Citrus Sinensis ID: 025488

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGGY
Secondary Structure (PSIPRED)
ccccEEcccccccccccccEEEEcccccHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEccccccccccccEEEEccccHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccccccEEEEEEEEEEEEEEcccccccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mdryqkvekpkpespineneiRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRipqlhqdtaissvsitdtwepieeglvpvemtRHVSMISITFStrelnknspgyqsphnaeqpkLQYRYQQQQqqqnqpprqgripytavnnaynaaneesygrgrgrgrgrgrgrgrsyarggygnyqeydgysnwgrgggrgrgwgyrgtgyergrggggrgyargrgrtggrsrggggy
Flexible Loop (DISEMBL)
mdryqkvekpkpespineneirittqGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKripqlhqdtaissvsitdtwEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAynaaneesygrgrgrgrgrgrgrgrsyarggygnyqeydgysnwgrgggrgrGWGYRGtgyergrggggrgyargrgrtggrsrggggy
Low Complexity Region (SEG)
MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLqyryqqqqqqqnqpprqGRIPYTavnnaynaanEESygrgrgrgrgrgrgrgrsyarggygNYQEYDGYSNWgrgggrgrgwgyrgtgyergrggggrgyargrgrtggrsrggggy
Disordered region (IsUnstruct)
********************IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITF*********************************************************************************GYGNYQEYDGYSNWGRGGGRGRGWGYRGTGY****************************
Disordered Region (DISOPRED)
**RYQKV**********ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNK*************************************************************************************************************************************
Disordered Region (DISEMBL)
**************PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQP******************QGRIPYTAVNNAYNAANEES*****************SYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERG*************************
Disordered Region (DISPRO)
**RYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPK**********************************************************GGYGNYQEYDGYSNWGRGGGRGRGWGYRG*GYERGR*G******R**GR***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGGY
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q8N5L8	163	Ribonuclease P protein su	yes	no	0.503	0.779	0.330	3e-14
Q99JH1	163	Ribonuclease P protein su	yes	no	0.468	0.723	0.333	4e-13
Q2KIR4	163	Ribonuclease P protein su	yes	no	0.503	0.779	0.316	1e-12
Q9BUL9	199	Ribonuclease P protein su	no	no	0.428	0.542	0.288	2e-09
Q5PPN2	199	Ribonuclease P protein su	no	no	0.448	0.567	0.268	5e-08
Q91WE3	199	Ribonuclease P protein su	no	no	0.448	0.567	0.268	6e-08

>sp|Q8N5L8|RP25L_HUMAN Ribonuclease P protein subunit p25-like protein OS=Homo sapiens GN=RPP25L PE=1 SV=1

 Score = 79.3 bits (194), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 69/136 (50%), Gaps = 9/136 (6%)

Query: 1   MDRYQKV-------EKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
           M+ Y+K          P P+ P +  E+R+     IRN +  A   L+   A+ +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query: 54  GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
           G+A  K V+ AEI+K+R+P LHQ T +  +   D+W P   + GL P+ + RHV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query: 112 FSTRELNKNSPGYQSP 127
            S   L+ N  GYQ P
Sbjct: 121 LSRDPLDPNECGYQPP 136

May be a component of ribonuclease P or MRP.
Homo sapiens (taxid: 9606)

>sp|Q99JH1|RP25L_MOUSE Ribonuclease P protein subunit p25-like protein OS=Mus musculus GN=Rpp25l PE=2 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/120 (33%), Positives = 63/120 (52%), Gaps = 2/120 (1%)

Query: 10  PKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKK 69
           P P+ P +  E+R+     IRN +  A   L+    + +V    G+A  K V+ AEI+K+
Sbjct: 17  PMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSTRHVVFSGSGRAAGKAVSCAEIVKR 76

Query: 70  RIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSP 127
           R+P LHQ T +  +   D+W P   + GL P+ + RHV  + +  S   L+ +  GYQ P
Sbjct: 77  RVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVLLSRDPLDPSECGYQPP 136

May be a component of ribonuclease P or MRP.

Mus musculus (taxid: 10090)

>sp|Q2KIR4|RP25L_BOVIN Ribonuclease P protein subunit p25-like protein OS=Bos taurus GN=RPP25L PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 9/136 (6%)

Query: 1   MDRYQKV-------EKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
           M+ Y+K          P P+ P +  E+R+     IRN +  A   L+   A+ +V    
Sbjct: 1   MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRAGSKIRNLLGLALERLEGGSARHVVFSGS 60

Query: 54  GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
           G+A  K V+ AEI+K+R+P L+Q T +  +   D+W P   + GL P+ +  HV  + + 
Sbjct: 61  GRAAGKAVSCAEIVKRRVPGLYQLTKLRFLQTEDSWVPTSPDTGLDPLTVRSHVPAVWVL 120

Query: 112 FSTRELNKNSPGYQSP 127
            S   L+ N  GYQ P
Sbjct: 121 LSRDPLDPNEYGYQPP 136

May be a component of ribonuclease P or MRP.

Bos taurus (taxid: 9913)

>sp|Q9BUL9|RPP25_HUMAN Ribonuclease P protein subunit p25 OS=Homo sapiens GN=RPP25 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/118 (28%), Positives = 58/118 (49%), Gaps = 10/118 (8%)

Query: 21  IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI 80
           +R+     IRN + +AT  + +   + IV    G+A  KTV  AEI+K+R+  LHQ T +
Sbjct: 38  MRVKEGSKIRNLMAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  SSVSITDTWEPIEEG----------LVPVEMTRHVSMISITFSTRELNKNSPGYQSPH 128
              S+ + W+ +  G             + + ++V  ++I  S   L+   PGYQ P+
Sbjct: 98  RYRSVREVWQSLPPGPTQGQTPGEPAASLSVLKNVPGLAILLSKDALDPRQPGYQPPN 155

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q5PPN2|RPP25_RAT Ribonuclease P protein subunit p25 OS=Rattus norvegicus GN=Rpp25 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 21  IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI 80
           +R+     IRN + +AT  + +   + IV    G+A  KTV  AEI+K+R+  LHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  SSVSITDTWEPI----------EEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNA 130
              S+ + W+ +           +    + + ++V  ++I  S   L+    GYQ P+ +
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157

Query: 131 EQP 133
             P
Sbjct: 158 PGP 160

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

>sp|Q91WE3|RPP25_MOUSE Ribonuclease P protein subunit p25 OS=Mus musculus GN=Rpp25 PE=2 SV=1

 Score = 58.2 bits (139), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 33/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)

Query: 21  IRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI 80
           +R+     IRN + +AT  + +   + IV    G+A  KTV  AEI+K+R+  LHQ T +
Sbjct: 38  MRVKEGSKIRNLLAFATASMAQPATRAIVFSGCGRATTKTVTCAEILKRRLAGLHQVTRL 97

Query: 81  SSVSITDTWEPI----------EEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNA 130
              S+ + W+ +           +    + + ++V  ++I  S   L+    GYQ P+ +
Sbjct: 98  RYRSVREVWQSLPPGPTPGQTPSDPAASLSVLKNVPSLAILLSKDALDPRQLGYQPPNLS 157

Query: 131 EQP 133
             P
Sbjct: 158 PGP 160


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.134    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 110,568,948
Number of Sequences: 539616
Number of extensions: 5639711
Number of successful extensions: 81648
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 961
Number of HSP's successfully gapped in prelim test: 955
Number of HSP's that attempted gapping in prelim test: 35331
Number of HSP's gapped (non-prelim): 19859
length of query: 252
length of database: 191,569,459
effective HSP length: 115
effective length of query: 137
effective length of database: 129,513,619
effective search space: 17743365803
effective search space used: 17743365803
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 60 (27.7 bits)

Component of ribonuclease P, a protein complex that generates mature tRNA molecules by cleaving their 5'-ends. Also a component of RNase MRP. This subunit binds to RNA.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 2

EC: 6

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
356566431	305	PREDICTED: uncharacterized protein LOC10	0.626	0.518	0.767	1e-68
357505379	364	Ribonuclease P protein subunit p25 [Medi	0.630	0.436	0.761	9e-67
359480099	243	PREDICTED: alba-like protein C9orf23 hom	0.638	0.662	0.761	1e-66
297744302	244	unnamed protein product [Vitis vinifera]	0.638	0.659	0.761	2e-66
449468624	287	PREDICTED: uncharacterized protein LOC10	0.543	0.477	0.868	3e-63
449529240	230	PREDICTED: ribonuclease P protein subuni	0.543	0.595	0.861	6e-63
6729010	485	unknown protein [Arabidopsis thaliana]	0.801	0.416	0.574	2e-61
297833478	413	predicted protein [Arabidopsis lyrata su	0.599	0.365	0.704	6e-59
255560197	254	protein with unknown function [Ricinus c	0.777	0.771	0.610	1e-58
238479682	405	Alba DNA/RNA-binding protein [Arabidopsi	0.599	0.372	0.704	2e-58

>gi|356566431|ref|XP_003551435.1| PREDICTED: uncharacterized protein LOC100804648 [Glycine max]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 132/172 (76%), Positives = 142/172 (82%), Gaps = 14/172 (8%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVE+PKPESPINENEIRITTQGAIRNYITYAT+LLQEKHA+EIVLKAMGQAI+KT
Sbjct: 1   MDRYQKVERPKPESPINENEIRITTQGAIRNYITYATSLLQEKHAREIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAIAEI+KKRIP+LHQDT ISSVSI DTWEPIEEGLVPVEMTRHVSMISIT STRELNKN
Sbjct: 61  VAIAEILKKRIPKLHQDTGISSVSIVDTWEPIEEGLVPVEMTRHVSMISITLSTRELNKN 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESY 172
           SPGYQ+P N EQPK    YQQQ  +  Q               +NA NE+ Y
Sbjct: 121 SPGYQAPSNVEQPKPHSNYQQQSIKPAQ--------------VHNAVNEDLY 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357505379|ref|XP_003622978.1| Ribonuclease P protein subunit p25 [Medicago truncatula] gi|355497993|gb|AES79196.1| Ribonuclease P protein subunit p25 [Medicago truncatula]

 Score =  259 bits (661), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 139/172 (80%), Gaps = 13/172 (7%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVEKPKPE+PINENEIRITTQGAIRNYITYAT+LLQEK AKEIVLKAMGQAI+KT
Sbjct: 1   MDRYQKVEKPKPETPINENEIRITTQGAIRNYITYATSLLQEKQAKEIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAIAEI+KKRI  LHQDTAISSVSITD WEPIEEGLVPVEMTRHVSMISIT ST ELN N
Sbjct: 61  VAIAEILKKRISPLHQDTAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSTGELNTN 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESY 172
           SPGYQ+P  AEQ K    YQQQ             P     ++YNA NE+SY
Sbjct: 121 SPGYQAPSTAEQSKPHSNYQQQ-------------PLKPAQDSYNAVNEDSY 159

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480099|ref|XP_002266289.2| PREDICTED: alba-like protein C9orf23 homolog [Vitis vinifera]

 Score =  258 bits (660), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 143/172 (83%), Gaps = 11/172 (6%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+VEKP+PES INENEIRIT QG IRNYI+YA+TLLQEK  +EIVLKAMGQAI+KT
Sbjct: 1   MDRYQRVEKPRPESTINENEIRITAQGVIRNYISYASTLLQEKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAIAEIIKKRIP+LHQDTAISSVSITD WEPIEEGLVP+EMTRHVSMISIT STRELNKN
Sbjct: 61  VAIAEIIKKRIPRLHQDTAISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSTRELNKN 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESY 172
            PGYQ+P++ EQPK QY YQ Q Q     PRQ   P       YNA NE+SY
Sbjct: 121 LPGYQAPYHVEQPKSQYHYQPQNQ-----PRQAARP------PYNAVNEDSY 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744302|emb|CBI37272.3| unnamed protein product [Vitis vinifera]

 Score =  258 bits (658), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 143/172 (83%), Gaps = 11/172 (6%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+VEKP+PES INENEIRIT QG IRNYI+YA+TLLQEK  +EIVLKAMGQAI+KT
Sbjct: 1   MDRYQRVEKPRPESTINENEIRITAQGVIRNYISYASTLLQEKRVREIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAIAEIIKKRIP+LHQDTAISSVSITD WEPIEEGLVP+EMTRHVSMISIT STRELNKN
Sbjct: 61  VAIAEIIKKRIPRLHQDTAISSVSITDVWEPIEEGLVPLEMTRHVSMISITLSTRELNKN 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESY 172
            PGYQ+P++ EQPK QY YQ Q Q     PRQ   P       YNA NE+SY
Sbjct: 121 LPGYQAPYHVEQPKSQYHYQPQNQ-----PRQAARP------PYNAVNEDSY 161

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449468624|ref|XP_004152021.1| PREDICTED: uncharacterized protein LOC101208913 [Cucumis sativus] gi|449531416|ref|XP_004172682.1| PREDICTED: uncharacterized protein LOC101224898 [Cucumis sativus]

 Score =  247 bits (630), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 119/137 (86%), Positives = 127/137 (92%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVEKPKPESPINENEIRIT+QGAIRNYITYA+TLLQEK  +EIVLKAMGQAI+K 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKRVREIVLKAMGQAISKA 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAIAEI+KKRI +LHQ+TAISSVSITD WEPIEEGLVPVEMTRHVSMISIT S RELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPVEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQSPHNAEQPKLQY 137
           SPGYQ+PH  EQPK QY
Sbjct: 121 SPGYQAPHFVEQPKQQY 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449529240|ref|XP_004171609.1| PREDICTED: ribonuclease P protein subunit p25-like protein-like, partial [Cucumis sativus]

 Score =  246 bits (628), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 118/137 (86%), Positives = 127/137 (92%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQKVEKPKPESPINENEIRIT+QGAIRNYITYA+TLLQEK  +EIVLKAMGQAI+K 
Sbjct: 1   MDRYQKVEKPKPESPINENEIRITSQGAIRNYITYASTLLQEKCVREIVLKAMGQAISKA 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAIAEI+KKRI +LHQ+TAISSVSITD WEPIEEGLVP+EMTRHVSMISIT S RELNKN
Sbjct: 61  VAIAEILKKRISRLHQETAISSVSITDVWEPIEEGLVPMEMTRHVSMISITLSNRELNKN 120

Query: 121 SPGYQSPHNAEQPKLQY 137
           SPGYQ+PH  EQPK QY
Sbjct: 121 SPGYQAPHFVEQPKQQY 137

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6729010|gb|AAF27007.1|AC016827_18 unknown protein [Arabidopsis thaliana]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 124/216 (57%), Positives = 148/216 (68%), Gaps = 14/216 (6%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+V KPKPESPINENEIRIT++G IRNYI+YAT+LLQEK  K+IVLKAMGQAI+KT
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAI+EI+K +IP LHQD AISS+SITD WEP EEGL PVE+TRHVSMISIT S  ELNK+
Sbjct: 61  VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGR 180
           SPGYQ+P  ++Q K QY+ QQ         RQ R+PY    NAY   N  ++        
Sbjct: 121 SPGYQAPAQSDQSKPQYQPQQ--------GRQARLPY----NAYGEGNALNFLDDLNLSM 168

Query: 181 GRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRG 216
               G G   A G  G  +E D  +  G    + +G
Sbjct: 169 LIRMGEGEVVAEGEAG--EEVDMETTKGVMKEKTKG 202

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833478|ref|XP_002884621.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330461|gb|EFH60880.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  233 bits (594), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 112/159 (70%), Positives = 130/159 (81%), Gaps = 8/159 (5%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRY++V KPKPESPINENEIRIT++G IRNYI+YATTLLQEK+ K+IVLKAMGQAI+KT
Sbjct: 1   MDRYERVVKPKPESPINENEIRITSKGLIRNYISYATTLLQEKNVKDIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAI+EI+K +IP LHQD AISS+SITD WEP EEGL PVE+TRHVSMISIT S  ELNK+
Sbjct: 61  VAISEILKNKIPGLHQDIAISSMSITDVWEPTEEGLFPVELTRHVSMISITLSLTELNKD 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTA 159
           SPGYQ+P   +Q K QY+ QQ         RQ R+PY A
Sbjct: 121 SPGYQAPAQTDQSKPQYQPQQG--------RQARLPYNA 151

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560197|ref|XP_002521116.1| protein with unknown function [Ricinus communis] gi|223539685|gb|EEF41267.1| protein with unknown function [Ricinus communis]

 Score =  232 bits (591), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 127/208 (61%), Positives = 148/208 (71%), Gaps = 12/208 (5%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRY +VEKPKPESPINENEIRIT+ G +RNYI+YAT+LLQEKHAKEIVLKAMGQAI+KT
Sbjct: 1   MDRYTRVEKPKPESPINENEIRITSGGPVRNYISYATSLLQEKHAKEIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           V+IAE IK++ P+L+QDT ISSVSITD WEPIEEGL+PVE TR VSMI+IT S RELN N
Sbjct: 61  VSIAEGIKRKNPRLYQDTVISSVSITDVWEPIEEGLLPVEQTRQVSMITITLSFRELNIN 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGR 180
           SPGYQ+P + EQPK QY+ Q         PRQ R PY A  +  ++              
Sbjct: 121 SPGYQAPQSVEQPKEQYQPQ---------PRQSRGPYNAGRD--DSYGRGLGRGRGRGRG 169

Query: 181 GRGRGRGRSYARGGY-GNYQEYDGYSNW 207
                 G    +G Y GNYQ+  GYSNW
Sbjct: 170 FGRGRYGYGNYQGNYQGNYQDNAGYSNW 197

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238479682|ref|NP_187359.2| Alba DNA/RNA-binding protein [Arabidopsis thaliana] gi|332640970|gb|AEE74491.1| Alba DNA/RNA-binding protein [Arabidopsis thaliana]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 112/159 (70%), Positives = 130/159 (81%), Gaps = 8/159 (5%)

Query: 1   MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
           MDRYQ+V KPKPESPINENEIRIT++G IRNYI+YAT+LLQEK  K+IVLKAMGQAI+KT
Sbjct: 1   MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query: 61  VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
           VAI+EI+K +IP LHQD AISS+SITD WEP EEGL PVE+TRHVSMISIT S  ELNK+
Sbjct: 61  VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTA 159
           SPGYQ+P  ++Q K QY+ QQ         RQ R+PY A
Sbjct: 121 SPGYQAPAQSDQSKPQYQPQQG--------RQARLPYNA 151

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2077547	405	AT3G07030 [Arabidopsis thalian	0.531	0.330	0.761	5.1e-51
TAIR|locus:2204400	350	AT1G76010 [Arabidopsis thalian	0.503	0.362	0.677	1.5e-42
TAIR|locus:2198551	315	AT1G20220 [Arabidopsis thalian	0.531	0.425	0.626	1.2e-40
ZFIN|ZDB-GENE-040718-275	224	rpp25l "ribonuclease P/MRP 25	0.325	0.366	0.392	7.7e-17
UNIPROTKB|E2R227	163	LOC486757 "Uncharacterized pro	0.503	0.779	0.352	7.7e-16
UNIPROTKB|E2RC74	163	C11H9orf23 "Uncharacterized pr	0.503	0.779	0.352	7.7e-16
DICTYBASE|DDB_G0281409	369	drpp25 "RNase MRP protein subu	0.496	0.338	0.372	1.1e-15
UNIPROTKB|E1C3A2	170	CZH9orf23 "Uncharacterized pro	0.503	0.747	0.330	2.6e-15
UNIPROTKB|Q8N5L8	163	RPP25L "Ribonuclease P protein	0.503	0.779	0.345	2.6e-15
UNIPROTKB|F1SEB9	163	RPP25L "Uncharacterized protei	0.503	0.779	0.345	2.6e-15

TAIR|locus:2077547 AT3G07030 [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 102/134 (76%), Positives = 118/134 (88%)

Query:     1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
             MDRYQ+V KPKPESPINENEIRIT++G IRNYI+YAT+LLQEK  K+IVLKAMGQAI+KT
Sbjct:     1 MDRYQRVAKPKPESPINENEIRITSKGLIRNYISYATSLLQEKSVKDIVLKAMGQAISKT 60

Query:    61 VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
             VAI+EI+K +IP LHQD AISS+SITD WEP EEGL PVE+TRHVSMISIT S  ELNK+
Sbjct:    61 VAISEILKNKIPGLHQDIAISSISITDVWEPTEEGLFPVELTRHVSMISITLSLSELNKD 120

Query:   121 SPGYQSPHNAEQPK 134
             SPGYQ+P  ++Q K
Sbjct:   121 SPGYQAPAQSDQSK 134

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2204400 AT1G76010 [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 86/127 (67%), Positives = 104/127 (81%)

Query:     1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
             MD+YQ+V KPK ++PI+ NEIRIT+QG  RNYITYA TLLQ+K + E+V KAMG+AINKT
Sbjct:     1 MDKYQRVVKPKADTPIDANEIRITSQGRARNYITYAMTLLQDKGSTEVVFKAMGRAINKT 60

Query:    61 VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
             V I E+IK+RIP LHQ+T+I S  ITDTWEP EEGL+P+E TRHVSMI+IT S  ELN +
Sbjct:    61 VTIVELIKRRIPDLHQNTSIGSTDITDTWEPTEEGLLPLETTRHVSMITITLSKIELNTS 120

Query:   121 SPGYQSP 127
             S GYQ P
Sbjct:   121 SVGYQCP 127

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2198551 AT1G20220 [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
 Identities = 84/134 (62%), Positives = 101/134 (75%)

Query:     1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKT 60
             MD+YQ+VEKPK ++PI ENEIRIT+ G  RNYITYA  LLQE  + E++ KAMG+AINK+
Sbjct:     1 MDKYQRVEKPKADTPIAENEIRITSMGRARNYITYAMALLQENKSNEVIFKAMGRAINKS 60

Query:    61 VAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKN 120
             V I E+IK+RIP LHQ T+I S  ITDTWEP EEGL  +E TRHVSMI+IT S  +LN +
Sbjct:    61 VTIVELIKRRIPGLHQITSIGSTDITDTWEPTEEGLQTIETTRHVSMITITLSKEQLNTS 120

Query:   121 SPGYQSPHNAEQPK 134
             S GYQ P   E  K
Sbjct:   121 SVGYQCPIPIEMVK 134

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

ZFIN|ZDB-GENE-040718-275 rpp25l "ribonuclease P/MRP 25 subunit-like" [Danio rerio (taxid:7955)]

 Score = 164 (62.8 bits), Expect = 7.7e-17, Sum P(2) = 7.7e-17
 Identities = 33/84 (39%), Positives = 53/84 (63%)

Query:    46 KEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEG--LVPVEMTR 103
             ++IV   +GQ++ K +   EI+K+RI  LHQ T ++  ++ D WEP+E G  L  + ++R
Sbjct:    72 RQIVFTGVGQSVAKAITCVEIMKRRIHGLHQLTKLAYRTLQDVWEPLEPGAGLDSLTVSR 131

Query:   104 HVSMISITFSTRELNKNSPGYQSP 127
             +V  I +  S   L+KN PGYQ+P
Sbjct:   132 NVPSIWVLLSRDSLDKNQPGYQAP 155

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2R227 LOC486757 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 48/136 (35%), Positives = 72/136 (52%)

Query:     1 MDRYQK---VE----KPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
             M+ Y+K   VE     P P+ P +  E+R+     IRN +  A   L+   A+ +V    
Sbjct:     1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query:    54 GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
             G+A  K V+ AEI+K+R+P LHQ T +  +   D+W PI  + GL P+ + RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLHFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVL 120

Query:   112 FSTRELNKNSPGYQSP 127
              S   L+ N  GYQ P
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RC74 C11H9orf23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 48/136 (35%), Positives = 72/136 (52%)

Query:     1 MDRYQK---VE----KPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
             M+ Y+K   VE     P P+ P +  E+R+     IRN +  A   L+   A+ +V    
Sbjct:     1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query:    54 GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
             G+A  K V+ AEI+K+R+P LHQ T +  +   D+W PI  + GL P+ + RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPISPDTGLDPLTVRRHVPAVWVL 120

Query:   112 FSTRELNKNSPGYQSP 127
              S   L+ N  GYQ P
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

DICTYBASE|DDB_G0281409 drpp25 "RNase MRP protein subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 201 (75.8 bits), Expect = 1.1e-15, P = 1.1e-15
 Identities = 48/129 (37%), Positives = 72/129 (55%)

Query:     1 MDRYQKVEKPKPESPINENEIRIT-TQGAIRNYITYATTLLQEKHAKEIVLKAMG-QAIN 58
             MD+Y +V +   ++    NE+RI      + + I Y   L  + H   I++KA+G + I+
Sbjct:     1 MDKYYRVPRTY-DNDTEANEVRIGGVHSQVSSSIEYGLNLFNKPH-DSIIVKAIGSKMIS 58

Query:    59 KTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELN 118
             K +  AEIIK R+P LHQ T I +  I   + P EEGL  VE+++  + I IT S   L+
Sbjct:    59 KAIFTAEIIKLRVPGLHQITEIGTTEIVTQYMPKEEGLDKVEISKKSAFIKITLSKTPLD 118

Query:   119 KNSPGYQSP 127
               +PGYQ P
Sbjct:   119 TTNPGYQPP 127

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E1C3A2 CZH9orf23 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 45/136 (33%), Positives = 75/136 (55%)

Query:     1 MDRYQK---VEKPKP----ESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
             M+ Y+K   VEKP P    + P +  E+++     IRN + YA   ++    ++I+    
Sbjct:     1 MENYKKTKIVEKPCPLPFTDLPPDIIEMKVKDGSKIRNLMGYAIGKMELDSVRQILFTGS 60

Query:    54 GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
             G+A++KT+   EI+K+R+ +LHQ T +    I + WEPI  E GL  + + R++  I + 
Sbjct:    61 GKAVSKTITCVEIMKRRLKELHQITKVLFKQIEEIWEPIVPEAGLDALTVKRNIPAICVL 120

Query:   112 FSTRELNKNSPGYQSP 127
              S   L+   PGYQ+P
Sbjct:   121 LSKDALDPQEPGYQAP 136

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q8N5L8 RPP25L "Ribonuclease P protein subunit p25-like protein" [Homo sapiens (taxid:9606)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 47/136 (34%), Positives = 71/136 (52%)

Query:     1 MDRYQK---VE----KPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
             M+ Y+K   VE     P P+ P +  E+R+     IRN +  A   L+   A+ +V    
Sbjct:     1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query:    54 GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
             G+A  K V+ AEI+K+R+P LHQ T +  +   D+W P   + GL P+ + RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPASPDTGLDPLTVRRHVPAVWVL 120

Query:   112 FSTRELNKNSPGYQSP 127
              S   L+ N  GYQ P
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1SEB9 RPP25L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 47/136 (34%), Positives = 71/136 (52%)

Query:     1 MDRYQK---VE----KPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAM 53
             M+ Y+K   VE     P P+ P +  E+R+     IRN +  A   L+   A+ +V    
Sbjct:     1 MEHYRKAGSVELPAPSPMPQLPPDTLEMRVRDGSKIRNLLGLALGRLEGGSARHVVFSGS 60

Query:    54 GQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPI--EEGLVPVEMTRHVSMISIT 111
             G+A  K V+ AEI+K+R+P LHQ T +  +   D+W P   + GL P+ + RHV  + + 
Sbjct:    61 GRAAGKAVSCAEIVKRRVPGLHQLTKLRFLQTEDSWVPTSPDTGLDPLTVRRHVPAVWVL 120

Query:   112 FSTRELNKNSPGYQSP 127
              S   L+ N  GYQ P
Sbjct:   121 LSRDPLDPNECGYQPP 136

GO:0003676 "nucleic acid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam01918	67	pfam01918, Alba, Alba	4e-18
PRK04015	91	PRK04015, PRK04015, DNA/RNA-binding protein albA;	1e-07
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	4e-07
COG1581	91	COG1581, Ssh10b, Archaeal DNA-binding protein [Tra	1e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	3e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	5e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	8e-06
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	1e-05
PRK12678	672	PRK12678, PRK12678, transcription termination fact	1e-04
pfam12328	108	pfam12328, Rpp20, Rpp20 subunit of nuclear RNase M	2e-04
TIGR00285	87	TIGR00285, TIGR00285, DNA-binding protein Alba	2e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	3e-04
PTZ00146	293	PTZ00146, PTZ00146, fibrillarin; Provisional	4e-04
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	9e-04
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	0.003
PRK10590	456	PRK10590, PRK10590, ATP-dependent RNA helicase Rhl	0.003
pfam05918	543	pfam05918, API5, Apoptosis inhibitory protein 5 (A	0.004

>gnl|CDD|216785 pfam01918, Alba, Alba

 Score = 75.7 bits (187), Expect = 4e-18
 Identities = 28/67 (41%), Positives = 43/67 (64%), Gaps = 1/67 (1%)

Query: 19 NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRI-PQLHQD 77
          N I ++++  I NY+  A  LL+   A E+VLK +G+AI+K V++AEI+K+R    LHQ 
Sbjct: 1  NVIYVSSKSPIMNYVKRALKLLENGGADEVVLKGLGRAISKAVSVAEILKRRFLKGLHQV 60

Query: 78 TAISSVS 84
            I+S  
Sbjct: 61 NVITSTV 67

Alba is a novel chromosomal protein that coats archaeal DNA without compacting it. Length = 67

>gnl|CDD|235199 PRK04015, PRK04015, DNA/RNA-binding protein albA; Provisional

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 29/101 (28%), Positives = 50/101 (49%), Gaps = 14/101 (13%)

Query: 15  PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKR-IPQ 73
              EN + +  +  + NY+    T   +  AKE+V+KA G+AI+K V +AEI++ R +P 
Sbjct: 1   MAEENVVLVGKKPVM-NYVLAVLTQFNQG-AKEVVIKARGRAISKAVDVAEIVRNRFLPD 58

Query: 74  LH-QDTAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFS 113
           +  ++  I +  +T      E+G        +VS I I   
Sbjct: 59  VEIKEIKIGTEEVTS-----EDG-----RESNVSTIEIVLE 89

Length = 91

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 49.3 bits (118), Expect = 4e-07
 Identities = 32/72 (44%), Positives = 32/72 (44%), Gaps = 19/72 (26%)

Query: 172 YGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGG 231
            G G GRG GRG G G     GG G           GRGGGRGRG         RG GGG
Sbjct: 4   GGFGGGRGGGRGGGGGGGRGGGGRGG----------GRGGGRGRG---------RGGGGG 44

Query: 232 GRGYARGRGRTG 243
           GRG   G G   
Sbjct: 45  GRGGGGGGGPGK 56

Length = 293

>gnl|CDD|224497 COG1581, Ssh10b, Archaeal DNA-binding protein [Transcription]

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 12/95 (12%)

Query: 18  ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKR-IPQLHQ 76
           EN + +  +  + NY+    T   E  A E+++KA G+AI+K V +AEI++ R IP    
Sbjct: 4   ENVVLVGKKPVM-NYVLAVLTQFNEG-ADEVIIKARGRAISKAVDVAEIVRNRFIP---- 57

Query: 77  DTAISSVSITDTWEPIEEGLVPVEMTRHVSMISIT 111
           D  I  + I       E+G      TR+VS I I 
Sbjct: 58  DVQIKDIKIGTEELEGEDG-----RTRNVSTIEIV 87

Length = 91

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 32/75 (42%), Positives = 33/75 (44%), Gaps = 19/75 (25%)

Query: 173 GRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGG 232
           G G G G GRG GRG     G  G           GRGGGRG G         RGRG GG
Sbjct: 1   GMGGGFGGGRGGGRGGGGGGGRGGG----------GRGGGRGGG---------RGRGRGG 41

Query: 233 RGYARGRGRTGGRSR 247
            G  RG G  GG  +
Sbjct: 42  GGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 25/44 (56%), Positives = 25/44 (56%)

Query: 208 GRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGG 251
             GG  G   G RG G   GRGGGGRG  RG GR  GR  GGGG
Sbjct: 2   MGGGFGGGRGGGRGGGGGGGRGGGGRGGGRGGGRGRGRGGGGGG 45

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 31/75 (41%), Positives = 31/75 (41%), Gaps = 19/75 (25%)

Query: 175 GRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRG 234
           G G G G GRG GR                   G GGG GRG G RG G   GRG G  G
Sbjct: 1   GMGGGFGGGRGGGR-------------------GGGGGGGRGGGGRGGGRGGGRGRGRGG 41

Query: 235 YARGRGRTGGRSRGG 249
              GRG  GG   G 
Sbjct: 42  GGGGRGGGGGGGPGK 56

Length = 293

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 26/44 (59%), Positives = 26/44 (59%), Gaps = 3/44 (6%)

Query: 208 GRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTGGRSRGGGG 251
           GRGGGRG   G  G G   G  GGGRG  RGRGR GG    GGG
Sbjct: 9   GRGGGRG---GGGGGGRGGGGRGGGRGGGRGRGRGGGGGGRGGG 49

Length = 293

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 3/128 (2%)

Query: 125 QSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGR 184
                AE+ + + R +++++   +  +                + +   R   R +G  R
Sbjct: 156 ARADAAERTEEEERDERRRRGDREDRQAEAERGERGRREERGRDGDDRDRRDRREQGDRR 215

Query: 185 GRGRSYARGGY-GNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARGRGRTG 243
                   G   G  +  D     G      RG      G  RG   G R   R R R G
Sbjct: 216 EERGRRDGGDRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRF--RDRDRRG 273

Query: 244 GRSRGGGG 251
            R   GG 
Sbjct: 274 RRGGDGGN 281

Length = 672

>gnl|CDD|221532 pfam12328, Rpp20, Rpp20 subunit of nuclear RNase MRP and P

 Score = 39.5 bits (93), Expect = 2e-04
 Identities = 17/73 (23%), Positives = 32/73 (43%), Gaps = 4/73 (5%)

Query: 41  QEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLVPVE 100
           +    +E+V+K MG+AI K +++A   ++       D    +V + D     E+     E
Sbjct: 36  EGLKLEEVVVKGMGKAIEKALSLALHFQREK-NYKVDVRTGTVEVVDEIVEDEDDDDDEE 94

Query: 101 M---TRHVSMISI 110
                R VS + +
Sbjct: 95  PETRKRTVSAVEV 107

The nuclear RNase P of Saccharomyces cerevisiae is made up of at least nine protein subunits; Pop1, Pop3, Pop4, Pop5, Pop6, Pop7, Pop8, Rpr2 and Rpp1. Many of these subunits seem to be present also in the RNase MRP, with the exception of Rpr2 (Rpp21) which is unique to RNase P. Human nuclear RNase P and MRP appear to contain at least 10 protein subunits, Rpp14, Rpp20, Rpp21, Rpp25, Rpp29, Rpp30, Rpp38, Rpp40, hPop1 and hPop5, although there is recent evidence that not all of these subunits are shared between P and MRP. Archaeal RNase P has at least four protein subunits homologous to eukaryotic RNase P/MRP proteins. In the yeast RNase P, Pop6 and Pop7 (the Rpp20 homologue) interact with each other and they are both interaction partners of Pop4; in the human MRP Rpp25 and Rpp20 interact with each other and Rpp25 binds to Rpp29 (Pop4). Length = 108

>gnl|CDD|129386 TIGR00285, TIGR00285, DNA-binding protein Alba

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 1/42 (2%)

Query: 29 IRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKR 70
          + NY+    T L    A E+++KA G+AI++ V +AEI++ R
Sbjct: 11 VMNYVLAVLTQLNSG-ADEVIIKARGRAISRAVDVAEIVRNR 51

Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenace of chromatin architecture and thereby in transcription repression. This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity [DNA metabolism, Chromosome-associated proteins]. Length = 87

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 37/133 (27%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 121 SPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAAN--EESYGRGRGR 178
             G        QP+ Q R Q + +Q +QPPRQ         N  N  N  +        R
Sbjct: 450 GRGRGQRGPRSQPQNQRRQQNRGRQSSQPPRQQ-------QNRSNQNNQRQSQGPNQGPR 502

Query: 179 GRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARG 238
           G+G    R R+Y    YG  Q      N  R  G+GR    +     RG      G  RG
Sbjct: 503 GQGGYNLRPRTYQPQRYGGGQGRRWNPNPYRQSGQGRSQQQQPQPEARGNQSRTPGPGRG 562

Query: 239 RGRTGGRSRGGGG 251
           +G  G ++R    
Sbjct: 563 QGGRGNQNRNQRS 575

Length = 582

>gnl|CDD|240291 PTZ00146, PTZ00146, fibrillarin; Provisional

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 29/73 (39%), Positives = 29/73 (39%), Gaps = 20/73 (27%)

Query: 179 GRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGGRGYARG 238
           G G G G GR                   G G G G G G RG G   G  GGGRG  RG
Sbjct: 1   GMGGGFGGGR-------------------GGGRGGGGG-GGRGGGGRGGGRGGGRGRGRG 40

Query: 239 RGRTGGRSRGGGG 251
            G  G    GGGG
Sbjct: 41  GGGGGRGGGGGGG 53

Length = 293

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 40.0 bits (93), Expect = 9e-04
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 13/75 (17%)

Query: 166 AANEESYGRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYE 225
            AN +       + R     +      G   +            G GR RG G       
Sbjct: 480 PANGKGNNVPAKKSRPSNDQKQYVNKSGEGISK-----VGQSYGGRGRTRGRG------- 527

Query: 226 RGRGGGGRGYARGRG 240
              GGGGRG    RG
Sbjct: 528 -RGGGGGRGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 38.1 bits (88), Expect = 0.003
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 131 EQPKLQYRYQQQQQQQNQPPRQGRIPYTAVNNAYNAANEESYGRGRGRGRGRGRGRGRSY 190
             P  + R    Q+Q      +G        +    +     GR RGRGRG G GRGR Y
Sbjct: 487 NVPAKKSRPSNDQKQYVNKSGEG-------ISKVGQSYGGR-GRTRGRGRGGGGGRGRGY 538

Query: 191 ARG 193
            RG
Sbjct: 539 NRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

>gnl|CDD|236722 PRK10590, PRK10590, ATP-dependent RNA helicase RhlE; Provisional

 Score = 37.9 bits (88), Expect = 0.003
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 12/79 (15%)

Query: 173 GRGRGRGRGRGRGRGRSYARGGYGNYQEYDGYSNWGRGGGRGRGWGYRGTGYERGRGGGG 232
           GR +  G GRG+G GR   +G               RG G  +    +       R G  
Sbjct: 390 GRQQRGGGGRGQGGGRGQQQGQPR------------RGEGGAKSASAKPAEKPSRRLGDA 437

Query: 233 RGYARGRGRTGGRSRGGGG 251
           +     + R   R      
Sbjct: 438 KPAGEQQRRRRPRKPAAAQ 456

Length = 456

>gnl|CDD|218811 pfam05918, API5, Apoptosis inhibitory protein 5 (API5)

 Score = 37.7 bits (87), Expect = 0.004
 Identities = 24/74 (32%), Positives = 27/74 (36%), Gaps = 21/74 (28%)

Query: 146 QNQPPRQGRIPYTAVNNAYNAANEESY---GRGRGRGRGRGRGRGRSYARGGYGNYQEYD 202
            N P ++ R P        N + E          GRGR RGRGRG     GG        
Sbjct: 486 NNVPAKKSR-PSNDQKQYVNKSGEGISKVGQSYGGRGRTRGRGRG----GGG-------- 532

Query: 203 GYSNWGRGGGRGRG 216
                GRG G  RG
Sbjct: 533 -----GRGRGYNRG 541

This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterized by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in human chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors. Length = 543

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG2567	179	consensus Uncharacterized conserved protein [Funct	100.0
PRK04015	91	DNA/RNA-binding protein albA; Provisional	99.85
TIGR00285	87	DNA-binding protein Alba. This protein appears so	99.8
COG1581	91	Ssh10b Archaeal DNA-binding protein [Transcription	99.74
PF01918	70	Alba: Alba; InterPro: IPR002775 Members of this fa	99.71
PF12328	144	Rpp20: Rpp20 subunit of nuclear RNase MRP and P; P	99.45
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	98.06
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	97.06
KOG3973	465	consensus Uncharacterized conserved glycine-rich p	95.49
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	93.93
PF04232	86	SpoVS: Stage V sporulation protein S (SpoVS); Inte	88.48

>KOG2567 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=8.7e-49  Score=332.07  Aligned_cols=142  Identities=48%  Similarity=0.761  Sum_probs=136.4

Q ss_pred             CCCceeccCCCCCCCCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEE
Q 025488            1 MDRYQKVEKPKPESPINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI   80 (252)
Q Consensus         1 Md~Y~rv~kp~~~~p~~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I   80 (252)
                      ||.|++|-||.+++|++.|+|||+.+++|+|||.||+.+|+++..++|||+|||.||+|||+||||||+|+++|||+|.|
T Consensus         1 ~~~e~~~~kP~~d~pp~a~emrV~~g~kirN~i~~A~~~L~~~~~r~VVfsg~Grai~KTVscaEilKrRipgLhQ~t~l   80 (179)
T KOG2567|consen    1 MSVEQPASKPFPDLPPDANEMRVKSGSKIRNLIEFATELLQKGSHRCVVFSGSGRAIVKTVSCAEILKRRIPGLHQVTRL   80 (179)
T ss_pred             CccccccCCCcccCCCCcceEEEccCchHHHHHHHHHHHhhCCCeeEEEEecCCcceeeeeeHHHHHhhhCcchhhhcee
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEeeeccccccCCCccceeeEEeeEEEEEEecCCCCCCCCCCCCCCCCCCCcchhhhhHHhhhcCCCCCCCCcccc
Q 025488           81 SSVSITDTWEPIEEGLVPVEMTRHVSMISITFSTRELNKNSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRIPYT  158 (252)
Q Consensus        81 ~s~~i~D~~EP~eEgld~v~~~R~Vs~I~ItLSk~~LD~~~pGYQ~P~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~  158 (252)
                      .+++|+|+|+|.+|||++|+++||||+|+|+||+++||++++|||+|.+                +|.++.++|.+|+
T Consensus        81 ~~~sv~d~W~p~~eGl~pl~vtRhVp~l~IlLS~deL~~~~~GyQ~P~~----------------~p~p~~~~~~p~~  142 (179)
T KOG2567|consen   81 RYTSVEDVWEPTEEGLEPLEVTRHVPMLHILLSLDELDPTSPGYQPPNP----------------QPHPRSQPRHPYS  142 (179)
T ss_pred             eeeehhhcccccccCccceEEeeccceEEEEEecccCCCCCCCccCCCC----------------CCCCCCcccCCcc
Confidence            9999999999999999999999999999999999999999999999998                2456677787774

>PRK04015 DNA/RNA-binding protein albA; Provisional

Probab=99.85  E-value=1.4e-20  Score=147.24  Aligned_cols=88  Identities=32%  Similarity=0.477  Sum_probs=75.8

Q ss_pred             CCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeE--EEEEEeeecccccc
Q 025488           16 INENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTA--ISSVSITDTWEPIE   93 (252)
Q Consensus        16 ~~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~--I~s~~i~D~~EP~e   93 (252)
                      .++|+|+|+++ +++|||.+++.+|+ ++.++|+|||+|+||+|||+||||||+||...+++.+  |+|..+.+     +
T Consensus         2 ~~en~i~Ig~k-pvmnYV~~~~~~l~-~g~~eV~iKa~G~aIskAV~vaEilk~r~~~~v~v~~I~i~se~i~~-----~   74 (91)
T PRK04015          2 AEENVVLVGKK-PVMNYVLAVLTQFN-QGAKEVVIKARGRAISKAVDVAEIVRNRFLPDVEIKEIKIGTEEVTS-----E   74 (91)
T ss_pred             CCCCEEEEcCC-cHHHHHHHHHHHHh-CCCCeEEEEEeccccchhhhHHHHHHHhccCCeEEEEEEeccEEeec-----C
Confidence            35799999986 89999999999999 5899999999999999999999999999977788877  56665543     2


Q ss_pred             CCCccceeeEEeeEEEEEEecC
Q 025488           94 EGLVPVEMTRHVSMISITFSTR  115 (252)
Q Consensus        94 Egld~v~~~R~Vs~I~ItLSk~  115 (252)
                      +|     .+++||+|+|+|++.
T Consensus        75 ~g-----~~~~VS~IEI~l~k~   91 (91)
T PRK04015         75 DG-----RESNVSTIEIVLEKK   91 (91)
T ss_pred             CC-----cEEEEEEEEEEEecC
Confidence            33     478999999999973

>TIGR00285 DNA-binding protein Alba

Probab=99.80  E-value=6.7e-19  Score=136.59  Aligned_cols=85  Identities=32%  Similarity=0.452  Sum_probs=73.2

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEE--EEEEeeeccccccCC
Q 025488           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAI--SSVSITDTWEPIEEG   95 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I--~s~~i~D~~EP~eEg   95 (252)
                      +|.|+|.++ +++|||.+++.+|++ +.++|+|||+|+||+|||+|||+||+||...+++.+|  +|.++.     .++|
T Consensus         1 e~~i~vG~K-PvmnYVlavlt~fn~-g~~eV~iKarG~aIskAVdvaeiik~r~~~~v~v~~I~i~te~~~-----~~~G   73 (87)
T TIGR00285         1 ENVVYIGNK-PVMNYVLAVLTQLNS-GADEVIIKARGRAISRAVDVAEIVRNRFIPDIKIKKIKIGTEEIK-----SEQG   73 (87)
T ss_pred             CCEEEEcCC-cHHHHHHHHHHHHhC-CCCeEEEEEecchhhhHHHHHHHHHHhccCCceEEEEEeccEEee-----cCCC
Confidence            489999986 899999999999985 8999999999999999999999999999777788776  665553     2344


Q ss_pred             CccceeeEEeeEEEEEEec
Q 025488           96 LVPVEMTRHVSMISITFST  114 (252)
Q Consensus        96 ld~v~~~R~Vs~I~ItLSk  114 (252)
                           .+++||+|+|+|++
T Consensus        74 -----~~~~VStIEI~l~~   87 (87)
T TIGR00285        74 -----REVNVSTIEIVLAK   87 (87)
T ss_pred             -----ceeeEEEEEEEEeC
Confidence                 37899999999975

This protein appears so far only in the Archaea, but may be universal there. There is a single member in three of the first four completed archaeal genomes, and a second copy in A. fulgidus. In Sulfolobus shibatae there is a tandem second copy that is poorly conserved and scores below the trusted cutoff; all other members of the family are conserved at greater than 50 % pairwise identity.

>COG1581 Ssh10b Archaeal DNA-binding protein [Transcription]

Probab=99.74  E-value=3e-17  Score=127.01  Aligned_cols=86  Identities=34%  Similarity=0.481  Sum_probs=72.1

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeE--EEEEEeeeccccccC
Q 025488           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTA--ISSVSITDTWEPIEE   94 (252)
Q Consensus        17 ~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~--I~s~~i~D~~EP~eE   94 (252)
                      ++|.|+|.++ +++|||..++.+|++ +.++|+|||.|+||||||++|||+++||..-.|+.+  |+|.+++     .++
T Consensus         3 ~envV~vG~K-PvmNYVlAvlt~fn~-g~~eViiKARGraIskAVDvaeivRnrf~p~v~ik~Iki~se~~~-----~~~   75 (91)
T COG1581           3 EENVVLVGKK-PVMNYVLAVLTQFNE-GADEVIIKARGRAISKAVDVAEIVRNRFIPDVQIKDIKIGTEELE-----GED   75 (91)
T ss_pred             CccEEEEcCc-chHHHHHHHHHHHHc-CCCEEEEEecchhhHhhHhHHHHHHHhcCCCceEEEEEecceeee-----cCC
Confidence            4699999986 899999999999997 699999999999999999999999999966566654  5555542     133


Q ss_pred             CCccceeeEEeeEEEEEEec
Q 025488           95 GLVPVEMTRHVSMISITFST  114 (252)
Q Consensus        95 gld~v~~~R~Vs~I~ItLSk  114 (252)
                      |     .+++||+|+|.|.+
T Consensus        76 g-----r~~~VS~IeI~L~k   90 (91)
T COG1581          76 G-----RTRNVSTIEIVLAK   90 (91)
T ss_pred             C-----ceeeEEEEEEEEec
Confidence            3     37899999999986

>PF01918 Alba: Alba; InterPro: IPR002775 Members of this family include the archaeal protein Alba and a number of eukaryotic proteins with no known function

Probab=99.71  E-value=6.7e-17  Score=118.97  Aligned_cols=65  Identities=38%  Similarity=0.612  Sum_probs=58.1

Q ss_pred             CeEEEcCCCchhHHHHHHHHHH---hhcCCCEEEEEEcchhHHHHHHHHHHHHHhcC-CCeeEeEEEEE
Q 025488           19 NEIRITTQGAIRNYITYATTLL---QEKHAKEIVLKAMGQAINKTVAIAEIIKKRIP-QLHQDTAISSV   83 (252)
Q Consensus        19 NeIrVt~~~~i~nyV~~A~~lL---~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~-gLhQit~I~s~   83 (252)
                      |+|+|++++++++||.+|+++|   ++.+.++|+|+|+|+||+|||+||||||+++. +|||++.+.++
T Consensus         1 n~I~V~~~~~~~~~v~~~~~~L~~~~~~~~~~V~l~g~G~aI~kaI~vaei~K~~~~~~~~qv~~~t~t   69 (70)
T PF01918_consen    1 NEIYVSSNSPIKSYVKRALKLLEGRENGKNDEVVLKGRGKAISKAISVAEILKRRFGEGLYQVNKITST   69 (70)
T ss_dssp             SEEEE-STS-HHHHHHHHHHHHT-TTHTTCSEEEEEEECCHHHHHHHHHHHHHHHTSTTTEEEEEEEEE
T ss_pred             CEEEECCCCCHHHHHHHHHHHHhhhhcCCCCEEEEEEEcHHHHHHHHHHHHHHHhhcCCCEEEEEEecc
Confidence            7999999999999999999999   44578999999999999999999999999995 89999988653

The DNA/RNA-binding protein Alba binds double-stranded DNA tightly but without sequence specificity. It binds rRNA and mRNA in vivo, and may play a role in maintaining the structural and functional stability of RNA, and, perhaps, ribosomes. It is distributed uniformly and abundantly on the chromosome. Alba has been shown to bind DNA and affect DNA supercoiling in a temperature dependent manner []. It is regulated by acetylation (alba = acetylation lowers binding affinity) by the Sir2 protein. Alba is proposed to play a role in establishment or maintenance of chromatin architecture and thereby in transcription repression. For further information see [].; GO: 0003676 nucleic acid binding; PDB: 3TOE_B 3IAB_A 1NFJ_A 1NFH_B 2Q3V_B 1VM0_B 1NH9_A 1Y9X_A 3U6Y_C 2H9U_A ....

>PF12328 Rpp20: Rpp20 subunit of nuclear RNase MRP and P; PDB: 3IAB_B

Probab=99.45  E-value=3.8e-13  Score=113.23  Aligned_cols=93  Identities=22%  Similarity=0.340  Sum_probs=67.2

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhc-------------------C------------CCEEEEEEcchhHHHHHHHHHH
Q 025488           18 ENEIRITTQGAIRNYITYATTLLQEK-------------------H------------AKEIVLKAMGQAINKTVAIAEI   66 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~~lL~~k-------------------~------------~~~VvIkg~G~AIsKAV~vAEI   66 (252)
                      ++.|+|+++++|+..|..+.+||..-                   .            .++|+|||||+||.||++||.-
T Consensus         3 ~~~iyVss~TPfmSavKRv~K~L~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~gtGkAIeKal~la~~   82 (144)
T PF12328_consen    3 PKVIYVSSKTPFMSAVKRVRKLLDKAEKRATSSVNLAKKKKSQKKKIAQLAEGSEALKSEEVTVKGTGKAIEKALSLALW   82 (144)
T ss_dssp             TTEEE--SS--HHHHHHHHHHHHHHHHHH----------------T-------------SEEEEEEEGGGHHHHHHHHHH
T ss_pred             CcEEEEecCCchHHHHHHHHHHHHhhhccccccccccccccccccccccccccccccCccEEEEEeccHHHHHHHHHHHH
Confidence            57999999999999999999999641                   1            2799999999999999999999


Q ss_pred             HHHhcCCCeeEeEEEEEEeeecccccc------------------CCCccceeeEEeeEEEEE
Q 025488           67 IKKRIPQLHQDTAISSVSITDTWEPIE------------------EGLVPVEMTRHVSMISIT  111 (252)
Q Consensus        67 LKrRi~gLhQit~I~s~~i~D~~EP~e------------------Egld~v~~~R~Vs~I~It  111 (252)
                      |++.. ++...+.++|+++.|++++.+                  +..++...+|.||+|+|.
T Consensus        83 Fq~~~-~~~V~V~TgTV~vvDdi~~~e~~~~~~~~~~~~~~~~~~~~~~~esR~R~vS~VEv~  144 (144)
T PF12328_consen   83 FQRKK-GYKVEVRTGTVEVVDDIVEDEDEDEDEEESEEREDDDDDEDEEPESRTRWVSMVEVA  144 (144)
T ss_dssp             HHHTT----EEEEEEEEEEEEE-----------------------------EEEEEEEEEEEE
T ss_pred             HhhcC-CeEEEEEeceEEEEEEEeeccccccccccccccccCccccccCccceEEeeEEEEEC
Confidence            98875 677788999999999999763                  445678999999999984

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=98.06  E-value=1.7e-05  Score=75.63  Aligned_cols=50  Identities=22%  Similarity=0.159  Sum_probs=22.6

Q ss_pred             eEEeeEEEEEEecCCCCC-CCCCCCCCCCCCCCcchhhhhHHhhhcCCCCCCCCc
Q 025488          102 TRHVSMISITFSTRELNK-NSPGYQSPHNAEQPKLQYRYQQQQQQQNQPPRQGRI  155 (252)
Q Consensus       102 ~R~Vs~I~ItLSk~~LD~-~~pGYQ~P~~~~~vk~~~~~~~~~~~~~~~~~~~~~  155 (252)
                      ++..|+|+=.+-...-|. .-+==.+|.|+|+    ..+++.+|..+++.-++++
T Consensus       288 e~Taski~k~~igrvPDRGGR~nE~~ppppem----pswqqqq~~~~~~ggrggg  338 (465)
T KOG3973|consen  288 ERTASKIHKLSIGRVPDRGGRTNEMVPPPPEM----PSWQQQQHTFDRQGGRGGG  338 (465)
T ss_pred             hhhhhhhcccccccCCCCCCCcccCCCCCCCC----CcHHHhcCCCCCCCCcCCC
Confidence            345566664444333354 2222345555543    3344555544444433333

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=97.06  E-value=0.0026  Score=67.31  Aligned_cols=16  Identities=56%  Similarity=0.854  Sum_probs=6.4

Q ss_pred             CCCCCCCCCCCCCCCC
Q 025488          230 GGGRGYARGRGRTGGR  245 (252)
Q Consensus       230 ~~grg~~rg~~~~~~~  245 (252)
                      |-+|+++||++.+.+.
T Consensus      1255 GfgrgggrgagggGgf 1270 (1282)
T KOG0921|consen 1255 GFGRGGGRGAGGGGGF 1270 (1282)
T ss_pred             CcCCCCCCCCCCCCCC
Confidence            3334444444443333

>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]

Probab=95.49  E-value=0.036  Score=53.47  Aligned_cols=16  Identities=63%  Similarity=1.039  Sum_probs=7.2

Q ss_pred             cccCCC-ccCCCCCCcc
Q 025488          184 RGRGRS-YARGGYGNYQ  199 (252)
Q Consensus       184 rgrgrg-~gr~~~g~~~  199 (252)
                      ||+||| +|+|+.++|.
T Consensus       369 rGgGRGggG~GGGggyq  385 (465)
T KOG3973|consen  369 RGGGRGGGGRGGGGGYQ  385 (465)
T ss_pred             CCCCCCCCCCCCCCCCc
Confidence            333443 4455555443

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=93.93  E-value=0.35  Score=51.91  Aligned_cols=7  Identities=29%  Similarity=0.876  Sum_probs=3.3

Q ss_pred             eeccccc
Q 025488           86 TDTWEPI   92 (252)
Q Consensus        86 ~D~~EP~   92 (252)
                      .|+|.-+
T Consensus      1082 VDdWIkl 1088 (1282)
T KOG0921|consen 1082 VDDWIKL 1088 (1282)
T ss_pred             eeceeeE
Confidence            3555433

>PF04232 SpoVS: Stage V sporulation protein S (SpoVS); InterPro: IPR007347 In Bacillus subtilis this protein interferes with sporulation at an early stage and this inhibitory effect is overcome by SpoIIB and SpoVG

Probab=88.48  E-value=10  Score=29.70  Aligned_cols=51  Identities=18%  Similarity=0.320  Sum_probs=35.4

Q ss_pred             CeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcc-hhHHHHHHHHHHHHHhc
Q 025488           19 NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMG-QAINKTVAIAEIIKKRI   71 (252)
Q Consensus        19 NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G-~AIsKAV~vAEILKrRi   71 (252)
                      +.++|+++++....-..-...|.+.  ..+.|.++| .|++.||.-.-|-+.-+
T Consensus         2 e~LKVSs~S~p~~vAgAIa~~lre~--~~v~lqaiGa~AvnqAvKAIAiAR~~l   53 (86)
T PF04232_consen    2 EVLKVSSKSNPNAVAGAIAGVLREG--GKVELQAIGAGAVNQAVKAIAIARGYL   53 (86)
T ss_dssp             -EEEE-TT--HHHHHHHHHHHHHHT--SEEEEEE-SHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCCHHHHHHHHHHHHhcC--CcEEEEEECHHHHHHHHHHHHHHHHhh
Confidence            4689999998888887777777753  599999999 57888887766666544

SpoVS seems to play a positive role in allowing progression beyond stage V of sporulation. Null mutations in the spoVS gene block sporulation at stage V, impairing the development of heat resistance and coat assembly [].; PDB: 2EH1_B 2EK0_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
2h9u_A	102	DNA/RNA-binding protein ALBA 2; archaea, DNA bindi	99.93
1nfj_A	89	ALBA, conserved hypothetical protein AF1956; SIR2,	99.92
2bky_A	97	DNA/RNA-binding protein ALBA 1; archaeal DNA bindi	99.92
1nh9_A	87	MJA10B, DNA-binding protein ALBA; 2.00A {Methanoca	99.91
3toe_A	91	MTH10B, DNA/RNA-binding protein ALBA; SAC10B famil	99.86
2bky_X	89	DNA/RNA-binding protein ALBA 2; archaeal DNA bindi	99.85
1vm0_A	130	Unknown protein; structural genomics, protein stru	99.78
3iab_B	140	Ribonucleases P/MRP protein subunit POP7; RNAse P,	99.71
3iab_A	158	Ribonucleases P/MRP protein subunit POP6; RNAse P,	98.29
1b34_A	119	Protein (small nuclear ribonucleoprotein SM D1); s	89.37
2ek0_A	90	Stage V sporulation protein S (spovs) related Pro;	82.07

>2h9u_A DNA/RNA-binding protein ALBA 2; archaea, DNA binding protein, structural G NPPSFA, national project on protein structural and function analyses; 2.00A {Aeropyrum pernix} PDB: 3u6y_A*

Probab=99.93  E-value=8.6e-26  Score=178.77  Aligned_cols=93  Identities=32%  Similarity=0.456  Sum_probs=84.5

Q ss_pred             CCeEEEcCCCchhHHHHHHH-HHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhc-CCCe-eEeEEEEEEeeeccccccC
Q 025488           18 ENEIRITTQGAIRNYITYAT-TLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRI-PQLH-QDTAISSVSITDTWEPIEE   94 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~-~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi-~gLh-Qit~I~s~~i~D~~EP~eE   94 (252)
                      +|+|+|++++. +|||.+|+ .||+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|++++|.||   +
T Consensus         6 ~n~I~V~~k~~-~nyV~~a~~~ll~-~g~~eV~ikA~G~AIskAV~vaEilk~r~~~gl~~q~i~i~s~~i~d~~e---~   80 (102)
T 2h9u_A            6 APEVRIGRKPV-MNYVLAILTTLME-QGTNQVVVKARGRNINRAVDAVEIVRKRFAKNIEIKDIKIDSQEIEVQTP---E   80 (102)
T ss_dssp             CCEEECCSSCH-HHHHHHHHHHHTS-TTCCEEEEEEETTHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEEEEECT---T
T ss_pred             CCEEEEcCCCH-HHHHHHHHHHHHh-CCCCEEEEEEechhhhHHHHHHHHHHHhccCCceEEEEEEeeEEEecccc---C
Confidence            59999999854 89999999 9998 58999999999999999999999999999 7999 999999999999865   5


Q ss_pred             CCccceeeEEeeEEEEEEecCCCC
Q 025488           95 GLVPVEMTRHVSMISITFSTRELN  118 (252)
Q Consensus        95 gld~v~~~R~Vs~I~ItLSk~~LD  118 (252)
                      |+   ..+|+||+|+|+|+++|..
T Consensus        81 g~---~~~r~vS~IeI~Lsk~~~~  101 (102)
T 2h9u_A           81 GQ---TRTRRVSSIEICLEKAGES  101 (102)
T ss_dssp             SC---EEEEEEEEEEEEEEECSSC
T ss_pred             Cc---cceeEeeeEEEEEEccCCC
Confidence            54   3799999999999998753

>1nfj_A ALBA, conserved hypothetical protein AF1956; SIR2, HDAC, gene regulation, transcription; 2.00A {Archaeoglobus fulgidus} SCOP: d.68.6.1 PDB: 1nfh_A 2z7c_A*

Probab=99.92  E-value=1.4e-24  Score=167.87  Aligned_cols=86  Identities=30%  Similarity=0.534  Sum_probs=78.4

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhc-CCCe-eEeEEEEEEeeeccccccC
Q 025488           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRI-PQLH-QDTAISSVSITDTWEPIEE   94 (252)
Q Consensus        17 ~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi-~gLh-Qit~I~s~~i~D~~EP~eE   94 (252)
                      ++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.|     ++
T Consensus         2 ~~n~I~V~~k~-v~~yV~~~~~~l~-~g~~eV~ika~G~AIskAV~vaeilk~r~~~gl~i~~i~i~s~~i~~-----e~   74 (89)
T 1nfj_A            2 AEHVVYVGNKP-VMNYVLATLTQLN-EGADEVVIKARGRAISRAVDVAEIVRNRFMPGVKVKEIKIDTEELES-----EQ   74 (89)
T ss_dssp             -CEEEECCSSC-HHHHHHHHHHHHH-TTCSEEEEEEETTHHHHHHHHHHHHHHHTCTTCEEEEEEEEEEECCC-----BT
T ss_pred             CCCEEEEcCCC-HHHHHHHHHHHHh-CCCCEEEEEEecHHHHHHHHHHHHHHHhccCCcEEEEEEEeEEEEEc-----CC
Confidence            57999999975 9999999999998 48999999999999999999999999999 8899 999999998865     45


Q ss_pred             CCccceeeEEeeEEEEEEec
Q 025488           95 GLVPVEMTRHVSMISITFST  114 (252)
Q Consensus        95 gld~v~~~R~Vs~I~ItLSk  114 (252)
                      |     .+|+||+|+|+|++
T Consensus        75 g-----~~r~vs~IeI~L~k   89 (89)
T 1nfj_A           75 G-----RRSNVSTIEIVLAK   89 (89)
T ss_dssp             T-----BCCEEEEEEEEEEC
T ss_pred             C-----cEEEeeEEEEEEEC
Confidence            5     58999999999985

>2bky_A DNA/RNA-binding protein ALBA 1; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 1h0x_A* 1h0y_A* 1y9x_A

Probab=99.92  E-value=2.3e-24  Score=169.20  Aligned_cols=89  Identities=33%  Similarity=0.503  Sum_probs=79.2

Q ss_pred             CCCCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCC--C-eeEeEEEEEEeeecccc
Q 025488           15 PINENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQ--L-HQDTAISSVSITDTWEP   91 (252)
Q Consensus        15 p~~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~g--L-hQit~I~s~~i~D~~EP   91 (252)
                      +.++|+|+|++++ +++||.+|+.||+ +++++|+|||+|+||+|||+||||||+||.+  | ||.++|+|++++|    
T Consensus         6 ~~~~n~I~V~~k~-v~~YV~~a~~ll~-~g~~eV~ikA~G~AIskAV~vaeilk~r~~~~~l~~~~i~i~s~~i~~----   79 (97)
T 2bky_A            6 PTPSNVVLIGKKP-VMNYVLAALTLLN-QGVSEIVIKARGRAISKAVDTVEIVRNRFLPDKIEIKEIRVGSQVVTS----   79 (97)
T ss_dssp             ---CCEEECCSSC-HHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTSTTTEEEEEEEEEEEEEEE----
T ss_pred             CCCCCEEEEcCcC-HHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCCceEEEEEEeeeEEEec----
Confidence            4568999999987 9999999999999 4899999999999999999999999999965  8 8999999999977    


Q ss_pred             ccCCCccceeeEEeeEEEEEEecC
Q 025488           92 IEEGLVPVEMTRHVSMISITFSTR  115 (252)
Q Consensus        92 ~eEgld~v~~~R~Vs~I~ItLSk~  115 (252)
                       ++|     .+|+||+|+|+|+++
T Consensus        80 -e~G-----~~r~vS~IeI~L~k~   97 (97)
T 2bky_A           80 -QDG-----RQSRVSTIEIAIRKK   97 (97)
T ss_dssp             -TTS-----CEEEEEEEEEEEEEC
T ss_pred             -CCC-----cEEEeeEEEEEEEcC
Confidence             455     589999999999973

>1nh9_A MJA10B, DNA-binding protein ALBA; 2.00A {Methanocaldococcus jannaschii} SCOP: d.68.6.1

Probab=99.91  E-value=2e-24  Score=166.46  Aligned_cols=84  Identities=30%  Similarity=0.527  Sum_probs=73.5

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhc-CCCe-eEeEEEEEEeeeccccccCC
Q 025488           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRI-PQLH-QDTAISSVSITDTWEPIEEG   95 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi-~gLh-Qit~I~s~~i~D~~EP~eEg   95 (252)
                      +|+|+|+++ ++++||.+|+.||++ + ++|+|||+|+||+|||+||||||+|| ++|| |.++|+|+++.|     ++|
T Consensus         2 ~n~I~V~~k-~v~~YV~~~~~~l~~-g-~eV~ikA~G~AIskAV~vaeilk~r~~~~l~v~~i~i~s~~i~~-----e~g   73 (87)
T 1nh9_A            2 DNVVLIGKK-PVMNYVVAVLTQLTS-N-DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKIEIGTDKVKN-----PDG   73 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHH-C-SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEEEEEEEC-----------
T ss_pred             CCEEEEeCc-chHHHHHHHHHHhcC-C-CEEEEEEechHHHHHHHHHHHHHHhccCCeEEEEEEEeEEEEEc-----CCC
Confidence            699999999 999999999999996 6 99999999999999999999999999 6799 999999998876     344


Q ss_pred             CccceeeEEeeEEEEEEec
Q 025488           96 LVPVEMTRHVSMISITFST  114 (252)
Q Consensus        96 ld~v~~~R~Vs~I~ItLSk  114 (252)
                           .+|+||+|+|+|++
T Consensus        74 -----~~r~vS~IeI~L~k   87 (87)
T 1nh9_A           74 -----REVNVSTIEIVLAK   87 (87)
T ss_dssp             ------CCCEEEEEEEEEC
T ss_pred             -----cEEEeeEEEEEEEC
Confidence                 58999999999985

>3toe_A MTH10B, DNA/RNA-binding protein ALBA; SAC10B family, alpha/beta mixed, homodimer, unknown function; 2.20A {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=99.86  E-value=2.1e-21  Score=150.81  Aligned_cols=89  Identities=29%  Similarity=0.402  Sum_probs=76.7

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCC
Q 025488           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGL   96 (252)
Q Consensus        17 ~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgl   96 (252)
                      ++|.|+|.++ ++++||.+|+.||+ +++++|+|||+|+||+|||++|||||+||...   +++.++++..+|.+.++| 
T Consensus         3 ~~~vv~vg~K-pv~~YV~~~i~~~n-~g~~eV~ikA~G~aIskAVdvaei~k~R~~~~---v~v~~I~I~se~~~~e~G-   76 (91)
T 3toe_A            3 EENVVYIGNK-PVMNYVLAVVTQMN-GGTSEVILKARGIAISRAVDVAEIVRNRFIPD---IQIENIDICTEEIIGNEG-   76 (91)
T ss_dssp             --CCEECCSS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHTCTT---CEEEEEEEEEEEEECTTS-
T ss_pred             ccCEEEECCC-cHHHHHHHHHHHHh-CCCCEEEEEEehhHHHHHHHHHHHHHHhccCC---cEEEEEEeeeEEeecCCC-
Confidence            3689999986 89999999999998 48999999999999999999999999999653   566666677778888888 


Q ss_pred             ccceeeEEeeEEEEEEecC
Q 025488           97 VPVEMTRHVSMISITFSTR  115 (252)
Q Consensus        97 d~v~~~R~Vs~I~ItLSk~  115 (252)
                          .+|+||+|+|+|+++
T Consensus        77 ----~~r~VS~IeI~L~k~   91 (91)
T 3toe_A           77 ----TATNVSAIEIQLRKD   91 (91)
T ss_dssp             ----SEEEEEEEEEEEEC-
T ss_pred             ----ceeEeeEEEEEEECC
Confidence                489999999999985

>2bky_X DNA/RNA-binding protein ALBA 2; archaeal DNA binding protein, DNA condensation, DNA-binding, DNA binding protein; 1.70A {Sulfolobus solfataricus} SCOP: d.68.6.1 PDB: 2a2y_A 1udv_A

Probab=99.85  E-value=3.5e-21  Score=148.99  Aligned_cols=84  Identities=19%  Similarity=0.241  Sum_probs=71.2

Q ss_pred             CCCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCC
Q 025488           17 NENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGL   96 (252)
Q Consensus        17 ~~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgl   96 (252)
                      ++|.|+|+++ +++|||.+|+.||+ +++++|+|||+|+||+|||+||||||+||.++|++.+|...+-        +  
T Consensus         5 ~~~iv~vg~k-pv~nYV~~~~~~ln-~g~~eV~ikA~G~aIskAVdvaeilk~R~~~~~~i~~i~i~se--------~--   72 (89)
T 2bky_X            5 LNEIVVRKTK-NVEDHVLDVIVLFN-QGIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGSE--------V--   72 (89)
T ss_dssp             CEEEECCTTS-CHHHHHHHHHHHHH-TTCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEE--------E--
T ss_pred             CCCEEEECCC-CHHHHHHHHHHHHh-CCCCEEEEEEechHHHHHHHHHHHHHHhccCceEEEEEEeccc--------c--
Confidence            3466666664 99999999999999 5899999999999999999999999999998899977654321        1  


Q ss_pred             ccceeeEEeeEEEEEEecC
Q 025488           97 VPVEMTRHVSMISITFSTR  115 (252)
Q Consensus        97 d~v~~~R~Vs~I~ItLSk~  115 (252)
                         ..+|+||+|+|+|++.
T Consensus        73 ---~~~r~VS~IeI~L~k~   88 (89)
T 2bky_X           73 ---RDRRRISYILLRLKRV   88 (89)
T ss_dssp             ---ETTEEEEEEEEEEEEC
T ss_pred             ---CcceEeeeEEEEEEec
Confidence               4589999999999974

>1vm0_A Unknown protein; structural genomics, protein structure initiative, CESG, AT2 unknown function, nitrate; 1.80A {Arabidopsis thaliana} SCOP: d.68.6.2 PDB: 2q3v_A

Probab=99.78  E-value=6.9e-19  Score=144.39  Aligned_cols=90  Identities=23%  Similarity=0.339  Sum_probs=70.1

Q ss_pred             CCCCCeEEEcC-CCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeecccccc
Q 025488           15 PINENEIRITT-QGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIE   93 (252)
Q Consensus        15 p~~~NeIrVt~-~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~e   93 (252)
                      ..++|+|+|+. ++++++||.+|+.+|+  ++++|+|||||+||++||+||||||+|+...++.+.|+|.++.+.     
T Consensus        17 ~~~~N~I~Vs~~kkP~~nYV~~a~~~l~--g~~eV~LkA~G~AIskAV~VAEiLkrr~l~~ikkI~t~t~~i~~~-----   89 (130)
T 1vm0_A           17 SQKKNRIQVSNTKKPLFFYVNLAKRYMQ--QYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD-----   89 (130)
T ss_dssp             --CTTEEECCCTTSCHHHHHHHHHHHHH--HHSEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC-------
T ss_pred             CCCCCEEEEecCCCCceeHHHHHHHHHc--CCCEEEEEechHHHHHHHHHHHHHHhcCcceEEEEEeeeEEeccC-----
Confidence            34689999997 4899999999999998  579999999999999999999999999754455556677666441     


Q ss_pred             CCCccceeeEEeeEEEEEEecC
Q 025488           94 EGLVPVEMTRHVSMISITFSTR  115 (252)
Q Consensus        94 Egld~v~~~R~Vs~I~ItLSk~  115 (252)
                      ++    ....++|.|+|+|++.
T Consensus        90 ~~----~r~v~~skIEI~L~k~  107 (130)
T 1vm0_A           90 AR----GRPVQKAKIEITLVKS  107 (130)
T ss_dssp             --------CEEEEEEEEEEEEC
T ss_pred             CC----CcccccceEEEEEEec
Confidence            11    2355679999999964

>3iab_B Ribonucleases P/MRP protein subunit POP7; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=99.71  E-value=1.3e-16  Score=132.26  Aligned_cols=107  Identities=13%  Similarity=0.157  Sum_probs=86.4

Q ss_pred             eccCCCCCCCCC----CCeEEEcCCCchhHHHHHHHHHHhhc---CCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEe
Q 025488            6 KVEKPKPESPIN----ENEIRITTQGAIRNYITYATTLLQEK---HAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDT   78 (252)
Q Consensus         6 rv~kp~~~~p~~----~NeIrVt~~~~i~nyV~~A~~lL~~k---~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit   78 (252)
                      .+.+..+-.|..    +|+|+|+++++|...|..|.+||++-   +.++|+|+|||+||.|||+||..|+++. ++...+
T Consensus        14 ~irk~P~~k~~s~~~~~~~iYV~skTpf~S~vkRi~KlL~~~~k~~~~eV~v~GmGkAIeKal~lAl~fq~~~-~~~V~V   92 (140)
T 3iab_B           14 RVTKHPSLKTLTHKQIHTTIFVKSTTPYVSALKRINKFLDSVHKQGSSYVAVLGMGKAVEKTLALGCHFQDQK-NKKIEV   92 (140)
T ss_dssp             CCEECCCCCCCCHHHHTTEEECCSSCCHHHHHHHHHHHHHHHHHHTCSEEEEEEEGGGHHHHHHHHHHHHHTT-CCCEEE
T ss_pred             ccCCCCCCcCccccccCceEEEecCCchHHHHHHHHHHHHHhhcCCCcEEEEEechHHHHHHHHHHHHHhhcC-CEEEEE
Confidence            344444444543    79999999999999999999999751   5799999999999999999999999974 588889


Q ss_pred             EEEEEEeeeccccccCC------------CccceeeEEeeEEEEEEe
Q 025488           79 AISSVSITDTWEPIEEG------------LVPVEMTRHVSMISITFS  113 (252)
Q Consensus        79 ~I~s~~i~D~~EP~eEg------------ld~v~~~R~Vs~I~ItLS  113 (252)
                      .++|+.+.|+++|.++.            .++...+|+||+|||.|.
T Consensus        93 ~T~TV~vvDd~~~~~~~~~~~d~~~~d~d~e~~~rkR~vS~VeirIy  139 (140)
T 3iab_B           93 YTKTIEVLDEVITEGQADIDMESDVEDDDKETQLKKRAVSGVELRIY  139 (140)
T ss_dssp             EEEEEEEEEECC--------------------CEEEEEEEEEEEEEE
T ss_pred             EeceEEEEEeeeecCCcccccccccccccccchheeeeeeeEEEEEe
Confidence            99999999999998764            568899999999999986

>3iab_A Ribonucleases P/MRP protein subunit POP6; RNAse P, ribonuclease P, ribonuclease MRP, POP6, POP6P, POP7, POP7P, NME1, yeast, tRNA; 2.70A {Saccharomyces cerevisiae}

Probab=98.29  E-value=8e-06  Score=68.67  Aligned_cols=91  Identities=19%  Similarity=0.198  Sum_probs=69.7

Q ss_pred             EEEcCCCchhHHHHHHHHHHhh-----cCCCEEEEEEcchhHHHHHHHHHHHHHhc----CCCeeEeEEEEEEeeecccc
Q 025488           21 IRITTQGAIRNYITYATTLLQE-----KHAKEIVLKAMGQAINKTVAIAEIIKKRI----PQLHQDTAISSVSITDTWEP   91 (252)
Q Consensus        21 IrVt~~~~i~nyV~~A~~lL~~-----k~~~~VvIkg~G~AIsKAV~vAEILKrRi----~gLhQit~I~s~~i~D~~EP   91 (252)
                      +.|+++..|+..|+.-.++|+.     ...+.|.|.+.|..|.|++++.||+|..+    +.|||++++.+.....   |
T Consensus        47 ~kIsKNDnIK~~V~kL~~~l~~~~~s~~~~~~V~l~syg~hIQKmLSIvEI~Kk~~~~~~~~l~Q~NkL~~f~~v~---~  123 (158)
T 3iab_A           47 HGISKNDNIKKSVNKLDKQINMADRSLGLQQVVCIFSYGPHIQKMLSILEIFKKGYIKNNKKIYQWNKLTSFDIKR---E  123 (158)
T ss_dssp             EECCTTCCHHHHHHHHHHHHTCSCTTTTCEEEEEEEEEGGGHHHHHHHHHHHHHHHHTTTCCCEEEEEEEEEEEC-----
T ss_pred             EEeccCchHHHHHHHHHHHHhhhccccccCceEEEEecChHHHHHHHHHHHHHHHhhcCCccHHHHhhhhhhccCC---c
Confidence            4489999999999999898841     24589999999999999999999999977    2499999998865432   2


Q ss_pred             ccCCCccceeeEEeeEEEEEEecCC
Q 025488           92 IEEGLVPVEMTRHVSMISITFSTRE  116 (252)
Q Consensus        92 ~eEgld~v~~~R~Vs~I~ItLSk~~  116 (252)
                      ...  +-++...+||-+-+.+++++
T Consensus       124 grN--ELle~r~~vPILi~~i~~~~  146 (158)
T 3iab_A          124 GRN--ELQEERLKVPILVTMVSDSE  146 (158)
T ss_dssp             -------CCCCEEEEEEEEEEESSS
T ss_pred             ccc--HHHHhhcCCCEEEEEEeccc
Confidence            222  23466778998888888753

>1b34_A Protein (small nuclear ribonucleoprotein SM D1); snRNP, splicing, spliceosome, core snRNP domain, systemi erythematosus, SLE, RNA binding protein; 2.50A {Homo sapiens} SCOP: b.38.1.1 PDB: 2y9a_B 2y9b_B 2y9c_B 2y9d_B 3cw1_B 3pgw_X* 3s6n_A

Probab=89.37  E-value=0.069  Score=42.40  Aligned_cols=7  Identities=14%  Similarity=0.268  Sum_probs=2.9

Q ss_pred             EEeeEEE
Q 025488          103 RHVSMIS  109 (252)
Q Consensus       103 R~Vs~I~  109 (252)
                      +++..|.
T Consensus        53 ~~lg~v~   59 (119)
T 1b34_A           53 VQLETLS   59 (119)
T ss_dssp             EEEEEEE
T ss_pred             eEcceEE
Confidence            3444443

>2ek0_A Stage V sporulation protein S (spovs) related Pro; structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} PDB: 2eh1_A

Probab=82.07  E-value=15  Score=28.03  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=39.1

Q ss_pred             CeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcc-hhHHHHHHHHHHHHHhc
Q 025488           19 NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMG-QAINKTVAIAEIIKKRI   71 (252)
Q Consensus        19 NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G-~AIsKAV~vAEILKrRi   71 (252)
                      +.+.|+++++....-..--.+|.+.  ..|.|.++| .|++.||.-.-|-+.=+
T Consensus         2 e~LKVSs~S~P~~VAGAIA~~lRe~--~~veiqAIGa~AvNqAVKAIAIARg~l   53 (90)
T 2ek0_A            2 ETLRVSSKSRPNSVAGAIAAMLRTK--GEVEVQAIGPQAVNQAVKAIAIARGYI   53 (90)
T ss_dssp             CEEEECTTCCHHHHHHHHHHHHHHH--SEEEEEECSHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEcCCCChHHHHHHHHHHHhcC--CceEEEEECHHHHHHHHHHHHHHHHhh
Confidence            4689999998888777767777754  599999999 58888887666655544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d2bkya1	89	d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archae	1e-27
d1nfja_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon A	1e-27
d1nh9a_	87	d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon M	2e-26
d2bkyx1	86	d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archae	2e-20
d1vm0a_	99	d.68.6.2 (A:) Hypothetical protein At2g34160 {Thal	9e-20

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]} Length = 89

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

 Score = 99.8 bits (249), Expect = 1e-27
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 9/95 (9%)

Query: 19  NEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDT 78
           N + I  +  + NY+  A TLL +    EIV+KA G+AI+K V   EI++ R   L    
Sbjct: 2   NVVLIGKKP-VMNYVLAALTLLNQG-VSEIVIKARGRAISKAVDTVEIVRNRF--LPDKI 57

Query: 79  AISSVSITDTWEPIEEGLVPVEMTRHVSMISITFS 113
            I  + +       ++G         VS I I   
Sbjct: 58  EIKEIRVGSQVVTSQDG-----RQSRVSTIEIAIR 87

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 99.4 bits (248), Expect = 1e-27
 Identities = 25/96 (26%), Positives = 44/96 (45%), Gaps = 10/96 (10%)

Query: 18  ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQD 77
           E+ + +  +  + NY+    T L E    E+V+KA G+AI++ V +AEI++ R       
Sbjct: 1   EHVVYVGNKP-VMNYVLATLTQLNEGA-DEVVIKARGRAISRAVDVAEIVRNR---FMPG 55

Query: 78  TAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFS 113
             +  + I       E+G        +VS I I  +
Sbjct: 56  VKVKEIKIDTEELESEQG-----RRSNVSTIEIVLA 86

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 87

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 96.3 bits (240), Expect = 2e-26
 Identities = 27/96 (28%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 18  ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQD 77
           +N + I  +  + NY+    T L      E+++KA G+AINK V +AE+I+ R     +D
Sbjct: 2   DNVVLIGKKP-VMNYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNR---FIKD 55

Query: 78  TAISSVSITDTWEPIEEGLVPVEMTRHVSMISITFS 113
             I  + I        +G        +VS I I  +
Sbjct: 56  IKIKKIEIGTDKVKNPDG-----REVNVSTIEIVLA 86

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]} Length = 86

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

 Score = 80.5 bits (199), Expect = 2e-20
 Identities = 19/94 (20%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 18  ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQD 77
            NEI +     + +++     L  +    E++LK  G+ I+K V +   +K R+    Q 
Sbjct: 2   LNEIVVRKTKNVEDHVLDVIVLFNQG-IDEVILKGTGREISKAVDVYNSLKDRLGDGVQ- 59

Query: 78  TAISSVSITDTWEPIEEGLVPVEMTRHVSMISIT 111
             + +V         E         R +S I + 
Sbjct: 60  --LVNVQTGS-----EVR-----DRRRISYILLR 81

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 99

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 79.1 bits (195), Expect = 9e-20
 Identities = 21/95 (22%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 18  ENEIRITTQG-AIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQ 76
           +N I+++     +  Y+  A   +Q+    ++ L A+G AI   V + EI+K     + +
Sbjct: 2   KNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILKNNGFAVEK 59

Query: 77  DTAISSVSITDTWEPIEEGLVPVEMTRHVSMISIT 111
               S V I D                  + I IT
Sbjct: 60  KIMTSIVDIKDDAR---------GRPVQKAKIEIT 85

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d2bkya1	89	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.91
d1nfja_	87	DNA-binding protein AlbA {Archaeon Archaeoglobus f	99.89
d1nh9a_	87	DNA-binding protein AlbA {Archaeon Methanococcus j	99.88
d2bkyx1	86	DNA-binding protein AlbA {Archaeon Sulfolobus solf	99.85
d1vm0a_	99	Hypothetical protein At2g34160 {Thale cress (Arabi	99.79

>d2bkya1 d.68.6.1 (A:9-97) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b1 [TaxId: 2287]

Probab=99.91  E-value=1.1e-24  Score=166.78  Aligned_cols=89  Identities=31%  Similarity=0.476  Sum_probs=83.2

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCCc
Q 025488           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLV   97 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgld   97 (252)
                      .|.|+|+++ +++|||.+|+.||++ +.++|+|||+|+||+|||+|||+||+||  |||.++|..++|.++|+|.+||  
T Consensus         1 ~n~I~IG~K-p~mnYV~a~~~~l~~-g~~~V~iKArG~aIskAVdVaEiik~R~--l~~~~~i~~i~I~se~~~~~~G--   74 (89)
T d2bkya1           1 SNVVLIGKK-PVMNYVLAALTLLNQ-GVSEIVIKARGRAISKAVDTVEIVRNRF--LPDKIEIKEIRVGSQVVTSQDG--   74 (89)
T ss_dssp             CCEEECCSS-CHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHT--STTTEEEEEEEEEEEEEEETTS--
T ss_pred             CCEEEECCC-cHHHHHHHHHHHHhC-CCCeEEEEEehhhhHHHHHHHHHHHHhc--ccCceEEEEEEeccEEeecCCC--
Confidence            389999986 799999999999985 7899999999999999999999999998  8999999999999999999998  


Q ss_pred             cceeeEEeeEEEEEEecC
Q 025488           98 PVEMTRHVSMISITFSTR  115 (252)
Q Consensus        98 ~v~~~R~Vs~I~ItLSk~  115 (252)
                         .+|+||+|+|+|+++
T Consensus        75 ---~~r~VS~IeI~L~kk   89 (89)
T d2bkya1          75 ---RQSRVSTIEIAIRKK   89 (89)
T ss_dssp             ---CEEEEEEEEEEEEEC
T ss_pred             ---cEEEEEEEEEEEEcC
Confidence               489999999999974

>d1nfja_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.89  E-value=1.3e-23  Score=160.17  Aligned_cols=87  Identities=30%  Similarity=0.470  Sum_probs=80.6

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCCc
Q 025488           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLV   97 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgld   97 (252)
                      +|+|+|+++ +++|||.+|+.||++ +.++|+|||+|+||+|||+||||||+|   |||.++|..+++.++|+|.+||. 
T Consensus         1 en~I~Ig~K-p~~~YV~~~~~~l~~-g~~eV~ikArG~aIs~AVdVaEi~k~r---~~~~~~i~~i~i~se~~~~e~g~-   74 (87)
T d1nfja_           1 EHVVYVGNK-PVMNYVLATLTQLNE-GADEVVIKARGRAISRAVDVAEIVRNR---FMPGVKVKEIKIDTEELESEQGR-   74 (87)
T ss_dssp             CEEEECCSS-CHHHHHHHHHHHHHT-TCSEEEEEEETTHHHHHHHHHHHHHHH---TCTTCEEEEEEEEEEECCCBTTB-
T ss_pred             CCEEEEcCC-cHHHHHHHHHHHHhC-CCCEEEEEEehhHHHHHHHHHHHHHHh---ccCCcEEEEEEEccEEEecCCCc-
Confidence            689999997 799999999999985 789999999999999999999999999   47778999999999999999983 


Q ss_pred             cceeeEEeeEEEEEEec
Q 025488           98 PVEMTRHVSMISITFST  114 (252)
Q Consensus        98 ~v~~~R~Vs~I~ItLSk  114 (252)
                          +|+||+|+|+|++
T Consensus        75 ----~r~VS~IeI~L~K   87 (87)
T d1nfja_          75 ----RSNVSTIEIVLAK   87 (87)
T ss_dssp             ----CCEEEEEEEEEEC
T ss_pred             ----eeEEEEEEEEEeC
Confidence                7899999999986

>d1nh9a_ d.68.6.1 (A:) DNA-binding protein AlbA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.88  E-value=1.3e-22  Score=154.54  Aligned_cols=86  Identities=30%  Similarity=0.416  Sum_probs=71.1

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCCc
Q 025488           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLV   97 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgld   97 (252)
                      +|+|+|+++ ++++||.+|+.+|++.  ++|+|||+|+||+|||+||||||+||...+++.+|   ++.++|.|.+||  
T Consensus         2 en~I~Ig~K-P~m~YV~~~~~~~~~~--~eV~lKArG~aIsrAVdVaEiik~R~~~~~~i~~i---~i~se~~~~~~g--   73 (87)
T d1nh9a_           2 DNVVLIGKK-PVMNYVVAVLTQLTSN--DEVIIKARGKAINKAVDVAEMIRNRFIKDIKIKKI---EIGTDKVKNPDG--   73 (87)
T ss_dssp             CSEEEECSS-CHHHHHHHHHHHHHHC--SEEEEEEEGGGHHHHHHHHHHHHHHTCTTCEEEEE---EEEEEC--------
T ss_pred             CCEEEEcCC-CHHHHHHHHHHHhccC--CeEEEEEcchhhhHHHHHHHHHHHhccCCeEEEEE---EecceEEecCCC--
Confidence            699999987 7999999999999974  89999999999999999999999999877777665   466778888888  


Q ss_pred             cceeeEEeeEEEEEEec
Q 025488           98 PVEMTRHVSMISITFST  114 (252)
Q Consensus        98 ~v~~~R~Vs~I~ItLSk  114 (252)
                         .+|+||+|+|+|++
T Consensus        74 ---~~r~VS~IeI~L~k   87 (87)
T d1nh9a_          74 ---REVNVSTIEIVLAK   87 (87)
T ss_dssp             ----CCCEEEEEEEEEC
T ss_pred             ---ceeEEEEEEEEEeC
Confidence               48999999999986

>d2bkyx1 d.68.6.1 (X:4-89) DNA-binding protein AlbA {Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: DNA-binding protein AlbA
domain: DNA-binding protein AlbA
species: Archaeon Sulfolobus solfataricus, Sso10b2 [TaxId: 2287]

Probab=99.85  E-value=9e-22  Score=149.44  Aligned_cols=84  Identities=23%  Similarity=0.305  Sum_probs=75.2

Q ss_pred             CCeEEEcCCCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCCCc
Q 025488           18 ENEIRITTQGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEGLV   97 (252)
Q Consensus        18 ~NeIrVt~~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEgld   97 (252)
                      .|+|+|+.+++++|||.+|+.||++ +.++|+|||+|+||+|||++||+||+||.++||+++|+..+        |+   
T Consensus         2 ~nei~~~~~kp~~nYV~a~i~~f~~-g~~eV~iKArG~aIskAVdVaEiir~R~~~~v~i~~I~i~s--------E~---   69 (86)
T d2bkyx1           2 LNEIVVRKTKNVEDHVLDVIVLFNQ-GIDEVILKGTGREISKAVDVYNSLKDRLGDGVQLVNVQTGS--------EV---   69 (86)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHHT-TCCEEEEEEETTHHHHHHHHHHHHHHHHGGGEEEEEEEEEE--------EE---
T ss_pred             CceEEEEcCCchHHHHHHHHHHHHC-CCCEEEEEEechhhHHHHHHHHHHHHhccCCeEEEEEEecc--------cc---
Confidence            5999999999999999999999985 79999999999999999999999999999999999876533        11   


Q ss_pred             cceeeEEeeEEEEEEecC
Q 025488           98 PVEMTRHVSMISITFSTR  115 (252)
Q Consensus        98 ~v~~~R~Vs~I~ItLSk~  115 (252)
                        ...|+||+|+|+|++.
T Consensus        70 --~~~r~VS~IeI~l~k~   85 (86)
T d2bkyx1          70 --RDRRRISYILLRLKRV   85 (86)
T ss_dssp             --ETTEEEEEEEEEEEEC
T ss_pred             --CCceEEEEEEEEEEec
Confidence              3478999999999873

>d1vm0a_ d.68.6.2 (A:) Hypothetical protein At2g34160 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: AlbA-like
family: Hypothetical protein At2g34160
domain: Hypothetical protein At2g34160
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.79  E-value=3.2e-19  Score=138.55  Aligned_cols=88  Identities=24%  Similarity=0.352  Sum_probs=74.7

Q ss_pred             CCCeEEEcC-CCchhHHHHHHHHHHhhcCCCEEEEEEcchhHHHHHHHHHHHHHhcCCCeeEeEEEEEEeeeccccccCC
Q 025488           17 NENEIRITT-QGAIRNYITYATTLLQEKHAKEIVLKAMGQAINKTVAIAEIIKKRIPQLHQDTAISSVSITDTWEPIEEG   95 (252)
Q Consensus        17 ~~NeIrVt~-~~~i~nyV~~A~~lL~~k~~~~VvIkg~G~AIsKAV~vAEILKrRi~gLhQit~I~s~~i~D~~EP~eEg   95 (252)
                      .+|+|+|++ +.|+++||.+|+.||++.  ++|+|+|+|+||++||+|||+||++...+|+.++|++.++.+.       
T Consensus         1 k~n~i~vs~~KkP~~~YV~~a~~~l~~~--~eV~l~a~G~AI~~aV~vaeil~~r~~~~i~~I~t~s~~~~~~-------   71 (99)
T d1vm0a_           1 KKNRIQVSNTKKPLFFYVNLAKRYMQQY--NDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSIVDIKDD-------   71 (99)
T ss_dssp             CTTEEECCCTTSCHHHHHHHHHHHHHHH--SEEEEEEEGGGHHHHHHHHHHHHHTTSEEEEEEEEEEEEEC---------
T ss_pred             CCcEEEEEcCCCcHHHHHHHHHHHhccC--CeEEEEecHHHHHHHHHHHHHHHhcCceEEEEEEeeeEEeecC-------
Confidence            379999997 667999999999999864  7999999999999999999999999887889899999888542       


Q ss_pred             CccceeeEEeeEEEEEEecC
Q 025488           96 LVPVEMTRHVSMISITFSTR  115 (252)
Q Consensus        96 ld~v~~~R~Vs~I~ItLSk~  115 (252)
                        .-..+++||.|+|.|++.
T Consensus        72 --~~gr~~~vs~IEI~L~K~   89 (99)
T d1vm0a_          72 --ARGRPVQKAKIEITLVKS   89 (99)
T ss_dssp             ------CEEEEEEEEEEEEC
T ss_pred             --CCCcccccceEEEEEeeC
Confidence              113478999999999984