~h~krr~-~~----~~~l-~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~  203 (252)
                      .|+.|.|     +..++ .+|..+.. ..    -.++ +.+.+.|+|||.+++-.+. +..+.+.+.+.+.
T Consensus       182 lIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~G~l~~Eig~-~Q~~~v~~l~~~~  251 (271)
T d1nv8a_         182 MILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEIGE-DQVEELKKIVSDT  251 (271)
T ss_dssp             EEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEECCT-TCHHHHTTTSTTC
T ss_pred             EEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCCCEEEEEECH-HHHHHHHHHHHhC
Confidence            9999976     11010 01111110 00    1122 3356889999999998763 4444444444433

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=6.7e-11  Score=96.90  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=83.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC---CC
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF---EK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~---~~  140 (252)
                      ...|||||||+|..++.+|...| +..++.+|+++...+.|++++...      ++ +++.++.+|+.+.++..+   .+
T Consensus        60 ~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a------g~~~~i~~~~Gda~e~l~~~~~~~~~  133 (219)
T d2avda1          60 AKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA------EAEHKIDLRLKPALETLDELLAAGEA  133 (219)
T ss_dssp             CCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT------TCTTTEEEEESCHHHHHHHHHHTTCT
T ss_pred             CCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc------CccceEEEEEeehhhcchhhhhhccc
Confidence            34899999999999999999876 689999999999999999888764      44 459999999987665432   35


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      +++|.|++..   + |.       -...+++.+.+.|+|||.+++
T Consensus       134 ~~fD~ifiD~---d-k~-------~y~~~~~~~~~lL~~GGvii~  167 (219)
T d2avda1         134 GTFDVAVVDA---D-KE-------NCSAYYERCLQLLRPGGILAV  167 (219)
T ss_dssp             TCEEEEEECS---C-ST-------THHHHHHHHHHHEEEEEEEEE
T ss_pred             CCccEEEEeC---C-HH-------HHHHHHHHHHHHhcCCcEEEE
Confidence            6899999853   1 11       134688999999999999987

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.12  E-value=1.3e-10  Score=91.55  Aligned_cols=104  Identities=16%  Similarity=0.184  Sum_probs=71.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCc-cCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPN-YFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~-~~~~~s~d  144 (252)
                      +..|||+|||+|.++++.+.+  ++.++++|+++.+++.+++++...      ++.+ ++...++...+.. ......+|
T Consensus        42 g~~vLDl~~G~G~~~i~a~~~--ga~vv~vD~~~~a~~~~~~N~~~~------~~~~-~v~~~~~d~~~~~~~~~~~~fD  112 (171)
T d1ws6a1          42 RGRFLDPFAGSGAVGLEAASE--GWEAVLVEKDPEAVRLLKENVRRT------GLGA-RVVALPVEVFLPEAKAQGERFT  112 (171)
T ss_dssp             CCEEEEETCSSCHHHHHHHHT--TCEEEEECCCHHHHHHHHHHHHHH------TCCC-EEECSCHHHHHHHHHHTTCCEE
T ss_pred             CCeEEEeccccchhhhhhhhc--cchhhhcccCHHHHhhhhHHHHhh------cccc-ceeeeehhcccccccccCCccc
Confidence            458999999999999998887  567899999999999999998775      4432 4455554322221 23356799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHH--HhhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYA--YVLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~--~~LkpgG~l~~~td  188 (252)
                      .|+++.|   +....       ...+..+.  .+|+|||.+++.++
T Consensus       113 ~If~DPP---Y~~~~-------~~~l~~l~~~~ll~~~g~ivie~~  148 (171)
T d1ws6a1         113 VAFMAPP---YAMDL-------AALFGELLASGLVEAGGLYVLQHP  148 (171)
T ss_dssp             EEEECCC---TTSCT-------THHHHHHHHHTCEEEEEEEEEEEE
T ss_pred             eeEEccc---cccCH-------HHHHHHHHHcCCcCCCeEEEEEec
Confidence            9988644   22111       12344332  47999999988664

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=99.09  E-value=2.5e-10  Score=93.87  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=84.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEEeCCcccccCccC----C
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVVRTNSMKYIPNYF----E  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~~~da~~~l~~~~----~  139 (252)
                      ...||||||+.|..++.+|+..| +..++.+|+++...+.|++++...      +. +++.++.+|+.+.++...    .
T Consensus        60 ~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~------g~~~~i~~~~g~a~~~L~~l~~~~~~  133 (227)
T d1susa1          60 AKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA------GVDHKIDFREGPALPVLDEMIKDEKN  133 (227)
T ss_dssp             CCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT------TCGGGEEEEESCHHHHHHHHHHCGGG
T ss_pred             CCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh------ccccceeeeehHHHHHHHHHHhcccc
Confidence            34899999999999999999876 689999999999999999988764      44 469999999987776432    2


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYT  185 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~  185 (252)
                      .+.||.|++..   +.  .      -...+++.+.+.|+|||.+++
T Consensus       134 ~~~fD~iFiDa---~k--~------~y~~~~e~~~~ll~~gGiii~  168 (227)
T d1susa1         134 HGSYDFIFVDA---DK--D------NYLNYHKRLIDLVKVGGVIGY  168 (227)
T ss_dssp             TTCBSEEEECS---CS--T------THHHHHHHHHHHBCTTCCEEE
T ss_pred             CCceeEEEecc---ch--h------hhHHHHHHHHhhcCCCcEEEE
Confidence            46899999953   21  1      134699999999999999987

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.05  E-value=3.5e-10  Score=89.96  Aligned_cols=108  Identities=19%  Similarity=0.189  Sum_probs=81.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-CCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-EKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-~~~s~d  144 (252)
                      +..|||++||+|.++++.+.+.. ..+++||.++.+++.+++++...     ....++.++++|+...+.... ....+|
T Consensus        42 ~~~vLDlfaGsG~~g~ea~srGa-~~v~~ve~~~~a~~~~~~N~~~~-----~~~~~~~i~~~D~~~~l~~~~~~~~~fD  115 (182)
T d2fhpa1          42 GGMALDLYSGSGGLAIEAVSRGM-DKSICIEKNFAALKVIKENIAIT-----KEPEKFEVRKMDANRALEQFYEEKLQFD  115 (182)
T ss_dssp             SCEEEETTCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHHHHH-----TCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCEEEEcccccccccceeeecch-hHHHHHHHHHHHHHHHHHHhhhh-----hcccccccccccchhhhhhhcccCCCcc
Confidence            45899999999999999999853 37999999999999999998776     234589999999986554322 245799


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITD  188 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td  188 (252)
                      .|++..|   +....      ....+..+..  +|+++|.+++.++
T Consensus       116 lIflDPP---Y~~~~------~~~~l~~i~~~~~L~~~giIi~E~~  152 (182)
T d2fhpa1         116 LVLLDPP---YAKQE------IVSQLEKMLERQLLTNEAVIVCETD  152 (182)
T ss_dssp             EEEECCC---GGGCC------HHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred             eEEechh---hhhhH------HHHHHHHHHHCCCCCCCEEEEEEcC
Confidence            9987543   32211      1346777654  6999999998764

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.04  E-value=1.3e-09  Score=87.91  Aligned_cols=101  Identities=16%  Similarity=0.182  Sum_probs=71.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|.+++.++.+. ...++|||+++.+++.|++++...      + .++.++.+|+.. +     +..+|.
T Consensus        47 g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~~~------~-~~~~~~~~d~~~-~-----~~~fD~  112 (201)
T d1wy7a1          47 GKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLGEF------K-GKFKVFIGDVSE-F-----NSRVDI  112 (201)
T ss_dssp             TCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTGGG------T-TSEEEEESCGGG-C-----CCCCSE
T ss_pred             CCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHHHc------C-CCceEEECchhh-h-----CCcCcE
Confidence            5689999999999999888764 358999999999999998886443      3 357899999863 2     457999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++|.|--+. ..+     ....++.   ..+.+++.++.....
T Consensus       113 Vi~nPP~~~~-~~~-----~d~~~l~---~~~~~~~~v~~ih~~  147 (201)
T d1wy7a1         113 VIMNPPFGSQ-RKH-----ADRPFLL---KAFEISDVVYSIHLA  147 (201)
T ss_dssp             EEECCCCSSS-STT-----TTHHHHH---HHHHHCSEEEEEEEC
T ss_pred             EEEcCccccc-ccc-----ccHHHHH---HHHhhcccchhcccc
Confidence            9998764321 111     2234444   344556666665433

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.03  E-value=7.4e-10  Score=94.35  Aligned_cols=128  Identities=15%  Similarity=0.093  Sum_probs=94.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||-||.|.|..+..+++..|...+++||+++.+++.|++.+.....  ...-+++.++.+|+.+.+..  .+..+|.|
T Consensus        91 k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~--~~~d~rv~v~~~Da~~~l~~--~~~~yDvI  166 (295)
T d1inla_          91 KKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSC--GFDDPRAEIVIANGAEYVRK--FKNEFDVI  166 (295)
T ss_dssp             CEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHGGG--CSSCEEEE
T ss_pred             ceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcc--cccCCCcEEEhhhHHHHHhc--CCCCCCEE
Confidence            489999999999999999887788999999999999999876543311  11246899999999987764  35789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHh
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLE  201 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~  201 (252)
                      ++..+||+..   .-.++.+.+|++.+.+.|+|||.+++.+.+.    .....+.+.+.
T Consensus       167 i~D~~dp~~~---~~~~L~t~efy~~~~~~L~~~Gi~v~q~~sp~~~~~~~~~i~~tl~  222 (295)
T d1inla_         167 IIDSTDPTAG---QGGHLFTEEFYQACYDALKEDGVFSAETEDPFYDIGWFKLAYRRIS  222 (295)
T ss_dssp             EEEC-------------CCSHHHHHHHHHHEEEEEEEEEECCCTTTTHHHHHHHHHHHH
T ss_pred             EEcCCCCCcC---chhhhccHHHHHHHHhhcCCCcEEEEecCChhhhhHHHHHHHHHHH
Confidence            9999998732   2235778899999999999999999987653    33344444443

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.99  E-value=7.2e-10  Score=93.72  Aligned_cols=115  Identities=17%  Similarity=0.134  Sum_probs=87.3

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHh----hcCCCCcccEEEEeCCcccccCccCCCCc
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALR----VSNPGQYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~----~~~~~~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      ..||.||+|.|..+..+++ ++...+++||+++.+++.|++.+....    ......-++++++.+|+...+..   ...
T Consensus        74 ~~vLiiG~G~G~~~~~~l~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~---~~~  149 (276)
T d1mjfa_          74 KRVLVIGGGDGGTVREVLQ-HDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN---NRG  149 (276)
T ss_dssp             CEEEEEECTTSHHHHHHTT-SCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH---CCC
T ss_pred             ceEEEecCCchHHHHHHHH-hCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc---cCC
Confidence            4899999999999988876 456789999999999998876432100    00012346899999999876653   568


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      +|.|++..++|..    .-..+.+.+|++.+.+.|+|||.+++.+.+
T Consensus       150 yDvIi~D~~~~~~----~~~~L~t~eF~~~~~~~L~~~Gv~v~q~~s  192 (276)
T d1mjfa_         150 FDVIIADSTDPVG----PAKVLFSEEFYRYVYDALNNPGIYVTQAGS  192 (276)
T ss_dssp             EEEEEEECCCCC---------TTSHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred             CCEEEEeCCCCCC----CcccccCHHHHHhhHhhcCCCceEEEecCC
Confidence            9999999988863    234677889999999999999999987654

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.97  E-value=9.9e-10  Score=88.28  Aligned_cols=94  Identities=17%  Similarity=0.182  Sum_probs=65.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||+|||+|.+++.++...+ ..++|||+++.+++.|++|           ..++.++++|+.+ +     ++.+|.
T Consensus        49 Gk~VLDlGcGtG~l~i~a~~~ga-~~V~~vDid~~a~~~ar~N-----------~~~~~~~~~D~~~-l-----~~~fD~  110 (197)
T d1ne2a_          49 GRSVIDAGTGNGILACGSYLLGA-ESVTAFDIDPDAIETAKRN-----------CGGVNFMVADVSE-I-----SGKYDT  110 (197)
T ss_dssp             TSEEEEETCTTCHHHHHHHHTTB-SEEEEEESCHHHHHHHHHH-----------CTTSEEEECCGGG-C-----CCCEEE
T ss_pred             CCEEEEeCCCCcHHHHHHHHcCC-CcccccccCHHHHHHHHHc-----------cccccEEEEehhh-c-----CCcceE
Confidence            56899999999999988888754 4799999999999888764           3478899999863 3     467999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |+.|.|--. +.+|.     ...|++..   +..++.++..
T Consensus       111 Vi~NPPfg~-~~~~~-----D~~fl~~a---~~~~~~iy~i  142 (197)
T d1ne2a_         111 WIMNPPFGS-VVKHS-----DRAFIDKA---FETSMWIYSI  142 (197)
T ss_dssp             EEECCCC-------------CHHHHHHH---HHHEEEEEEE
T ss_pred             EEeCcccch-hhhhc-----hHHHHHHH---HhcCCeEEEe
Confidence            999866322 12232     23455544   4445555543

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=98.97  E-value=1.7e-09  Score=91.24  Aligned_cols=128  Identities=16%  Similarity=0.149  Sum_probs=101.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||-||-|.|..+..+.+..+...++.|||++.+++.|++.+....  ....-+++.++.+|+...+..  .+..+|.|
T Consensus        77 ~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~--~~~~d~r~~i~~~D~~~~l~~--~~~~yDvI  152 (274)
T d1iy9a_          77 EHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIA--GKLDDPRVDVQVDDGFMHIAK--SENQYDVI  152 (274)
T ss_dssp             CEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHH--TTTTSTTEEEEESCSHHHHHT--CCSCEEEE
T ss_pred             ceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhc--ccccCCCeEEEechHHHHHhh--cCCCCCEE
Confidence            48999999999999999988777899999999999999987664431  112456899999999877764  36789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~  202 (252)
                      ++..++|+.-    ...+.+.+|++.+.+.|+|||.++..+.+    ......+.+.+.+
T Consensus       153 i~D~~~p~~~----~~~L~t~eFy~~~~~~L~~~Gv~v~q~~s~~~~~~~~~~i~~tl~~  208 (274)
T d1iy9a_         153 MVDSTEPVGP----AVNLFTKGFYAGIAKALKEDGIFVAQTDNPWFTPELITNVQRDVKE  208 (274)
T ss_dssp             EESCSSCCSC----CCCCSTTHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHT
T ss_pred             EEcCCCCCCc----chhhccHHHHHHHHhhcCCCceEEEecCCccccHHHHHHHHHhhhh
Confidence            9999998742    23477889999999999999999998754    3444555666654

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=7.7e-09  Score=89.98  Aligned_cols=116  Identities=16%  Similarity=0.195  Sum_probs=91.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC-CCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF-EKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~-~~~s~d  144 (252)
                      ...|||+-||.|.+++.||+.  ...|+|||+++.+++.|+.++..      +++.|+.|+.+|+.+.+.... ....+|
T Consensus       213 ~~~vlDLycG~G~fsl~La~~--~~~V~gvE~~~~ai~~A~~na~~------n~i~n~~~~~~~~~~~~~~~~~~~~~~d  284 (358)
T d1uwva2         213 EDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNARL------NGLQNVTFYHENLEEDVTKQPWAKNGFD  284 (358)
T ss_dssp             TCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH------TTCCSEEEEECCTTSCCSSSGGGTTCCS
T ss_pred             CceEEEecccccccchhcccc--ccEEEeccCcHHHHHHHHHhHHh------cccccceeeecchhhhhhhhhhhhccCc
Confidence            458999999999999999998  56899999999999999988765      489999999999876554322 246689


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      .|++..|-.=           ....++.+.+. +|.-.+|++.|...++..+...+.
T Consensus       285 ~vilDPPR~G-----------~~~~~~~l~~~-~~~~ivYVSCnp~TlaRDl~~l~~  329 (358)
T d1uwva2         285 KVLLDPARAG-----------AAGVMQQIIKL-EPIRIVYVSCNPATLARDSEALLK  329 (358)
T ss_dssp             EEEECCCTTC-----------CHHHHHHHHHH-CCSEEEEEESCHHHHHHHHHHHHH
T ss_pred             eEEeCCCCcc-----------HHHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHHH
Confidence            9988655221           12467777664 788899999999888888776554

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.93  E-value=3.6e-09  Score=89.92  Aligned_cols=129  Identities=16%  Similarity=0.187  Sum_probs=101.9

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||-||-|.|..+..+.+..|...+++||+++.+++.|++.+.....  ...-+++.++.+|+.+.+.. ..++.+|.|
T Consensus        82 k~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~--~~~~~r~~i~~~Da~~~l~~-~~~~~yDvI  158 (290)
T d1xj5a_          82 KKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI--GYEDPRVNLVIGDGVAFLKN-AAEGSYDAV  158 (290)
T ss_dssp             CEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGSTTEEEEESCHHHHHHT-SCTTCEEEE
T ss_pred             cceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc--cccCCCcEEEEccHHHHHhh-ccccCccEE
Confidence            489999999999999999887777999999999999999876543311  12356899999999877743 345689999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc----hHHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV----EELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~----~~~~~~~~~~~~~  202 (252)
                      ++..+||+.    .-..+.+.+|++.+.+.|+|||.+++.+.+    .+.+..+.+.+.+
T Consensus       159 i~D~~dp~~----~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~  214 (290)
T d1xj5a_         159 IVDSSDPIG----PAKELFEKPFFQSVARALRPGGVVCTQAESLWLHMDIIEDIVSNCRE  214 (290)
T ss_dssp             EECCCCTTS----GGGGGGSHHHHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH
T ss_pred             EEcCCCCCC----cchhhCCHHHHHHHHHhcCCCcEEEEecCCcHHHHHHHHHHHhhhhh
Confidence            999999873    235678899999999999999999998764    3445555555543

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=2.2e-09  Score=91.02  Aligned_cols=128  Identities=13%  Similarity=0.167  Sum_probs=92.6

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||-||-|.|..+..+.+..+..++++||+++.+++.|++.+.....  ...-+++.++.+|+...+..  .++.+|.|
T Consensus        80 k~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~--~~~d~rv~i~~~Da~~~l~~--~~~~yDvI  155 (285)
T d2o07a1          80 RKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAI--GYSSSKLTLHVGDGFEFMKQ--NQDAFDVI  155 (285)
T ss_dssp             CEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG--GGGCTTEEEEESCHHHHHHT--CSSCEEEE
T ss_pred             CeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhcc--ccCCCCceEEEccHHHHHhc--CCCCCCEE
Confidence            479999999999999999877788999999999999999876643211  12346899999999887764  35789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~  202 (252)
                      ++..++|...    -..+.+.+|++.+.+.|+|||.+++.+...    .....+...+.+
T Consensus       156 i~D~~~p~~~----~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~~~~tl~~  211 (285)
T d2o07a1         156 ITDSSDPMGP----AESLFKESYYQLMKTALKEDGVLCCQGECQWLHLDLIKEMRQFCQS  211 (285)
T ss_dssp             EEECC---------------CHHHHHHHHHEEEEEEEEEEEECTTTCHHHHHHHHHHHHH
T ss_pred             EEcCCCCCCc----ccccccHHHHHHHHHhcCCCCeEEEeccchhhhHHHHHHHHHHHHh
Confidence            9999888632    345678899999999999999999987442    333444444443

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=98.88  E-value=1.6e-09  Score=92.84  Aligned_cols=128  Identities=13%  Similarity=0.120  Sum_probs=90.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..||-||-|.|..+..+.+..+..+++.||+++.+++.|++-+....  ....-+++.++.+|+...+..  .+..+|.|
T Consensus       108 k~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~--~~~~dprv~i~i~Da~~~l~~--~~~~yDvI  183 (312)
T d2b2ca1         108 KRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMS--CGFSHPKLDLFCGDGFEFLKN--HKNEFDVI  183 (312)
T ss_dssp             CEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTS--GGGGCTTEEEECSCHHHHHHH--CTTCEEEE
T ss_pred             CeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhc--cccCCCCeEEEEchHHHHHHh--CCCCCCEE
Confidence            47999999999999999988777799999999999998886543210  001236899999999987753  36789999


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhc
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLEN  202 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~  202 (252)
                      ++..++|..    .-..+.+.+|++.+.+.|+|||.++..+.+.    +....+.+.+.+
T Consensus       184 I~D~~dp~~----~~~~L~t~eFy~~~~~~L~~~Gi~v~q~~s~~~~~~~~~~i~~~l~~  239 (312)
T d2b2ca1         184 ITDSSDPVG----PAESLFGQSYYELLRDALKEDGILSSQGESVWLHLPLIAHLVAFNRK  239 (312)
T ss_dssp             EECCC-----------------HHHHHHHHEEEEEEEEEECCCTTTCHHHHHHHHHHHHH
T ss_pred             EEcCCCCCC----cchhhhhHHHHHHHHhhcCCCcEEEEecCChHHhHHHHHHHHHHhhh
Confidence            999988853    2345778899999999999999999987543    344555555543

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.84  E-value=3.8e-09  Score=87.62  Aligned_cols=143  Identities=18%  Similarity=0.162  Sum_probs=90.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.+++.+++++|+.+++.+|+- ..++            .....++++++.+|..+.    ++.  .|.
T Consensus        82 ~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~------------~~~~~~ri~~~~gd~~~~----~p~--~D~  142 (244)
T d1fp1d2          82 ISTLVDVGGGSGRNLELIISKYPLIKGINFDLP-QVIE------------NAPPLSGIEHVGGDMFAS----VPQ--GDA  142 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHT------------TCCCCTTEEEEECCTTTC----CCC--EEE
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEecch-hhhh------------ccCCCCCeEEecCCcccc----ccc--ceE
Confidence            458999999999999999999999999999973 3322            123467899999997532    332  377


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc------hHHHHHHHHHHhcCCCcccccccccccCc
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV------EELGDWMRSCLENHPMFEALTKEELEADP  218 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  218 (252)
                      +++..-- -|+.+       ....+|+.+++.|+|||+|++....      ..........+.-. .+...     .   
T Consensus       143 ~~l~~vLh~~~de-------~~~~iL~~~~~aL~pgg~llI~e~v~~~~~~~~~~~~~~~~~d~~-m~~~~-----~---  206 (244)
T d1fp1d2         143 MILKAVCHNWSDE-------KCIEFLSNCHKALSPNGKVIIVEFILPEEPNTSEESKLVSTLDNL-MFITV-----G---  206 (244)
T ss_dssp             EEEESSGGGSCHH-------HHHHHHHHHHHHEEEEEEEEEEEEEECSSCCSSHHHHHHHHHHHH-HHHHH-----S---
T ss_pred             EEEehhhhhCCHH-------HHHHHHHHHHHHcCCCcEEEEEEEEecCCCCCchHHHHHHHHHHH-HHhhC-----C---
Confidence            7764311 12211       1236999999999999999986521      01111111111000 00000     0   


Q ss_pred             cccCCCCCCHHHHHHHHcCCCeEEEEE
Q 025470          219 VVKLLSSATEEGQKVARNGGQTFQAVF  245 (252)
Q Consensus       219 ~~~~~~~~t~~e~~~~~~G~~i~~~~~  245 (252)
                      ..  .++..+|+....++|.+...++-
T Consensus       207 g~--ert~~e~~~ll~~AGF~~v~v~~  231 (244)
T d1fp1d2         207 GR--ERTEKQYEKLSKLSGFSKFQVAC  231 (244)
T ss_dssp             CC--CEEHHHHHHHHHHTTCSEEEEEE
T ss_pred             Cc--CCCHHHHHHHHHHcCCCceEEEe
Confidence            10  02445899999999999887653

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.82  E-value=8.8e-09  Score=88.60  Aligned_cols=127  Identities=9%  Similarity=0.135  Sum_probs=86.4

Q ss_pred             CceEEEEcCcccHHHHHHHHH-----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~  140 (252)
                      ...|||.|||+|.+++.++..     .+...++|+|+++.+++.|+.++...       ..+..+.++|...    ..+.
T Consensus       118 ~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~-------~~~~~~~~~d~~~----~~~~  186 (328)
T d2f8la1         118 NVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ-------RQKMTLLHQDGLA----NLLV  186 (328)
T ss_dssp             EEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH-------TCCCEEEESCTTS----CCCC
T ss_pred             CCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh-------hhhhhhhcccccc----cccc
Confidence            458999999999999998764     34567999999999999888766543       2345677777542    2345


Q ss_pred             CcccEEEEeCCCCccccc----------cccccccCHHHHHHHHHhhcCCcEEEEEeCch----HHHHHHHHHHhcC
Q 025470          141 GQLTKMFFLFPDPHFKEK----------NHRRRVISPHLLDEYAYVLGVGGIIYTITDVE----ELGDWMRSCLENH  203 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~----------h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~----~~~~~~~~~~~~~  203 (252)
                      ..+|.|+.|.|--.....          ...+.-....|+..+.+.|+|||++.+.+...    .....+.+.+..+
T Consensus       187 ~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p~~~l~~~~~~~lR~~L~~~  263 (328)
T d2f8la1         187 DPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKN  263 (328)
T ss_dssp             CCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEEGGGGGSTTHHHHHHHHHHH
T ss_pred             ccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEecCccccCchhHHHHHHHHhC
Confidence            789999999874211100          01111123458999999999999998887643    2344455555444

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.81  E-value=1.1e-08  Score=84.31  Aligned_cols=73  Identities=21%  Similarity=0.345  Sum_probs=58.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      +..|||||||.|.++..|++.  ...++|||+++.+++.++++.        .+.+|+.++++|+.. ++  ++...-..
T Consensus        22 ~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~--------~~~~n~~i~~~D~l~-~~--~~~~~~~~   88 (235)
T d1qama_          22 HDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKL--------VDHDNFQVLNKDILQ-FK--FPKNQSYK   88 (235)
T ss_dssp             TCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHT--------TTCCSEEEECCCGGG-CC--CCSSCCCE
T ss_pred             CCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHh--------hcccchhhhhhhhhh-cc--ccccccce
Confidence            568999999999999999998  468999999999988776543        256799999999974 33  33444446


Q ss_pred             EEEeCC
Q 025470          146 MFFLFP  151 (252)
Q Consensus       146 i~~~fp  151 (252)
                      |+.|.|
T Consensus        89 vv~NLP   94 (235)
T d1qama_          89 IFGNIP   94 (235)
T ss_dssp             EEEECC
T ss_pred             eeeeeh
Confidence            778876

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.76  E-value=1.6e-08  Score=81.68  Aligned_cols=100  Identities=18%  Similarity=0.210  Sum_probs=81.7

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      ..++|||||.|--++-+|-.+|+..++.+|.+..-+...+.-+..+      ++.|+.+++..+.+ +   .....+|.|
T Consensus        67 ~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L------~L~nv~v~~~R~E~-~---~~~~~fD~V  136 (207)
T d1jsxa_          67 ERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL------KLENIEPVQSRVEE-F---PSEPPFDGV  136 (207)
T ss_dssp             SEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT------TCSSEEEEECCTTT-S---CCCSCEEEE
T ss_pred             CceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHc------CCcceeeeccchhh-h---cccccccee
Confidence            4799999999999999999999999999999999988888766665      88999999999874 2   235578888


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      ..---.|.            ..+++.+...|++||.+++---
T Consensus       137 ~sRA~~~~------------~~ll~~~~~~l~~~g~~~~~KG  166 (207)
T d1jsxa_         137 ISRAFASL------------NDMVSWCHHLPGEQGRFYALKG  166 (207)
T ss_dssp             ECSCSSSH------------HHHHHHHTTSEEEEEEEEEEES
T ss_pred             hhhhhcCH------------HHHHHHHHHhcCCCcEEEEECC
Confidence            75321222            2588999999999999988753

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.72  E-value=2.6e-09  Score=88.51  Aligned_cols=95  Identities=18%  Similarity=0.290  Sum_probs=67.4

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.+++.+++++|+.+++++|+-.. ++            .....+++.++.+|..+.+    |.+  |.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i~------------~~~~~~r~~~~~~d~~~~~----P~a--d~  142 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-IE------------DAPSYPGVEHVGGDMFVSI----PKA--DA  142 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-TT------------TCCCCTTEEEEECCTTTCC----CCC--SC
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-hh------------hcccCCceEEecccccccC----CCc--ce
Confidence            34899999999999999999999999999998543 21            1134578999999975433    332  33


Q ss_pred             EEE-eCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFF-LFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~-~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +++ +.---|....       ...+|+.+++.|+|||++.+.
T Consensus       143 ~~l~~vlh~~~d~~-------~~~iL~~~~~al~pgg~~li~  177 (243)
T d1kyza2         143 VFMKWICHDWSDEH-------CLKFLKNCYEALPDNGKVIVA  177 (243)
T ss_dssp             EECSSSSTTSCHHH-------HHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEEEeecCCHHH-------HHHHHHHHHHhcCCCceEEEE
Confidence            332 2222232211       235999999999999999885

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.70  E-value=1.6e-08  Score=83.67  Aligned_cols=142  Identities=15%  Similarity=0.126  Sum_probs=87.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..+++++|+.++++.|+- ..++.            ....++|+++.+|..+.    .+  ..|.
T Consensus        81 ~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp-~vi~~------------~~~~~rv~~~~gD~f~~----~p--~aD~  141 (244)
T d1fp2a2          81 LESIVDVGGGTGTTAKIICETFPKLKCIVFDRP-QVVEN------------LSGSNNLTYVGGDMFTS----IP--NADA  141 (244)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTTCEEEEEECH-HHHTT------------CCCBTTEEEEECCTTTC----CC--CCSE
T ss_pred             ceEEEEecCCccHHHHHHHHhCCCCeEEEecCH-HHHHh------------CcccCceEEEecCcccC----CC--CCcE
Confidence            347999999999999999999999999999983 33221            13457899999997532    22  3577


Q ss_pred             EEEeCCC-CccccccccccccCHHHHHHHHHhhcCC---cEEEEEeCc-----hHHHHHHHHHHhcCCCccccccccccc
Q 025470          146 MFFLFPD-PHFKEKNHRRRVISPHLLDEYAYVLGVG---GIIYTITDV-----EELGDWMRSCLENHPMFEALTKEELEA  216 (252)
Q Consensus       146 i~~~fpd-P~~k~~h~krr~~~~~~l~~~~~~Lkpg---G~l~~~td~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (252)
                      +++..-- -|..+       ....+|+.+++.|+||   |++++.-..     ..-.......+-.   +....   ...
T Consensus       142 ~~l~~vLHdw~d~-------~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~~~~~~~~~~~~~d---l~m~~---~~G  208 (244)
T d1fp2a2         142 VLLKYILHNWTDK-------DCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKKDENQVTQIKLLMD---VNMAC---LNG  208 (244)
T ss_dssp             EEEESCGGGSCHH-------HHHHHHHHHHHHHSGGGCCCEEEEEECEECTTTSCHHHHHHHHHHH---HHGGG---GTC
T ss_pred             EEEEeecccCChH-------HHHHHHHHHHHHcCcccCCcEEEEEEeecCCCCCCchHHHHHHHHH---HHHHh---CCC
Confidence            7764321 12211       1235999999999998   667665311     1111111111100   00000   001


Q ss_pred             CccccCCCCCCHHHHHHHHcCCCeEEEE
Q 025470          217 DPVVKLLSSATEEGQKVARNGGQTFQAV  244 (252)
Q Consensus       217 ~p~~~~~~~~t~~e~~~~~~G~~i~~~~  244 (252)
                      .     .++..+|++...++|.++..+.
T Consensus       209 ~-----ert~~e~~~ll~~AGf~~~~i~  231 (244)
T d1fp2a2         209 K-----ERNEEEWKKLFIEAGFQHYKIS  231 (244)
T ss_dssp             C-----CEEHHHHHHHHHHTTCCEEEEE
T ss_pred             c-----CCCHHHHHHHHHHcCCceEEEE
Confidence            0     1345689999999999988764

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.69  E-value=5.4e-08  Score=76.94  Aligned_cols=110  Identities=16%  Similarity=0.209  Sum_probs=80.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||+.||+|.++++.+.+.. ..++.||.+..+++..++++..+.    .......++..|+...+........+|.
T Consensus        44 ~~~vLDlFaGsG~~glEalSRGA-~~v~fVE~~~~a~~~ik~Ni~~l~----~~~~~~~~~~~d~~~~l~~~~~~~~fDl  118 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQA-KKVTFLELDKTVANQLKKNLQTLK----CSSEQAEVINQSSLDFLKQPQNQPHFDV  118 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTTC-SEEEEECSCHHHHHHHHHHHHHTT----CCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             cceEeecccCccceeeeeeeecc-eeeEEeecccchhhhHhhHHhhhc----ccccccccccccccccccccccCCcccE
Confidence            34899999999999999999964 489999999999999999987651    1223477788887655543334557999


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHH--hhcCCcEEEEEeCc
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAY--VLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~--~LkpgG~l~~~td~  189 (252)
                      |++..|   +...      .....+..+..  +|+++|.+++-++.
T Consensus       119 IFlDPP---Y~~~------~~~~~l~~l~~~~~L~~~~liiiE~~~  155 (183)
T d2ifta1         119 VFLDPP---FHFN------LAEQAISLLCENNWLKPNALIYVETEK  155 (183)
T ss_dssp             EEECCC---SSSC------HHHHHHHHHHHTTCEEEEEEEEEEEES
T ss_pred             EEechh---Hhhh------hHHHHHHHHHHhCCcCCCcEEEEEecC
Confidence            987544   3221      12346676654  69999999997643

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=98.62  E-value=1.2e-07  Score=77.97  Aligned_cols=103  Identities=13%  Similarity=0.127  Sum_probs=83.0

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc-CCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY-FEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~-~~~~s~d  144 (252)
                      ...++|||+|.|-=++-+|-.+|+.+++-+|.+..-+...+.-+..+      ++.|+.+++..+.+ +... -....+|
T Consensus        71 ~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L------~L~n~~i~~~R~E~-~~~~~~~~~~~D  143 (239)
T d1xdza_          71 VNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL------QLENTTFCHDRAET-FGQRKDVRESYD  143 (239)
T ss_dssp             CCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH------TCSSEEEEESCHHH-HTTCTTTTTCEE
T ss_pred             CCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh------CCCCcEEEeehhhh-ccccccccccce
Confidence            34799999999999999999999999999999999888887777776      89999999999874 3211 1145789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .|..---.+.            ..+++.....|++||.+++--
T Consensus       144 ~v~sRAva~l------------~~ll~~~~~~l~~~g~~i~~K  174 (239)
T d1xdza_         144 IVTARAVARL------------SVLSELCLPLVKKNGLFVALK  174 (239)
T ss_dssp             EEEEECCSCH------------HHHHHHHGGGEEEEEEEEEEE
T ss_pred             EEEEhhhhCH------------HHHHHHHhhhcccCCEEEEEC
Confidence            8886432333            259999999999999988854

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=5.5e-08  Score=82.19  Aligned_cols=137  Identities=15%  Similarity=0.189  Sum_probs=95.7

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ++..|||+++|.|.=+..+|....+..++++|+++..+....+++..+      +..|+.....|..  .........+|
T Consensus       102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~------g~~~~~~~~~~~~--~~~~~~~~~fd  173 (284)
T d1sqga2         102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL------GMKATVKQGDGRY--PSQWCGEQQFD  173 (284)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT------TCCCEEEECCTTC--THHHHTTCCEE
T ss_pred             ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcc------cccceeeeccccc--cchhccccccc
Confidence            356999999999999999999987788999999999998888887665      7888877776653  22233467899


Q ss_pred             EEEEeCCC---------Cccccccccc-----cccCHHHHHHHHHhhcCCcEEEEEe--CchHHHHHHHHH-HhcCCCcc
Q 025470          145 KMFFLFPD---------PHFKEKNHRR-----RVISPHLLDEYAYVLGVGGIIYTIT--DVEELGDWMRSC-LENHPMFE  207 (252)
Q Consensus       145 ~i~~~fpd---------P~~k~~h~kr-----r~~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~~~~-~~~~~~~~  207 (252)
                      .|.+.-|.         |..+.+....     .-+|..+|..+.+.|||||+++-+|  -.++-.+...+. +..++.|+
T Consensus       174 ~IL~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS~~~~ENE~vv~~~l~~~~~~~  253 (284)
T d1sqga2         174 RILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAE  253 (284)
T ss_dssp             EEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCCCGGGTHHHHHHHHHHCTTCE
T ss_pred             EEEEeccccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeecCchhhCHHHHHHHHHhCCCcE
Confidence            99998762         3222111110     1246779999999999999998876  223333334443 34455554


Q ss_pred             cc
Q 025470          208 AL  209 (252)
Q Consensus       208 ~~  209 (252)
                      .+
T Consensus       254 ~~  255 (284)
T d1sqga2         254 LC  255 (284)
T ss_dssp             EC
T ss_pred             Ee
Confidence            44

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.56  E-value=3.4e-09  Score=87.95  Aligned_cols=74  Identities=18%  Similarity=0.288  Sum_probs=58.5

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||||+|.++..|++.  ...++|||+++.+++.+++++        ...+|+.++++|+.. ++  ++......
T Consensus        30 ~d~VLEIGpG~G~LT~~L~~~--~~~v~aIE~D~~l~~~l~~~~--------~~~~n~~ii~~D~l~-~~--~~~~~~~~   96 (245)
T d1yuba_          30 TDTVYEIGTGKGHLTTKLAKI--SKQVTSIELDSHLFNLSSEKL--------KLNTRVTLIHQDILQ-FQ--FPNKQRYK   96 (245)
T ss_dssp             SEEEEECSCCCSSCSHHHHHH--SSEEEESSSSCSSSSSSSCTT--------TTCSEEEECCSCCTT-TT--CCCSSEEE
T ss_pred             CCeEEEECCCccHHHHHHHhh--cCceeEeeecccchhhhhhhh--------hhccchhhhhhhhhc-cc--cccceeee
Confidence            568999999999999999999  568999999999876654332        245799999999874 43  45566677


Q ss_pred             EEEeCCC
Q 025470          146 MFFLFPD  152 (252)
Q Consensus       146 i~~~fpd  152 (252)
                      |+.|.|=
T Consensus        97 vv~NLPY  103 (245)
T d1yuba_          97 IVGNIPY  103 (245)
T ss_dssp             EEEECCS
T ss_pred             Eeeeeeh
Confidence            8888763

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.55  E-value=4e-07  Score=77.81  Aligned_cols=125  Identities=19%  Similarity=0.224  Sum_probs=90.0

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ++..|||++||.|.=+..+|.... ...++++|+++..+....+++..+      +..|+.++..|... ++  ..+..|
T Consensus       116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~------~~~~i~~~~~d~~~-~~--~~~~~f  186 (313)
T d1ixka_         116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL------GVLNVILFHSSSLH-IG--ELNVEF  186 (313)
T ss_dssp             TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH------TCCSEEEESSCGGG-GG--GGCCCE
T ss_pred             ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHH------Hhhccccccccccc-cc--cccccc
Confidence            356999999999999999998744 568999999999998888887776      78899999988763 33  235789


Q ss_pred             cEEEEeCCC---------Cccccccccc-----cccCHHHHHHHHHhhcCCcEEEEEe------CchHHHHHHHH
Q 025470          144 TKMFFLFPD---------PHFKEKNHRR-----RVISPHLLDEYAYVLGVGGIIYTIT------DVEELGDWMRS  198 (252)
Q Consensus       144 d~i~~~fpd---------P~~k~~h~kr-----r~~~~~~l~~~~~~LkpgG~l~~~t------d~~~~~~~~~~  198 (252)
                      |.|.+.-|.         |..+.+....     .-.+..+|....+.|||||.++.+|      -|++...++++
T Consensus       187 D~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCSl~~eENE~VV~~~L~  261 (313)
T d1ixka_         187 DKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALD  261 (313)
T ss_dssp             EEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESCCCGGGTHHHHHHHHH
T ss_pred             cEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeeccCChHhHHHHHHHHHh
Confidence            999987662         2111111111     1245679999999999999988876      24445554443

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=6.9e-07  Score=75.56  Aligned_cols=132  Identities=8%  Similarity=-0.053  Sum_probs=87.0

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC-CCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE-KGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~-~~s~  143 (252)
                      +..|||++||.|.-+..+|.. .+...++++|+++..++..++++..+      +..|+.+...|... +....+ ...+
T Consensus        95 g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~------g~~~~~~~~~d~~~-~~~~~~~~~~f  167 (293)
T d2b9ea1          95 GSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARA------GVSCCELAEEDFLA-VSPSDPRYHEV  167 (293)
T ss_dssp             TCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT------TCCSEEEEECCGGG-SCTTCGGGTTE
T ss_pred             cceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhc------Cccceeeeehhhhh-hccccccccee
Confidence            568999999999999999976 45678999999999999888888765      88999999999863 332222 3579


Q ss_pred             cEEEEeCC---------CCccccc---ccc--ccc--cCHHHHHHHHHhhcCCcEEEEEe--CchHHHHHHHHHHh-cCC
Q 025470          144 TKMFFLFP---------DPHFKEK---NHR--RRV--ISPHLLDEYAYVLGVGGIIYTIT--DVEELGDWMRSCLE-NHP  204 (252)
Q Consensus       144 d~i~~~fp---------dP~~k~~---h~k--rr~--~~~~~l~~~~~~LkpgG~l~~~t--d~~~~~~~~~~~~~-~~~  204 (252)
                      |.|.+.-|         .|..+.+   ...  .++  .+..++..+. .|+|||.|+-+|  -.++-.+.+.+.+. .++
T Consensus       168 D~VL~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCSl~~~ENe~vV~~~L~~~~  246 (293)
T d2b9ea1         168 HYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQNP  246 (293)
T ss_dssp             EEEEECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESCCCGGGTHHHHHHHHTTST
T ss_pred             eEEeecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeeccCChhHhHHHHHHHHHhCC
Confidence            99998766         2221111   100  111  2344555555 479999888776  23334444454443 344


Q ss_pred             C
Q 025470          205 M  205 (252)
Q Consensus       205 ~  205 (252)
                      .
T Consensus       247 ~  247 (293)
T d2b9ea1         247 G  247 (293)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.47  E-value=2.4e-07  Score=74.38  Aligned_cols=119  Identities=12%  Similarity=0.084  Sum_probs=78.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      +..|||.|||+|.++..+.+..+ ...++|+|+++.++.               ...+..++++|... .   .....+|
T Consensus        20 ~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~---------------~~~~~~~~~~~~~~-~---~~~~~fd   80 (223)
T d2ih2a1          20 GGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALD---------------LPPWAEGILADFLL-W---EPGEAFD   80 (223)
T ss_dssp             TCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCC---------------CCTTEEEEESCGGG-C---CCSSCEE
T ss_pred             cCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHh---------------hcccceeeeeehhc-c---ccccccc
Confidence            45899999999999999988755 457999999986432               23356778888653 1   2356899


Q ss_pred             EEEEeCCCCcccc----c-----------------cccccccCHHHHHHHHHhhcCCcEEEEEeCchH----HHHHHHHH
Q 025470          145 KMFFLFPDPHFKE----K-----------------NHRRRVISPHLLDEYAYVLGVGGIIYTITDVEE----LGDWMRSC  199 (252)
Q Consensus       145 ~i~~~fpdP~~k~----~-----------------h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~----~~~~~~~~  199 (252)
                      .|+.|.|.--.+.    .                 .....-+...|+....+.|++||.+.+.+...-    ....+.+.
T Consensus        81 ~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p~~~l~~~~~~~lR~~  160 (223)
T d2ih2a1          81 LILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVLEDFALLREF  160 (223)
T ss_dssp             EEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTCGGGHHHHHH
T ss_pred             eecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEeeeeccCcchHHHHHH
Confidence            9998876311000    0                 001111345688999999999999999875432    34445555


Q ss_pred             HhcC
Q 025470          200 LENH  203 (252)
Q Consensus       200 ~~~~  203 (252)
                      +.+.
T Consensus       161 l~~~  164 (223)
T d2ih2a1         161 LARE  164 (223)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            5433

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.1e-06  Score=73.57  Aligned_cols=74  Identities=14%  Similarity=0.224  Sum_probs=57.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|||||+|.|.++..|++.  ...+++||+++.++...++.+..     .....|+.++.+|+.. .+  ++  ....
T Consensus        22 ~d~VlEIGPG~G~LT~~Ll~~--~~~v~aiE~D~~l~~~L~~~~~~-----~~~~~~~~~i~~D~l~-~~--~~--~~~~   89 (278)
T d1zq9a1          22 TDVVLEVGPGTGNMTVKLLEK--AKKVVACELDPRLVAELHKRVQG-----TPVASKLQVLVGDVLK-TD--LP--FFDT   89 (278)
T ss_dssp             TCEEEEECCTTSTTHHHHHHH--SSEEEEEESCHHHHHHHHHHHTT-----STTGGGEEEEESCTTT-SC--CC--CCSE
T ss_pred             CCEEEEECCCchHHHHHHHhc--CCcEEEEEEccchhHHHHHHHhh-----hccccchhhhHHHHhh-hh--hh--hhhh
Confidence            568999999999999999999  45899999999998887765532     1234799999999864 32  22  3457


Q ss_pred             EEEeCC
Q 025470          146 MFFLFP  151 (252)
Q Consensus       146 i~~~fp  151 (252)
                      |+.|.|
T Consensus        90 vV~NLP   95 (278)
T d1zq9a1          90 CVANLP   95 (278)
T ss_dssp             EEEECC
T ss_pred             hhcchH
Confidence            888865

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.29  E-value=1.5e-06  Score=68.37  Aligned_cols=111  Identities=15%  Similarity=0.150  Sum_probs=77.6

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCcc---CCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNY---FEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~---~~~~s  142 (252)
                      +.++||..||.|.++..+.+.  +..++|+|+++.++..|...          ..+++.+++.+..+ +...   +..+.
T Consensus        19 g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~----------~~~~~~~~~~~f~~-~~~~l~~~~~~~   85 (182)
T d1wg8a2          19 GGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL----------HLPGLTVVQGNFRH-LKRHLAALGVER   85 (182)
T ss_dssp             TCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT----------CCTTEEEEESCGGG-HHHHHHHTTCSC
T ss_pred             CCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc----------cccceeEeehHHHH-HHHHHHHcCCCc
Confidence            569999999999999999997  56899999999998776532          34689999988763 3322   23467


Q ss_pred             ccEEEEeCCCCccccccccccc-cCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRV-ISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~-~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      +|.|++.+----..-....+-+ .....|......|++||.+.+.+-.
T Consensus        86 vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fh  133 (182)
T d1wg8a2          86 VDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFH  133 (182)
T ss_dssp             EEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECS
T ss_pred             cCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecc
Confidence            9999986521111100000000 1123688889999999999998854

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.27  E-value=2.2e-06  Score=74.82  Aligned_cols=113  Identities=13%  Similarity=0.029  Sum_probs=83.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhc---------CCCCcccEEEEeCCcccccCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVS---------NPGQYQNISVVRTNSMKYIPN  136 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~---------~~~~~~nv~~~~~da~~~l~~  136 (252)
                      ...|||..||+|..++..|...+...|+..|+|+.+++.+++|+......         ...+..++.+.+.|+...+..
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~~  125 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMAE  125 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhHh
Confidence            34899999999999999999877778999999999999999998654100         001223577888888654421


Q ss_pred             cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE-eCchHH
Q 025470          137 YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI-TDVEEL  192 (252)
Q Consensus       137 ~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~-td~~~~  192 (252)
                        ....+|.|.+.   |.-.         ...||+.+.+.++.||.|.++ ||...+
T Consensus       126 --~~~~fDvIDiD---PfGs---------~~pfldsAi~a~~~~Gll~vTaTD~a~L  168 (375)
T d2dula1         126 --RHRYFHFIDLD---PFGS---------PMEFLDTALRSAKRRGILGVTATDGAPL  168 (375)
T ss_dssp             --STTCEEEEEEC---CSSC---------CHHHHHHHHHHEEEEEEEEEEECCHHHH
T ss_pred             --hcCcCCcccCC---CCCC---------cHHHHHHHHHHhccCCEEEEEecCchhh
Confidence              24568988884   4321         236999999999999999874 675444

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.24  E-value=1e-06  Score=69.89  Aligned_cols=112  Identities=13%  Similarity=0.174  Sum_probs=64.7

Q ss_pred             ceEEEEcCcccHHHHHHH----HH----CCCCeEEEEecCHhHHHHHHHHHHHHhhc--------------CCCC-----
Q 025470           67 IQFADIGCGFGGLLISLS----TL----FPEVLMIGMELRDKVTEYVKERILALRVS--------------NPGQ-----  119 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA----~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~--------------~~~~-----  119 (252)
                      -+|+++|||+|.-...||    ..    .....++|.|+++.+++.|+...-.....              ....     
T Consensus        26 lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~~~  105 (193)
T d1af7a2          26 YRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEGLV  105 (193)
T ss_dssp             EEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCSEE
T ss_pred             eEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcccee
Confidence            389999999999544443    22    12357999999999998886422100000              0000     


Q ss_pred             ------cccEEEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          120 ------YQNISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       120 ------~~nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                            ...+.+...+...  ....+.+.+|.|++-.---.+..      -....+++.+++.|+|||.|++-
T Consensus       106 ~~~~~~~~~v~~~~~~~~~--~~~~~~~~fDvI~CRNVLiYf~~------~~~~~vl~~l~~~L~pGG~L~lG  170 (193)
T d1af7a2         106 RVRQELANYVEFSSVNLLE--KQYNVPGPFDAIFCRNVMIYFDK------TTQEDILRRFVPLLKPDGLLFAG  170 (193)
T ss_dssp             EECHHHHTTEEEEECCTTC--SSCCCCCCEEEEEECSSGGGSCH------HHHHHHHHHHGGGEEEEEEEEEC
T ss_pred             ehHHHHHHHHHHhhhhccc--cccCCCCCccEEEeehhHHhcCH------HHHHHHHHHHHHHhCCCcEEEEe
Confidence                  0123344444321  11233578999986321111110      11236999999999999998873

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.21  E-value=6.1e-07  Score=74.27  Aligned_cols=57  Identities=12%  Similarity=0.162  Sum_probs=47.2

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK  132 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~  132 (252)
                      +..|||||||.|.++..|++.  ..++++||+++.+++..+++.        ...+|+.++.+|+..
T Consensus        22 ~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~--------~~~~~~~ii~~D~l~   78 (252)
T d1qyra_          22 GQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHP--------FLGPKLTIYQQDAMT   78 (252)
T ss_dssp             TCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCT--------TTGGGEEEECSCGGG
T ss_pred             CCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHh--------hhccchhHHhhhhhh
Confidence            558999999999999999988  468999999999887655321        245799999999874

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.16  E-value=3.8e-06  Score=74.33  Aligned_cols=118  Identities=13%  Similarity=0.120  Sum_probs=79.3

Q ss_pred             CceEEEEcCcccHHHHHHHHHCC-------------CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFP-------------EVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK  132 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p-------------~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~  132 (252)
                      ...|+|..||+|.+++.+.+...             ..++.|+|+++.+...|.-++...    .....+..+...|...
T Consensus       163 ~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~----g~~~~~~~i~~~d~l~  238 (425)
T d2okca1         163 GETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLH----GIGTDRSPIVCEDSLE  238 (425)
T ss_dssp             TCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHT----TCCSSCCSEEECCTTT
T ss_pred             cceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhc----CCccccceeecCchhh
Confidence            45899999999999998887521             235899999999988887665332    1223345566777542


Q ss_pred             ccCccCCCCcccEEEEeCCCCcc--cccc-------ccccccCHHHHHHHHHhhcCCcEEEEEeCchH
Q 025470          133 YIPNYFEKGQLTKMFFLFPDPHF--KEKN-------HRRRVISPHLLDEYAYVLGVGGIIYTITDVEE  191 (252)
Q Consensus       133 ~l~~~~~~~s~d~i~~~fpdP~~--k~~h-------~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~  191 (252)
                          ..+...+|.|+.|.|-.-.  +...       .+..-....|+..+...|++||++.+.+....
T Consensus       239 ----~~~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p~~~  302 (425)
T d2okca1         239 ----KEPSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLPDNV  302 (425)
T ss_dssp             ----SCCSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHH
T ss_pred             ----hhcccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEechHH
Confidence                2345689999999874211  1000       01111224599999999999999999876543

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=98.04  E-value=3.3e-06  Score=68.89  Aligned_cols=98  Identities=12%  Similarity=0.090  Sum_probs=63.0

Q ss_pred             ceEEEEcCcccHHHHHHHHH----CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCC
Q 025470           67 IQFADIGCGFGGLLISLSTL----FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEK  140 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~----~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~  140 (252)
                      ..|||||++.|..++.+|..    .++..++|+|+++.....+           ....+|+.++.+|...  .+ ..+..
T Consensus        82 k~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~-----------~~~~~~I~~i~gDs~~~~~~-~~l~~  149 (232)
T d2bm8a1          82 RTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIP-----------ASDMENITLHQGDCSDLTTF-EHLRE  149 (232)
T ss_dssp             SEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCC-----------GGGCTTEEEEECCSSCSGGG-GGGSS
T ss_pred             CEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhh-----------hccccceeeeecccccHHHH-HHHHh
Confidence            37999999999998877753    4678999999987543211           1245789999998642  12 22344


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ...|.|++.-  .     |...- +... + .+...|++||.+++-
T Consensus       150 ~~~dlIfID~--~-----H~~~~-v~~~-~-~~~~lLk~GG~iIve  185 (232)
T d2bm8a1         150 MAHPLIFIDN--A-----HANTF-NIMK-W-AVDHLLEEGDYFIIE  185 (232)
T ss_dssp             SCSSEEEEES--S-----CSSHH-HHHH-H-HHHHTCCTTCEEEEC
T ss_pred             cCCCEEEEcC--C-----cchHH-HHHH-H-HHhcccCcCCEEEEE
Confidence            5677777641  1     21111 1111 2 356899999999773

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.00  E-value=1.1e-05  Score=63.13  Aligned_cols=125  Identities=13%  Similarity=0.039  Sum_probs=79.4

Q ss_pred             CceEEEEcCcccHHHHHHHHH-CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccccc-----CccCC
Q 025470           66 KIQFADIGCGFGGLLISLSTL-FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYI-----PNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~-~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l-----~~~~~  139 (252)
                      ...||||||+.|.++..+++. .+...++|+|+.+-                 ...+++.++++|.....     .....
T Consensus        23 ~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------------~~i~~~~~~~~d~~~~~~~~~~~~~~~   85 (180)
T d1ej0a_          23 GMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------------DPIVGVDFLQGDFRDELVMKALLERVG   85 (180)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------------CCCTTEEEEESCTTSHHHHHHHHHHHT
T ss_pred             CCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------------cccCCceEeecccccchhhhhhhhhcc
Confidence            458999999999999998886 45578999998652                 25778999999975311     11233


Q ss_pred             CCcccEEEEeCCCCccc---cccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHhcCCCcccc
Q 025470          140 KGQLTKMFFLFPDPHFK---EKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLENHPMFEAL  209 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k---~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~~~~~~~~~  209 (252)
                      ...+|.|.......-..   ..|...--+....+..+.++|++||.+++..=.-.....+...+...  |..+
T Consensus        86 ~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~~~~l~~~l~~~--F~~V  156 (180)
T d1ej0a_          86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEGFDEYLREIRSL--FTKV  156 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTTHHHHHHHHHHH--EEEE
T ss_pred             CcceeEEEecccchhcccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCccHHHHHHHHHhh--cCEE
Confidence            56789988754321111   11111111223466777899999999999874333334444445432  5544

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.89  E-value=7.6e-05  Score=61.12  Aligned_cols=87  Identities=10%  Similarity=0.109  Sum_probs=64.7

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCC---CcccEEEEeCCcccccCccCCCCc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPG---QYQNISVVRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~---~~~nv~~~~~da~~~l~~~~~~~s  142 (252)
                      .+.|||.=||.|.-+..+|..  ++.|++||.++.+.......+.........   -..|+.++++|+.+.+...  ...
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~--G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~--~~~  164 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI--TPR  164 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHH--TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC--SSC
T ss_pred             CCEEEECCCcccHHHHHHHhC--CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhcc--CCC
Confidence            458999999999999999999  678999999998777766665544211100   1458999999998877643  457


Q ss_pred             ccEEEEeCCCCccc
Q 025470          143 LTKMFFLFPDPHFK  156 (252)
Q Consensus       143 ~d~i~~~fpdP~~k  156 (252)
                      +|.||+..+-|..+
T Consensus       165 ~DvIYlDPMFp~~~  178 (250)
T d2oyra1         165 PQVVYLDPMFPHKQ  178 (250)
T ss_dssp             CSEEEECCCCCCCC
T ss_pred             CCEEEECCCCcccc
Confidence            89999865554433

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.70  E-value=3.4e-05  Score=69.90  Aligned_cols=123  Identities=15%  Similarity=0.055  Sum_probs=72.8

Q ss_pred             CceEEEEcCcccHHHHHHHHHC----C--------------CCeEEEEecCHhHHHHHHHHHHHHhhcCCCCc-ccEEEE
Q 025470           66 KIQFADIGCGFGGLLISLSTLF----P--------------EVLMIGMELRDKVTEYVKERILALRVSNPGQY-QNISVV  126 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~----p--------------~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~-~nv~~~  126 (252)
                      ...|+|..||+|.+++...+..    .              ...++|+|+++.+...|.-++.-. . ..... .+-.+.
T Consensus       165 ~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l~-~-~~~~i~~~~~~~  242 (524)
T d2ar0a1         165 REVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH-D-IEGNLDHGGAIR  242 (524)
T ss_dssp             TCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT-T-CCCBGGGTBSEE
T ss_pred             chhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHhh-c-ccccccccchhh
Confidence            4589999999999998876641    1              125899999999988877654321 0 00000 011222


Q ss_pred             eCCcccccCccCCCCcccEEEEeCCCC--cccccc----ccccccCHHHHHHHHHhhcCCcEEEEEeCchHH
Q 025470          127 RTNSMKYIPNYFEKGQLTKMFFLFPDP--HFKEKN----HRRRVISPHLLDEYAYVLGVGGIIYTITDVEEL  192 (252)
Q Consensus       127 ~~da~~~l~~~~~~~s~d~i~~~fpdP--~~k~~h----~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~  192 (252)
                      ..+..  ..+......+|.|+.|.|--  |.....    ....-..-.|+..+.+.|++||++.++++.-.+
T Consensus       243 ~~~~l--~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIlP~~~L  312 (524)
T d2ar0a1         243 LGNTL--GSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVPDNVL  312 (524)
T ss_dssp             ESCTT--SHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEEHHHH
T ss_pred             hhhhh--hhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEEehHHh
Confidence            23321  01122345799999997732  111100    000111234999999999999999998875433

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=97.61  E-value=0.00016  Score=58.78  Aligned_cols=109  Identities=13%  Similarity=0.092  Sum_probs=66.1

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      ...|+|+|||.|.++..+|.+.+...+.|+++--+.-+   .   . ......+..-+.+...+..    ..+++..+|.
T Consensus        67 ~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e---~---P-~~~~~~~~ni~~~~~~~dv----~~l~~~~~D~  135 (257)
T d2p41a1          67 EGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE---E---P-IPMSTYGWNLVRLQSGVDV----FFIPPERCDT  135 (257)
T ss_dssp             CEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC---C---C-CCCCSTTGGGEEEECSCCT----TTSCCCCCSE
T ss_pred             CCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc---C---C-ccccccccccccchhhhhH----HhcCCCcCCE
Confidence            45899999999999999999877667888887321000   0   0 0001112222455444422    1245778999


Q ss_pred             EEEeCC--CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc
Q 025470          146 MFFLFP--DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV  189 (252)
Q Consensus       146 i~~~fp--dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~  189 (252)
                      |++...  +|-+...+.  |  +-.+|+.+.+.|+|||.|+++.-.
T Consensus       136 vlcDm~ess~~~~vd~~--R--tl~vLela~~wLk~gg~FvvKVl~  177 (257)
T d2p41a1         136 LLCDIGESSPNPTVEAG--R--TLRVLNLVENWLSNNTQFCVKVLN  177 (257)
T ss_dssp             EEECCCCCCSSHHHHHH--H--HHHHHHHHHHHCCTTCEEEEEESC
T ss_pred             EEeeCCCCCCCchhhhh--h--HHHHHHHHHHHcccCCEEEEEECC
Confidence            987652  222222222  2  125788899999999999988543

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.25  E-value=0.00025  Score=60.07  Aligned_cols=57  Identities=9%  Similarity=0.173  Sum_probs=45.9

Q ss_pred             CceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025470           66 KIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM  131 (252)
Q Consensus        66 ~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~  131 (252)
                      +..|||||.|.|.++..|.......++++||+++..++..++..         ...|+.++.+|+.
T Consensus        44 ~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~---------~~~~~~ii~~D~l  100 (322)
T d1i4wa_          44 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF---------EGSPLQILKRDPY  100 (322)
T ss_dssp             TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT---------TTSSCEEECSCTT
T ss_pred             CCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc---------cCCCcEEEeCchh
Confidence            45899999999999999998743358999999999877655432         2368999999985

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=97.09  E-value=0.00049  Score=52.85  Aligned_cols=96  Identities=18%  Similarity=0.144  Sum_probs=63.4

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC---CcccccCccCCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT---NSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~---da~~~l~~~~~~~  141 (252)
                      +..||=+|||. |..++.+|+......++++|.++..++.|++ +         +.+.  ++..   +..+.+.......
T Consensus        28 g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~-l---------Ga~~--~i~~~~~~~~~~v~~~t~g~   95 (174)
T d1jqba2          28 GSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF-Y---------GATD--ILNYKNGHIEDQVMKLTNGK   95 (174)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH-H---------TCSE--EECGGGSCHHHHHHHHTTTS
T ss_pred             CCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh-h---------Cccc--cccccchhHHHHHHHHhhcc
Confidence            44666699998 8888888987654579999999988777653 1         3322  2221   1112222222233


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      -+|.|+-.-..+.              .+++..+.|+|+|++.+.-
T Consensus        96 G~D~vid~~g~~~--------------~~~~a~~~~~~~G~iv~~G  127 (174)
T d1jqba2          96 GVDRVIMAGGGSE--------------TLSQAVKMVKPGGIISNIN  127 (174)
T ss_dssp             CEEEEEECSSCTT--------------HHHHHHHHEEEEEEEEECC
T ss_pred             CcceEEEccCCHH--------------HHHHHHHHHhcCCEEEEEe
Confidence            4888776554443              7888999999999999853

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.94  E-value=0.0014  Score=51.18  Aligned_cols=111  Identities=13%  Similarity=0.042  Sum_probs=65.9

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE-EeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV-VRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~-~~~da~~~l~~~~~~~s~  143 (252)
                      ...||-+|||. |..++.+|+......++++|.++..++.|++.          +.+.+.. ...|..+.+.......-+
T Consensus        26 G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~----------Ga~~~~~~~~~~~~~~i~~~t~g~g~   95 (195)
T d1kola2          26 GSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ----------GFEIADLSLDTPLHEQIAALLGEPEV   95 (195)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCEEEETTSSSCHHHHHHHHHSSSCE
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc----------cccEEEeCCCcCHHHHHHHHhCCCCc
Confidence            56899999999 77788888887777999999999988776541          3332111 011221112112223456


Q ss_pred             cEEEEeCCCCcccccc-ccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKN-HRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h-~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.++-.--.+-.-..+ .-........++.+.+.++|||++.+.
T Consensus        96 D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~  139 (195)
T d1kola2          96 DCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIP  139 (195)
T ss_dssp             EEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEEC
T ss_pred             EEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEe
Confidence            7766432211100000 001112346899999999999999886

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=96.58  E-value=0.0033  Score=48.06  Aligned_cols=96  Identities=15%  Similarity=0.018  Sum_probs=62.4

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe--CCcccc---cCccCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR--TNSMKY---IPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~--~da~~~---l~~~~~  139 (252)
                      ...||=+|||. |.+++.+|+...-..++++|.++..++.|++.          +.+.+ +..  .+..+.   +.....
T Consensus        29 G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l----------Ga~~v-i~~~~~~~~~~~~~i~~~~~   97 (182)
T d1vj0a2          29 GKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI----------GADLT-LNRRETSVEERRKAIMDITH   97 (182)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT----------TCSEE-EETTTSCHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCccchhheecccccccccccccccccccccccccc----------cceEE-EeccccchHHHHHHHHHhhC
Confidence            45888899996 88889999987434899999999988776531          33222 211  121111   111122


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ...+|.|+-.-..|              ..++...+.|++||++++.
T Consensus        98 ~~g~Dvvid~vG~~--------------~~~~~a~~~l~~~G~iv~~  130 (182)
T d1vj0a2          98 GRGADFILEATGDS--------------RALLEGSELLRRGGFYSVA  130 (182)
T ss_dssp             TSCEEEEEECSSCT--------------THHHHHHHHEEEEEEEEEC
T ss_pred             CCCceEEeecCCch--------------hHHHHHHHHhcCCCEEEEE
Confidence            33478777544332              3788899999999999875

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.001  Score=50.40  Aligned_cols=96  Identities=10%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             CceEEEEcCc-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCG-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||-+|+| .|.+++.+|+.. +++++++|.+++.++.|++    +      +.+.+ +...+-.+... .. .+.+|
T Consensus        28 g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~----l------Ga~~~-i~~~~~~~~~~-~~-~~~~d   93 (168)
T d1piwa2          28 GKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK----M------GADHY-IATLEEGDWGE-KY-FDTFD   93 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH----H------TCSEE-EEGGGTSCHHH-HS-CSCEE
T ss_pred             CCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc----c------CCcEE-eeccchHHHHH-hh-hcccc
Confidence            5578889999 578888888775 6899999999998877654    2      43322 11111111111 11 34678


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++..-..+...            .+....+.|+|+|++++..
T Consensus        94 ~vi~~~~~~~~~------------~~~~~~~~l~~~G~iv~~G  124 (168)
T d1piwa2          94 LIVVCASSLTDI------------DFNIMPKAMKVGGRIVSIS  124 (168)
T ss_dssp             EEEECCSCSTTC------------CTTTGGGGEEEEEEEEECC
T ss_pred             eEEEEecCCccc------------hHHHHHHHhhccceEEEec
Confidence            877654333211            2345678899999998864

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.0047  Score=46.60  Aligned_cols=97  Identities=10%  Similarity=0.041  Sum_probs=61.5

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCc-cc---ccCccCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNS-MK---YIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da-~~---~l~~~~~~  140 (252)
                      ...||=+|||. |.++..+|+.....+++++|.++..++.|++.          +.+.+.....+. .+   .+... ..
T Consensus        27 gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~----------Ga~~~~~~~~~~~~~~~~~~~~~-~g   95 (171)
T d1pl8a2          27 GHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI----------GADLVLQISKESPQEIARKVEGQ-LG   95 (171)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT----------TCSEEEECSSCCHHHHHHHHHHH-HT
T ss_pred             CCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh----------CCccccccccccccccccccccc-CC
Confidence            45788899987 66667777776555899999999988776531          444333222221 10   01100 12


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      ..+|.|+-.-..              +..++...+.|++||++++.-
T Consensus        96 ~g~Dvvid~~G~--------------~~~~~~a~~~~~~gG~iv~~G  128 (171)
T d1pl8a2          96 CKPEVTIECTGA--------------EASIQAGIYATRSGGTLVLVG  128 (171)
T ss_dssp             SCCSEEEECSCC--------------HHHHHHHHHHSCTTCEEEECS
T ss_pred             CCceEEEeccCC--------------chhHHHHHHHhcCCCEEEEEe
Confidence            346777654332              248899999999999998864

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=96.52  E-value=0.0016  Score=52.07  Aligned_cols=44  Identities=16%  Similarity=0.071  Sum_probs=38.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERIL  110 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~  110 (252)
                      ++.+|||.=||+|..+.+..+.  +.++||+|++++.++.|.+++.
T Consensus       212 ~gd~VlDpF~GSGTT~~aa~~~--~R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         212 PNDLVLDCFMGSGTTAIVAKKL--GRNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCEEEECCCCchHHHHHHHHc--CCeEEEEeCCHHHHHHHHHHHc
Confidence            4679999999999999888777  6899999999999999988763

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=96.51  E-value=0.0028  Score=48.22  Aligned_cols=95  Identities=18%  Similarity=0.270  Sum_probs=63.2

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC---cccccCccCCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN---SMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d---a~~~l~~~~~~~  141 (252)
                      ...||=+|||. |..+..+|+......++++|.++..++.|++    +      +...  ++..+   ..+.+.. +.++
T Consensus        29 g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~----~------Ga~~--~i~~~~~~~~~~i~~-~t~g   95 (174)
T d1f8fa2          29 ASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ----L------GATH--VINSKTQDPVAAIKE-ITDG   95 (174)
T ss_dssp             TCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH----H------TCSE--EEETTTSCHHHHHHH-HTTS
T ss_pred             CCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHH----c------CCeE--EEeCCCcCHHHHHHH-HcCC
Confidence            55788899987 5567778877766688899999988777653    1      4332  23222   2222221 2345


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .+|.|+-.-..              ...++...+.|+|+|++.+.-
T Consensus        96 g~D~vid~~G~--------------~~~~~~~~~~~~~~G~i~~~G  127 (174)
T d1f8fa2          96 GVNFALESTGS--------------PEILKQGVDALGILGKIAVVG  127 (174)
T ss_dssp             CEEEEEECSCC--------------HHHHHHHHHTEEEEEEEEECC
T ss_pred             CCcEEEEcCCc--------------HHHHHHHHhcccCceEEEEEe
Confidence            68887765332              258899999999999998853

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.40  E-value=0.0029  Score=47.97  Aligned_cols=96  Identities=15%  Similarity=0.226  Sum_probs=60.8

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC--cccccCccCCCCc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN--SMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d--a~~~l~~~~~~~s  142 (252)
                      ...||=+|||. |.+++.+|+......++++|.+++.++.+++.          +.+.  ++..+  ..+.........-
T Consensus        33 g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~----------ga~~--~i~~~~~~~~~~~~~~~~~g  100 (172)
T d1h2ba2          33 GAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL----------GADH--VVDARRDPVKQVMELTRGRG  100 (172)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT----------TCSE--EEETTSCHHHHHHHHTTTCC
T ss_pred             CCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc----------ccce--eecCcccHHHHHHHhhCCCC
Confidence            45788899987 55557778776667899999999877665531          3332  23222  1111111122334


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      +|.|+-.-..              ...++...+.|++||++++.-
T Consensus       101 ~d~vid~~g~--------------~~~~~~a~~~l~~~G~iv~~G  131 (172)
T d1h2ba2         101 VNVAMDFVGS--------------QATVDYTPYLLGRMGRLIIVG  131 (172)
T ss_dssp             EEEEEESSCC--------------HHHHHHGGGGEEEEEEEEECC
T ss_pred             ceEEEEecCc--------------chHHHHHHHHHhCCCEEEEEe
Confidence            7777654432              247889999999999999853

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=96.27  E-value=0.0018  Score=53.33  Aligned_cols=43  Identities=14%  Similarity=-0.004  Sum_probs=37.9

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERI  109 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~  109 (252)
                      ++.+|||.=||+|..+.+....  +.++||+|++++.++.|.+++
T Consensus       250 ~gdiVlDpF~GSGTT~~AA~~l--gR~~Ig~El~~~y~~~a~~Rl  292 (320)
T d1booa_         250 PDDLVVDIFGGSNTTGLVAERE--SRKWISFEMKPEYVAASAFRF  292 (320)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHGGG
T ss_pred             CCCEEEecCCCCcHHHHHHHHc--CCcEEEEeCCHHHHHHHHHHH
Confidence            4679999999999998888777  789999999999998887654

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.19  E-value=0.004  Score=50.29  Aligned_cols=46  Identities=15%  Similarity=0.020  Sum_probs=41.3

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILAL  112 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~  112 (252)
                      ++.+|||-=||+|..+++....  +.+++|+|+++..++.|.+++...
T Consensus       207 ~gdiVLDpF~GSGTT~~Aa~~l--gR~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         207 PGSTVLDFFAGSGVTARVAIQE--GRNSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHH--TCEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCEEEecCCCCcHHHHHHHHh--CCeEEEEeCCHHHHHHHHHHHHHh
Confidence            4679999999999999988888  679999999999999999888654

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=95.88  E-value=0.0093  Score=45.37  Aligned_cols=98  Identities=11%  Similarity=0.031  Sum_probs=64.1

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEE-EeCC-cccccCccCCCCc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISV-VRTN-SMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~-~~~d-a~~~l~~~~~~~s  142 (252)
                      ...||=+|||. |.+++.+|+......++.+|.++..++.|++.          +.+.+.- ...| ....+......+-
T Consensus        29 G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~----------Ga~~~i~~~~~~~~~~~~~~~~~~~G   98 (174)
T d1e3ia2          29 GSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL----------GATDCLNPRELDKPVQDVITELTAGG   98 (174)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----------TCSEEECGGGCSSCHHHHHHHHHTSC
T ss_pred             CCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh----------CCCcccCCccchhhhhhhHhhhhcCC
Confidence            55788899999 88899999998666899999999887766541          4332211 1111 1001111122355


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEEe
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTIT  187 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~t  187 (252)
                      +|.++-.-..              +..+++..+.|++| |++++.-
T Consensus        99 ~d~vie~~G~--------------~~~~~~a~~~~~~g~G~~v~vG  130 (174)
T d1e3ia2          99 VDYSLDCAGT--------------AQTLKAAVDCTVLGWGSCTVVG  130 (174)
T ss_dssp             BSEEEESSCC--------------HHHHHHHHHTBCTTTCEEEECC
T ss_pred             CcEEEEeccc--------------chHHHHHHHHhhcCCeEEEecC
Confidence            7887754332              35899999999996 9998863

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=95.85  E-value=0.025  Score=42.19  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=60.1

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc------cccCccC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM------KYIPNYF  138 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~------~~l~~~~  138 (252)
                      ...||=+|||. |.+++.+|+.. +++++++|.++..++.|++.          +............      +.+....
T Consensus        27 g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~~----------ga~~~~~~~~~~~~~~~~~~~~~~~~   95 (170)
T d1e3ja2          27 GTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKNC----------GADVTLVVDPAKEEESSIIERIRSAI   95 (170)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHT----------TCSEEEECCTTTSCHHHHHHHHHHHS
T ss_pred             CCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHHc----------CCcEEEeccccccccchhhhhhhccc
Confidence            45788899995 77777788776 57999999999988776541          3222221111100      0111111


Q ss_pred             CCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          139 EKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       139 ~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                       ..-+|.|+-.-..              +..++...+.|+++|++.+..
T Consensus        96 -g~g~D~vid~~g~--------------~~~~~~a~~~~~~~G~iv~~G  129 (170)
T d1e3ja2          96 -GDLPNVTIDCSGN--------------EKCITIGINITRTGGTLMLVG  129 (170)
T ss_dssp             -SSCCSEEEECSCC--------------HHHHHHHHHHSCTTCEEEECS
T ss_pred             -ccCCceeeecCCC--------------hHHHHHHHHHHhcCCceEEEe
Confidence             2346766543222              247889999999999999864

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.013  Score=44.13  Aligned_cols=95  Identities=13%  Similarity=0.165  Sum_probs=61.2

Q ss_pred             CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCcccccCccCCCCc
Q 025470           66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~~~~s  142 (252)
                      ...||=+|+  |.|..++.+|+.. ++.+++++.+++..+.+++    +      +.+.+--. ..|..+.+........
T Consensus        29 g~~VlV~Ga~G~vG~~aiq~a~~~-G~~vi~~~~~~~~~~~~~~----~------Ga~~vi~~~~~~~~~~i~~~t~~~g   97 (174)
T d1yb5a2          29 GESVLVHGASGGVGLAACQIARAY-GLKILGTAGTEEGQKIVLQ----N------GAHEVFNHREVNYIDKIKKYVGEKG   97 (174)
T ss_dssp             TCEEEEETCSSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----T------TCSEEEETTSTTHHHHHHHHHCTTC
T ss_pred             CCEEEEEecccccccccccccccc-Ccccccccccccccccccc----c------CcccccccccccHHHHhhhhhccCC
Confidence            558999997  4688888999886 6789999988876665542    1      44433111 1122222222233455


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +|.|+-..               ....++...+.|+|+|+++..
T Consensus        98 ~d~v~d~~---------------g~~~~~~~~~~l~~~G~iv~~  126 (174)
T d1yb5a2          98 IDIIIEML---------------ANVNLSKDLSLLSHGGRVIVV  126 (174)
T ss_dssp             EEEEEESC---------------HHHHHHHHHHHEEEEEEEEEC
T ss_pred             ceEEeecc---------------cHHHHHHHHhccCCCCEEEEE
Confidence            77776432               124788899999999999875

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=95.20  E-value=0.029  Score=41.85  Aligned_cols=93  Identities=16%  Similarity=0.247  Sum_probs=61.2

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||=+|||. |.+++.+|+.. ++.++++|.+++..+.+++    +      +.+.+  +...-.....  -....+|
T Consensus        31 G~~VlI~GaG~vG~~a~qlak~~-Ga~~i~~~~~~~~~~~a~~----l------Gad~~--i~~~~~~~~~--~~~~~~D   95 (168)
T d1uufa2          31 GKKVGVVGIGGLGHMGIKLAHAM-GAHVVAFTTSEAKREAAKA----L------GADEV--VNSRNADEMA--AHLKSFD   95 (168)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESSGGGHHHHHH----H------TCSEE--EETTCHHHHH--TTTTCEE
T ss_pred             CCEEEEeccchHHHHHHHHhhcc-cccchhhccchhHHHHHhc----c------CCcEE--EECchhhHHH--HhcCCCc
Confidence            45677799987 88888899886 6788899999987766543    2      43322  2222111111  1124688


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      .++-.-..+.              .+......|+++|++.+..
T Consensus        96 ~vid~~g~~~--------------~~~~~~~~l~~~G~iv~~G  124 (168)
T d1uufa2          96 FILNTVAAPH--------------NLDDFTTLLKRDGTMTLVG  124 (168)
T ss_dssp             EEEECCSSCC--------------CHHHHHTTEEEEEEEEECC
T ss_pred             eeeeeeecch--------------hHHHHHHHHhcCCEEEEec
Confidence            8776655443              5677888999999999864

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=95.17  E-value=0.039  Score=39.30  Aligned_cols=100  Identities=8%  Similarity=-0.020  Sum_probs=70.6

Q ss_pred             CcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCCCcccEEEEeCC
Q 025470           74 CGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEKGQLTKMFFLFP  151 (252)
Q Consensus        74 cG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~~s~d~i~~~fp  151 (252)
                      ||.|..+..+++...+..++.||.++..++.+..             .++.++.+|+..  .|.. ..-...+.+++..+
T Consensus         6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~-------------~~~~~i~Gd~~~~~~L~~-a~i~~A~~vi~~~~   71 (129)
T d2fy8a1           6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLR-------------SGANFVHGDPTRVSDLEK-ANVRGARAVIVNLE   71 (129)
T ss_dssp             ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHH-------------TTCEEEESCTTSHHHHHH-TTCTTCSEEEECCS
T ss_pred             ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHh-------------cCccccccccCCHHHHHH-hhhhcCcEEEEecc
Confidence            6778999999998878889999999987654321             257889999853  1211 22345678888776


Q ss_pred             CCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHH
Q 025470          152 DPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRS  198 (252)
Q Consensus       152 dP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~  198 (252)
                      +.-.           .-++....+.|.|...++..++++++...+..
T Consensus        72 ~d~~-----------n~~~~~~~r~~~~~~~iia~~~~~~~~~~l~~  107 (129)
T d2fy8a1          72 SDSE-----------TIHCILGIRKIDESVRIIAEAERYENIEQLRM  107 (129)
T ss_dssp             SHHH-----------HHHHHHHHHHHCSSSCEEEECSSGGGHHHHHH
T ss_pred             chhh-----------hHHHHHHHHHHCCCceEEEEEcCHHHHHHHHH
Confidence            6432           23566677888999999999888877665543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=95.08  E-value=0.0097  Score=44.65  Aligned_cols=95  Identities=17%  Similarity=0.283  Sum_probs=60.8

Q ss_pred             CceEEEEcC-c-ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC---cccccCccCCC
Q 025470           66 KIQFADIGC-G-FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN---SMKYIPNYFEK  140 (252)
Q Consensus        66 ~~~vLDIGc-G-~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d---a~~~l~~~~~~  140 (252)
                      ...||=+|| | .|..++.+++......++++|.+++.++.+++.          +.+.  ++..+   ..+.+......
T Consensus        28 g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~----------Ga~~--~i~~~~~~~~~~~~~~~~~   95 (170)
T d1jvba2          28 TKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA----------GADY--VINASMQDPLAEIRRITES   95 (170)
T ss_dssp             TCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH----------TCSE--EEETTTSCHHHHHHHHTTT
T ss_pred             CCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc----------CCce--eeccCCcCHHHHHHHHhhc
Confidence            558999997 3 566677777876667899999999887766531          3332  22222   11111111223


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      ..+|.++-.-..              ...++...+.|+|||++++.
T Consensus        96 ~~~d~vid~~g~--------------~~~~~~a~~~l~~~G~iv~~  127 (170)
T d1jvba2          96 KGVDAVIDLNNS--------------EKTLSVYPKALAKQGKYVMV  127 (170)
T ss_dssp             SCEEEEEESCCC--------------HHHHTTGGGGEEEEEEEEEC
T ss_pred             ccchhhhccccc--------------chHHHhhhhhcccCCEEEEe
Confidence            457777654322              24778888999999999886

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.58  E-value=0.04  Score=40.87  Aligned_cols=92  Identities=15%  Similarity=0.136  Sum_probs=56.1

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCC---cccccCccCCCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTN---SMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~d---a~~~l~~~~~~~  141 (252)
                      ...||=+|||. |..++.+|+.. +.+++++|.++..++.+++    +      +.+.+  +..+   ..+.+.. ...+
T Consensus        28 g~~VlV~GaG~vG~~~~~~ak~~-G~~Vi~~~~~~~~~~~a~~----~------Ga~~~--i~~~~~~~~~~~~~-~~~g   93 (166)
T d1llua2          28 GQWVAISGIGGLGHVAVQYARAM-GLHVAAIDIDDAKLELARK----L------GASLT--VNARQEDPVEAIQR-DIGG   93 (166)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH----T------TCSEE--EETTTSCHHHHHHH-HHSS
T ss_pred             CCEEEEeeccccHHHHHHHHHHc-CCccceecchhhHHHhhhc----c------Ccccc--ccccchhHHHHHHH-hhcC
Confidence            44666699987 77777788776 5899999999988776643    1      43322  2221   1111111 0112


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                       .+.++..-.              ....++...+.|++||++++.
T Consensus        94 -~~~~i~~~~--------------~~~~~~~~~~~l~~~G~iv~~  123 (166)
T d1llua2          94 -AHGVLVTAV--------------SNSAFGQAIGMARRGGTIALV  123 (166)
T ss_dssp             -EEEEEECCS--------------CHHHHHHHHTTEEEEEEEEEC
T ss_pred             -Ccccccccc--------------cchHHHHHHHHhcCCcEEEEE
Confidence             333333221              235788899999999999885

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.54  E-value=0.028  Score=45.26  Aligned_cols=113  Identities=17%  Similarity=0.143  Sum_probs=65.8

Q ss_pred             ceEEEEcCcccHHHHHHHHHC----C------------------------------------CCeEEEEecCHhHHHHHH
Q 025470           67 IQFADIGCGFGGLLISLSTLF----P------------------------------------EVLMIGMELRDKVTEYVK  106 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~----p------------------------------------~~~~iGiDis~~~i~~a~  106 (252)
                      ..+||--||+|++++..|...    |                                    ...++|.|+++.+++.|.
T Consensus        52 ~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~A~  131 (249)
T d1o9ga_          52 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQAAR  131 (249)
T ss_dssp             EEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             CceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHHHH
Confidence            469999999999999877641    1                                    123578888888888774


Q ss_pred             H---HHHHHhhcCCCCc-ccEEEEeCCcccccC--ccCCCCcccEEEEeCCCCccccccccccc---cCHHHHHHHHHhh
Q 025470          107 E---RILALRVSNPGQY-QNISVVRTNSMKYIP--NYFEKGQLTKMFFLFPDPHFKEKNHRRRV---ISPHLLDEYAYVL  177 (252)
Q Consensus       107 ~---~~~~~~~~~~~~~-~nv~~~~~da~~~l~--~~~~~~s~d~i~~~fpdP~~k~~h~krr~---~~~~~l~~~~~~L  177 (252)
                      .   ++...      ++ .-+.+.+.|+.+.-+  +..++..-..|+.|.|  +-.+-..+...   ....+...+.++|
T Consensus       132 ~~r~n~~~A------gl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPP--YGERl~~~~~~~~~~~~~~~~~l~~~~  203 (249)
T d1o9ga_         132 RLRERLTAE------GGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLP--YGERTHWEGQVPGQPVAGLLRSLASAL  203 (249)
T ss_dssp             HHHHHHHHT------TSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECC--GGGSSSSSSCCCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHc------CCCceeeeeecchhccCcchhccCCCCCCEEEeCCC--ccccccccccchHHHHHHHHHHHHccC
Confidence            3   44332      44 358888888753221  1122345578888754  22111111111   1135666677777


Q ss_pred             cCCcEEEEEeC
Q 025470          178 GVGGIIYTITD  188 (252)
Q Consensus       178 kpgG~l~~~td  188 (252)
                       |+-.+++.|+
T Consensus       204 -p~~s~~~it~  213 (249)
T d1o9ga_         204 -PAHAVIAVTD  213 (249)
T ss_dssp             -CTTCEEEEEE
T ss_pred             -CCCcEEEEeC
Confidence             4555555564

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=94.31  E-value=0.1  Score=37.14  Aligned_cols=96  Identities=10%  Similarity=0.107  Sum_probs=58.4

Q ss_pred             CcccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc--ccCccCCCCcccEEEEe
Q 025470           74 CGFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK--YIPNYFEKGQLTKMFFL  149 (252)
Q Consensus        74 cG~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~--~l~~~~~~~s~d~i~~~  149 (252)
                      ||.|.++..+|+..  .+..|+.||.+++.++.+...           . ++.++.+|+.+  .|.. ..-...|.+++.
T Consensus         6 ~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~-----------~-~~~vi~Gd~~~~~~l~~-~~i~~a~~vv~~   72 (132)
T d1lssa_           6 AGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE-----------I-DALVINGDCTKIKTLED-AGIEDADMYIAV   72 (132)
T ss_dssp             ECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-----------C-SSEEEESCTTSHHHHHH-TTTTTCSEEEEC
T ss_pred             ECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh-----------h-hhhhccCcccchhhhhh-cChhhhhhhccc
Confidence            44577777777652  367899999999877654321           1 46788999763  1211 223457787776


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHH
Q 025470          150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGD  194 (252)
Q Consensus       150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~  194 (252)
                      .++.-.           .-++..+.+.+.+.-.+.. +.+.++..
T Consensus        73 t~~d~~-----------N~~~~~~~k~~~~~~iI~~-~~~~~~~~  105 (132)
T d1lssa_          73 TGKEEV-----------NLMSSLLAKSYGINKTIAR-ISEIEYKD  105 (132)
T ss_dssp             CSCHHH-----------HHHHHHHHHHTTCCCEEEE-CSSTTHHH
T ss_pred             CCcHHH-----------HHHHHHHHHHcCCceEEEE-ecCHHHHH
Confidence            666431           1255666777877755544 44444433

>d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Probable oxidoreductase At4g09670
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.83  E-value=0.31  Score=36.39  Aligned_cols=110  Identities=12%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             eEEEEcCcc-cHHHHHHHHHCCCCeEEEE-ecCHhHHHHHHHHHHHHhhcCCCCcc-cEEEEeCCcccccCccCCCCccc
Q 025470           68 QFADIGCGF-GGLLISLSTLFPEVLMIGM-ELRDKVTEYVKERILALRVSNPGQYQ-NISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~~lA~~~p~~~~iGi-Dis~~~i~~a~~~~~~~~~~~~~~~~-nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      .|.=||||. |..-+......++..++|| |.+++..+...   ..      .+.+ +.. +..|..+.    +.+..+|
T Consensus         3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~---~~------~~~~~~~~-~~~~~~~l----l~~~~iD   68 (184)
T d1ydwa1           3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFA---TA------NNYPESTK-IHGSYESL----LEDPEID   68 (184)
T ss_dssp             EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH---HH------TTCCTTCE-EESSHHHH----HHCTTCC
T ss_pred             EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccch---hc------ccccccee-ecCcHHHh----hhccccc
Confidence            466689995 6555555566788889886 88776433222   12      1332 233 24455443    3355789


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCCC
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~~  205 (252)
                      .|++.-|...              -++.+...|+.|=-+++.   +.+.+-+..+.+.....+.
T Consensus        69 ~v~I~tp~~~--------------h~~~~~~~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~  118 (184)
T d1ydwa1          69 ALYVPLPTSL--------------HVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEANGV  118 (184)
T ss_dssp             EEEECCCGGG--------------HHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTC
T ss_pred             eeeecccchh--------------hcchhhhhhhccceeecccccccCHHHHHHHHHHHHhhCC
Confidence            9998654422              344556666666555542   1244556666666665543

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=93.81  E-value=0.3  Score=39.33  Aligned_cols=120  Identities=10%  Similarity=0.011  Sum_probs=68.0

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKMF  147 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i~  147 (252)
                      .|||+=||.|.+...+-+.. -..+.++|+++.+++.-+.|           .+ -.++.+|+.+.-...+  ..+|.++
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG-~~~~~a~e~d~~a~~~~~~N-----------~~-~~~~~~Di~~~~~~~~--~~~dll~   66 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESN-----------HS-AKLIKGDISKISSDEF--PKCDGII   66 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHT-CEEEEEEECCHHHHHHHHHH-----------CC-SEEEESCTTTSCGGGS--CCCSEEE
T ss_pred             eEEEeCcCcCHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHH-----------CC-CCCccCChhhCCHhHc--ccccEEe
Confidence            48999999999998888773 22456999999876544332           12 2456788874322223  3589999


Q ss_pred             EeCCCC-ccccccccccccCH--HHHH---HHHHhhcCCcEEEEE------eCchHHHHHHHHHHhcC
Q 025470          148 FLFPDP-HFKEKNHRRRVISP--HLLD---EYAYVLGVGGIIYTI------TDVEELGDWMRSCLENH  203 (252)
Q Consensus       148 ~~fpdP-~~k~~h~krr~~~~--~~l~---~~~~~LkpgG~l~~~------td~~~~~~~~~~~~~~~  203 (252)
                      .-||.. +....+.+. .-.+  .++-   .+...++|.-.+.=-      .+...++..++..+...
T Consensus        67 ~g~PCq~fS~ag~~~g-~~d~r~~l~~~~~~~i~~~~Pk~~~lENV~~~~~~~~~~~~~~~l~~l~~l  133 (324)
T d1dcta_          67 GGPPCQSWSEGGSLRG-IDDPRGKLFYEYIRILKQKKPIFFLAENVKGMMAQRHNKAVQEFIQEFDNA  133 (324)
T ss_dssp             ECCCCTTTSSSSCCCC-SSSHHHHHHHHHHHHHHHHCCSEEEEEEEGGGGSGGGHHHHHHHHHHHHHH
T ss_pred             eccccccccccccccc-ccccccchHHHHHHHHHhhCCceeeccccccccccccchhhHHHHhHHhhC
Confidence            888754 433332221 1111  2222   244566785333211      12345566666666543

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.67  E-value=0.24  Score=36.42  Aligned_cols=105  Identities=16%  Similarity=0.128  Sum_probs=61.7

Q ss_pred             EEEEcCcc-cH-HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           69 FADIGCGF-GG-LLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        69 vLDIGcG~-G~-~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      |+=||||. |. ++..|.+..+...++|+|.+++.++.|.+.          +.-  .....+...     ......|.|
T Consensus         4 I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~----------~~~--~~~~~~~~~-----~~~~~~dlI   66 (171)
T d2g5ca2           4 VLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----------GII--DEGTTSIAK-----VEDFSPDFV   66 (171)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----------TSC--SEEESCGGG-----GGGTCCSEE
T ss_pred             EEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh----------hcc--hhhhhhhhh-----hhccccccc
Confidence            66699986 44 334555566678899999999888766531          221  111112111     112356888


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCc-hHHHHHHHHHHh
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDV-EELGDWMRSCLE  201 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~-~~~~~~~~~~~~  201 (252)
                      ++.-|..-           ...+++++...++++-.+.-++-. ....+.+.+.+.
T Consensus        67 ila~p~~~-----------~~~vl~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~  111 (171)
T d2g5ca2          67 MLSSPVRT-----------FREIAKKLSYILSEDATVTDQGSVKGKLVYDLENILG  111 (171)
T ss_dssp             EECSCHHH-----------HHHHHHHHHHHSCTTCEEEECCSCCTHHHHHHHHHHG
T ss_pred             cccCCchh-----------hhhhhhhhhccccccccccccccccHHHHHHHHHhhc
Confidence            77655321           235888999999988777655543 334444444443

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=93.39  E-value=0.081  Score=39.71  Aligned_cols=98  Identities=10%  Similarity=-0.096  Sum_probs=58.2

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccE-EEEeCCcc-cccCccCCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNI-SVVRTNSM-KYIPNYFEKG  141 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv-~~~~~da~-~~l~~~~~~~  141 (252)
                      +...||=+|||. |.+++.+|+......++++|.++..++.|++.          +.+.+ ..-..|.. .........+
T Consensus        27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l----------Ga~~~i~~~~~d~~~~~~~~~~~~~   96 (174)
T d1p0fa2          27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL----------GATECLNPKDYDKPIYEVICEKTNG   96 (174)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT----------TCSEEECGGGCSSCHHHHHHHHTTS
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc----------CCcEEEcCCCchhHHHHHHHHhcCC
Confidence            356899999997 55566777776667899999999988777541          33322 11112210 0011112234


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcC-CcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGV-GGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkp-gG~l~~~  186 (252)
                      -+|.++..-..              ...+......|++ +|++++.
T Consensus        97 G~d~vid~~g~--------------~~~~~~~~~~~~~~~G~~v~v  128 (174)
T d1p0fa2          97 GVDYAVECAGR--------------IETMMNALQSTYCGSGVTVVL  128 (174)
T ss_dssp             CBSEEEECSCC--------------HHHHHHHHHTBCTTTCEEEEC
T ss_pred             CCcEEEEcCCC--------------chHHHHHHHHHHHhcCceEEE
Confidence            57777765432              2466666666655 6888874

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.37  E-value=0.02  Score=45.89  Aligned_cols=66  Identities=11%  Similarity=-0.004  Sum_probs=42.3

Q ss_pred             cEEEEeCCcccccCccCCCCcccEEEEeCCCCcccc---ccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          122 NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKE---KNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       122 nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~---~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +=.|+.+|..+.|. .++++|||.|+...|=-.-+.   .+..----...++.++.++|||||.+++-.+
T Consensus         4 ~~~~~~~D~le~l~-~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~   72 (279)
T d1eg2a_           4 RHVYDVCDCLDTLA-KLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGG   72 (279)
T ss_dssp             EEEEEECCHHHHHH-TSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cceEEechHHHHHh-hCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecC
Confidence            34578889887775 488999999998665111000   0100000014578899999999999988543

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.076  Score=43.57  Aligned_cols=125  Identities=10%  Similarity=0.117  Sum_probs=68.1

Q ss_pred             eEEEEcCcccHHHHHHHHHCCC-CeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           68 QFADIGCGFGGLLISLSTLFPE-VLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~-~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      .|||+-||.|.+...|-...=+ ..+.++|+++.+++.-+.+           .++..++..|+.+.....++...+|.+
T Consensus         4 kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n-----------~~~~~~~~~di~~~~~~~~~~~~~Dll   72 (343)
T d1g55a_           4 RVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-----------FPHTQLLAKTIEGITLEEFDRLSFDMI   72 (343)
T ss_dssp             EEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-----------CTTSCEECSCGGGCCHHHHHHHCCSEE
T ss_pred             EEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH-----------CCCCCcccCchhhCCHhHcCCCCccEE
Confidence            6999999999998888776322 2367999999876544332           244566778876432223333478999


Q ss_pred             EEeCCCC-cccccccccccc-CHHHHHHHHHhh-----cCCcEEEEEeCch-----HHHHHHHHHHhcCCC
Q 025470          147 FFLFPDP-HFKEKNHRRRVI-SPHLLDEYAYVL-----GVGGIIYTITDVE-----ELGDWMRSCLENHPM  205 (252)
Q Consensus       147 ~~~fpdP-~~k~~h~krr~~-~~~~l~~~~~~L-----kpgG~l~~~td~~-----~~~~~~~~~~~~~~~  205 (252)
                      +..+|.. +....+.+..-- ...++-++.+++     +|.  +++.-+++     ...+.+.+.|...++
T Consensus        73 ~ggpPCq~fS~ag~~~~~~d~r~~l~~~~~~~i~~~~~kPk--~~i~ENV~~l~~~~~~~~i~~~l~~~GY  141 (343)
T d1g55a_          73 LMSPPCQPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPK--YILLENVKGFEVSSTRDLLIQTIENCGF  141 (343)
T ss_dssp             EECCC------------------CHHHHHHHHGGGCSSCCS--EEEEEEETTGGGSHHHHHHHHHHHHTTE
T ss_pred             EeecccccccccccccccccccccccchhhhhHhhhcCCCc--eeeeeccCCcccchhhHHHHhhhhcccc
Confidence            9888844 433332211100 112444444444     353  34433433     235667777776654

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=93.00  E-value=0.17  Score=35.73  Aligned_cols=95  Identities=8%  Similarity=-0.063  Sum_probs=57.8

Q ss_pred             cccHHHHHHHHHC--CCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCC---CCcccEEEEe
Q 025470           75 GFGGLLISLSTLF--PEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFE---KGQLTKMFFL  149 (252)
Q Consensus        75 G~G~~~~~lA~~~--p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~---~~s~d~i~~~  149 (252)
                      |.|.++..+|+..  -+..|+.+|.+++.++.+..          .+   ..++.+|+.+ . ..+.   -...|.+++.
T Consensus         7 G~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~----------~~---~~~~~gd~~~-~-~~l~~a~i~~a~~vi~~   71 (134)
T d2hmva1           7 GLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYAS----------YA---THAVIANATE-E-NELLSLGIRNFEYVIVA   71 (134)
T ss_dssp             CCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTT----------TC---SEEEECCTTC-T-THHHHHTGGGCSEEEEC
T ss_pred             CCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHH----------hC---Ccceeeeccc-c-hhhhccCCccccEEEEE
Confidence            4456666666652  36789999999987654321          12   3456678753 1 1221   2356788888


Q ss_pred             CCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHH
Q 025470          150 FPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDW  195 (252)
Q Consensus       150 fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~  195 (252)
                      .++.-..           ..+-.+.+.+.+.+.++..+.+.++.+.
T Consensus        72 ~~~~~~~-----------~~~~~~~~~~~~~~~iiar~~~~~~~~~  106 (134)
T d2hmva1          72 IGANIQA-----------STLTTLLLKELDIPNIWVKAQNYYHHKV  106 (134)
T ss_dssp             CCSCHHH-----------HHHHHHHHHHTTCSEEEEECCSHHHHHH
T ss_pred             cCchHHh-----------HHHHHHHHHHcCCCcEEeecccHhHHHH
Confidence            7765321           2444555556677888888887776553

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=92.85  E-value=0.12  Score=38.38  Aligned_cols=97  Identities=13%  Similarity=0.053  Sum_probs=58.8

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCccc---ccCccCCC
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMK---YIPNYFEK  140 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~---~l~~~~~~  140 (252)
                      +...||=+|+|. |.+++.+++..-...++++|.+++..+.+.+.          +...+- ...+..+   ........
T Consensus        28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~----------Ga~~~i-~~~~~~~~~~~~~~~~~~   96 (176)
T d2jhfa2          28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV----------GATECV-NPQDYKKPIQEVLTEMSN   96 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT----------TCSEEE-CGGGCSSCHHHHHHHHTT
T ss_pred             CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh----------CCeeEE-ecCCchhHHHHHHHHHhc
Confidence            356888899965 45666777777678999999999887766542          333221 1111111   11111234


Q ss_pred             CcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCC-cEEEEE
Q 025470          141 GQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVG-GIIYTI  186 (252)
Q Consensus       141 ~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lkpg-G~l~~~  186 (252)
                      +-+|.++-....+              ..++.....+++| |.+.+.
T Consensus        97 ~G~D~vid~~G~~--------------~~~~~a~~~~~~~~g~~~~~  129 (176)
T d2jhfa2          97 GGVDFSFEVIGRL--------------DTMVTALSCCQEAYGVSVIV  129 (176)
T ss_dssp             SCBSEEEECSCCH--------------HHHHHHHHHBCTTTCEEEEC
T ss_pred             CCCCEEEecCCch--------------hHHHHHHHHHhcCCcceEEe
Confidence            5688877654332              4777788888886 555554

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=92.79  E-value=0.13  Score=38.02  Aligned_cols=94  Identities=13%  Similarity=0.098  Sum_probs=58.6

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeC-C----cccccCccCC
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRT-N----SMKYIPNYFE  139 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~-d----a~~~l~~~~~  139 (252)
                      ...||=+|||. |.+++.+|+..-...++++|.++...+.+++    +      +.+.+  +.. +    +...+.. ..
T Consensus        29 G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~----l------Ga~~~--i~~~~~~~~~~~~~~~-~~   95 (176)
T d2fzwa2          29 GSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKE----F------GATEC--INPQDFSKPIQEVLIE-MT   95 (176)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH----H------TCSEE--ECGGGCSSCHHHHHHH-HT
T ss_pred             CCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHH----h------CCcEE--EeCCchhhHHHHHHHH-Hc
Confidence            55788888874 5666777777666789999999988776653    2      43322  211 1    1111111 12


Q ss_pred             CCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          140 KGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       140 ~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      .+-+|.|+-.-..              ...++.....+++||.+.+.
T Consensus        96 ~~g~D~vid~~G~--------------~~~~~~~~~~~~~g~~~~~v  128 (176)
T d2fzwa2          96 DGGVDYSFECIGN--------------VKVMRAALEACHKGWGVSVV  128 (176)
T ss_dssp             TSCBSEEEECSCC--------------HHHHHHHHHTBCTTTCEEEE
T ss_pred             CCCCcEeeecCCC--------------HHHHHHHHHhhcCCceeEEE
Confidence            3457888765432              24888899999999777654

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.75  E-value=0.077  Score=41.65  Aligned_cols=77  Identities=12%  Similarity=0.122  Sum_probs=47.5

Q ss_pred             EEEeCCcccccCccCCCCcccEEEEeCCCCccccccccccc-------cCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          124 SVVRTNSMKYIPNYFEKGQLTKMFFLFPDPHFKEKNHRRRV-------ISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       124 ~~~~~da~~~l~~~~~~~s~d~i~~~fpdP~~k~~h~krr~-------~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      ++.++|..+.|. .+++++||.|+...|=.-.+ .......       .....++++.++|+|||.+++..+..... .+
T Consensus         6 ~i~~gDcle~l~-~lpd~sVdliitdPPY~~~~-~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~~~~~~-~~   82 (256)
T d1g60a_           6 KIHQMNCFDFLD-QVENKSVQLAVIDPPYNLSK-ADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNTPFNCA-FI   82 (256)
T ss_dssp             SEEECCHHHHHH-HSCTTCEEEEEECCCCSSCS-SGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEECHHHHH-HH
T ss_pred             EEEeccHHHHHh-hCcCCCcCEEEECCCCCCCc-CcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccCchhhh-hh
Confidence            377899887665 47899999999865511000 0000000       01247889999999999998777655443 34


Q ss_pred             HHHHhcC
Q 025470          197 RSCLENH  203 (252)
Q Consensus       197 ~~~~~~~  203 (252)
                      ...+...
T Consensus        83 ~~~~~~~   89 (256)
T d1g60a_          83 CQYLVSK   89 (256)
T ss_dssp             HHHHHHT
T ss_pred             hhhhhcc
Confidence            4444443

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=92.68  E-value=0.038  Score=44.94  Aligned_cols=66  Identities=12%  Similarity=-0.013  Sum_probs=43.9

Q ss_pred             cEEEEeCCcccccCccCCCCcccEEEEeCCCC-----c-cccccccccccCHHHHHHHHHhhcCCcEEEEEeC
Q 025470          122 NISVVRTNSMKYIPNYFEKGQLTKMFFLFPDP-----H-FKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITD  188 (252)
Q Consensus       122 nv~~~~~da~~~l~~~~~~~s~d~i~~~fpdP-----~-~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td  188 (252)
                      +=.++++|..+.|. .+++++||.|++..|=-     . ....|..-.--....+.++.++|+++|.+++..+
T Consensus        12 ~~~l~~GD~le~l~-~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~~   83 (320)
T d1booa_          12 NGSMYIGDSLELLE-SFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG   83 (320)
T ss_dssp             SEEEEESCHHHHGG-GSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             CCEEEehhHHHHHh-hCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccccc
Confidence            34889999987675 48899999999975511     0 0001111000123578999999999999998654

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.36  E-value=0.13  Score=37.78  Aligned_cols=94  Identities=14%  Similarity=0.113  Sum_probs=55.1

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~  143 (252)
                      ...||=+|||. |..++.+|+. .+..++++|.++..++.+++    +      +.+.+.... .|..+.+.. ..+ ..
T Consensus        28 g~~vlv~G~G~iG~~a~~~a~~-~g~~v~~~~~~~~r~~~~k~----~------Ga~~~~~~~~~~~~~~~~~-~~~-~~   94 (168)
T d1rjwa2          28 GEWVAIYGIGGLGHVAVQYAKA-MGLNVVAVDIGDEKLELAKE----L------GADLVVNPLKEDAAKFMKE-KVG-GV   94 (168)
T ss_dssp             TCEEEEECCSTTHHHHHHHHHH-TTCEEEEECSCHHHHHHHHH----T------TCSEEECTTTSCHHHHHHH-HHS-SE
T ss_pred             CCEEEEeecccchhhhhHHHhc-CCCeEeccCCCHHHhhhhhh----c------Ccceecccccchhhhhccc-ccC-CC
Confidence            45677789998 5555566665 45689999999988776643    1      433221100 111111111 112 23


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +.++..-.              ....+....+.|+|||++++.
T Consensus        95 ~~~v~~~~--------------~~~~~~~a~~~l~~~G~i~~~  123 (168)
T d1rjwa2          95 HAAVVTAV--------------SKPAFQSAYNSIRRGGACVLV  123 (168)
T ss_dssp             EEEEESSC--------------CHHHHHHHHHHEEEEEEEEEC
T ss_pred             ceEEeecC--------------CHHHHHHHHHHhccCCceEec
Confidence            44443322              235889999999999999885

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=92.27  E-value=0.19  Score=36.52  Aligned_cols=105  Identities=9%  Similarity=-0.137  Sum_probs=65.4

Q ss_pred             eEEEEcCcccHHHHHHHHH--CCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccC---CCCc
Q 025470           68 QFADIGCGFGGLLISLSTL--FPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYF---EKGQ  142 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~--~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~---~~~s  142 (252)
                      .++=+|+  |.++..+++.  ..+..++.||.+++......   ...      ...++.++.+|+.+.  ..+   .-..
T Consensus         5 HiII~G~--g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~---~~~------~~~~~~vi~Gd~~d~--~~L~~a~i~~   71 (153)
T d1id1a_           5 HFIVCGH--SILAINTILQLNQRGQNVTVISNLPEDDIKQL---EQR------LGDNADVIPGDSNDS--SVLKKAGIDR   71 (153)
T ss_dssp             CEEEECC--SHHHHHHHHHHHHTTCCEEEEECCCHHHHHHH---HHH------HCTTCEEEESCTTSH--HHHHHHTTTT
T ss_pred             EEEEECC--CHHHHHHHHHHHHcCCCEEEEeccchhHHHHH---HHh------hcCCcEEEEccCcch--HHHHHhcccc
Confidence            4666666  5666666654  23678999999986432222   221      124688999998631  122   2345


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHH
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWM  196 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~  196 (252)
                      .+.+++..++...           .-.+....+-+.|...++..++++++...+
T Consensus        72 a~~vi~~~~~d~~-----------n~~~~~~~r~~~~~~~iia~~~~~~~~~~l  114 (153)
T d1id1a_          72 CRAILALSDNDAD-----------NAFVVLSAKDMSSDVKTVLAVSDSKNLNKI  114 (153)
T ss_dssp             CSEEEECSSCHHH-----------HHHHHHHHHHHTSSSCEEEECSSGGGHHHH
T ss_pred             CCEEEEccccHHH-----------HHHHHHHHHHhCCCCceEEEEcCHHHHHHH
Confidence            7788887766432           135556677788888888888887775543

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=92.00  E-value=0.35  Score=36.16  Aligned_cols=97  Identities=10%  Similarity=0.108  Sum_probs=62.2

Q ss_pred             CceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCccc
Q 025470           66 KIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        66 ~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d  144 (252)
                      ...||=||+|. |..++..|... +..+..+|.+.+.++......          ..++.....+-. .+...+.  ..|
T Consensus        32 pa~V~ViGaGvaG~~A~~~A~~l-GA~V~~~D~~~~~l~~l~~~~----------~~~~~~~~~~~~-~l~~~~~--~aD   97 (168)
T d1pjca1          32 PGKVVILGGGVVGTEAAKMAVGL-GAQVQIFDINVERLSYLETLF----------GSRVELLYSNSA-EIETAVA--EAD   97 (168)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHHHH----------GGGSEEEECCHH-HHHHHHH--TCS
T ss_pred             CcEEEEECCChHHHHHHHHHhhC-CCEEEEEeCcHHHHHHHHHhh----------cccceeehhhhh-hHHHhhc--cCc
Confidence            45899999998 77788888886 679999999999887655432          235666666543 3433332  457


Q ss_pred             EEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEE
Q 025470          145 KMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIY  184 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~  184 (252)
                      .|+-.---|-.+.    ..+++    +++.+.+|||.+++
T Consensus        98 ivI~aalipG~~a----P~lIt----~~mv~~Mk~GSVIV  129 (168)
T d1pjca1          98 LLIGAVLVPGRRA----PILVP----ASLVEQMRTGSVIV  129 (168)
T ss_dssp             EEEECCCCTTSSC----CCCBC----HHHHTTSCTTCEEE
T ss_pred             EEEEeeecCCccc----Ceeec----HHHHhhcCCCcEEE
Confidence            7764322222111    12344    45667899999885

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=91.76  E-value=0.16  Score=38.12  Aligned_cols=43  Identities=19%  Similarity=0.091  Sum_probs=34.6

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~  107 (252)
                      +...||=+|||. |.+++.+++.....+++++|.+++.++.|++
T Consensus        29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~   72 (176)
T d1d1ta2          29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMA   72 (176)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHh
Confidence            356899999997 5666777777666789999999999888765

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=91.50  E-value=1.2  Score=35.72  Aligned_cols=122  Identities=10%  Similarity=0.057  Sum_probs=71.1

Q ss_pred             ceEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           67 IQFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      -.|||+=||.|.+...|-+.. -..+.++|+++.+++.-+.|..           +.  .++|+.+.-...+  ..+|.+
T Consensus        12 lrv~~lFsG~Gg~~~gl~~aG-~~~v~a~e~d~~a~~~~~~N~~-----------~~--~~~Di~~~~~~~~--~~~Dll   75 (327)
T d2c7pa1          12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNFG-----------EK--PEGDITQVNEKTI--PDHDIL   75 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHHS-----------CC--CBSCGGGSCGGGS--CCCSEE
T ss_pred             CeEEEECccccHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHCC-----------CC--CcCchhcCchhhc--ceeeee
Confidence            479999999999999987773 2246789999988776555431           11  2477764222222  358999


Q ss_pred             EEeCCC-Cccccccccc----c-ccCHHHHHHHHHhhcCCcEEEE------EeCchHHHHHHHHHHhcCCC
Q 025470          147 FFLFPD-PHFKEKNHRR----R-VISPHLLDEYAYVLGVGGIIYT------ITDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       147 ~~~fpd-P~~k~~h~kr----r-~~~~~~l~~~~~~LkpgG~l~~------~td~~~~~~~~~~~~~~~~~  205 (252)
                      +.-+|. |+....+.+.    | -.-..++ .+.+.++|.=.+.=      ..+....+..+.+.+.+.++
T Consensus        76 ~ggpPCq~fS~ag~~~g~~d~r~~l~~~~~-~~i~~~kP~~~~lENV~~~~~~~~~~~~~~i~~~l~~lGY  145 (327)
T d2c7pa1          76 CAGFPCQAFSISGKQKGFEDSRGTLFFDIA-RIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDY  145 (327)
T ss_dssp             EEECCCTTTCTTSCCCGGGSTTSCHHHHHH-HHHHHHCCSEEEEEEEGGGGTGGGGHHHHHHHHHHHHTTB
T ss_pred             ecccccchhhhhhhhcCCcccchhHHHHHH-HHHhccCCcEEecccchhhhhhccchhhHHhhhHHHhcCC
Confidence            998884 4443322211    1 1112233 23345677532221      12344567777788877654

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.43  E-value=0.17  Score=37.63  Aligned_cols=95  Identities=11%  Similarity=0.067  Sum_probs=59.0

Q ss_pred             CceEEEEc--CcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCc
Q 025470           66 KIQFADIG--CGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQ  142 (252)
Q Consensus        66 ~~~vLDIG--cG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s  142 (252)
                      +..||=.|  .|.|.+++.+|+.. ++.++++..+++..+.+++          .+.+.+-... .|..+.+.......-
T Consensus        26 g~~VlI~ga~g~vG~~~iqla~~~-g~~vi~~~~~~~~~~~l~~----------~Ga~~vi~~~~~~~~~~v~~~t~~~g   94 (183)
T d1pqwa_          26 GERVLIHSATGGVGMAAVSIAKMI-GARIYTTAGSDAKREMLSR----------LGVEYVGDSRSVDFADEILELTDGYG   94 (183)
T ss_dssp             TCEEEETTTTSHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHT----------TCCSEEEETTCSTHHHHHHHHTTTCC
T ss_pred             CCEEEEECCCCCcccccchhhccc-cccceeeeccccccccccc----------ccccccccCCccCHHHHHHHHhCCCC
Confidence            45777766  34588888999875 6788888888765554432          2444332111 122222222223456


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      +|.|+-...               ...++.+.+.|+++|+++..
T Consensus        95 ~d~v~d~~g---------------~~~~~~~~~~l~~~G~~v~~  123 (183)
T d1pqwa_          95 VDVVLNSLA---------------GEAIQRGVQILAPGGRFIEL  123 (183)
T ss_dssp             EEEEEECCC---------------THHHHHHHHTEEEEEEEEEC
T ss_pred             EEEEEeccc---------------chHHHHHHHHhcCCCEEEEE
Confidence            888875432               14788899999999999875

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=91.28  E-value=0.94  Score=37.87  Aligned_cols=163  Identities=14%  Similarity=0.133  Sum_probs=86.1

Q ss_pred             eEEEEcCcccHHHHH--------HHH--------HCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc
Q 025470           68 QFADIGCGFGGLLIS--------LST--------LFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM  131 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~--------lA~--------~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~  131 (252)
                      +|.|+||.+|..++.        +.+        ..|+.+++--|+-.+=....   ++.+.. .....+++ |+.+-..
T Consensus        54 ~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtL---F~~L~~-~~~~~~~~-f~~gvpG  128 (359)
T d1m6ex_          54 AIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAI---FRSLPI-ENDVDGVC-FINGVPG  128 (359)
T ss_dssp             CCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHH---HTTTTT-SCSCTTCE-EEEEEES
T ss_pred             EEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHH---HHhccc-cccCCCCe-EEEecCC
Confidence            699999999987742        211        13556677777655422211   111100 01111222 2222222


Q ss_pred             cccCccCCCCcccEEEEeCCCCcccc---------cc--ccc---ccc-----------CHHHHHHHHHhhcCCcEEEEE
Q 025470          132 KYIPNYFEKGQLTKMFFLFPDPHFKE---------KN--HRR---RVI-----------SPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       132 ~~l~~~~~~~s~d~i~~~fpdP~~k~---------~h--~kr---r~~-----------~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      -+-...||++|++.++..+.-.|-.+         .+  ...   .-+           -..||+.=++-|+|||++++.
T Consensus       129 SFY~rLfP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~  208 (359)
T d1m6ex_         129 SFYGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLT  208 (359)
T ss_dssp             CSSSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEE
T ss_pred             chhhhcCCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEE
Confidence            13456789999999998887666432         01  000   000           123777777888999999996


Q ss_pred             eCc--------------hHHHHHHHHHHhcCCCcccccccccccCccccCCCCCCHHHHHHHHcCC
Q 025470          187 TDV--------------EELGDWMRSCLENHPMFEALTKEELEADPVVKLLSSATEEGQKVARNGG  238 (252)
Q Consensus       187 td~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~t~~e~~~~~~G~  238 (252)
                      .-.              -++...++..+...+..+....+.+. -|.  +.....+++..+.+.|.
T Consensus       209 ~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn-~P~--Y~ps~eEv~~~ie~~gs  271 (359)
T d1m6ex_         209 ILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFN-IPQ--YTPSPTEVEAEILKEGS  271 (359)
T ss_dssp             EEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGC-CCC--BCCCSHHHHHHHHHTTT
T ss_pred             EeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhcc-Ccc--ccCCHHHHHHHhccCCC
Confidence            511              14555556666666654433222222 122  22344467777777776

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=91.24  E-value=0.15  Score=37.93  Aligned_cols=95  Identities=7%  Similarity=0.030  Sum_probs=58.2

Q ss_pred             CceEEEEcCc--ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe--CCcccccCccCCCC
Q 025470           66 KIQFADIGCG--FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR--TNSMKYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG--~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~--~da~~~l~~~~~~~  141 (252)
                      ...||=+|+|  .|.+++.+|+.. ++++++++.+++..+.+++    +      +.+.+ +..  .|..+.+...-...
T Consensus        29 g~~Vlv~ga~g~vG~~~iqlak~~-Ga~Vi~~~~s~~k~~~~~~----l------Ga~~v-i~~~~~d~~~~v~~~t~g~   96 (179)
T d1qora2          29 DEQFLFHAAAGGVGLIACQWAKAL-GAKLIGTVGTAQKAQSALK----A------GAWQV-INYREEDLVERLKEITGGK   96 (179)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHH-TCEEEEEESSHHHHHHHHH----H------TCSEE-EETTTSCHHHHHHHHTTTC
T ss_pred             CCEEEEEccccccchHHHHHHHHh-CCeEeecccchHHHHHHHh----c------CCeEE-EECCCCCHHHHHHHHhCCC
Confidence            4577777555  588888999885 6799999999988776643    2      43322 211  22222222111234


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      -+|.|+- ...+              ..+......|+++|++++..
T Consensus        97 g~d~v~d-~~g~--------------~~~~~~~~~l~~~G~~v~~g  127 (179)
T d1qora2          97 KVRVVYD-SVGR--------------DTWERSLDCLQRRGLMVSFG  127 (179)
T ss_dssp             CEEEEEE-CSCG--------------GGHHHHHHTEEEEEEEEECC
T ss_pred             CeEEEEe-CccH--------------HHHHHHHHHHhcCCeeeecc
Confidence            5665543 2221              36778899999999987743

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=91.20  E-value=0.18  Score=37.31  Aligned_cols=116  Identities=13%  Similarity=0.184  Sum_probs=60.1

Q ss_pred             eEEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCC--CCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNP--GQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~--~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|-=||+|.-..+++..-...+..|+.+|.++..++...+.- .......  ........+..|..+.+      ...|.
T Consensus         3 ~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~e~~------~~aD~   75 (184)
T d1bg6a2           3 TYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRG-AIIAEGPGLAGTAHPDLLTSDIGLAV------KDADV   75 (184)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHT-SEEEESSSCCEEECCSEEESCHHHHH------TTCSE
T ss_pred             EEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcC-CCchhhhhhhhhhhhhhhhhhhHhHh------cCCCE
Confidence            466688887554443333333679999999987665543211 0000000  00000111112222212      35688


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCchHHHHHHHHHHh
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVEELGDWMRSCLE  201 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~~~~~~~~~~~~  201 (252)
                      |++.-|.+..           ..+++++...|+++-.+++......-...+...+.
T Consensus        76 iii~v~~~~~-----------~~~~~~i~~~l~~~~~iv~~~g~~~~~~~~~~~~~  120 (184)
T d1bg6a2          76 ILIVVPAIHH-----------ASIAANIASYISEGQLIILNPGATGGALEFRKILR  120 (184)
T ss_dssp             EEECSCGGGH-----------HHHHHHHGGGCCTTCEEEESSCCSSHHHHHHHHHH
T ss_pred             EEEEEchhHH-----------HHHHHHhhhccCCCCEEEEeCCCCccHHHHHHHHH
Confidence            8887654432           36999999999998877654433222333344443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=90.51  E-value=0.26  Score=41.97  Aligned_cols=47  Identities=13%  Similarity=0.063  Sum_probs=39.6

Q ss_pred             CCceEEEEcCcccHHHHHHHHHCC--CCeEEEEecCHhHHHHHHHHHHH
Q 025470           65 KKIQFADIGCGFGGLLISLSTLFP--EVLMIGMELRDKVTEYVKERILA  111 (252)
Q Consensus        65 ~~~~vLDIGcG~G~~~~~lA~~~p--~~~~iGiDis~~~i~~a~~~~~~  111 (252)
                      ++.+++|||+-.|.++..++...+  ...++++|.++...+..++++..
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~  260 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRR  260 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHH
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHh
Confidence            467999999999999998887654  35899999999998888877754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.44  E-value=1.1  Score=33.81  Aligned_cols=106  Identities=11%  Similarity=0.094  Sum_probs=54.2

Q ss_pred             EEEEcCcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHH------------HHHHhhcCCCCcccEEEEeCCcccccCc
Q 025470           69 FADIGCGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKER------------ILALRVSNPGQYQNISVVRTNSMKYIPN  136 (252)
Q Consensus        69 vLDIGcG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~------------~~~~~~~~~~~~~nv~~~~~da~~~l~~  136 (252)
                      |-=||+|.=....+++-...+..|+|+|++++.++...+.            +...     ....++ ....|..+.+  
T Consensus         3 I~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~-----~~~~~~-~~~~~~~~~i--   74 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQG-----RQTGRL-SGTTDFKKAV--   74 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHH-----HHTTCE-EEESCHHHHH--
T ss_pred             EEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhh-----hccccc-ccCCCHHHHH--
Confidence            4557888744443333333367899999999876543311            0000     000011 1122222111  


Q ss_pred             cCCCCcccEEEEeCCCCccccccccccccCHHHHHHHHHhhc---CCcEEEEEe
Q 025470          137 YFEKGQLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLG---VGGIIYTIT  187 (252)
Q Consensus       137 ~~~~~s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~Lk---pgG~l~~~t  187 (252)
                          ...|.+++..|.|-......... .....++.+...++   ++..+++.+
T Consensus        75 ----~~~d~i~i~VpTP~~~~~~~d~~-~~~~~~~~i~~~~~~~~~~~liii~S  123 (202)
T d1mv8a2          75 ----LDSDVSFICVGTPSKKNGDLDLG-YIETVCREIGFAIREKSERHTVVVRS  123 (202)
T ss_dssp             ----HTCSEEEECCCCCBCTTSSBCCH-HHHHHHHHHHHHHTTCCSCCEEEECS
T ss_pred             ----hhCCEEEEecCccccccccccch-hhhhhhhhhhheeecccCCcceeecc
Confidence                13588999989886544333222 12245555555554   667777754

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=88.11  E-value=0.31  Score=36.07  Aligned_cols=90  Identities=12%  Similarity=0.089  Sum_probs=55.1

Q ss_pred             CceEEEEcC-cc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGC-GF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGc-G~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      +..||=.|. |. |..++.+|+.. ++.+++++.+++..+.+.+    +      +.+.+ +...+....+.   ....+
T Consensus        28 g~~VlI~ga~G~vG~~aiqlak~~-G~~vi~~~~~~~~~~~~~~----l------Ga~~~-i~~~~~~~~~~---~~~g~   92 (171)
T d1iz0a2          28 GEKVLVQAAAGALGTAAVQVARAM-GLRVLAAASRPEKLALPLA----L------GAEEA-ATYAEVPERAK---AWGGL   92 (171)
T ss_dssp             TCEEEESSTTBHHHHHHHHHHHHT-TCEEEEEESSGGGSHHHHH----T------TCSEE-EEGGGHHHHHH---HTTSE
T ss_pred             CCEEEEEeccccchhhhhhhhccc-ccccccccccccccccccc----c------cccee-eehhhhhhhhh---ccccc
Confidence            557777784 44 78888899886 5789999999876665542    1      44433 21222211111   13447


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+- ..-               ..+....+.|+|+|++++.
T Consensus        93 D~v~d-~~G---------------~~~~~~~~~l~~~G~~v~~  119 (171)
T d1iz0a2          93 DLVLE-VRG---------------KEVEESLGLLAHGGRLVYI  119 (171)
T ss_dssp             EEEEE-CSC---------------TTHHHHHTTEEEEEEEEEC
T ss_pred             ccccc-ccc---------------hhHHHHHHHHhcCCcEEEE
Confidence            76653 211               1456778899999999874

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.03  E-value=0.69  Score=34.54  Aligned_cols=95  Identities=13%  Similarity=0.098  Sum_probs=58.9

Q ss_pred             CceEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcc
Q 025470           66 KIQFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQL  143 (252)
Q Consensus        66 ~~~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~  143 (252)
                      ...||=.|.  |.|.+++.+|+.. ++.++++--+++-.+.+++    +      +.+.+--...+..+.. .......+
T Consensus        32 g~~VLI~gaaGGVG~~aiQlak~~-Ga~Viat~~s~~k~~~~~~----l------Ga~~vi~~~~~~~~~~-~~~~~~gv   99 (176)
T d1xa0a2          32 RGPVLVTGATGGVGSLAVSMLAKR-GYTVEASTGKAAEHDYLRV----L------GAKEVLAREDVMAERI-RPLDKQRW   99 (176)
T ss_dssp             GCCEEESSTTSHHHHHHHHHHHHT-TCCEEEEESCTTCHHHHHH----T------TCSEEEECC----------CCSCCE
T ss_pred             CCEEEEEeccchHHHHHHHHHHHc-CCceEEecCchHHHHHHHh----c------ccceeeecchhHHHHH-HHhhccCc
Confidence            346777774  5688889999886 7889999988876666543    1      4433221111111111 12335678


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEe
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTIT  187 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~t  187 (252)
                      |.|+=+...               ..+....+.|++||+++...
T Consensus       100 D~vid~vgg---------------~~~~~~l~~l~~~Griv~~G  128 (176)
T d1xa0a2         100 AAAVDPVGG---------------RTLATVLSRMRYGGAVAVSG  128 (176)
T ss_dssp             EEEEECSTT---------------TTHHHHHHTEEEEEEEEECS
T ss_pred             CEEEEcCCc---------------hhHHHHHHHhCCCceEEEee
Confidence            877754322               37788999999999998864

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=86.78  E-value=0.61  Score=38.93  Aligned_cols=40  Identities=13%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             ceEEEEcCcccHHHHHHHHHC-------CCCeEEEEecCHhHHHHHH
Q 025470           67 IQFADIGCGFGGLLISLSTLF-------PEVLMIGMELRDKVTEYVK  106 (252)
Q Consensus        67 ~~vLDIGcG~G~~~~~lA~~~-------p~~~~iGiDis~~~i~~a~  106 (252)
                      -.|||+|+|+|.++..+....       ....++-+|.|+...+.-+
T Consensus        81 ~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~  127 (365)
T d1zkda1          81 LRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQ  127 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHH
T ss_pred             ceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHH
Confidence            479999999999988776642       2456899999998665443

>d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glucose-fructose oxidoreductase, N-terminal domain
species: Zymomonas mobilis [TaxId: 542]

Probab=86.58  E-value=1.4  Score=33.85  Aligned_cols=111  Identities=8%  Similarity=0.029  Sum_probs=60.9

Q ss_pred             ceEEEEcCcccH--HHHHHHHHCCCCeEEEE-ecCHhHHHHHHHHHHHHhhcCCCCcccEEE-EeCCcccccCccCCCCc
Q 025470           67 IQFADIGCGFGG--LLISLSTLFPEVLMIGM-ELRDKVTEYVKERILALRVSNPGQYQNISV-VRTNSMKYIPNYFEKGQ  142 (252)
Q Consensus        67 ~~vLDIGcG~G~--~~~~lA~~~p~~~~iGi-Dis~~~i~~a~~~~~~~~~~~~~~~~nv~~-~~~da~~~l~~~~~~~s  142 (252)
                      -.|-=||||.-.  +.+...+..++..++|| |.+++..+.+.+.+         +++...+ ...|..+    .+.+..
T Consensus        34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~---------~i~~~~~~~~~d~~e----ll~~~~  100 (221)
T d1h6da1          34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEY---------GVDPRKIYDYSNFDK----IAKDPK  100 (221)
T ss_dssp             EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHT---------TCCGGGEECSSSGGG----GGGCTT
T ss_pred             EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhh---------ccccccccccCchhh----hccccc
Confidence            478889998532  22333344567778865 88887655443321         3332222 1244443    344668


Q ss_pred             ccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCC
Q 025470          143 LTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHP  204 (252)
Q Consensus       143 ~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~  204 (252)
                      +|.|++.-|+..              -...+.+.|+-|=.+++.   +.+.+-...+.+.....+
T Consensus       101 iD~V~I~tp~~~--------------H~~~~~~al~~gk~v~~EKPla~~~~e~~~l~~~a~~~~  151 (221)
T d1h6da1         101 IDAVYIILPNSL--------------HAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKAAN  151 (221)
T ss_dssp             CCEEEECSCGGG--------------HHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHHHT
T ss_pred             ceeeeeccchhh--------------hhhHHHHhhhcchhhhcCCCccCCHHHHHHHHHHHHhcC
Confidence            999998766543              234455556666555543   234444555665555443

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=86.13  E-value=0.87  Score=33.68  Aligned_cols=94  Identities=11%  Similarity=0.017  Sum_probs=59.9

Q ss_pred             CceEEEEcCc--ccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcc--cccCccCCCC
Q 025470           66 KIQFADIGCG--FGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSM--KYIPNYFEKG  141 (252)
Q Consensus        66 ~~~vLDIGcG--~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~--~~l~~~~~~~  141 (252)
                      ...||=.|.|  .|..++.+|+.. +++++++..+++.++.+.+          .+.+.+ +...|..  +.+.......
T Consensus        30 G~~VlV~ga~ggvG~~aiqlak~~-Ga~vi~~~~~~~~~~~~~~----------~Ga~~v-i~~~~~~~~~~~~~~~~~~   97 (182)
T d1v3va2          30 GETVLVSAAAGAVGSVVGQIAKLK-GCKVVGAAGSDEKIAYLKQ----------IGFDAA-FNYKTVNSLEEALKKASPD   97 (182)
T ss_dssp             SCEEEESSTTSHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHH----------TTCSEE-EETTSCSCHHHHHHHHCTT
T ss_pred             CCEEEEEeCCCchhHHHHHHHHcc-CCEEEEeCCCHHHHHHHHh----------hhhhhh-cccccccHHHHHHHHhhcC
Confidence            5578877774  477788888887 6799999999876655443          244433 3222211  1111112244


Q ss_pred             cccEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          142 QLTKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       142 s~d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      -+|.|+=.-               -...++...+.|++||++++.
T Consensus        98 Gvd~v~D~v---------------G~~~~~~~~~~l~~~G~~v~~  127 (182)
T d1v3va2          98 GYDCYFDNV---------------GGEFLNTVLSQMKDFGKIAIC  127 (182)
T ss_dssp             CEEEEEESS---------------CHHHHHHHGGGEEEEEEEEEC
T ss_pred             CCceeEEec---------------CchhhhhhhhhccCCCeEEee
Confidence            577776332               235889999999999999885

>d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Putative oxidoreductase VCA1048
species: Vibrio cholerae [TaxId: 666]

Probab=85.93  E-value=1.9  Score=31.16  Aligned_cols=107  Identities=13%  Similarity=0.111  Sum_probs=62.0

Q ss_pred             eEEEEcCcc-cH-HHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGCGF-GG-LLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGcG~-G~-~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .|.=||||. |. ..+......++..++.+|.+++..+...+..         +.+.   ...|..+.    +. ..+|.
T Consensus         3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~---------~~~~---~~~~~~~l----l~-~~iD~   65 (167)
T d1xeaa1           3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRY---------RVSA---TCTDYRDV----LQ-YGVDA   65 (167)
T ss_dssp             EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHT---------TCCC---CCSSTTGG----GG-GCCSE
T ss_pred             EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhc---------cccc---ccccHHHh----cc-cccce
Confidence            466789985 42 2344555678888889999987654443321         2221   23454432    32 36899


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE---eCchHHHHHHHHHHhcCCC
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI---TDVEELGDWMRSCLENHPM  205 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~---td~~~~~~~~~~~~~~~~~  205 (252)
                      |++.-|...              -.+.+...|+-|=.+++.   +.+.+-...+.+....++.
T Consensus        66 V~I~tp~~~--------------H~~~~~~al~~gk~V~~EKP~~~~~~e~~~l~~~a~~~~~  114 (167)
T d1xeaa1          66 VMIHAATDV--------------HSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKHHQ  114 (167)
T ss_dssp             EEECSCGGG--------------HHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHTTC
T ss_pred             ecccccccc--------------cccccccccccccccccCCCCcCCHHHHHHHHHHHHHcCC
Confidence            988655432              344555666766555542   3345556667777766654

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=85.85  E-value=0.76  Score=33.63  Aligned_cols=43  Identities=19%  Similarity=0.057  Sum_probs=32.8

Q ss_pred             CCceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025470           65 KKIQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        65 ~~~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~  107 (252)
                      +...||=+|||. |.++..++...-...++++|.+++.++.|.+
T Consensus        28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            356899899998 5555566666667789999999988776653

>d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: LDH N-terminal domain-like
domain: Malate dehydrogenase
species: Chloroflexus aurantiacus [TaxId: 1108]

Probab=84.43  E-value=4.7  Score=28.46  Aligned_cols=123  Identities=13%  Similarity=0.153  Sum_probs=60.8

Q ss_pred             eEEEEcCcc-cHHHH-HHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEE-eCCcccccCccCCCCccc
Q 025470           68 QFADIGCGF-GGLLI-SLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVV-RTNSMKYIPNYFEKGQLT  144 (252)
Q Consensus        68 ~vLDIGcG~-G~~~~-~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~-~~da~~~l~~~~~~~s~d  144 (252)
                      .|-=||+|. |..+. .++.. +-..++.+|+.++..+...   ..+.........+..+. ..|..+ +.      ..|
T Consensus         3 KI~IIGaG~VG~~~A~~l~~~-~l~dl~l~D~~~~~~~~~~---~Dl~~~~~~~~~~~~i~~~~d~~~-~~------~ad   71 (142)
T d1uxja1           3 KISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIVEGVPQGKA---LDLYEASPIEGFDVRVTGTNNYAD-TA------NSD   71 (142)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-TCSEEEEECSSSSHHHHHH---HHHHTTHHHHTCCCCEEEESCGGG-GT------TCS
T ss_pred             eEEEECCCHHHHHHHHHHHhC-CcceEEEEeeccccchhHH---HHhhccccccCCCCEEEecCcHHH-hc------CCC
Confidence            355679876 32222 33333 3457899999887543221   12111000001123333 234332 21      246


Q ss_pred             EEEEeCCCCcccccccccc--ccCHHHHHHHHHhhc---CCcEEEEEeCchHHHHHHHHHHhc
Q 025470          145 KMFFLFPDPHFKEKNHRRR--VISPHLLDEYAYVLG---VGGIIYTITDVEELGDWMRSCLEN  202 (252)
Q Consensus       145 ~i~~~fpdP~~k~~h~krr--~~~~~~l~~~~~~Lk---pgG~l~~~td~~~~~~~~~~~~~~  202 (252)
                      .|++....|- +.......  ..+...++++...++   |.|.+.+.|+.-+...++...+..
T Consensus        72 vvvitag~~~-~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvtNPvDv~t~~~~~~sg  133 (142)
T d1uxja1          72 VIVVTSGAPR-KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPLDAMTYLAAEVSG  133 (142)
T ss_dssp             EEEECCSCC----------CHHHHHHHHHHHHHHHGGGCTTCEEEECSSSHHHHHHHHHHHHC
T ss_pred             EEEEeeeccC-CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeCCchHHHHHHHHHHHC
Confidence            6776554332 11111111  123445666665554   799999999988888888776644

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=83.01  E-value=0.94  Score=33.39  Aligned_cols=92  Identities=15%  Similarity=0.161  Sum_probs=57.3

Q ss_pred             eEEEEcC--cccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccE
Q 025470           68 QFADIGC--GFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTK  145 (252)
Q Consensus        68 ~vLDIGc--G~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~  145 (252)
                      .||=-|.  |.|.+++.||+.. ++.++++--+++-.+.+.+    +      +.+.+. ...|...........+.+|.
T Consensus        26 ~VLV~gaaGgVG~~avQlAk~~-Ga~Viat~~s~~k~~~~~~----l------Gad~vi-~~~~~~~~~~~~~~~~gvd~   93 (167)
T d1tt7a2          26 SVLVTGATGGVGGIAVSMLNKR-GYDVVASTGNREAADYLKQ----L------GASEVI-SREDVYDGTLKALSKQQWQG   93 (167)
T ss_dssp             CEEEESTTSHHHHHHHHHHHHH-TCCEEEEESSSSTHHHHHH----H------TCSEEE-EHHHHCSSCCCSSCCCCEEE
T ss_pred             EEEEeCCcchHHHHHHHHHHHc-CCceEEEecCHHHHHHHHh----h------cccceE-eccchhchhhhcccCCCceE
Confidence            4555563  5588999999996 5789999998876655543    2      444332 12221111111123456777


Q ss_pred             EEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          146 MFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       146 i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |+-..               ....+....+.|+++|++++.
T Consensus        94 vid~v---------------gg~~~~~~~~~l~~~G~iv~~  119 (167)
T d1tt7a2          94 AVDPV---------------GGKQLASLLSKIQYGGSVAVS  119 (167)
T ss_dssp             EEESC---------------CTHHHHHHHTTEEEEEEEEEC
T ss_pred             EEecC---------------cHHHHHHHHHHhccCceEEEe
Confidence            76432               235889999999999999874

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.54  E-value=4  Score=29.14  Aligned_cols=90  Identities=18%  Similarity=0.214  Sum_probs=51.5

Q ss_pred             EEEEcCcc--cHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEeCCcccccCccCCCCcccEE
Q 025470           69 FADIGCGF--GGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVRTNSMKYIPNYFEKGQLTKM  146 (252)
Q Consensus        69 vLDIGcG~--G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~~da~~~l~~~~~~~s~d~i  146 (252)
                      |.=||+|.  +.++..|++.  +..++|.|.+++.++.|.+.          +.-+  ....+. +.+      ...|.|
T Consensus         3 I~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~~----------~~~~--~~~~~~-~~~------~~~DiI   61 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVER----------QLVD--EAGQDL-SLL------QTAKII   61 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHHT----------TSCS--EEESCG-GGG------TTCSEE
T ss_pred             EEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHHh----------hccc--eeeeec-ccc------cccccc
Confidence            45578874  2333344443  67899999999877655431          2211  111121 112      256888


Q ss_pred             EEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEEeCch
Q 025470          147 FFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTITDVE  190 (252)
Q Consensus       147 ~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~td~~  190 (252)
                      ++.-|...           ....++++...|+++-.+.-.+-..
T Consensus        62 ilavp~~~-----------~~~vl~~l~~~l~~~~iv~~~~s~~   94 (165)
T d2f1ka2          62 FLCTPIQL-----------ILPTLEKLIPHLSPTAIVTDVASVK   94 (165)
T ss_dssp             EECSCHHH-----------HHHHHHHHGGGSCTTCEEEECCSCC
T ss_pred             cccCcHhh-----------hhhhhhhhhhhcccccceeeccccc
Confidence            87665322           2258888888888888776554333

>d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Nicotinamide nucleotide transhydrogenase dI component
species: Rhodospirillum rubrum [TaxId: 1085]

Probab=81.17  E-value=0.98  Score=34.04  Aligned_cols=40  Identities=18%  Similarity=0.298  Sum_probs=32.9

Q ss_pred             ceEEEEcCcc-cHHHHHHHHHCCCCeEEEEecCHhHHHHHHH
Q 025470           67 IQFADIGCGF-GGLLISLSTLFPEVLMIGMELRDKVTEYVKE  107 (252)
Q Consensus        67 ~~vLDIGcG~-G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~  107 (252)
                      ..||=||+|. |..++..|... ++++..+|+++..++..++
T Consensus        30 a~VvViGaGvaG~~Aa~~A~~l-GA~V~v~D~~~~~~~~l~~   70 (183)
T d1l7da1          30 ARVLVFGVGVAGLQAIATAKRL-GAVVMATDVRAATKEQVES   70 (183)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCEEEEECSCSTTHHHHHH
T ss_pred             cEEEEEcCcHHHHHHHHHHHHc-CCEEEEEeccHHHHHHHHH
Confidence            4899999997 77778888876 6799999999987766554

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.90  E-value=2.8  Score=30.92  Aligned_cols=95  Identities=9%  Similarity=0.061  Sum_probs=56.9

Q ss_pred             ceEEEEc--CcccHHHHHHHHHCCCCeEEEEecCHhHHHHHHHHHHHHhhcCCCCcccEEEEe-CCcccccCccCCCCcc
Q 025470           67 IQFADIG--CGFGGLLISLSTLFPEVLMIGMELRDKVTEYVKERILALRVSNPGQYQNISVVR-TNSMKYIPNYFEKGQL  143 (252)
Q Consensus        67 ~~vLDIG--cG~G~~~~~lA~~~p~~~~iGiDis~~~i~~a~~~~~~~~~~~~~~~~nv~~~~-~da~~~l~~~~~~~s~  143 (252)
                      ..||=.|  -|.|.+++.+|+......++++..+++.......   .      .+.+.+.-.. .|..+.+...- +.-+
T Consensus        32 etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~---~------~gad~vi~~~~~~~~~~~~~~~-~~Gv  101 (187)
T d1vj1a2          32 QTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTS---E------LGFDAAVNYKTGNVAEQLREAC-PGGV  101 (187)
T ss_dssp             CEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHH---H------SCCSEEEETTSSCHHHHHHHHC-TTCE
T ss_pred             CEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhh---c------ccceEEeeccchhHHHHHHHHh-ccCc
Confidence            4677766  4569999999999865678888887764433221   1      1333221111 12222222222 3447


Q ss_pred             cEEEEeCCCCccccccccccccCHHHHHHHHHhhcCCcEEEEE
Q 025470          144 TKMFFLFPDPHFKEKNHRRRVISPHLLDEYAYVLGVGGIIYTI  186 (252)
Q Consensus       144 d~i~~~fpdP~~k~~h~krr~~~~~~l~~~~~~LkpgG~l~~~  186 (252)
                      |.|+-..               -...++...+.|+++|+++..
T Consensus       102 Dvv~D~v---------------Gg~~~~~~~~~l~~~G~iv~~  129 (187)
T d1vj1a2         102 DVYFDNV---------------GGDISNTVISQMNENSHIILC  129 (187)
T ss_dssp             EEEEESS---------------CHHHHHHHHTTEEEEEEEEEC
T ss_pred             eEEEecC---------------CchhHHHHhhhccccccEEEe
Confidence            7776322               225788999999999999864