Citrus Sinensis ID: 025478

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
cccHHcccccccccccccccHHHHccccEEEccccccEEEEEcccccHHHHHHHHHHHHHHccccccEEEEcccEEEcccEEEcccEEEEEEcccccEEEcccccccccccccccHHHHHHHHHHHHcccccccEEEEEEEccccccccccccccccccccccEEEEEccccEEEEEEEccccccccccccccHHHHHHHcccccccEEEEcccccEEEEcccccccEEEcccccccccccEEEEEEEcccc
cccHHHccccccccccccccccccccccEEEEcccccEEEEccccccHHHHHHHHHHHHHHccccccEEEEEccccccccEEccccEEEEEcccccccEEEcccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEccccEEEEEEccccccccccEEccEEEEEEEEEEccccEEEEEcccccEEEEccccHHcHHHccccccccccccEEEEEHHHcc
MSLRFRAKekeakanpddddeknqkKQRMVVDlgngseviyfpriikmEDSWKFFDYlnnripwnrptirVFGRSCLQVacistprdtcyvaseGVTQLIYsgyrphpyswddfpplkdILDIVLKvlpgsrfnSLLLNRYkggndyvgwhaddeklygstpeiasvsfgcerdfllkikpsksyqdrrtddepvskrlkkkgnldqhsftlkhgsmlvmrgytqrdwihsvprrakaestrINLTFRHVLQ
mslrfrakekeakanpddddeknqkkqrmvvdlgngseviyfprIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLlkikpsksyqdrrtddepvskrlkkkgnldqhsftlkhgsmlvMRGYTQRDwihsvprrakaestrinltfrhvlq
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
*****************************VVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKI******************************FTLKHGSMLVMRGYTQRDWIHSVP**********NL*******
**********************************NGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPS*************************HSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
*************************KQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK**************RLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
**************************QRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVLQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q6P6J4239 Alpha-ketoglutarate-depen yes no 0.599 0.631 0.372 7e-20
Q58DM4278 Alpha-ketoglutarate-depen yes no 0.896 0.812 0.301 2e-19
Q6NS38261 Alpha-ketoglutarate-depen yes no 0.630 0.609 0.360 3e-18
Q32L00286 Alpha-ketoglutarate-depen no no 0.746 0.657 0.319 5e-18
Q5XIC8295 Alpha-ketoglutarate-depen no no 0.428 0.366 0.421 6e-18
Q96Q83286 Alpha-ketoglutarate-depen no no 0.738 0.650 0.307 7e-18
Q8K1E6286 Alpha-ketoglutarate-depen no no 0.416 0.367 0.423 1e-17
Q91QZ3 1962 RNA replication protein O N/A no 0.432 0.055 0.301 0.0007
>sp|Q6P6J4|ALKB2_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Mus musculus GN=Alkbh2 PE=1 SV=1 Back     alignment and function desciption
 Score = 97.4 bits (241), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 63/169 (37%), Positives = 86/169 (50%), Gaps = 18/169 (10%)

Query: 83  STPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYK 142
           S PR        G+T   +SG    P  W   P L+ + D V +V  G  FN +L+NRYK
Sbjct: 85  SVPRKQATYGDAGLT-YTFSGLTLTPKPW--VPVLERVRDRVCEVT-GQTFNFVLVNRYK 140

Query: 143 GGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKK 202
            G D++G H DDE+       IASVSFG  RDF+ + K S+  + RRT            
Sbjct: 141 DGCDHIGEHRDDERELAPGSPIASVSFGACRDFIFRHKDSRGKRPRRT------------ 188

Query: 203 GNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 251
             ++     L HGS+L+M   T   W HS+P R +  + R+NLTFR +L
Sbjct: 189 --VEVVRLQLAHGSLLMMNPPTNTHWYHSLPIRKRVLAPRVNLTFRKIL 235
Dioxygenase that repairs alkylated DNA and RNA containing 1-methyladenine and 3-methylcytosine by oxidative demethylation. Can also repair alkylated DNA containing 1-ethenoadenine. Has strong preference for double-stranded DNA. Has low efficiency with single-stranded substrates. Requires molecular oxygen, alpha-ketoglutarate and iron.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: -
>sp|Q58DM4|ALKB2_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Bos taurus GN=ALKBH2 PE=2 SV=1 Back     alignment and function description
>sp|Q6NS38|ALKB2_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2 OS=Homo sapiens GN=ALKBH2 PE=1 SV=1 Back     alignment and function description
>sp|Q32L00|ALKB3_BOVIN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Bos taurus GN=ALKBH3 PE=2 SV=1 Back     alignment and function description
>sp|Q5XIC8|ALKB3_RAT Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Rattus norvegicus GN=Alkbh3 PE=2 SV=1 Back     alignment and function description
>sp|Q96Q83|ALKB3_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Homo sapiens GN=ALKBH3 PE=1 SV=1 Back     alignment and function description
>sp|Q8K1E6|ALKB3_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 OS=Mus musculus GN=Alkbh3 PE=1 SV=1 Back     alignment and function description
>sp|Q91QZ3|RDRP_CLBVS RNA replication protein OS=Citrus leaf blotch virus (isolate Nagami kumquat/France/SRA-153/1984) GN=ORF1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
147777784244 hypothetical protein VITISV_030147 [Viti 0.968 1.0 0.677 2e-98
224089559240 predicted protein [Populus trichocarpa] 0.912 0.958 0.713 2e-97
357448069248 Alpha-ketoglutarate-dependent dioxygenas 0.900 0.915 0.679 8e-91
87162794256 2OG-Fe(II) oxygenase [Medicago truncatul 0.908 0.894 0.662 5e-90
18399917314 oxidoreductase, 2OG-Fe(II) oxygenase-lik 0.865 0.694 0.706 1e-89
297821443307 oxidoreductase [Arabidopsis lyrata subsp 0.865 0.710 0.693 5e-89
449434054244 PREDICTED: alpha-ketoglutarate-dependent 0.948 0.979 0.641 9e-88
356532818236 PREDICTED: alpha-ketoglutarate-dependent 0.892 0.953 0.675 1e-87
242095540265 hypothetical protein SORBIDRAFT_10g01072 0.853 0.811 0.662 5e-80
86361423253 oxidoreductase-like protein [Oryza sativ 0.964 0.960 0.593 1e-79
>gi|147777784|emb|CAN75733.1| hypothetical protein VITISV_030147 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 170/251 (67%), Positives = 204/251 (81%), Gaps = 7/251 (2%)

Query: 1   MSLRFRAKEKEAKANPDDDDEKNQKKQRMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNN 60
           M+ +F+A E ++     + +  N+  +R  +DLGNGS++IY PR +  E+SWK+FDYLN 
Sbjct: 1   MNFKFKA-ESKSTNPNPNPNPSNEGGKRQSIDLGNGSDLIYIPRFLAFEESWKWFDYLNK 59

Query: 61  RIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDI 120
            IPW RPTIRVFGRSC+Q      PRDTCYVAS G+ +L YSGY+PH Y+WDD+PPLKDI
Sbjct: 60  EIPWTRPTIRVFGRSCVQ------PRDTCYVASVGLPELSYSGYQPHAYTWDDYPPLKDI 113

Query: 121 LDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIK 180
           L  V K LPGS FNSLLLNRYKGGNDYVGWH+DDEKLYGSTPEIAS+SFGCER+F LK K
Sbjct: 114 LVXVHKALPGSSFNSLLLNRYKGGNDYVGWHSDDEKLYGSTPEIASISFGCEREFFLKKK 173

Query: 181 PSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAES 240
           PSK  QD R++ EPV+KR KK  ++D HSFTLKHGSMLVMRGYTQRDW+HSVP+RAKA++
Sbjct: 174 PSKVSQDSRSNGEPVNKRAKKSSSVDHHSFTLKHGSMLVMRGYTQRDWVHSVPKRAKADA 233

Query: 241 TRINLTFRHVL 251
           TRINLTFRHV+
Sbjct: 234 TRINLTFRHVI 244

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224089559|ref|XP_002308756.1| predicted protein [Populus trichocarpa] gi|222854732|gb|EEE92279.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357448069|ref|XP_003594310.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|355483358|gb|AES64561.1| Alpha-ketoglutarate-dependent dioxygenase alkB-like protein [Medicago truncatula] gi|388502228|gb|AFK39180.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|87162794|gb|ABD28589.1| 2OG-Fe(II) oxygenase [Medicago truncatula] Back     alignment and taxonomy information
>gi|18399917|ref|NP_565530.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana] gi|20198150|gb|AAD23616.2| expressed protein [Arabidopsis thaliana] gi|330252192|gb|AEC07286.1| oxidoreductase, 2OG-Fe(II) oxygenase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297821443|ref|XP_002878604.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] gi|297324443|gb|EFH54863.1| oxidoreductase [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449434054|ref|XP_004134811.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus] gi|449520163|ref|XP_004167103.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356532818|ref|XP_003534967.1| PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 3-like [Glycine max] Back     alignment and taxonomy information
>gi|242095540|ref|XP_002438260.1| hypothetical protein SORBIDRAFT_10g010720 [Sorghum bicolor] gi|241916483|gb|EER89627.1| hypothetical protein SORBIDRAFT_10g010720 [Sorghum bicolor] Back     alignment and taxonomy information
>gi|86361423|gb|ABC94593.1| oxidoreductase-like protein [Oryza sativa Indica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:2060430314 ALKBH2 "homolog of E. coli alk 0.865 0.694 0.706 1e-84
UNIPROTKB|Q9KKY9202 VC_A0961 "Putative uncharacter 0.5 0.623 0.340 3e-24
TIGR_CMR|VC_A0961202 VC_A0961 "hypothetical protein 0.5 0.623 0.340 3e-24
UNIPROTKB|E2R042259 ALKBH2 "Uncharacterized protei 0.599 0.583 0.396 1.1e-22
ASPGD|ASPL0000069236335 AN7782 [Emericella nidulans (t 0.408 0.307 0.438 1.1e-22
UNIPROTKB|E1C3L3286 ALKBH3 "Uncharacterized protei 0.738 0.650 0.341 8e-21
MGI|MGI:2141032239 Alkbh2 "alkB, alkylation repai 0.599 0.631 0.396 1.7e-20
UNIPROTKB|F1N437278 ALKBH2 "Alpha-ketoglutarate-de 0.599 0.543 0.378 5.7e-20
UNIPROTKB|Q58DM4278 ALKBH2 "Alpha-ketoglutarate-de 0.599 0.543 0.378 7.2e-20
UNIPROTKB|I3LAK2259 ALKBH2 "Uncharacterized protei 0.599 0.583 0.384 7.2e-20
TAIR|locus:2060430 ALKBH2 "homolog of E. coli alkB" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 848 (303.6 bits), Expect = 1.0e-84, P = 1.0e-84
 Identities = 159/225 (70%), Positives = 178/225 (79%)

Query:    28 RMVVDLGNGSEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRD 87
             R  +DLG+GS++IY  R +  + SW FFDYL+  IPW RPTIRVFGRSCLQ      PRD
Sbjct:    96 RKTIDLGHGSDLIYIQRFLPFQQSWTFFDYLDKHIPWTRPTIRVFGRSCLQ------PRD 149

Query:    88 TCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDY 147
             TCYVAS G+T L+YSGYRP  YSWDDFPPLK+ILD + KVLPGSRFNSLLLNRYKG +DY
Sbjct:   150 TCYVASSGLTALVYSGYRPTSYSWDDFPPLKEILDAIYKVLPGSRFNSLLLNRYKGASDY 209

Query:   148 VGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSK-SYQDRRTDDEPVSKRLKKKGNLD 206
             V WHADDEK+YG TPEIASVSFGCERDF+LK K  + S Q +  D  P  KRLK+    D
Sbjct:   210 VAWHADDEKIYGPTPEIASVSFGCERDFVLKKKKDEESSQGKTGDSGPAKKRLKRSSRED 269

Query:   207 QHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 251
             Q S TLKHGS+LVMRGYTQRDWIHSVP+RAKAE TRINLTFR VL
Sbjct:   270 QQSLTLKHGSLLVMRGYTQRDWIHSVPKRAKAEGTRINLTFRLVL 314
GO:0005634 "nucleus" evidence=ISM
GO:0008152 "metabolic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=ISS
GO:0006281 "DNA repair" evidence=IDA
GO:0035514 "DNA demethylase activity" evidence=IDA
UNIPROTKB|Q9KKY9 VC_A0961 "Putative uncharacterized protein" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A0961 VC_A0961 "hypothetical protein" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|E2R042 ALKBH2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ASPGD|ASPL0000069236 AN7782 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|E1C3L3 ALKBH3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
MGI|MGI:2141032 Alkbh2 "alkB, alkylation repair homolog 2 (E. coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1N437 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q58DM4 ALKBH2 "Alpha-ketoglutarate-dependent dioxygenase alkB homolog 2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|I3LAK2 ALKBH2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q58DM4ALKB2_BOVIN1, ., 1, 4, ., 1, 1, ., -0.30110.89680.8129yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.14.110.691

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
pfam13532190 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase su 3e-32
COG3145194 COG3145, AlkB, Alkylated DNA repair protein [DNA r 1e-15
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information 
 Score =  116 bits (292), Expect = 3e-32
 Identities = 50/224 (22%), Positives = 75/224 (33%), Gaps = 49/224 (21%)

Query: 39  VIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGR------SCLQVACISTPRDTCYVA 92
           ++  P  +  E+       L    PW +P             +C  +  ++      Y  
Sbjct: 2   LVLLPGFLSAEEQAALLRELLAEAPWRQPMTPGGKPMSVRMTNCGPLGWVTDGP--GY-- 57

Query: 93  SEGVTQLIYSGYRPHPYSWDDFPP-LKDILDIVLK--VLPGSRFNSLLLNRYKGGNDYVG 149
                   YSG       W  FP  L  + + +      PG   N+ L+N Y+ G   +G
Sbjct: 58  -------RYSGTPVTGEPWPPFPAVLLQLAERLAAAAGPPGFEPNACLVNFYRPG-ARMG 109

Query: 150 WHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHS 209
            H D ++       I SVS G    F            +  DD                +
Sbjct: 110 LHQDKDE-LDFGAPIVSVSLGDPALFRFG--------GKTRDDPT-------------IA 147

Query: 210 FTLKHGSMLVMRGYTQRDWIHSVPRRAKA-----ESTRINLTFR 248
             L+ G +LVM G ++  + H VPR            RINLTFR
Sbjct: 148 LPLESGDVLVMGGPSRLAY-HGVPRIKPGTHPLLGGGRINLTFR 190

Length = 190
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 100.0
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 100.0
TIGR00568169 alkb DNA alkylation damage repair protein AlkB. Pr 99.97
COG3145194 AlkB Alkylated DNA repair protein [DNA replication 99.96
KOG3200224 consensus Uncharacterized conserved protein [Funct 99.91
KOG4176323 consensus Uncharacterized conserved protein [Funct 99.57
PF12933253 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 99.4
KOG3959306 consensus 2-Oxoglutarate- and iron-dependent dioxy 99.33
KOG2731378 consensus DNA alkylation damage repair protein [RN 97.88
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 97.82
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 97.81
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 96.96
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.35
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 91.73
PLN00052310 prolyl 4-hydroxylase; Provisional 88.76
PF13759101 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB 86.89
COG3128229 PiuC Uncharacterized iron-regulated protein [Funct 85.04
PF08007 319 Cupin_4: Cupin superfamily protein; InterPro: IPR0 82.08
PF09859173 Oxygenase-NA: Oxygenase, catalysing oxidative meth 80.61
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-37  Score=263.89  Aligned_cols=182  Identities=22%  Similarity=0.344  Sum_probs=144.7

Q ss_pred             EeCCCCceEEEeCCCCCHHHHHHHHHHHHh---cCCCCCCeeeecCceEeeeeeecCCcee-----eeeCCCCccceeec
Q 025478           31 VDLGNGSEVIYFPRIIKMEDSWKFFDYLNN---RIPWNRPTIRVFGRSCLQVACISTPRDT-----CYVASEGVTQLIYS  102 (252)
Q Consensus        31 ~~l~~g~~~~~~p~fl~~~e~~~L~~~L~~---~~~w~~~~~~~~G~~~~~~~~~~~pR~~-----~~y~~~~~~~y~y~  102 (252)
                      ..|.+|  +.++|+|. .+++++|++.|++   +.+|++  ..++|+...+      +|++     +||++..  .|+|+
T Consensus        14 ~~~~~g--~~~~~~~~-~~~~~~l~~~~~~~~~~~p~~~--~~~~gg~~ms------v~mt~~G~~~W~~d~~--~YrYs   80 (213)
T PRK15401         14 EPLAPG--AVLLRGFA-LAAAEALLAAIEAVAAQAPFRH--MVTPGGYTMS------VAMTNCGALGWVTDRR--GYRYS   80 (213)
T ss_pred             eecCCC--cEEeCCCC-HHHHHHHHHHHHHHHhcCCccc--eecCCCCcce------eEEeccccceEecCCC--CcccC
Confidence            346554  88999995 8889999999987   899988  5667765544      8888     8999874  59999


Q ss_pred             CCC-CCCCCCCCCch-HHHHHHHHHHh--cCCCCcceeeeeeecCCCCCcccCCCC-CCCcCCCCcEEEEecCCeeeEEE
Q 025478          103 GYR-PHPYSWDDFPP-LKDILDIVLKV--LPGSRFNSLLLNRYKGGNDYVGWHADD-EKLYGSTPEIASVSFGCERDFLL  177 (252)
Q Consensus       103 g~~-~~~~~w~~~P~-L~~il~~~~e~--~~g~~~n~~LiN~Y~~G~d~i~~H~D~-~~~~g~~~~IasvSLG~~r~f~f  177 (252)
                      +.. ....+|+++|. |.++.+++...  ..+..||+||||+|++|+ +|+||+|+ |..+  +++|+|||||++|+|.|
T Consensus        81 ~~~~~~~~pwp~~P~~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~-~mg~H~D~~E~~~--~~pI~SvSLG~~~~F~~  157 (213)
T PRK15401         81 PIDPLTGKPWPAMPASFLALAQRAAAAAGFPGFQPDACLINRYAPGA-KLSLHQDKDERDF--RAPIVSVSLGLPAVFQF  157 (213)
T ss_pred             CcCCCCCCCCCCchHHHHHHHHHHHHHcCCCCCCCCEEEEEeccCcC-ccccccCCCcccC--CCCEEEEeCCCCeEEEe
Confidence            875 46789998886 66666655322  123489999999999998 99999996 4443  56899999999999999


Q ss_pred             eeCCCCCccCCCCCCchhhhhhhccCCCcceEEEcCCCcEEEEccCcccceeccccccCCCC-----CceEEEEeecc
Q 025478          178 KIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAE-----STRINLTFRHV  250 (252)
Q Consensus       178 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~-----~~RISLTFR~v  250 (252)
                      ++...++                     .+.+|.|++|||+||.|++|. |.|+|++.+...     .+|||||||++
T Consensus       158 ~~~~~~~---------------------~~~~l~L~~Gdllvm~G~sr~-~~HgVp~~~~~~~p~~g~~RINLTFR~~  213 (213)
T PRK15401        158 GGLKRSD---------------------PLQRILLEHGDVVVWGGPSRL-RYHGILPLKAGEHPLTGECRINLTFRKA  213 (213)
T ss_pred             cccCCCC---------------------ceEEEEeCCCCEEEECchHhh-eeccCCcCCCCcCCCCCCCeEEEEeEcC
Confidence            8754321                     347899999999999999986 569999876533     38999999985

>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>TIGR00568 alkb DNA alkylation damage repair protein AlkB Back     alignment and domain information
>COG3145 AlkB Alkylated DNA repair protein [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3200 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4176 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF12933 FTO_NTD: FTO catalytic domain; InterPro: IPR024367 Alpha-ketoglutarate-dependent dioxygenase FTO, also known as Fat mass and obesity-associated protein, is a nucleus protein which belongs to the FTO family Back     alignment and domain information
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only] Back     alignment and domain information
>KOG2731 consensus DNA alkylation damage repair protein [RNA processing and modification] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PLN00052 prolyl 4-hydroxylase; Provisional Back     alignment and domain information
>PF13759 2OG-FeII_Oxy_5: Putative 2OG-Fe(II) oxygenase; PDB: 3BVC_B 2RG4_A Back     alignment and domain information
>COG3128 PiuC Uncharacterized iron-regulated protein [Function unknown] Back     alignment and domain information
>PF08007 Cupin_4: Cupin superfamily protein; InterPro: IPR022777 This signature represents primarily the cupin fold found in JmjC transcription factors Back     alignment and domain information
>PF09859 Oxygenase-NA: Oxygenase, catalysing oxidative methylation of damaged DNA; InterPro: IPR018655 This family of various hypothetical prokaryotic proteins, has no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3rzl_A208 Duplex Interrogation By A Direct Dna Repair Protein 5e-19
3rzm_A206 Duplex Interrogation By A Direct Dna Repair Protein 5e-19
3rzh_A209 Duplex Interrogation By A Direct Dna Repair Protein 6e-19
3h8o_A209 Structure Determination Of Dna Methylation Lesions 6e-19
3s57_A204 Abh2 Cross-Linked With Undamaged Dsdna-1 Containing 6e-19
3bty_A203 Crystal Structure Of Human Abh2 Bound To Dsdna Cont 6e-19
3btx_A204 X-Ray Structure Of Human Abh2 Bound To Dsdna Throug 6e-19
3btz_A202 Crystal Structure Of Human Abh2 Cross-Linked To Dsd 7e-19
3bu0_A203 Crystal Structure Of Human Abh2 Cross-Linked To Dsd 7e-19
3rzg_A209 Duplex Interrogation By A Direct Dna Repair Protein 8e-19
2iuw_A238 Crystal Structure Of Human Abh3 In Complex With Iro 5e-18
>pdb|3RZL|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 208 Back     alignment and structure 
Iteration: 1

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 65/183 (35%), Positives = 87/183 (47%), Gaps = 24/183 (13%)
Query: 69  IRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVL 128
           ++VFG+        S PR        G+T   +SG    P  W   P L+ I D V  V 
Sbjct: 46  VQVFGK------WHSVPRKQATYGDAGLT-YTFSGLTLSPKPW--IPVLERIRDHVSGVT 96
Query: 129 PGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDR 188
            G  FN +L+NRYK G+D++  H DDE+       IASVSFG  RDF+ + K S+     
Sbjct: 97  -GQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSPS 155
Query: 189 RTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFR 248
           R               +      L HGS+L+M   T   W HS+P R K  + R+NLTFR
Sbjct: 156 R--------------RVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFR 201
Query: 249 HVL 251
            +L
Sbjct: 202 KIL 204
>pdb|3RZM|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 206 Back     alignment and structure
>pdb|3RZH|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209 Back     alignment and structure
>pdb|3H8O|A Chain A, Structure Determination Of Dna Methylation Lesions N1-mea And N3-mec In Duplex Dna Using A Cross-linked Host-guest System Length = 209 Back     alignment and structure
>pdb|3S57|A Chain A, Abh2 Cross-Linked With Undamaged Dsdna-1 Containing Cofactors Length = 204 Back     alignment and structure
>pdb|3BTY|A Chain A, Crystal Structure Of Human Abh2 Bound To Dsdna Containing 1mea Through Cross-Linking Away From Active Site Length = 203 Back     alignment and structure
>pdb|3BTX|A Chain A, X-Ray Structure Of Human Abh2 Bound To Dsdna Through Active Site Cross-Linking Length = 204 Back     alignment and structure
>pdb|3BTZ|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna Length = 202 Back     alignment and structure
>pdb|3BU0|A Chain A, Crystal Structure Of Human Abh2 Cross-Linked To Dsdna With Cofactors Length = 203 Back     alignment and structure
>pdb|3RZG|A Chain A, Duplex Interrogation By A Direct Dna Repair Protein In The Search Of Damage Length = 209 Back     alignment and structure
>pdb|2IUW|A Chain A, Crystal Structure Of Human Abh3 In Complex With Iron Ion And 2-Oxoglutarate Length = 238 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 6e-44
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 1e-43
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 1e-21
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 1e-21
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 7e-06
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Length = 204 Back     alignment and structure
 Score =  146 bits (369), Expect = 6e-44
 Identities = 62/217 (28%), Positives = 94/217 (43%), Gaps = 27/217 (12%)

Query: 38  EVIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQVACISTPRDTCYVASE 94
               +  +    ++ + F  L   + +       ++VFG+        S PR        
Sbjct: 11  LDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWH------SVPRKQATYGDA 64

Query: 95  GVTQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADD 154
           G+T   +SG    P  W    P+ + +   +  + G  FN +L+NRYK G+D++  H DD
Sbjct: 65  GLTY-TFSGLTLSPKPW---IPVLERIRDHVSGVTGQTFNFVLINRYKDGSDHICEHRDD 120

Query: 155 EKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKH 214
           E+       IASVSFG  RDF+ + K S+     R                      L H
Sbjct: 121 ERELAPGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA--------------VVRLPLAH 166

Query: 215 GSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 251
           GS+L+M   T   W HS+P R K  + R+NLTFR +L
Sbjct: 167 GSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL 203
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Length = 238 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Length = 211 Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Length = 345 Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Length = 495 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 100.0
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 100.0
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 100.0
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 100.0
3lfm_A 495 Protein FTO; FAT MASS and obesity associated (FTO) 99.81
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 96.98
2jig_A224 Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A { 96.65
3itq_A216 Prolyl 4-hydroxylase, alpha subunit domain protei; 96.22
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 95.31
3kt7_A 633 PKHD-type hydroxylase TPA1; double-stranded beta h 91.3
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 90.89
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
Probab=100.00  E-value=1.6e-47  Score=325.52  Aligned_cols=189  Identities=34%  Similarity=0.566  Sum_probs=165.1

Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCC---CCCeeeecCceEeeeeeecCCceeeeeCCCCccceeecCCCCCCCCCCCCc
Q 025478           39 VIYFPRIIKMEDSWKFFDYLNNRIPW---NRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRPHPYSWDDFP  115 (252)
Q Consensus        39 ~~~~p~fl~~~e~~~L~~~L~~~~~w---~~~~~~~~G~~~~~~~~~~~pR~~~~y~~~~~~~y~y~g~~~~~~~w~~~P  115 (252)
                      .+|+|+||++++|+.||++|.++++|   ++..++||||.+.+      ||+++||++.+.. |.|+|..+.+.+|+  |
T Consensus        12 ~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~gk~~~~------pR~~~wyg~~~~~-Y~Ysg~~~~~~pwp--~   82 (204)
T 3s57_A           12 DSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSV------PRKQATYGDAGLT-YTFSGLTLSPKPWI--P   82 (204)
T ss_dssp             EEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEETTEEEEC------SSEEEEEECTTCC-EEETTEEECCEECC--H
T ss_pred             eEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEECCeEecc------CcEEEEECCCCCC-cccCCCcccCCCCC--H
Confidence            56789999999999999999999999   77789999999987      9999999998874 99999988888996  5


Q ss_pred             hHHHHHHHHHHhcCCCCcceeeeeeecCCCCCcccCCCCCCCcCCCCcEEEEecCCeeeEEEeeCCCCCccCCCCCCchh
Q 025478          116 PLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPV  195 (252)
Q Consensus       116 ~L~~il~~~~e~~~g~~~n~~LiN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~~~~~~~~~~~  195 (252)
                      +|..+++.+ +..+|..||+||||+|++|+|+|+||+|++..++.+++|||||||++|.|.|+++..++...        
T Consensus        83 ~L~~l~~~~-~~~~g~~~n~~LvN~Y~~G~d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~~~~~--------  153 (204)
T 3s57_A           83 VLERIRDHV-SGVTGQTFNFVLINRYKDGSDHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRGKSP--------  153 (204)
T ss_dssp             HHHHHHHHH-HHHHCCCCSEEEEEEESSTTCCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGCSSSC--------
T ss_pred             HHHHHHHHH-HHHhCCCCceeEEEEECCCCCcccceecChhhccCCCcEEEEECCCceEEEEEEcCCCcccc--------
Confidence            788877666 34558999999999999999999999999998888899999999999999999865432100        


Q ss_pred             hhhhhccCCCcceEEEcCCCcEEEEccCcccceeccccccCCCCCceEEEEeeccc
Q 025478          196 SKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL  251 (252)
Q Consensus       196 ~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISLTFR~v~  251 (252)
                            .......++.|++|||+||+|++|..|+|+||+.+...++|||||||+++
T Consensus       154 ------~~~~~~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~~~~~~RislTFR~i~  203 (204)
T 3s57_A          154 ------SRRVAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKIL  203 (204)
T ss_dssp             ------SCCCCCEEEEECTTEEEEEETTHHHHEEEEECCCTTCCSCEEEEEEECBC
T ss_pred             ------ccCCceEEEECCCCCEEEECchhhheeEeeccccCCCCCCEEEEEeeeec
Confidence                  01124588999999999999999999999999988778999999999985
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A Back     alignment and structure
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 252
d2iuwa1210 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo s 3e-37
d2fdia1200 b.82.2.10 (A:15-214) Alkylated DNA repair protein 5e-17
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Length = 210 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (321), Expect = 3e-37
 Identities = 64/215 (29%), Positives = 91/215 (42%), Gaps = 24/215 (11%)

Query: 37  SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGV 96
           S V  +P  + ++++    + L   +PW + T      +  Q    +   +  Y      
Sbjct: 19  SRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYT----- 73

Query: 97  TQLIYSGYRPHPYSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEK 156
               YS     P     + P+   L   ++   G  FNSLL N Y+   D V WH+DDE 
Sbjct: 74  ----YSRITMEP--NPHWHPVLRTLKNRIEENTGHTFNSLLCNLYRNEKDSVDWHSDDEP 127

Query: 157 LYGSTPEIASVSFGCERDFLLKIKPSKSYQDRRTDDEPVSKRLKKKGNLDQHSFTLKHGS 216
             G  P IAS+SFG  R F ++ KP        T  E V                L HG+
Sbjct: 128 SLGRCPIIASLSFGATRTFEMRKKPPPEENGDYTYVERVK-------------IPLDHGT 174

Query: 217 MLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL 251
           +L+M G TQ DW H VP+   +   R+NLTFR V 
Sbjct: 175 LLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVY 209
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Length = 200 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 100.0
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 100.0
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: AlkB-like
domain: AlkB homolog 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.7e-43  Score=295.80  Aligned_cols=199  Identities=33%  Similarity=0.562  Sum_probs=163.2

Q ss_pred             ceEEeCCCC-ceEEEeCCCCCHHHHHHHHHHHHhcCCCCCCeeeecCceEeeeeeecCCceeeeeCCCCccceeecCCCC
Q 025478           28 RMVVDLGNG-SEVIYFPRIIKMEDSWKFFDYLNNRIPWNRPTIRVFGRSCLQVACISTPRDTCYVASEGVTQLIYSGYRP  106 (252)
Q Consensus        28 ~~~~~l~~g-~~~~~~p~fl~~~e~~~L~~~L~~~~~w~~~~~~~~G~~~~~~~~~~~pR~~~~y~~~~~~~y~y~g~~~  106 (252)
                      ++....|.| ++|.|+||||+++||+.||+.|.++++|.+..++++|+...+      ||+++|+++.   .|.|++...
T Consensus         9 ~~~~~~p~g~~~l~y~p~fLs~~e~~~Ll~~L~~e~~w~~~~~~~~g~~~~~------pR~~~~~~d~---~y~y~~~~~   79 (210)
T d2iuwa1           9 YEISLSPTGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQ------PRLTAWYGEL---PYTYSRITM   79 (210)
T ss_dssp             EEEECCSSSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEEC------SSEEEEEECC---CTTSCHHHH
T ss_pred             eEeccCCCCcceEEEECCcCCHHHHHHHHHHHHhhCCccccceeccCcccce------eeeeEEecCc---Ccccccccc
Confidence            445555555 579999999999999999999999999999999999999887      9999999864   377776644


Q ss_pred             CC-CCCCCCchHHHHHHHHHHhcCCCCcceeeeeeecCCCCCcccCCCCCCCcCCCCcEEEEecCCeeeEEEeeCCCCCc
Q 025478          107 HP-YSWDDFPPLKDILDIVLKVLPGSRFNSLLLNRYKGGNDYVGWHADDEKLYGSTPEIASVSFGCERDFLLKIKPSKSY  185 (252)
Q Consensus       107 ~~-~~w~~~P~L~~il~~~~e~~~g~~~n~~LiN~Y~~G~d~i~~H~D~~~~~g~~~~IasvSLG~~r~f~fr~~~~~~~  185 (252)
                      .+ .+|+  |.|..+.+.+.+ .++..+|.|+||+|.+|+++|+||+|++..++++++||+||||++|.|.|+++..+..
T Consensus        80 ~~~~~~~--~~l~~l~~~~~~-~~~~~~~~~~ln~Y~~~~~~I~~H~D~~~~~~~~~~I~slSlG~~~~~~~r~~~~~~~  156 (210)
T d2iuwa1          80 EPNPHWH--PVLRTLKNRIEE-NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEE  156 (210)
T ss_dssp             CCBSSCC--HHHHHHHHHHHH-HHSCCCCEEEEEEECSTTCCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC---
T ss_pred             ccCCCCc--HHHHHHHHhhhh-hcCccchhhhhhccccCCCccccCcCCchhcccCCceeEEeeCCceEEEEcccccccc
Confidence            32 3464  357777666543 3478999999999999988999999999999999999999999999999998655321


Q ss_pred             cCCCCCCchhhhhhhccCCCcceEEEcCCCcEEEEccCcccceeccccccCCCCCceEEEEeeccc
Q 025478          186 QDRRTDDEPVSKRLKKKGNLDQHSFTLKHGSMLVMRGYTQRDWIHSVPRRAKAESTRINLTFRHVL  251 (252)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~~gsllvM~g~~q~~w~H~Ip~~~~~~~~RISLTFR~v~  251 (252)
                      ..             .......++|.|++|||+||.|++|+.|+|+||+++...++|||||||++.
T Consensus       157 ~~-------------~~~~~~~~~i~L~~gsl~vm~g~~~~~~~H~Ip~~~~~~~~RiSlTfR~v~  209 (210)
T d2iuwa1         157 NG-------------DYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVY  209 (210)
T ss_dssp             ------------------CCCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCC
T ss_pred             CC-------------ccCCCceEEEEcCCCCEEEeCchhhCceEccCCccCCCCCCeEEEEEEeec
Confidence            10             011235688999999999999999999999999988888999999999975
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure