Citrus Sinensis ID: 025479

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPGIM
Secondary Structure (PSIPRED)
cHHHHcccccccccccccEEEEEEccccEEcccccEEcccHHHHHHHHcccccccccccEEEEEccccccccccHHHHHHHHHHHHHHHcccccEEEEcccccccccccccEEEEcccHHHHHHHHHccccccccccccccccEEEEEcccccccccccccccccccccEEEEEEcccEEEEEcccccccHHHHHHHHHHHcccccccccEEEcccccccEEEEEccccccccEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHccccccccccHHHHEccccccccccccccccHHHHHHHcccccccccccEEEEEccEccccccccHHHHHHHHHHHHHHHcccccEEEEccccccccccccEEEEEcccHHHHHHHHHHcccccccccccccccEEEEEEcccccccHHHcccccHccccEEEEEEEccEEEEEccccHcHHHHHHHHHHHHcHHHEccccccccccccccHEEEcccccccccccHcHEEEEEHcccccccc
Coil and Loop (DISEMBL)
mlsrklkqlcfpgrafsygLNWAlagrgvvvndkafqNLTTSELQQKGATIaeslsglpvyvrgnllggssdISKAQYAKLLKQVTAHLSSIANVFvqdgavgsssecdakvrvisdspsAVLKLSSIlwktpsravshdscpltvYVTTsispgvvnavglraqgdngfiaADIERSSLIlcgkgfsdaNGVKEALAALSGPVIIARGGLLLCARcrcncffswcgtiipdwrfwWPIYIQIAnccypgim
Flexible Loop (DISEMBL)
mlsrklkqLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKvrvisdspsaVLKLSSIlwktpsravshdsCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPGIM
Low Complexity Region (SEG)
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPGIM
Disordered region (IsUnstruct)
******KQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPG**
Disordered Region (DISOPRED)
*************RAFSYGLNWALAGRGVVVNDKAFQNLTTSEL***************VYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPGIM
Disordered Region (DISEMBL)
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPGIM
Disordered Region (DISPRO)
*LSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPGIM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLSRKLKQLCFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARCRCNCFFSWCGTIIPDWRFWWPIYIQIANCCYPGIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
359489873	439	PREDICTED: uncharacterized protein LOC10	0.817	0.469	0.754	2e-86
255558073	380	conserved hypothetical protein [Ricinus	0.805	0.534	0.704	4e-77
116311041	368	OSIGBa0142I02-OSIGBa0101B20.15 [Oryza sa	0.801	0.548	0.658	3e-69
58532129	485	OSJNBa0009P12.18 [Oryza sativa Japonica	0.801	0.416	0.658	4e-69
115460232	367	Os04g0592500 [Oryza sativa Japonica Grou	0.773	0.531	0.676	8e-69
222629458	435	hypothetical protein OsJ_15984 [Oryza sa	0.773	0.448	0.676	9e-69
218195467	435	hypothetical protein OsI_17201 [Oryza sa	0.773	0.448	0.671	3e-68
449460742	391	PREDICTED: uncharacterized protein LOC10	0.797	0.514	0.641	3e-68
326510085	432	predicted protein [Hordeum vulgare subsp	0.773	0.451	0.656	4e-68
357165607	431	PREDICTED: uncharacterized protein LOC10	0.773	0.452	0.635	3e-67

>gi|359489873|ref|XP_002270810.2| PREDICTED: uncharacterized protein LOC100244219 [Vitis vinifera] gi|297737287|emb|CBI26488.3| unnamed protein product [Vitis vinifera]

 Score =  324 bits (831), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 157/208 (75%), Positives = 185/208 (88%), Gaps = 2/208 (0%)

Query: 11  FP--GRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLG 68
           FP  G  FSYGLNWALAG+GV+VNDKAF+NL +SELQQKGATIAESLSGLP++VRG++LG
Sbjct: 46  FPREGPGFSYGLNWALAGKGVIVNDKAFRNLKSSELQQKGATIAESLSGLPIHVRGDVLG 105

Query: 69  GSSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSI 128
           G+S+I KAQ++KLLKQVTAHLSSI++++V DGA+GSSS+CDAKVRVISDSPSAVL LS++
Sbjct: 106 GASEIPKAQFSKLLKQVTAHLSSISDIYVHDGAIGSSSKCDAKVRVISDSPSAVLSLSNV 165

Query: 129 LWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFS 188
           LWKTP+RAVSHDSCPLTVY+ +S+SPG V A G+ +QG NG IAADIERSSLIL GK FS
Sbjct: 166 LWKTPTRAVSHDSCPLTVYIASSLSPGAVEAAGIGSQGKNGLIAADIERSSLILSGKAFS 225

Query: 189 DANGVKEALAALSGPVIIARGGLLLCAR 216
           D NG+K ALAAL GP+I ARGGL L AR
Sbjct: 226 DTNGIKTALAALCGPIISARGGLPLSAR 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255558073|ref|XP_002520065.1| conserved hypothetical protein [Ricinus communis] gi|223540829|gb|EEF42389.1| conserved hypothetical protein [Ricinus communis]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 143/203 (70%), Positives = 169/203 (83%)

Query: 13  GRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSD 72
           G  FSYGLNWALA +GV+V DKAF+NL +S+L QKGATI+ESLSGLPV++RGN+LGG+S+
Sbjct: 7   GSGFSYGLNWALAVKGVIVKDKAFKNLNSSQLHQKGATISESLSGLPVHIRGNVLGGTSE 66

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKT 132
           ISK Q+ KLLKQVT HLSS+++V+V DGA+GSSS+C  KVRVISDSPSA+L LS+ILW+ 
Sbjct: 67  ISKQQFGKLLKQVTTHLSSVSDVYVHDGAIGSSSKCGTKVRVISDSPSAILSLSNILWEV 126

Query: 133 PSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANG 192
           PSRA+SHDSCPLTVYV TS+S G V+AVGL AQ + G IAADIER SL+LCGK FSD N 
Sbjct: 127 PSRAISHDSCPLTVYVATSVSQGAVDAVGLGAQANKGVIAADIERFSLVLCGKAFSDINA 186

Query: 193 VKEALAALSGPVIIARGGLLLCA 215
            KEAL  LS PVI A G L L A
Sbjct: 187 TKEALTTLSEPVIFALGDLPLPA 209

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116311041|emb|CAH67972.1| OSIGBa0142I02-OSIGBa0101B20.15 [Oryza sativa Indica Group]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 164/202 (81%)

Query: 10  CFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGG 69
           C   +  SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G
Sbjct: 39  CREDQEVSYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISG 98

Query: 70  SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSIL 129
             D+S+AQ+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+IL
Sbjct: 99  IPDVSRAQFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNIL 158

Query: 130 WKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSD 189
           WKTP R++SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D
Sbjct: 159 WKTPDRSISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFAD 218

Query: 190 ANGVKEALAALSGPVIIARGGL 211
           +  +K AL+AL+ PV+ ARGGL
Sbjct: 219 SAMLKGALSALTAPVLSARGGL 240

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|58532129|emb|CAE04131.3| OSJNBa0009P12.18 [Oryza sativa Japonica Group]

 Score =  267 bits (682), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/202 (65%), Positives = 164/202 (81%)

Query: 10  CFPGRAFSYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGG 69
           C   +  SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G
Sbjct: 39  CREDQEVSYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISG 98

Query: 70  SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSIL 129
             D+S+AQ+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+IL
Sbjct: 99  IPDVSRAQFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNIL 158

Query: 130 WKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSD 189
           WKTP R++SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D
Sbjct: 159 WKTPDRSISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFAD 218

Query: 190 ANGVKEALAALSGPVIIARGGL 211
           +  +K AL+AL+ PV+ ARGGL
Sbjct: 219 SAMLKGALSALTAPVLSARGGL 240

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115460232|ref|NP_001053716.1| Os04g0592500 [Oryza sativa Japonica Group] gi|113565287|dbj|BAF15630.1| Os04g0592500 [Oryza sativa Japonica Group] gi|215694978|dbj|BAG90169.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  266 bits (679), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 162/195 (83%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G  D+S+A
Sbjct: 45  SYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISGIPDVSRA 104

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+ILWKTP R+
Sbjct: 105 QFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNILWKTPDRS 164

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D+  +K A
Sbjct: 165 ISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFADSAMLKGA 224

Query: 197 LAALSGPVIIARGGL 211
           L+AL+ PV+ ARGGL
Sbjct: 225 LSALTAPVLSARGGL 239

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222629458|gb|EEE61590.1| hypothetical protein OsJ_15984 [Oryza sativa Japonica Group]

 Score =  266 bits (679), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 132/195 (67%), Positives = 162/195 (83%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G  D+S+A
Sbjct: 45  SYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISGIPDVSRA 104

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL LS+ILWKTP R+
Sbjct: 105 QFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLSNILWKTPDRS 164

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D+  +K A
Sbjct: 165 ISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFADSAMLKGA 224

Query: 197 LAALSGPVIIARGGL 211
           L+AL+ PV+ ARGGL
Sbjct: 225 LSALTAPVLSARGGL 239

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218195467|gb|EEC77894.1| hypothetical protein OsI_17201 [Oryza sativa Indica Group]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 131/195 (67%), Positives = 161/195 (82%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+AGRGVVV DK F NL  SELQ+ GA   E LSG+P++VRGN++ G  D+S+A
Sbjct: 45  SYGLNWAIAGRGVVVKDKVFYNLEKSELQKGGAAYTECLSGIPLHVRGNVISGIPDVSRA 104

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLK VT HLSSI++++VQDGAVGSS ECDAKVRVISD+PSAVL L +ILWKTP R+
Sbjct: 105 QFAKLLKLVTFHLSSISSLYVQDGAVGSSVECDAKVRVISDNPSAVLLLYNILWKTPDRS 164

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++G  +Q  NGF AADIERSSLILCGK F+D+  +K A
Sbjct: 165 ISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLILCGKAFADSAMLKGA 224

Query: 197 LAALSGPVIIARGGL 211
           L+AL+ PV+ ARGGL
Sbjct: 225 LSALTAPVLSARGGL 239

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460742|ref|XP_004148104.1| PREDICTED: uncharacterized protein LOC101222903 [Cucumis sativus]

 Score =  264 bits (674), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 129/201 (64%), Positives = 156/201 (77%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           S+GLN ALAG+GV+V DK FQNL +SEL QKGAT+AE LSG P++VRG+   GSS+ISK 
Sbjct: 7   SHGLNSALAGKGVLVLDKVFQNLKSSELFQKGATVAEFLSGFPIHVRGHTFQGSSNISKP 66

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+ KLLKQVT+H+SSI+N++V DGA+G  S  +  +R+ISD PS+VL  S+I+W+T SRA
Sbjct: 67  QFTKLLKQVTSHISSISNIYVHDGAIGPRSTGNVNIRMISDGPSSVLAFSNIIWETSSRA 126

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +S DSCPLTVY   SISPGV N++GL  +GD GFIAADIE S LILCG  FSD NG KE 
Sbjct: 127 ISQDSCPLTVYSAESISPGVRNSIGLGTEGDKGFIAADIEHSMLILCGTAFSDINGTKET 186

Query: 197 LAALSGPVIIARGGLLLCARC 217
           L ALS PVI ARGGL L  R 
Sbjct: 187 LVALSEPVIFARGGLPLPGRL 207

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326510085|dbj|BAJ87259.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/195 (65%), Positives = 159/195 (81%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+A RGVVV DK F NL  SELQ+ G T AE LSG P++V+GN++GG  DIS+ 
Sbjct: 40  SYGLNWAIATRGVVVKDKVFYNLEPSELQKSGTTCAERLSGTPLHVKGNVIGGFPDISRG 99

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLKQVT HLSSI++++VQDGA+GSS+ECDAKVRVISD+PSA++ LS+IL KTP RA
Sbjct: 100 QFAKLLKQVTFHLSSISSLYVQDGAIGSSTECDAKVRVISDNPSAIMSLSNILQKTPDRA 159

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V NA+G   Q  NG   ADIERSSLILCGK F+D+  +K+A
Sbjct: 160 ISHDTCPLTIYVASSISTNVRNALGSGTQYANGVAVADIERSSLILCGKAFADSAMLKDA 219

Query: 197 LAALSGPVIIARGGL 211
           L AL+ P++ ARGGL
Sbjct: 220 LTALAAPILSARGGL 234

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357165607|ref|XP_003580437.1| PREDICTED: uncharacterized protein LOC100830278 [Brachypodium distachyon]

 Score =  261 bits (666), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 124/195 (63%), Positives = 161/195 (82%)

Query: 17  SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKA 76
           SYGLNWA+A RGVVV DK F NL TSELQ+ GAT AE LSG+P++V+GN++ G  +I+ A
Sbjct: 40  SYGLNWAIAARGVVVKDKVFYNLETSELQKGGATYAEHLSGIPLHVKGNVISGVPNITGA 99

Query: 77  QYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRA 136
           Q+AKLLKQVT HLSS+++++VQDGA+GSS++CDAKVRVISD+PSA++ LS++LWK P RA
Sbjct: 100 QFAKLLKQVTFHLSSVSSIYVQDGAIGSSADCDAKVRVISDNPSAIMLLSNVLWKIPDRA 159

Query: 137 VSHDSCPLTVYVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEA 196
           +SHD+CPLT+YV +SIS  V N++    Q  NGF AADIERSSLILCGK F+D+  +K+A
Sbjct: 160 ISHDTCPLTIYVASSISTNVRNSLDSGTQYANGFAAADIERSSLILCGKAFADSTMLKDA 219

Query: 197 LAALSGPVIIARGGL 211
           L AL+ P++ AR GL
Sbjct: 220 LTALTVPILSARRGL 234

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
DICTYBASE|DDB_G0290857	519	DDB_G0290857 [Dictyostelium di	0.662	0.321	0.220	0.00021

DICTYBASE|DDB_G0290857 DDB_G0290857 [Dictyostelium discoideum (taxid:44689)]

 Score = 111 (44.1 bits), Expect = 0.00021, Sum P(2) = 0.00021
 Identities = 39/177 (22%), Positives = 77/177 (43%)

Query:    31 VNDKAFQNLTTSELQQKGATIAESLSGLPVYVRGNLLGGSSDISKAQYAKLLKQVTAHLS 90
             V DK    L TS   Q+   +        +  + N    S  IS A Y  +L++V  ++S
Sbjct:   106 VTDKN-NVLITSSSSQEPKNVVNFFLDETISSKNNK-DSSKVISIADYKLVLEKVKQNIS 163

Query:    91 SIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTT 150
                N++V D AVGS  + ++K+R +++   + L +  +L  T    V+     LTVY   
Sbjct:   164 ESTNIYVHDSAVGSCRDVESKIRFVTNDAVSSLFVKHLLPTTTPTQVNEFKHQLTVYCVP 223

Query:   151 SIS-PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVII 206
                 P   +++       + F   D +R   ++ G        ++  ++++S  +++
Sbjct:   224 EFKFPSSSSSLP-----SSSFNIIDTKRGIAVIVG--IQSTENIRNVISSISSNILM 273

GO:0017076 "purine nucleotide binding" evidence=IEA

GO:0006094 "gluconeogenesis" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004612 "phosphoenolpyruvate carboxykinase (ATP) activity" evidence=IEA

GO:0004611 "phosphoenolpyruvate carboxykinase activity" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam01293	467	pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxyk	6e-05
PRK09344	526	PRK09344, PRK09344, phosphoenolpyruvate carboxykin	0.003

>gnl|CDD|216417 pfam01293, PEPCK_ATP, Phosphoenolpyruvate carboxykinase

 Score = 43.3 bits (103), Expect = 6e-05
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVIS 116
           IS  ++  L ++V  +LS   ++FV D   G+  +   KVRV++
Sbjct: 68  ISPEKFDALKERVLDYLSG-KDLFVVDLFAGADPDYRLKVRVVT 110

Length = 467

>gnl|CDD|236471 PRK09344, PRK09344, phosphoenolpyruvate carboxykinase; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVL 123
           IS  ++  L ++V A+LS   ++FV DG  G+  E    VRVI++     L
Sbjct: 82  ISPEKFDALKQKVLAYLSG-KDLFVVDGFAGADPEYRLPVRVITELAWHAL 131

Length = 526

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
COG1866	529	PckA Phosphoenolpyruvate carboxykinase (ATP) [Ener	100.0
PLN02597	555	phosphoenolpyruvate carboxykinase [ATP]	100.0
TIGR00224	532	pckA phosphoenolpyruvate carboxykinase (ATP). Invo	100.0
PTZ00311	561	phosphoenolpyruvate carboxykinase; Provisional	100.0
cd00484	508	PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK	100.0
PF01293	466	PEPCK_ATP: Phosphoenolpyruvate carboxykinase The P	100.0
PRK09344	526	phosphoenolpyruvate carboxykinase; Provisional	100.0
cd01919	515	PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a	100.0

>COG1866 PckA Phosphoenolpyruvate carboxykinase (ATP) [Energy production and conversion]

Probab=100.00  E-value=5.1e-69  Score=514.90  Aligned_cols=201  Identities=22%  Similarity=0.320  Sum_probs=189.6

Q ss_pred             hhhhhhCCCCcCcceeecCChHHHHHHHh----hccccCCceEEEe-------------------eccccCC--CCCCCH
Q 025479           21 NWALAGRGVVVNDKAFQNLTTSELQQKGA----TIAESLSGLPVYV-------------------RGNLLGG--SSDISK   75 (252)
Q Consensus        21 n~~L~~~gi~~~~~v~~Nl~~~~L~E~a~----~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~   75 (252)
                      ...++.+|+.....+++|+++++|+|+++    +.++++|||+|+|                   ++.|||+  ||||++
T Consensus         7 ~~~~~~~~~~~~~~v~~n~s~~~L~e~~i~~~eg~lt~~Gal~~~TG~~TGRSPkDkfiV~~~~t~~~i~W~~~Nkpi~~   86 (529)
T COG1866           7 AQELEALGIRDVEDVVYNLSAAQLYEEAIRRGEGVLTATGALRVDTGIYTGRSPKDKFIVRDDSTRDTIWWGTRNKPISP   86 (529)
T ss_pred             hhhHHHhcccchHHHHhcCCHHHHHHHHhhcCCCccCCCCceEEecccccCCCCCCceEEecCcccccccccccCccCCH
Confidence            45688899988789999999999999985    4678999999999                   3459986  899999


Q ss_pred             HHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCC
Q 025479           76 AQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPG  155 (252)
Q Consensus        76 e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~fTIi~aP~f~ad  155 (252)
                      |+|++|+.+|.+||++ ++|||+|++||||+++|++||||||.|||+||+|||||||+.||+..|+|||||+++|+|+||
T Consensus        87 e~f~~L~~~~~~yl~~-k~lfv~d~~~Ga~~~~~l~vrvvte~Awh~lF~~nlfIrP~~e~l~~~~~dftvin~p~f~~~  165 (529)
T COG1866          87 ETFDRLKGDVTDYLSG-KDLFVVDGFAGADPDYRLPVRVVTEVAWHALFIRNLFIRPTGEELSTFKPDFTVINAPSFKAD  165 (529)
T ss_pred             HHHHHHHHHHHHHhcc-CcEEEEEeeecCCccceeeeEeehhhHHHHHHHHhcccccchhhhccCCCCeEEEeCCcCCCC
Confidence            9999999999999999 579999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeecccc
Q 025479          156 VVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWCGT  228 (252)
Q Consensus       156 p~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLSGT  228 (252)
                      | ..||+||   |+||++||++|++|||||+  |+|||||+|||||||+||.+|||||  |||+    |+|||||||||
T Consensus       166 ~-~~~g~~S---e~~i~~n~~~~~~lIggT~--YaGEMKK~~fs~mnylLP~~~i~~MHcsANvG~~gdvalFFGLSGT  238 (529)
T COG1866         166 P-KRDGLRS---ETFVAFNFTERIVLIGGTW--YAGEMKKGIFSVMNYLLPLKGILSMHCSANVGEKGDVALFFGLSGT  238 (529)
T ss_pred             h-hhccccc---ccEEEEecccceeeeeccc--hhhhhhhhHHHHhhccccccccccceeccccCcCCCeEEEEeccCC
Confidence            8 5559999   8999999999999999999  8999999999999999999999999  8999    59999999998

>PLN02597 phosphoenolpyruvate carboxykinase [ATP]

Probab=100.00  E-value=9.5e-67  Score=508.42  Aligned_cols=200  Identities=19%  Similarity=0.252  Sum_probs=184.7

Q ss_pred             hhhhhCCCCcCcceeecCChHHHHHHHh----hccc-cCCceEEEe-------------------eccccCC----CCCC
Q 025479           22 WALAGRGVVVNDKAFQNLTTSELQQKGA----TIAE-SLSGLPVYV-------------------RGNLLGG----SSDI   73 (252)
Q Consensus        22 ~~L~~~gi~~~~~v~~Nl~~~~L~E~a~----~~~~-~~Gal~v~T-------------------~~~v~~~----N~pi   73 (252)
                      ..|+..|++. .++||||++++|||+|+    |.+. ++|||+|+|                   ++.|||+    |+||
T Consensus        23 ~~~~~~~~~~-~~v~~nl~~~~Lye~Al~~~eG~l~~~~GaL~v~TGk~TGRSP~DKfIV~d~~t~~~iwWg~g~vN~p~  101 (555)
T PLN02597         23 IDVSDSGLKF-THVLYNLSPAELYEQAIKYEKGSFITSTGALATLSGAKTGRSPKDKRVVRDETTEDELWWGKGSPNIEM  101 (555)
T ss_pred             cccccccCCc-ceEEeCCCHHHHHHHHHHhCCCeEEecCCCEEecCCCcCCCCcccceecCCCCcccceeccCCccCccC
Confidence            4567888887 58999999999999995    4433 599999999                   3359873    8999


Q ss_pred             CHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCC-CCCeEEEEcCCC
Q 025479           74 SKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSI  152 (252)
Q Consensus        74 s~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f-~p~fTIi~aP~f  152 (252)
                      ++++|++|++||++||+++++|||+|+||||||+||++||||||.||||||+|||||||+.+|+++| +|||||||+|+|
T Consensus       102 ~~~~f~~l~~~~~~~l~~~~~lfv~D~~~Gad~~~r~~vRvite~aw~alF~~nmfirP~~~el~~f~~PdftIi~ap~f  181 (555)
T PLN02597        102 DEETFLVNRERAVDYLNSLDKVFVNDQFLNWDPENRIKVRIVSARAYHSLFMHNMCIRPTPEELEDFGTPDFTIYNAGQF  181 (555)
T ss_pred             CHHHHHHHHHHHHHHHccCCCEEEEeeeeccCccceeeEEEEeCHHHHHHHHHhcCCCCChHHhccCCCCCEEEEeCCCC
Confidence            9999999999999999986779999999999999999999999999999999999999999999999 999999999999


Q ss_pred             CCCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeecc
Q 025479          153 SPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWC  226 (252)
Q Consensus       153 ~adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLS  226 (252)
                      ++|| ..|||+|   |+||++||++|++|||||+  |+|||||||||+|||+||+||+|||  |||+    ++++|||||
T Consensus       182 ~a~~-~~~g~~S---e~~i~in~~~~~~lI~GT~--YaGE~KK~iFs~~~~ll~~rg~l~mHasaNv~~~g~~~lffGlS  255 (555)
T PLN02597        182 PCNR-YTHYMTS---STSIDLNLKRKEMVILGTQ--YAGEMKKGLFSLMHYLMPMRGILSLHSGCNMGKDGDVALFFGLS  255 (555)
T ss_pred             CCCc-cccCCCC---CcEEEEEccCCeEEEEccc--hhhhhHHHHHHHHHHHHHHCCcEeecCeeccCCCCcEEEEEecC
Confidence            9999 5559999   8999999999999999999  8999999999999999999999999  7777    389999999


Q ss_pred             cc
Q 025479          227 GT  228 (252)
Q Consensus       227 GT  228 (252)
                      ||
T Consensus       256 Gt  257 (555)
T PLN02597        256 GT  257 (555)
T ss_pred             CC
Confidence            97

>TIGR00224 pckA phosphoenolpyruvate carboxykinase (ATP)

Probab=100.00  E-value=1.6e-65  Score=498.88  Aligned_cols=204  Identities=18%  Similarity=0.244  Sum_probs=189.0

Q ss_pred             chhhhhhhhCCCCcCcceeecCChHHHHHHHhhc---------cccCCceEEEe-------------------eccccCC
Q 025479           18 YGLNWALAGRGVVVNDKAFQNLTTSELQQKGATI---------AESLSGLPVYV-------------------RGNLLGG   69 (252)
Q Consensus        18 y~~n~~L~~~gi~~~~~v~~Nl~~~~L~E~a~~~---------~~~~Gal~v~T-------------------~~~v~~~   69 (252)
                      .++-..|+.+|+.+..++||||++++|+|+|+.+         ++++|||+|.|                   ++.||||
T Consensus         4 ~~~~~~l~~~g~~~~~~v~~Nl~~~~L~e~a~~~~~~~~~eg~~t~~Gal~v~TG~~TGRSpkDK~IV~~~~t~~~i~Wg   83 (532)
T TIGR00224         4 VLTPQELEALGISDVHDIVYNPSYAQLYEEELKPSLTGYEKGVLTSTGAVAVDTGIFTGRSPKDKYIVEDETTKDTIWWG   83 (532)
T ss_pred             hhhhhhHHhcCCCCCceEEeCCCHHHHHHHHHhhccccCCCceeccCCceEEecCCeeCCCcCceEEeCCCCcccccccC
Confidence            3455677888898877899999999999999744         67999999999                   2359987


Q ss_pred             --CCCCCHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCeEEE
Q 025479           70 --SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVY  147 (252)
Q Consensus        70 --N~pis~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~fTIi  147 (252)
                        |+||++++|+.|+++|.+||+. +++||+|+|||+||+||++||||||+||||||+|||||||+.+|++.|+||||||
T Consensus        84 ~vN~p~~~~~f~~L~~~v~~~l~~-~~lyv~D~~~GaDp~~rl~vRvite~AwhalF~~nmfirP~~eel~~fePdftI~  162 (532)
T TIGR00224        84 PVNKPLSEETWQHLKGLVTRQLSR-KRLFVVDAFCGADPKYRLSVRVVTEVAWQAHFVKNMFIRPTEEELAGFEPDFTVM  162 (532)
T ss_pred             cCCcCCCHHHHHHHHHHHHHHhcC-CCEEEEeeeeccCcccceeEEEEEcHHHHHHHHHhhCCCCChHHhccCCCCEEEE
Confidence              9999999999999999999996 7899999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCC-CCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cce
Q 025479          148 VTTSIS-PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCN  220 (252)
Q Consensus       148 ~aP~f~-adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~a  220 (252)
                      ++|+|+ +|| .+||++|   ++||++||++|++|||||+  |+|||||||||+|||+||+||+|||  |||+    +++
T Consensus       163 ~~p~f~~ad~-~~~g~~S---~~~i~in~~~~~~lI~GT~--YaGEiKKgiFs~~~~ll~~rg~l~lH~sanv~~~g~~~  236 (532)
T TIGR00224       163 NGAKFTNPNW-KEQGLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKGILSMHCSANVGEKGDVA  236 (532)
T ss_pred             eCCCCCCCCc-ccCCCCc---CcEEEEecccCeEEEECcc--hhhhhHHHHHHHHHHHHHhCCeEeecCeeeeCCCCCEE
Confidence            999999 998 6669998   8999999999999999999  8999999999999999999999999  6776    489


Q ss_pred             eeeecccc
Q 025479          221 CFFSWCGT  228 (252)
Q Consensus       221 lFFGLSGT  228 (252)
                      +|||||||
T Consensus       237 ~ffGlSGt  244 (532)
T TIGR00224       237 LFFGLSGT  244 (532)
T ss_pred             EEEecCCC
Confidence            99999997

Involved in the gluconeogenesis pathway. It converts oxaloacetic acid to phosphoenolpyruvate using ATP. Enzyme is a monomer. The reaction is also catalysed by phosphoenolpyruvate carboxykinase (GTP) (EC 4.1.1.32) using GTP instead of ATP, described in PROSITE:PDOC00421

>PTZ00311 phosphoenolpyruvate carboxykinase; Provisional

Probab=100.00  E-value=4.1e-65  Score=498.84  Aligned_cols=205  Identities=22%  Similarity=0.285  Sum_probs=189.1

Q ss_pred             cchhhhhhhhCCCCcCcceeecCChHHHHHHHh-----hccccCCceEEEe-------------------eccccCC--C
Q 025479           17 SYGLNWALAGRGVVVNDKAFQNLTTSELQQKGA-----TIAESLSGLPVYV-------------------RGNLLGG--S   70 (252)
Q Consensus        17 ~y~~n~~L~~~gi~~~~~v~~Nl~~~~L~E~a~-----~~~~~~Gal~v~T-------------------~~~v~~~--N   70 (252)
                      .-.+...|+.+||++ .++||||++++|+|+|+     +.++++|+|+|.|                   ++.||||  |
T Consensus        27 ~~~~~~~l~~~g~~~-~~i~~Nl~~~~L~E~al~~~~~g~~t~~GaL~v~TG~~TGRSpkDKfIV~~~~~~d~i~Wg~vN  105 (561)
T PTZ00311         27 ETQLEEELHKLGLHN-TTIHRNLTVPELYEHALKYEKNTSITSTGALCVYSGAKTGRSPKDKRIVKEDSSEDDIWWGKVN  105 (561)
T ss_pred             cchhhccHhhcCCCC-CeEEeCCCHHHHHHHHHhhcCCcEEecCCceEEecCCccCCCCCceEEeCCCCcccccccCccC
Confidence            345567888889987 48999999999999997     3577999999999                   2359987  9


Q ss_pred             CCCCHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCcccc----CCCCCCeEE
Q 025479           71 SDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAV----SHDSCPLTV  146 (252)
Q Consensus        71 ~pis~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el----~~f~p~fTI  146 (252)
                      +||++++|+.|+++|.+||+++++|||+|+|||+||+||++||||||.||||||++||||||+.+|+    +.|+|||||
T Consensus       106 ~p~~~~~f~~L~~~~~~yl~~~~~lyv~D~~vGaDp~~~l~vRvit~~a~~alF~~nmfirP~~~el~~~~~~f~PdftI  185 (561)
T PTZ00311        106 IPLSEESFEINKKRAIDYLNTRERLFVVDGYAGWDPKYRLKVRVITTRAYHALFMRNMLIRPTNEELKKFGEDFVPDFTI  185 (561)
T ss_pred             ccCCHHHHHHHHHHHHHHHhcCCCEEEEeeeeecCcccceeEEEEecHHHHHHHHHHCCCCCChHHhhccccCCCCCEEE
Confidence            9999999999999999999766789999999999999999999999999999999999999999999    899999999


Q ss_pred             EEcCCCCCCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cce
Q 025479          147 YVTTSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCN  220 (252)
Q Consensus       147 i~aP~f~adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~a  220 (252)
                      |++|+|++|| ..|||+|   |+||++||++|++|||||+  |+|||||||||+|||+||+||+|||  |||+    +++
T Consensus       186 i~~P~f~a~~-~~~G~~s---e~~i~in~~~~~~lI~GT~--YaGEiKKgiFt~~~~ll~~rg~l~lHasa~v~~~g~~~  259 (561)
T PTZ00311        186 YNAGEFKANR-LIEGVTS---ETSVALNFKRREMVILGTQ--YAGEMKKGILTVMMYLMPKQGVLPLHSSANVGKKGDVT  259 (561)
T ss_pred             EECCCCCCCc-ccCCCCc---ccEEEEEccCCeEEEEccc--chhhhHHHHHHHHHHHHHHCCceeeeeeEeeCCCCCEE
Confidence            9999999999 5559998   8999999999999999999  8999999999999999999999999  5665    489


Q ss_pred             eeeecccc
Q 025479          221 CFFSWCGT  228 (252)
Q Consensus       221 lFFGLSGT  228 (252)
                      +|||||||
T Consensus       260 ~ffGlSGt  267 (561)
T PTZ00311        260 LFFGLSGT  267 (561)
T ss_pred             EEEccCCC
Confidence            99999997

>cd00484 PEPCK_ATP Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=100.00  E-value=6.4e-64  Score=487.18  Aligned_cols=188  Identities=20%  Similarity=0.352  Sum_probs=177.7

Q ss_pred             ceeecCChHHHHHHH----hhccccCCceEEEe-------------------eccccCC--CCCCCHHHHHHHHHHHHHH
Q 025479           34 KAFQNLTTSELQQKG----ATIAESLSGLPVYV-------------------RGNLLGG--SSDISKAQYAKLLKQVTAH   88 (252)
Q Consensus        34 ~v~~Nl~~~~L~E~a----~~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~F~~L~~~v~~y   88 (252)
                      ++||||++++|+|+|    ++.++++|+|+|.|                   ++.||||  |+||++++|++|+++|.+|
T Consensus         2 ~v~~Nls~~eL~E~A~~~~eg~~t~~GaL~v~TG~~TGRSPkDkfIV~~~~t~~~i~wg~vn~~~~~~~f~~L~~~~~~y   81 (508)
T cd00484           2 HIHHNLSPAELYEEALKRGEGVLTSTGALAVDTGKKTGRSPKDKFIVDEPSSEDDIWWGKVNQPISEETFEILRERAVDY   81 (508)
T ss_pred             ccccCCCHHHHHHHHHhCCCCEEecCCCeEeccCCccCCCCCceeEeCCCCccccccccccCcCCCHHHHHHHHHHHHHH
Confidence            579999999999999    45788999999999                   2359987  9999999999999999999


Q ss_pred             HcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCCCCccCCcCCCCCC
Q 025479           89 LSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGDN  168 (252)
Q Consensus        89 L~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~fTIi~aP~f~adp~~~~Gt~Se~se  168 (252)
                      |++ ++|||+|+|||+||+||++||||||.||||||+|||||||+.+|+++|.||||||++|+|++|| ..|||+|   |
T Consensus        82 l~~-~~lyv~D~~vGadp~~r~~vRvi~~~a~~alF~~nmfi~P~~eel~~f~pdftI~~~P~f~~~~-~~~G~~s---~  156 (508)
T cd00484          82 LNT-KKLFVFDGFAGADPEYRLKVRVITERAWHALFMRNMFIRPTEEELENFGPDFTIYNAPKFKANP-ETDGMNS---E  156 (508)
T ss_pred             hcC-CCEEEEeeeeecCcccceeeEEEECHHHHHHHHHhCCCCCChHHhccCCcCEEEEECCCCcCCc-cccCCCc---c
Confidence            999 6799999999999999999999999999999999999999999999999999999999999999 6669999   7


Q ss_pred             eEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeecccc
Q 025479          169 GFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWCGT  228 (252)
Q Consensus       169 tfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLSGT  228 (252)
                      +||++||++|++|||||+  |+|||||||||+|||+||+||+|||  |||+    ++++|||||||
T Consensus       157 ~~iiin~~~~~~lI~GT~--YaGEiKKgif~~~~~ll~~~g~l~lH~sanv~~~~~~~~ffGlSGt  220 (508)
T cd00484         157 TFVIINFAEREMVIGGTE--YAGEMKKGIFSVMNYLLPKKGVLSMHCSANVGKKGDVALFFGLSGT  220 (508)
T ss_pred             cEEEEEccCCeEEEECcc--chhhhHHHHHHHHHHHHHhCCcEeeccccccCCCCCEEEEEecCCC
Confidence            999999999999999999  8999999999999999999999999  6776    48999999997

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity, this model describes the ATP-dependent groups.

>PF01293 PEPCK_ATP: Phosphoenolpyruvate carboxykinase The Prosite pattern is specific to the ATP binding region; InterPro: IPR001272 Phosphoenolpyruvate carboxykinase (PEPCK) catalyses the first committed (rate-limiting) step in hepatic gluconeogenesis, namely the reversible decarboxylation of oxaloacetate to phosphoenolpyruvate (PEP) and carbon dioxide, using either ATP or GTP as a source of phosphate

Probab=100.00  E-value=8.8e-62  Score=470.17  Aligned_cols=189  Identities=24%  Similarity=0.379  Sum_probs=160.2

Q ss_pred             cceeecCChHHHHHHH----hhccccCCceEEEe-------------------eccccCC--CCCCCHHHHHHHHHHHHH
Q 025479           33 DKAFQNLTTSELQQKG----ATIAESLSGLPVYV-------------------RGNLLGG--SSDISKAQYAKLLKQVTA   87 (252)
Q Consensus        33 ~~v~~Nl~~~~L~E~a----~~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~F~~L~~~v~~   87 (252)
                      .++||||++++|+|+|    ++.++++|||+|.|                   ++.|||+  |+||++++|++|+++|.+
T Consensus         2 ~~v~~Nls~~~L~e~a~~~~eg~lt~~Gal~v~tG~~TGRSp~dkfIV~~~~~~~~v~Wg~~n~~i~~e~f~~L~~~v~~   81 (466)
T PF01293_consen    2 ANVYRNLSPPELYEEAIKRGEGVLTKTGALVVNTGKFTGRSPKDKFIVDEPGTEDKVWWGSVNQPISEEQFEKLLERVVD   81 (466)
T ss_dssp             SEEEES--HHHHHHHHCHTTTEEE-TTSSEEE--TT-SSB-GGGEEEE-STTTTTTS-BTTSBEEE-HHHHHHHHHHHHH
T ss_pred             CeeEeCCCHHHHHHHHHhcCCCEEccCCCEEEeCCCccCCCCCceEEecCCccccccccccCCcccCHHHHHHHHHHHHH
Confidence            4789999999999999    67899999999999                   2359986  899999999999999999


Q ss_pred             HHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCCCCccCCcCCCCC
Q 025479           88 HLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVVNAVGLRAQGD  167 (252)
Q Consensus        88 yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~fTIi~aP~f~adp~~~~Gt~Se~s  167 (252)
                      ||+++ +|||+|++||+||+||++||||||.||||||++|||+||+.+|+++|+|||||+++|+|++||+.+ |++|   
T Consensus        82 yL~~k-~lyv~D~~vG~d~~~~~~vRvit~~a~~aLF~~nL~~~p~~~e~~~f~pd~tI~~~p~f~~~p~~~-g~~s---  156 (466)
T PF01293_consen   82 YLSTK-ELYVQDGYVGADPDYRIKVRVITERAWHALFARNLFIRPPPEELQNFEPDFTIINAPDFKADPEID-GTNS---  156 (466)
T ss_dssp             HHTTS-EEEEEEEEESSSTTT-EEEEEEESSHHHHHHHHHHSB-GSHHHHHT-S-SEEEEEETTS--TTCHC-T-SS---
T ss_pred             Hhccc-ceEEEEEEEecCHHHceeEEEEeCcHHHHHHHHHhhcCCChhHhcccCCCEEEEeCCccccCCCcC-CCCC---
Confidence            99995 999999999999999999999999999999999999999999999999999999999999999666 9998   


Q ss_pred             CeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeecccc
Q 025479          168 NGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWCGT  228 (252)
Q Consensus       168 etfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLSGT  228 (252)
                      ++||++|+++|++||+||+  |+|||||++||+|||+||++|+|||  |||+    |+++|||||||
T Consensus       157 ~~~i~~d~~~~~~vI~Gt~--Y~GEiKK~ift~~n~ll~~~g~l~mH~san~~~~gd~alfFGLSGT  221 (466)
T PF01293_consen  157 DTFIIFDFERNVAVILGTR--YAGEIKKGIFTVMNYLLPRNGVLPMHCSANVGKDGDTALFFGLSGT  221 (466)
T ss_dssp             S-EEEEETTTTEEEEES-----THHHHHHHHHHHHHHHHHTT-EEEEEEEEEETTSSEEEEEESTTS
T ss_pred             CcEEEEccccCeEEEECCc--ccccchHHHHHHHHHhhHhcCeEEEEeeeeeCCCCCeEEEEecCCC
Confidence            7999999999999999999  7999999999999999999999999  5666    58999999994

The ATP-utilising (4.1.1.49 from EC) and GTP-utilising (4.1.1.32 from EC) enzymes form two divergent subfamilies, which have little sequence similarity but which retain conserved active site residues. ATP-utilising PEPCKs are monomers or oligomers of identical subunits found in certain bacteria, yeast, trypanosomatids, and plants, while GTP-utilising PEPCKs are mainly monomers found in animals and some bacteria []. Both require divalent cations for activity, such as magnesium or manganese. One cation interacts with the enzyme at metal binding site 1 to elicit activation, while the second cation interacts at metal binding site 2 to serve as a metal-nucleotide substrate. In bacteria, fungi and plants, PEPCK is involved in the glyoxylate bypass, an alternative to the tricarboxylic acid cycle. PEPCK helps to regulate blood glucose levels. The rate of gluconeogenesis can be controlled through transcriptional regulation of the PEPCK gene by cAMP (the mediator of glucagon and catecholamines), glucocorticoids and insulin. In general, PEPCK expression is induced by glucagon, catecholamines and glucocorticoids during periods of fasting and in response to stress, but is inhibited by (glucose-induced) insulin upon feeding []. With type II diabetes, this regulation system can fail, resulting in increased gluconeogenesis that in turn raises glucose levels []. PEPCK consists of an N-terminal and a catalytic C-terminal domain, with the active site and metal ions located in a cleft between them. Both domains have an alpha/beta topology that is partly similar to one another [, ]. Substrate binding causes PEPCK to undergo a conformational change, which accelerates catalysis by forcing bulk solvent molecules out of the active site []. PCK uses an alpha/beta/alpha motif for nucleotide binding, this motif differing from other kinase domains. GTP-utilising PEPCK has a PEP-binding domain and two kinase motifs to bind GTP and magnesium. This entry represents ATP-utilising phosphoenolpyruvate carboxykinase enzymes.; GO: 0004612 phosphoenolpyruvate carboxykinase (ATP) activity, 0005524 ATP binding, 0006094 gluconeogenesis; PDB: 2PY7_X 2OLR_A 1AYL_A 1K3D_A 1OEN_A 1AQ2_A 1OS1_A 2OLQ_A 1K3C_A 2PXZ_X ....

>PRK09344 phosphoenolpyruvate carboxykinase; Provisional

Probab=100.00  E-value=5.8e-60  Score=461.87  Aligned_cols=199  Identities=21%  Similarity=0.308  Sum_probs=186.4

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHHHh----hccccCCceEEEe-------------------eccccCC--CCCCCHHH
Q 025479           23 ALAGRGVVVNDKAFQNLTTSELQQKGA----TIAESLSGLPVYV-------------------RGNLLGG--SSDISKAQ   77 (252)
Q Consensus        23 ~L~~~gi~~~~~v~~Nl~~~~L~E~a~----~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~   77 (252)
                      .|+.+||++..++||||++++|+|+|+    +.++++|+|+|.|                   ++.|||+  |+||++++
T Consensus         7 ~l~~~g~~~~~~i~~n~~~~~L~e~a~~~~~g~~t~~Gal~~~tG~~tGRSp~dk~iV~~~~~~~~i~wg~~n~~~~~~~   86 (526)
T PRK09344          7 DLEAYGITNLSNVHYNLSYAELYEEALRRGEGVLTDTGALAVDTGKFTGRSPKDKFIVRDPSTEDTIWWGDDNKPISPEK   86 (526)
T ss_pred             chhhcCCCCcceeEeCCCHHHHHHHHHHcCCCeeccCCceEEecCCccCCCcCceeeecCccccccccccccCCCCCHHH
Confidence            388999998889999999999999994    5788999999999                   2358986  99999999


Q ss_pred             HHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCeEEEEcCCCCCCCC
Q 025479           78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTVYVTTSISPGVV  157 (252)
Q Consensus        78 F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~fTIi~aP~f~adp~  157 (252)
                      |+.|++++.+||+++ ++||+|++||+||+||++||||||+|||+||++|||+||+.+|++.|+||||||++|+|+++| 
T Consensus        87 f~~l~~~~~~~l~~~-~lyv~d~~vG~d~~~~~~vrvi~~~a~~~lf~~nlf~~p~~~e~~~~~Pd~~ii~~p~~~~~~-  164 (526)
T PRK09344         87 FDALKQKVLAYLSGK-DLFVVDGFAGADPEYRLPVRVITELAWHALFVRNLFIRPSEEELASFEPDFTIINAPKFKADP-  164 (526)
T ss_pred             HHHHHHHHHHHhcCC-cEEEEeeeecCChhHeeeEEEEecHHHHHHHHhhcCCCCChhHhccCCCCEEEEEcCCCCCCc-
Confidence            999999999999995 899999999999999999999999999999999999999999999999999999999999997 


Q ss_pred             ccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCCC----ceeeeecccc
Q 025479          158 NAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARCR----CNCFFSWCGT  228 (252)
Q Consensus       158 ~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni~----~alFFGLSGT  228 (252)
                      .+||++|   +++|++|+++|.++||||+  |+|||||++||+|||+||+||+|||  |||++    +++|||||||
T Consensus       165 ~~~g~~s---~~~i~~~~~~~~~~I~Gt~--Y~GE~KK~~lt~~~~~l~~rg~l~lH~sa~i~~~g~~~~ffGlSGt  236 (526)
T PRK09344        165 ERDGTNS---ETFIAINFTERIVLIGGTD--YAGEMKKSIFSVMNYLLPLKGVLPMHCSANVGEEGDVALFFGLSGT  236 (526)
T ss_pred             cccCCCC---CceEEEecccCeEEEEcch--hHHHHHHHHHHHHHHHHHHCCcEeeeCeeecCCCCcEEEEEeecCC
Confidence            6669998   7999999999999999999  7999999999999999999999999  45663    6899999996

>cd01919 PEPCK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=100.00  E-value=6e-51  Score=398.41  Aligned_cols=189  Identities=17%  Similarity=0.168  Sum_probs=173.2

Q ss_pred             ceeecCChHHHHHHHhh-----ccccCCceEEEe-------------------ecccc----CC--CCCCCHHHHHHHHH
Q 025479           34 KAFQNLTTSELQQKGAT-----IAESLSGLPVYV-------------------RGNLL----GG--SSDISKAQYAKLLK   83 (252)
Q Consensus        34 ~v~~Nl~~~~L~E~a~~-----~~~~~Gal~v~T-------------------~~~v~----~~--N~pis~e~F~~L~~   83 (252)
                      ++|||+++++|+|+++.     .+.++|+|+|+|                   ++.+|    |+  |+++++++|++|++
T Consensus         2 ~v~~n~~~~~L~e~~~~~~g~~~~~~~g~l~~~tg~~tgRsp~dkfIv~~~~~~~~~~w~~~w~~~N~~~~~~~~~~~~~   81 (515)
T cd01919           2 HIHINDENGRLLQQMLEEYGILRLTKNGALAVTDPRDTGRSPSDKVIVTQDQRRTVPIPKTGLSQLNRWLSEEDFEKAFN   81 (515)
T ss_pred             ceEECCCHHHHHHHHHHhcCCEEECCCceEEECCCCccccCCCceEEeCCCccccCccccccccccCCCCCHHHHHHHHH
Confidence            58999999999999864     456999999999                   22476    33  99999999999999


Q ss_pred             HHHHHH-cCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCC
Q 025479           84 QVTAHL-SSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVG  161 (252)
Q Consensus        84 ~v~~yL-~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f-~p~fTIi~aP~f~adp~~~~G  161 (252)
                      ++.+|+ ++ +++||+|+++|+||++|+++|+|||+|||+||+||||+||+.+|++.| +|+|||||+|+|++||...+|
T Consensus        82 ~~~~~~m~g-r~myV~d~~~G~~~~~~~~~r~it~~ay~~lf~~~m~~~p~~~~l~~~~~p~~~ii~~~g~~~~~~~w~g  160 (515)
T cd01919          82 ARFPGLMKG-RTLFVVDFFMGPGSPLRLIVRELTDSPYVAAFMRIMTIMPTDEELAAFGDPDVKCLNSVGCPLPLQKWPG  160 (515)
T ss_pred             HHHHHHhcC-CCEEEEeceECCCCcccccEEEEEChHHHHHHHHHhccCCChHHHhhCCCCCEEEEeCCCCcCCccCCCC
Confidence            999999 76 679999999999999999999999999999999999999998999999 699999999999999966469


Q ss_pred             cCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceecccCC------Cceeeeecccc
Q 025479          162 LRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLLCARC------RCNCFFSWCGT  228 (252)
Q Consensus       162 t~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpMsAni------~~alFFGLSGT  228 (252)
                      ++|   ++||++|+++|+|+|+||+  |+|||||++|++|||++|++|+|||||++      ++.+|||||||
T Consensus       161 ~~s---~~~I~~~~~~~~i~i~Gt~--Y~Ge~KK~~l~~~~~l~~~~g~L~~H~s~~~~~~g~~~~~~GlSGt  228 (515)
T cd01919         161 LPS---LTLVAHNPDRREQIIFGTG--YGGEMKKGFLRMMSRLAPEEGWLAMHMSANVGTNGDVLVFFGLSGT  228 (515)
T ss_pred             CCC---CcEEEEEcccCEEEEecCc--cccchHHHHHHHHHHHHHhcCceeeeceeeccCCCCEEEEEecccC
Confidence            998   7999999999999999999  79999999999999999999999995544      37899999996

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	2e-04
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	6e-04
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	7e-04

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1 Length = 524

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 14/51 (27%), Positives = 23/51 (45%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVL 123
           +S+  +A++ K     L +  ++FV D   G       KVRV +  P   L
Sbjct: 68  LSEESFARVRKIAKEFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHAL 118

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A* Length = 529

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 13/47 (27%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSP 119
            +   +  L ++V  +LS   +++VQD   G+       VRV+++SP
Sbjct: 78  FAPEAFEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESP 123

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A Length = 532

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 1/47 (2%)

Query: 73  ISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSP 119
           +++  +A+L       LS+   ++V D   G++     K+R + +  
Sbjct: 90  VTEEAWAQLKALAGKELSN-KPLYVVDLFCGANENTRLKIRFVMEVA 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
1ytm_A	532	Phosphoenolpyruvate carboxykinase [ATP], phosphoen	100.0
2olr_A	540	Phosphoenolpyruvate carboxykinase; carbon dioxide,	100.0
1ii2_A	524	Phosphoenolpyruvate carboxykinase; phosphate bindi	100.0
1j3b_A	529	ATP-dependent phosphoenolpyruvate carboxykinase; a	100.0

>1ytm_A Phosphoenolpyruvate carboxykinase [ATP], phosphoenolpyruvate; domain closure, nucleotide binding; HET: ATP; 2.20A {Anaerobiospirillum succiniciproducens} PDB: 1yvy_A

Probab=100.00  E-value=3.8e-56  Score=435.28  Aligned_cols=202  Identities=14%  Similarity=0.195  Sum_probs=188.0

Q ss_pred             hhhhhhhhCCCCcCcceeecCChHHHHHHHhh---------ccccCCceEEEe-------------------eccccC--
Q 025479           19 GLNWALAGRGVVVNDKAFQNLTTSELQQKGAT---------IAESLSGLPVYV-------------------RGNLLG--   68 (252)
Q Consensus        19 ~~n~~L~~~gi~~~~~v~~Nl~~~~L~E~a~~---------~~~~~Gal~v~T-------------------~~~v~~--   68 (252)
                      .|.+.|+.+||++..++|||+++++|+|+|++         .++++|+++++|                   ++ |||  
T Consensus         2 ~~~~~~~~~g~~~~~~i~~n~~~~~L~e~a~~~~~~~~~eg~l~~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~-i~w~~   80 (532)
T 1ytm_A            2 SLSESLAKYGITGATNIVHNPSHEELFAAETQASLEGFEKGTVTEMGAVNVMTGVYTGRSPKDKFIVKNEASKE-IWWTS   80 (532)
T ss_dssp             CHHHHHHHHTCCCCSEEEESCCHHHHHHHHTCTTCCGGGCEEECTTSSEEECCTTCCSBCGGGEEEECSGGGTT-SCCCC
T ss_pred             ccccchHhcCCCCCCeEEECCCHHHHHHHHHhhccCCcccceecCCCCEEEcCCCcccCCCCceEEeCCCCccc-ccccc
Confidence            35688999999998899999999999999854         466899999998                   22 777  


Q ss_pred             ---C--CCCCCHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCC
Q 025479           69 ---G--SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCP  143 (252)
Q Consensus        69 ---~--N~pis~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~  143 (252)
                         +  |+|+++|+|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++||||||..+|+++|+||
T Consensus        81 ~~~~~~n~~~~~e~f~~l~~~~~~~l~~-k~l~v~d~~~G~d~~~~~~vr~it~~a~~~lf~~nLf~rp~~ee~~~f~pd  159 (532)
T 1ytm_A           81 DEFKNDNKPVTEEAWAQLKALAGKELSN-KPLYVVDLFCGANENTRLKIRFVMEVAWQAHFVTNMFIRPTEEELKGFEPD  159 (532)
T ss_dssp             SSSCCSCEEECHHHHHHHHHHHHHHHSS-SEEEEEEEEESSCTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHTTCCCS
T ss_pred             cccCcccCCCCHHHHHHHHHHHHHHHcC-CCEEEEEEEeeCChhhceeEEEEeCHHHHHHHHHHhccCCChHHhccCCCC
Confidence               5  8999999999999999999999 589999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEcCC-CCCCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC---
Q 025479          144 LTVYVTTS-ISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC---  217 (252)
Q Consensus       144 fTIi~aP~-f~adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni---  217 (252)
                      ||||++|+ |+++| ..+|++|   +++|++|+++|+++||||+  |+|||||++||+|||+||++|+|||  |||+   
T Consensus       160 ~~i~~~p~~f~~~~-~~~G~~s---~~~v~~n~~~~~~~I~gt~--Y~GemKK~~ftl~n~~~~~~G~L~~H~sanv~~~  233 (532)
T 1ytm_A          160 FVVLNASKAKVENF-KELGLNS---ETAVVFNLAEKMQIILNTW--YGGEMKKGMFSMMNFYLPLQGIAAMHCSANTDLE  233 (532)
T ss_dssp             EEEEEETTCCCTTT-TTTTCSS---SCEEEEETTTTEEEEESCC--CTTHHHHHHHHHHHHHTGGGTCEEEEEEEEEETT
T ss_pred             EEEEECCccccCCc-ccCCCCC---ceEEEEECCCCEEEEeCCc--cCchhhHhHHHHHHHHHHHCCcEeecCeeeeCCC
Confidence            99999999 99998 4459998   8999999999999999999  7999999999999999999999999  6776   


Q ss_pred             --Cceeeeecccc
Q 025479          218 --RCNCFFSWCGT  228 (252)
Q Consensus       218 --~~alFFGLSGT  228 (252)
                        ++++|||||||
T Consensus       234 g~~~~~ffGlSGt  246 (532)
T 1ytm_A          234 GKNTAIFFGLSGT  246 (532)
T ss_dssp             SCSEEEEECCTTS
T ss_pred             CCeEEEEEecCCC
Confidence              48999999997

>2olr_A Phosphoenolpyruvate carboxykinase; carbon dioxide, lyase; HET: ATP; 1.60A {Escherichia coli K12} SCOP: c.91.1.1 c.109.1.1 PDB: 1k3c_A* 1k3d_A* 1aq2_A* 2olq_A* 1os1_A* 2pxz_X* 1ayl_A* 2py7_X* 1oen_A 1ylh_A* 1ygg_A*

Probab=100.00  E-value=4e-55  Score=428.14  Aligned_cols=197  Identities=17%  Similarity=0.231  Sum_probs=183.3

Q ss_pred             hhhhhhCCCCcCcceeecCChHHHHHHHh---------hccccCCceEEEe-------------------eccccC-C--
Q 025479           21 NWALAGRGVVVNDKAFQNLTTSELQQKGA---------TIAESLSGLPVYV-------------------RGNLLG-G--   69 (252)
Q Consensus        21 n~~L~~~gi~~~~~v~~Nl~~~~L~E~a~---------~~~~~~Gal~v~T-------------------~~~v~~-~--   69 (252)
                      ...|+.+||++..++|||+++++|+|+|+         +.++++|+++++|                   ++.||| +  
T Consensus         9 ~~~~~~~gi~~~~~v~~n~~~~~L~e~al~~~~~~~eeg~l~~~Gal~~~tg~~tgRsp~dk~Iv~~~~~~~~i~w~~~~   88 (540)
T 2olr_A            9 PQELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKG   88 (540)
T ss_dssp             HHHHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEEECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSS
T ss_pred             ccchhhcCCCCCCeEEeCCCHHHHHHHHHhcCCCccccceecCCCCEEEcCCCcccCCCCceEEeCCCCCcccccccccc
Confidence            45789999999889999999999999985         4577899999988                   124886 3  


Q ss_pred             -----CCCCCHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCe
Q 025479           70 -----SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPL  144 (252)
Q Consensus        70 -----N~pis~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~f  144 (252)
                           |+|+++++|+.|+++|.+||++ +++||+|+++|+||+||++||+|||+|||+||++|||+||..+|+++|+|||
T Consensus        89 ~~~~~N~~~~~e~f~~l~~~~~~~l~~-k~lyv~d~~~G~d~~~~~~vr~ite~a~~alf~~nLf~rp~~ee~~~~~pd~  167 (540)
T 2olr_A           89 KGKNDNKPLSPETWQHLKGLVTRQLSG-KRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDF  167 (540)
T ss_dssp             SSCCSCEEECHHHHHHHHHHHHHHHTT-SCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTCCCSE
T ss_pred             ccccccCCCCHHHHHHHHHHHHHHHcC-CCEEEEeeeeeCChhhceeEEEEeCHHHHHHHHHHhhcCCChHHhcCCCCCE
Confidence                 7899999999999999999999 6899999999999999999999999999999999999999999999999999


Q ss_pred             EEEEc-----CCCCCCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC
Q 025479          145 TVYVT-----TSISPGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC  217 (252)
Q Consensus       145 TIi~a-----P~f~adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni  217 (252)
                      |||++     |+|+++     |++|   +++|++|+++|+++||||+  |+|||||++||+|||+||++|+|||  |||+
T Consensus       168 ~i~~~~~~~~p~f~~~-----G~~s---~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~l~~~G~L~mH~sanv  237 (540)
T 2olr_A          168 IVMNGAKCTNPQWKEQ-----GLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKGIASMHCSANV  237 (540)
T ss_dssp             EEEEETTCCCTTTTTT-----TCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHTGGGTCEEECEEEEE
T ss_pred             EEEEeccCCCCCcccC-----CccC---ccEEEEEccCCeEEEeCCc--CchHhhhhHHHHhHHHHHHCCcEeecceeee
Confidence            99999     999987     9998   7999999999999999999  7999999999999999999999999  6776


Q ss_pred             ----Cceeeeecccc
Q 025479          218 ----RCNCFFSWCGT  228 (252)
Q Consensus       218 ----~~alFFGLSGT  228 (252)
                          ++++|||||||
T Consensus       238 g~~g~~~lffGlSGt  252 (540)
T 2olr_A          238 GEKGDVAVFFGLSGT  252 (540)
T ss_dssp             CTTSCEEEEECSTTS
T ss_pred             CCCCCEEEEEccCCC
Confidence                48999999998

>1ii2_A Phosphoenolpyruvate carboxykinase; phosphate binding loop, lyase; 2.00A {Trypanosoma cruzi} SCOP: c.91.1.1 c.109.1.1

Probab=100.00  E-value=3.2e-55  Score=428.16  Aligned_cols=190  Identities=20%  Similarity=0.267  Sum_probs=176.4

Q ss_pred             cceeecCChHHHHHHHh----h-ccccCCceEEEe-------------------eccccCC--CCCCCHHHHHHHHHHHH
Q 025479           33 DKAFQNLTTSELQQKGA----T-IAESLSGLPVYV-------------------RGNLLGG--SSDISKAQYAKLLKQVT   86 (252)
Q Consensus        33 ~~v~~Nl~~~~L~E~a~----~-~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~F~~L~~~v~   86 (252)
                      .++|||+++++|+|+|+    + .++++|+++++|                   ++.|||+  |+++++++|+.|+++|.
T Consensus         2 ~~v~~n~~~~eL~e~A~~~~eg~~lt~~Gal~~~tg~~tgRsp~dk~iv~~~~~~~~i~w~~~n~~~~~e~f~~l~~~~~   81 (524)
T 1ii2_A            2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK   81 (524)
T ss_dssp             CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred             CeeEeCCCHHHHHHHHHHhCCCcEEcCCCCEEEecCcccCCCcCceEEeCCCCCccccccCcCcccCCHHHHHHHHHHHH
Confidence            36899999999999996    5 678899999998                   2248876  89999999999999999


Q ss_pred             HHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCCcCCC
Q 025479           87 AHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVGLRAQ  165 (252)
Q Consensus        87 ~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f-~p~fTIi~aP~f~adp~~~~Gt~Se  165 (252)
                      +||++++++||+|+++|+||+||++|||||+.|||+||++|||+||..+|+++| +||||||++|+|+++| ..+|++| 
T Consensus        82 ~~l~~k~~l~v~d~~~G~d~~~~~~vrvit~~a~~~lf~~nl~~rp~~~e~~~fg~pd~~i~~~p~f~~~~-~~~G~~s-  159 (524)
T 1ii2_A           82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADP-SIPGLTS-  159 (524)
T ss_dssp             HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCT-TSTTCCS-
T ss_pred             HHHcCCCcEEEEeeeeecChhhcccEEEEECHHHHHHHHHHhhccCCHHHhcccCCCCEEEEeCCCccCCc-ccCCcCc-
Confidence            999995349999999999999999999999999999999999999998899999 9999999999999998 4559998 


Q ss_pred             CCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeecccc
Q 025479          166 GDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWCGT  228 (252)
Q Consensus       166 ~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLSGT  228 (252)
                        +++|++|+++|+++|+||+  |+|||||++||+|||+||++|+|||  |||+    ++++|||||||
T Consensus       160 --~~~v~~~~~~~~~~I~Gt~--Y~GemKK~~ftl~n~~~~~~g~L~~H~san~g~~g~~~~ffGlSGt  224 (524)
T 1ii2_A          160 --TTCVALNFKTREQVILGTE--YAGEMKKGILTVMFELMPQMNHLCMHASANVGKQGDVTVFFGLSGT  224 (524)
T ss_dssp             --SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHHHHTTCEEESEEEEECTTCCEEEEECCTTS
T ss_pred             --ccEEEEECCCCeEEEECCc--chHHHHHHHHHHHHHHHHHCCcEeecceeeeCCCCCEEEEEccCCc
Confidence              8999999999999999999  7999999999999999999999999  4776    48999999998

>1j3b_A ATP-dependent phosphoenolpyruvate carboxykinase; adenosine triphosphate, T thermophilus; 2.00A {Thermus thermophilus} SCOP: c.91.1.1 c.109.1.1 PDB: 1xkv_A* 2pc9_A*

Probab=100.00  E-value=7.8e-51  Score=397.55  Aligned_cols=199  Identities=20%  Similarity=0.284  Sum_probs=179.7

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHHHh----hccccCCceEEEe-------------------eccccCC--CCCCCHHH
Q 025479           23 ALAGRGVVVNDKAFQNLTTSELQQKGA----TIAESLSGLPVYV-------------------RGNLLGG--SSDISKAQ   77 (252)
Q Consensus        23 ~L~~~gi~~~~~v~~Nl~~~~L~E~a~----~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~   77 (252)
                      .|+++||++..++|||++.++|+|+|+    +...++|++++.|                   ++.+||+  |++++++.
T Consensus         3 ~~~~~~l~~~~~v~~n~~~~~l~e~a~~~g~g~~~~~g~~~~~tg~~tgRsp~~~fIv~~~~~~~~~~w~~~n~~~~~e~   82 (529)
T 1j3b_A            3 RLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA   82 (529)
T ss_dssp             CCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCEECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHH
T ss_pred             chhhccCCCCCeEEECCChHHHHHHHHHcCCCEECCCCCEEeCCCCcccCCCCceEEeCCCCcCCccccccccCcCCHHH
Confidence            578899998889999999999999985    4566899999998                   1248875  89999999


Q ss_pred             HHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCC----ccccCCCCCCeEEEEcCCCC
Q 025479           78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTP----SRAVSHDSCPLTVYVTTSIS  153 (252)
Q Consensus        78 F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~----~~el~~f~p~fTIi~aP~f~  153 (252)
                      |+.|++++.+||++ +++||+|+++|+|+++++++|+||++|||+||++||||||.    .+|+++|+|+|+||++|+|+
T Consensus        83 f~~l~~~~~~~m~g-r~lyV~~~~~G~~~~~~~~~~~itd~a~~~lf~~~m~~rp~~~~~~~el~~~~pd~~i~~~p~f~  161 (529)
T 1j3b_A           83 FEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQ  161 (529)
T ss_dssp             HHHHHHHHHHHHHT-SCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCC
T ss_pred             HHHHHHHHHHHhcC-CcEEEEEEeeeCCcccCeeEEEEcChHHHHHHHHHHhcccCcccchhhhccCCCCEEEEeCCCcc
Confidence            99999999999999 58999999999999999999999999999999999999998    78999999999999999999


Q ss_pred             CCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCCceec--ccCC----Cceeeeeccc
Q 025479          154 PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARGGLLL--CARC----RCNCFFSWCG  227 (252)
Q Consensus       154 adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~gVLpM--sAni----~~alFFGLSG  227 (252)
                      ++| ..+||+|   +++|++|+++|+|+|+||+  |+|||||++|++|||++|++|+|||  |||+    ++++||||||
T Consensus       162 ~~~-~~~G~~s---~~~i~~~~~~~~i~i~Gt~--Y~Ge~KK~~l~i~~~~~~~~G~L~~H~sa~~~~~g~~~~ffGlSG  235 (529)
T 1j3b_A          162 AVP-ERDGTRS---EVFVGISFQRRLVLIVGTK--YAGEIKKSIFTVMNYLMPKRGVFPMHASANVGKEGDVAVFFGLSG  235 (529)
T ss_dssp             CCH-HHHCCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHGGGGTCEEEECEEEECTTCCEEEEEECTT
T ss_pred             cCc-ccCCCCC---ceEEEEECccCEEEEeCCc--cCcchHHHHHHHHHHHHHHCCeEeccceeeeCCCCcEEEEEcccc
Confidence            997 5559998   7999999999999999999  8999999999999999999999999  5766    3899999999


Q ss_pred             c
Q 025479          228 T  228 (252)
Q Consensus       228 T  228 (252)
                      |
T Consensus       236 t  236 (529)
T 1j3b_A          236 T  236 (529)
T ss_dssp             S
T ss_pred             C
Confidence            9

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1j3ba2	210	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	100.0
d2olra2	222	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	100.0
d1ii2a2	199	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	100.0

>d1j3ba2 c.109.1.1 (A:2-211) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.6e-73  Score=498.37  Aligned_cols=180  Identities=19%  Similarity=0.271  Sum_probs=165.7

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHHH----hhccccCCceEEEe-------------------eccccCC--CCCCCHHH
Q 025479           23 ALAGRGVVVNDKAFQNLTTSELQQKG----ATIAESLSGLPVYV-------------------RGNLLGG--SSDISKAQ   77 (252)
Q Consensus        23 ~L~~~gi~~~~~v~~Nl~~~~L~E~a----~~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~   77 (252)
                      .|+++||++.+++||||++++|+|+|    +|+++++|||+|.|                   ++.||||  |+||++|+
T Consensus         2 ~L~~~Gi~~~~~v~~Nl~~~~L~e~ai~~~eG~l~~~GaL~v~TG~~TGRSPkDKfiV~d~~t~d~IwWg~vN~~is~e~   81 (210)
T d1j3ba2           2 RLEALGIHPKKRVFWNTVSPVLVEHTLLRGEGLLAHHGPLVVDTTPYTGRSPKDKFVVREPEVEGEIWWGEVNQPFAPEA   81 (210)
T ss_dssp             CCGGGTCCCSSCEEESCCHHHHHHHHHHTTSCEECTTSCEEECCTTCCSCCGGGEEEECCTTTTTTSCBTTTBEEECHHH
T ss_pred             chHHcCCCCCCeEEeCCCHHHHHHHHHHcCCeEEcCCCCEEEecCCccCcCCCccEEEeecccccccccccccccccHHH
Confidence            47899999988999999999999999    57788999999999                   2349985  99999999


Q ss_pred             HHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCC----ccccCCCCCCeEEEEcCCCC
Q 025479           78 YAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTP----SRAVSHDSCPLTVYVTTSIS  153 (252)
Q Consensus        78 F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~----~~el~~f~p~fTIi~aP~f~  153 (252)
                      |+.|+++|++||++ ++|||+|+||||||+||++||||||+||||||+|||||||+    ++|+.+|+|||||||||+|+
T Consensus        82 F~~L~~~~~~yl~~-k~lyv~D~~~Gad~~~r~~vRvite~AwhalF~~nMFirP~~~~~~~el~~f~Pd~tIi~ap~f~  160 (210)
T d1j3ba2          82 FEALYQRVVQYLSE-RDLYVQDLYAGADRRYRLAVRVVTESPWHALFARNMFILPRRFGNDDEVEAFVPGFTVVHAPYFQ  160 (210)
T ss_dssp             HHHHHHHHHHHHHT-SCEEEEEEEECSSTTTCEEEEEEESCHHHHHHHHHHSBCGGGGC------CCCCSEEEEEETTCC
T ss_pred             HHHHHHHHHHHHcC-CCcEEEEEEEecCcccccceEEeehhhhHHHHhhheeccccccCchhhHhccCCCcEEEecCccc
Confidence            99999999999999 68999999999999999999999999999999999999996    48999999999999999999


Q ss_pred             CCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCC
Q 025479          154 PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARG  209 (252)
Q Consensus       154 adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~g  209 (252)
                      +|| +.|||||   |+||+|||++|+||||||+  |||||||||||||||+||+||
T Consensus       161 ~~p-~~~g~~S---e~~v~inf~~k~ilI~GT~--YaGEiKKsiFsvmNylLP~~G  210 (210)
T d1j3ba2         161 AVP-ERDGTRS---EVFVGISFQRRLVLIVGTK--YAGEIKKSIFTVMNYLMPKRG  210 (210)
T ss_dssp             CCH-HHHCCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHGGGGT
T ss_pred             CCc-cccCCCC---CCEEEEEcccCEEEEEcCc--ccchhHHHHHHHHHhhcCCCC
Confidence            999 4559999   8999999999999999999  899999999999999999997

>d2olra2 c.109.1.1 (A:6-227) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.9e-71  Score=487.67  Aligned_cols=180  Identities=17%  Similarity=0.236  Sum_probs=169.7

Q ss_pred             hhhhCCCCcCcceeecCChHHHHHHHh---------hccccCCceEEEe-------------------eccccCC-----
Q 025479           23 ALAGRGVVVNDKAFQNLTTSELQQKGA---------TIAESLSGLPVYV-------------------RGNLLGG-----   69 (252)
Q Consensus        23 ~L~~~gi~~~~~v~~Nl~~~~L~E~a~---------~~~~~~Gal~v~T-------------------~~~v~~~-----   69 (252)
                      .|+++||++.+++||||++++|+|+|+         |.++++|||+|.|                   ++.||||     
T Consensus         6 ~L~~~Gi~~~~~i~~Nl~~~~L~e~al~~~~~~~~eG~ls~~GaL~v~TG~~TGRSPkDKfIV~d~~t~d~IwWG~v~~~   85 (222)
T d2olra2           6 ELEAYGISDVHDIVYNPSYDLLYQEELDPSLTGYERGVLTNLGAVAVDTGIFTGRSPKDKYIVRDDTTRDTFWWADKGKG   85 (222)
T ss_dssp             HHHHTTCCCCCCEEESCCHHHHHHHHHCTTCCGGGCEEECTTSCEEECCCSCSSCCGGGEEEECSTTTTTTSCCTTSSSS
T ss_pred             HHHHhCCCCCCeEEeCCCHHHHHHHHHHhcccccCceEEcCCCcEEEeCCCCCCCCCCceEEEEecccccceeecccccc
Confidence            689999999889999999999999984         5788999999999                   2359984     


Q ss_pred             ---CCCCCHHHHHHHHHHHHHHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCCCCCeEE
Q 025479           70 ---SSDISKAQYAKLLKQVTAHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHDSCPLTV  146 (252)
Q Consensus        70 ---N~pis~e~F~~L~~~v~~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f~p~fTI  146 (252)
                         |+||++++|+.|+++|++||++ +++||+|+||||||+||++||||||+||||||+|||||||+++|+++|+|||||
T Consensus        86 ~~~N~p~s~e~F~~L~~~~~~yl~~-k~lyV~D~~aGad~~~rl~VRvite~AwhaLF~~nMfirp~~~el~~f~pd~ti  164 (222)
T d2olra2          86 KNDNKPLSPETWQHLKGLVTRQLSG-KRLFVVDAFCGANPDTRLSVRFITEVAWQAHFVKNMFIRPSDEELAGFKPDFIV  164 (222)
T ss_dssp             CCSCEEECHHHHHHHHHHHHHHHTT-SCEEEEEEEESSSTTTCEEEEEEESCHHHHHHHHHHSBCCCHHHHHTCCCSEEE
T ss_pred             ccCCccCCHHHHHHHHHHHHHHhcc-CCceEEEEEEecCccceeeeeeehhhhHHHHHHHHHhCCCcchhhccCCchheE
Confidence               8999999999999999999999 689999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCC-CCCCccCCcCCCCCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCC
Q 025479          147 YVTTSIS-PGVVNAVGLRAQGDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARG  209 (252)
Q Consensus       147 i~aP~f~-adp~~~~Gt~Se~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~g  209 (252)
                      |++|+|. +|| .+|||||   |+||+|||++|+||||||+  |||||||||||||||+||+||
T Consensus       165 i~~~~~~~~~~-~~~g~~S---e~~v~inf~~k~ilI~GT~--YaGEiKKsiFsvmNylLP~~G  222 (222)
T d2olra2         165 MNGAKCTNPQW-KEQGLNS---ENFVAFNLTERMQLIGGTW--YGGEMKKGMFSMMNYLLPLKG  222 (222)
T ss_dssp             EEETTCCCTTT-TTTTCSS---SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHTGGGT
T ss_pred             ecccccccCcc-ccCCCCc---CcEEEEEcccCEEEEEcCc--ccchhhHHHHHHHHhhcCCCC
Confidence            9999985 676 6669999   8999999999999999999  899999999999999999997

>d1ii2a2 c.109.1.1 (A:2-200) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase N-terminal domain
superfamily: PEP carboxykinase N-terminal domain
family: PEP carboxykinase N-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=100.00  E-value=4e-69  Score=469.26  Aligned_cols=171  Identities=19%  Similarity=0.241  Sum_probs=160.2

Q ss_pred             cceeecCChHHHHHHHh-----hccccCCceEEEe-------------------eccccCC--CCCCCHHHHHHHHHHHH
Q 025479           33 DKAFQNLTTSELQQKGA-----TIAESLSGLPVYV-------------------RGNLLGG--SSDISKAQYAKLLKQVT   86 (252)
Q Consensus        33 ~~v~~Nl~~~~L~E~a~-----~~~~~~Gal~v~T-------------------~~~v~~~--N~pis~e~F~~L~~~v~   86 (252)
                      +++||||++++|+|+|+     |+++++|||+|.|                   ++.||||  |+||++++|+.|+++|.
T Consensus         2 ~~v~~NL~~~~L~e~ai~~~~eg~ls~~GaL~v~TG~~TGRSPkDKfIV~d~~t~~~i~Wg~~N~~~~~e~F~~L~~~v~   81 (199)
T d1ii2a2           2 PTIHRNLLSPELVQWALKIEKDSRLTARGALAVMSYAKTGRSPLDKRIVDTDDVRENVDWGKVNMKLSEESFARVRKIAK   81 (199)
T ss_dssp             CEEEESCCHHHHHHHHHHHCTTCEECTTSCEEECCTTCSSBCGGGEEEECCHHHHTTSCBTTTBCEECHHHHHHHHHHHH
T ss_pred             CeeEcCCCHHHHHHHHHhhCCCcEEcCCCCEEEecCCccCCCCCceEEEccCCccccceeecCCccCCHHHHHHHHHHHH
Confidence            47999999999999985     4578999999999                   2358875  99999999999999999


Q ss_pred             HHHcCCCceEEEeeeecCCcCCcceEEEEcchhhHHHhhhhcCCCCCccccCCC-CCCeEEEEcCCCCCCCCccCCcCCC
Q 025479           87 AHLSSIANVFVQDGAVGSSSECDAKVRVISDSPSAVLKLSSILWKTPSRAVSHD-SCPLTVYVTTSISPGVVNAVGLRAQ  165 (252)
Q Consensus        87 ~yL~~~~~LfV~D~~aGAd~~~rl~VRvITe~AwhaLF~~nmfirP~~~el~~f-~p~fTIi~aP~f~adp~~~~Gt~Se  165 (252)
                      +||+++++|||+|++|||||+||++||||||+|||+||+|||||||+++|+++| +|||||++||+|++|| ++||||| 
T Consensus        82 ~yl~~~~~lyv~D~~~Gad~~~~~~VRvite~AWh~lF~~nMFirP~~~e~~~~~~pd~tI~~ap~~~~dp-~~~g~~S-  159 (199)
T d1ii2a2          82 EFLDTREHLFVVDCFAGHDERYRLKVRVFTTRPYHALFMRDMLIVPTPEELATFGEPDYVIYNAGECKADP-SIPGLTS-  159 (199)
T ss_dssp             HHHHTSSEEEEEEEEECSSTTTCEEEEEEESSHHHHHHHHHHSBCCCHHHHHTCCSCSEEEEEETTSCCCT-TSTTCCS-
T ss_pred             HHHhhccceEEEeEEecCCcccceeEEEeehHHHHHHHhhheecccccccccccCCCceEEecccccccCc-cccCCCC-
Confidence            999986779999999999999999999999999999999999999999999999 7999999999999998 5559999 


Q ss_pred             CCCeEEEEeccCCeEEEeccCCCcccchhhhHHHhhcccccCCC
Q 025479          166 GDNGFIAADIERSSLILCGKGFSDANGVKEALAALSGPVIIARG  209 (252)
Q Consensus       166 ~setfiiinf~~k~ilIgGT~Y~YaGEiKKsIFsvmNylLP~~g  209 (252)
                        ++||+|||++|++|||||+  |||||||||||||||+||+|+
T Consensus       160 --~~~i~in~~~k~ilI~GT~--YaGEiKKsiFsvmNy~LP~~n  199 (199)
T d1ii2a2         160 --TTCVALNFKTREQVILGTE--YAGEMKKGILTVMFELMPQMN  199 (199)
T ss_dssp             --SCEEEEETTTTEEEEESCC--CTHHHHHHHHHHHHHHHHHTT
T ss_pred             --CcEEEEEcccCEEEEEcCc--cchhhhhhHHhhhhhcccCCC
Confidence              8999999999999999999  899999999999999999885