Citrus Sinensis ID: 025504

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
ccccccccccccccccEEEEEcccccccHHHHHHHHHHHHcccccccccccccccEEccccccccccccccccccccccccEEEEEEccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHccccEEEEEcccccccHHHHHHHHcccEEEEEEccccccccccccccEEEEEEccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHEEEccccccccHHHHHHHHHHHHHHcccccc
ccccccccccccccccEEEEEcccccHHHHHHHHHHHHHHHccccccccccccccEEccccEccccccccccccccccccccEEEEEcccccccHHHHHHHHHHcccccEEEccccccccccccccccEEHHHHHcccEEEEcccccccccHHHHHHHHHccccEEEEccccccHHHcccHHHEEEEEcHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHccc
misakhnfwnrtegadhflvachdwapaeTRIIMANCIRALCnsdvkqgfvfgkdvslpetnvlspqnplwaiggkpasQRSILAFFAGSMHGYLRPILLhhwenkdpdmkifgqmpkakgrgkrkgktDYIQHMksskycicakgyevhspRVVEAIFYECvpviisdnfvppffeiLNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHflwhprpvkydIFHMILHSIWYNRVFLARAR
MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGqmpkakgrgkrkgKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPkakgrgkrkgkTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
******NFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKD****I******************YIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLA***
MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFL****
MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMP*************YIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHSIWYNRVFLARAR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q9FFN2518 Probable glycosyltransfer no no 0.936 0.455 0.473 9e-64
Q3E7Q9480 Probable glycosyltransfer no no 0.948 0.497 0.442 1e-59
Q9SSE8470 Probable glycosyltransfer no no 0.932 0.5 0.444 3e-58
Q9LFP3480 Probable glycosyltransfer no no 0.928 0.487 0.430 8e-57
Q3E9A4466 Probable glycosyltransfer no no 0.948 0.512 0.426 1e-55
Q94AA9500 Xylogalacturonan beta-1,3 no no 0.924 0.466 0.449 2e-55
Q3EAR7470 Probable glycosyltransfer no no 0.932 0.5 0.412 8e-53
Q9FZJ1412 Probable beta-1,4-xylosyl no no 0.912 0.558 0.316 1e-26
Q33AH8417 Probable glucuronosyltran no no 0.908 0.549 0.314 3e-26
Q6H4N0434 Probable glucuronosyltran no no 0.908 0.527 0.310 8e-26
>sp|Q9FFN2|GLYT3_ARATH Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2 Back     alignment and function desciption
 Score =  243 bits (620), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 118/249 (47%), Positives = 164/249 (65%), Gaps = 13/249 (5%)

Query: 1   MISAKHNFWNRTEGADHFLVACHDWAPAETRI---IMANCIRALCNSDVKQGFVFGKDVS 57
           ++  K+ +WNR+ GADHF+++CHDW P  +     +  N IRALCN++  + F   KDVS
Sbjct: 273 LVGDKYPYWNRSIGADHFILSCHDWGPEASFSHPHLGHNSIRALCNANTSERFKPRKDVS 332

Query: 58  LPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMP 117
           +PE N L   +    +GG   S R ILAFFAG +HG +RP+LL HWENKD D+++   +P
Sbjct: 333 IPEIN-LRTGSLTGLVGGPSPSSRPILAFFAGGVHGPVRPVLLQHWENKDNDIRVHKYLP 391

Query: 118 KAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFE 177
           +          T Y   M++SK+CIC  GYEV SPR+VEA++  CVPV+I+  +VPPF +
Sbjct: 392 RG---------TSYSDMMRNSKFCICPSGYEVASPRIVEALYSGCVPVLINSGYVPPFSD 442

Query: 178 ILNWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMI 237
           +LNW SF+V V   DIPNLK IL SIS ++Y +M   V KV++HF  +    ++D+FHMI
Sbjct: 443 VLNWRSFSVIVSVEDIPNLKTILTSISPRQYLRMYRRVLKVRRHFEVNSPAKRFDVFHMI 502

Query: 238 LHSIWYNRV 246
           LHSIW  R+
Sbjct: 503 LHSIWVRRL 511
May be involved in cell wall biosynthesis.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 4EC: .EC: -EC: .EC: -
>sp|Q3E7Q9|GLYT6_ARATH Probable glycosyltransferase At5g25310 OS=Arabidopsis thaliana GN=At5g25310 PE=3 SV=2 Back     alignment and function description
>sp|Q9SSE8|GLYT1_ARATH Probable glycosyltransferase At3g07620 OS=Arabidopsis thaliana GN=At3g07620 PE=3 SV=1 Back     alignment and function description
>sp|Q9LFP3|GLYT4_ARATH Probable glycosyltransferase At5g11130 OS=Arabidopsis thaliana GN=At5g11120/At5g11130 PE=3 SV=2 Back     alignment and function description
>sp|Q3E9A4|GLYT5_ARATH Probable glycosyltransferase At5g20260 OS=Arabidopsis thaliana GN=At5g20260 PE=3 SV=3 Back     alignment and function description
>sp|Q94AA9|XGD1_ARATH Xylogalacturonan beta-1,3-xylosyltransferase OS=Arabidopsis thaliana GN=XGD1 PE=1 SV=2 Back     alignment and function description
>sp|Q3EAR7|GLYT2_ARATH Probable glycosyltransferase At3g42180 OS=Arabidopsis thaliana GN=At3g42180 PE=2 SV=2 Back     alignment and function description
>sp|Q9FZJ1|IRX10_ARATH Probable beta-1,4-xylosyltransferase IRX10 OS=Arabidopsis thaliana GN=IRX10 PE=2 SV=1 Back     alignment and function description
>sp|Q33AH8|GT101_ORYSJ Probable glucuronosyltransferase GUT1 OS=Oryza sativa subsp. japonica GN=GUT1 PE=2 SV=2 Back     alignment and function description
>sp|Q6H4N0|GT21_ORYSJ Probable glucuronosyltransferase Os02g0520750 OS=Oryza sativa subsp. japonica GN=Os02g0520750 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
224142972 398 predicted protein [Populus trichocarpa] 0.984 0.623 0.809 1e-119
224092294 471 predicted protein [Populus trichocarpa] 0.984 0.526 0.789 1e-117
356518346 633 PREDICTED: probable glycosyltransferase 0.972 0.387 0.785 1e-116
225429942 675 PREDICTED: probable glycosyltransferase 0.980 0.365 0.777 1e-116
356518344 637 PREDICTED: probable glycosyltransferase 0.976 0.386 0.769 1e-115
356563757 645 PREDICTED: probable glycosyltransferase 0.976 0.381 0.757 1e-114
15233924 593 Exostosin family protein [Arabidopsis th 0.956 0.406 0.745 1e-111
297802718 583 exostosin family protein [Arabidopsis ly 0.956 0.413 0.737 1e-111
26451681270 unknown protein [Arabidopsis thaliana] 0.956 0.892 0.745 1e-109
449462352 684 PREDICTED: probable glycosyltransferase 0.952 0.350 0.756 1e-108
>gi|224142972|ref|XP_002324801.1| predicted protein [Populus trichocarpa] gi|222866235|gb|EEF03366.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  432 bits (1111), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 204/252 (80%), Positives = 222/252 (88%), Gaps = 4/252 (1%)

Query: 1   MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPE 60
           MISAK+ FWNRT GADHFLVACHDWAP ETR  MANCIRALCNSD K GFVFGKD +LPE
Sbjct: 151 MISAKYPFWNRTRGADHFLVACHDWAPTETRQHMANCIRALCNSDAKGGFVFGKDAALPE 210

Query: 61  TNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAK 120
           T V +PQN L  +GGKPAS+RSILAFFAGSMHGYLRPILL HW NKDPD+K+FG++PK K
Sbjct: 211 TTVRTPQNLLRDLGGKPASKRSILAFFAGSMHGYLRPILLQHWGNKDPDVKVFGKLPKVK 270

Query: 121 GRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEILN 180
           GRGK     +Y Q+MKSSKYCICAKG+EV+SPRVVEAIFYECVPVIISDNFVPPFFE+LN
Sbjct: 271 GRGK----MNYPQYMKSSKYCICAKGFEVNSPRVVEAIFYECVPVIISDNFVPPFFEVLN 326

Query: 181 WESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILHS 240
           WESFAVFVLE+DIPNLKNILLSI E +YR+MQM VKKVQQHFLWH RPVKYDIFHMILHS
Sbjct: 327 WESFAVFVLEKDIPNLKNILLSIPENKYREMQMRVKKVQQHFLWHARPVKYDIFHMILHS 386

Query: 241 IWYNRVFLARAR 252
           +WYNRVF    R
Sbjct: 387 VWYNRVFQVHPR 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224092294|ref|XP_002309547.1| predicted protein [Populus trichocarpa] gi|222855523|gb|EEE93070.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356518346|ref|XP_003527840.1| PREDICTED: probable glycosyltransferase At5g03795-like [Glycine max] Back     alignment and taxonomy information
>gi|225429942|ref|XP_002281263.1| PREDICTED: probable glycosyltransferase At5g03795 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356518344|ref|XP_003527839.1| PREDICTED: probable glycosyltransferase At5g03795-like [Glycine max] Back     alignment and taxonomy information
>gi|356563757|ref|XP_003550126.1| PREDICTED: probable glycosyltransferase At5g03795 [Glycine max] Back     alignment and taxonomy information
>gi|15233924|ref|NP_195005.1| Exostosin family protein [Arabidopsis thaliana] gi|3063691|emb|CAA18582.1| putative protein [Arabidopsis thaliana] gi|7270226|emb|CAB79996.1| putative protein [Arabidopsis thaliana] gi|332660719|gb|AEE86119.1| Exostosin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297802718|ref|XP_002869243.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] gi|297315079|gb|EFH45502.1| exostosin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|26451681|dbj|BAC42936.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449462352|ref|XP_004148905.1| PREDICTED: probable glycosyltransferase At5g25310-like [Cucumis sativus] gi|449523501|ref|XP_004168762.1| PREDICTED: LOW QUALITY PROTEIN: probable glycosyltransferase At5g25310-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:2125687593 AT4G32790 "AT4G32790" [Arabido 0.956 0.406 0.729 2.3e-101
TAIR|locus:2145254654 AT5G25820 "AT5G25820" [Arabido 0.952 0.366 0.729 1.2e-97
TAIR|locus:2144231546 AT5G11610 "AT5G11610" [Arabido 0.940 0.434 0.634 8.2e-83
TAIR|locus:2152632547 AT5G37000 "AT5G37000" [Arabido 0.884 0.407 0.649 2.3e-78
TAIR|locus:1009023450518 AT5G03795 [Arabidopsis thalian 0.936 0.455 0.473 8.1e-60
TAIR|locus:2091122470 AT3G07620 "AT3G07620" [Arabido 0.932 0.5 0.444 5.3e-56
TAIR|locus:2145472480 AT5G25310 "AT5G25310" [Arabido 0.948 0.497 0.438 2.9e-55
TAIR|locus:2145924500 XGD1 "AT5G33290" [Arabidopsis 0.936 0.472 0.442 1e-52
TAIR|locus:2100814470 AT3G42180 "AT3G42180" [Arabido 0.928 0.497 0.414 6.5e-51
TAIR|locus:2120933425 AT4G38040 "AT4G38040" [Arabido 0.908 0.538 0.400 1.9e-42
TAIR|locus:2125687 AT4G32790 "AT4G32790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1005 (358.8 bits), Expect = 2.3e-101, P = 2.3e-101
 Identities = 181/248 (72%), Positives = 214/248 (86%)

Query:     1 MISAKHNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGFVFGKDVSLPE 60
             MIS+K++FWN+T G+DHFLVACHDWAP+ETR  MA CIRALCNSDV +GFVFGKDV+LPE
Sbjct:   350 MISSKYSFWNKTGGSDHFLVACHDWAPSETRQYMAKCIRALCNSDVSEGFVFGKDVALPE 409

Query:    61 TNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWE-NKDPDMKIFGQMPXX 119
             T +L P+ PL A+GGKP SQR ILAFFAG MHGYLRP+LL +W  N+DPDMKIF ++P  
Sbjct:   410 TTILVPRRPLRALGGKPVSQRQILAFFAGGMHGYLRPLLLQNWGGNRDPDMKIFSEIPKS 469

Query:   120 XXXXXXXXXTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPPFFEIL 179
                        Y+++MKSSKYCIC KG+EV+SPRVVEA+FYECVPVIISDNFVPPFFE+L
Sbjct:   470 KGKKS------YMEYMKSSKYCICPKGHEVNSPRVVEALFYECVPVIISDNFVPPFFEVL 523

Query:   180 NWESFAVFVLERDIPNLKNILLSISEKRYRKMQMMVKKVQQHFLWHPRPVKYDIFHMILH 239
             NWESFAVFVLE+DIP+LKNIL+SI+E+RYR+MQM VK VQ+HFLWH +P ++DIFHMILH
Sbjct:   524 NWESFAVFVLEKDIPDLKNILVSITEERYREMQMRVKMVQKHFLWHSKPERFDIFHMILH 583

Query:   240 SIWYNRVF 247
             SIWYNRVF
Sbjct:   584 SIWYNRVF 591
GO:0003824 "catalytic activity" evidence=ISS
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0016020 "membrane" evidence=IEA;ISS
TAIR|locus:2145254 AT5G25820 "AT5G25820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144231 AT5G11610 "AT5G11610" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2152632 AT5G37000 "AT5G37000" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:1009023450 AT5G03795 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091122 AT3G07620 "AT3G07620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145472 AT5G25310 "AT5G25310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2145924 XGD1 "AT5G33290" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2100814 AT3G42180 "AT3G42180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120933 AT4G38040 "AT4G38040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
pfam03016292 pfam03016, Exostosin, Exostosin family 6e-52
>gnl|CDD|217320 pfam03016, Exostosin, Exostosin family Back     alignment and domain information 
 Score =  170 bits (432), Expect = 6e-52
 Identities = 63/216 (29%), Positives = 98/216 (45%), Gaps = 22/216 (10%)

Query: 1   MISAKHNFWNRTEGADHFLVACHDW---APAETRIIMANCIRALCNSD--VKQGFVFGKD 55
                  +WNR+ G DH +V  H +   A      +  N I A+       +  F  G D
Sbjct: 86  EWLESLPYWNRSGGRDHIIVNSHPFGGSAFDRLPALNNNTILAVLAGGGFSEDQFRPGFD 145

Query: 56  VSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMH--------GYLRPILLHHWENKD 107
           V LP     +         G P S+R  L FFAG             +R +L+   +N  
Sbjct: 146 VPLPAYFHPNS-VDDLESDGMPPSKRKTLLFFAGGPRPAGKGALANAIRDLLIEECKN-S 203

Query: 108 PDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVII 167
           PD +        +G        +Y++ ++SS++C+   G    SPR+ +A+   C+PVII
Sbjct: 204 PDFQC-------EGNQSCGNPENYMELLRSSRFCLVPPGDTPTSPRLFDALRAGCIPVII 256

Query: 168 SDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI 203
           SD +  PF ++++W  F+V V E DIP+L  IL +I
Sbjct: 257 SDGWELPFEDVIDWSKFSVRVPENDIPSLPEILRAI 292

The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. Length = 292

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
KOG1021464 consensus Acetylglucosaminyltransferase EXT1/exost 100.0
PF03016302 Exostosin: Exostosin family; InterPro: IPR004263 H 100.0
KOG2264 907 consensus Exostosin EXT1L [Signal transduction mec 99.94
KOG1022 691 consensus Acetylglucosaminyltransferase EXT2/exost 99.76
PF00852349 Glyco_transf_10: Glycosyltransferase family 10 (fu 98.12
cd03801374 GT1_YqgM_like This family is most closely related 97.56
cd03814364 GT1_like_2 This family is most closely related to 97.52
PLN02871465 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase 97.46
cd03794394 GT1_wbuB_like This family is most closely related 97.33
cd03820348 GT1_amsD_like This family is most closely related 97.3
cd03821375 GT1_Bme6_like This family is most closely related 97.21
PF00534172 Glycos_transf_1: Glycosyl transferases group 1; In 97.17
cd03818396 GT1_ExpC_like This family is most closely related 97.16
KOG2619372 consensus Fucosyltransferase [Carbohydrate transpo 97.11
cd03822366 GT1_ecORF704_like This family is most closely rela 97.11
cd05844367 GT1_like_7 Glycosyltransferases catalyze the trans 97.01
cd04962371 GT1_like_5 This family is most closely related to 96.99
cd03809365 GT1_mtfB_like This family is most closely related 96.93
TIGR03449405 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-ino 96.9
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 96.89
PRK15427406 colanic acid biosynthesis glycosyltransferase WcaL 96.83
PRK10307412 putative glycosyl transferase; Provisional 96.74
cd03799355 GT1_amsK_like This is a family of GT1 glycosyltran 96.72
cd03817374 GT1_UGDG_like This family is most closely related 96.68
cd03798377 GT1_wlbH_like This family is most closely related 96.67
cd04951360 GT1_WbdM_like This family is most closely related 96.63
cd03804351 GT1_wbaZ_like This family is most closely related 96.62
cd03819355 GT1_WavL_like This family is most closely related 96.58
cd03823359 GT1_ExpE7_like This family is most closely related 96.55
PRK09814333 beta-1,6-galactofuranosyltransferase; Provisional 96.54
cd03811353 GT1_WabH_like This family is most closely related 96.51
cd03808359 GT1_cap1E_like This family is most closely related 96.5
cd03800398 GT1_Sucrose_synthase This family is most closely r 96.49
cd03806419 GT1_ALG11_like This family is most closely related 96.42
cd03805392 GT1_ALG2_like This family is most closely related 96.37
cd03807365 GT1_WbnK_like This family is most closely related 96.33
cd03795357 GT1_like_4 This family is most closely related to 96.26
TIGR02095473 glgA glycogen/starch synthases, ADP-glucose type. 96.11
PRK15484380 lipopolysaccharide 1,2-N-acetylglucosaminetransfer 95.91
cd03825365 GT1_wcfI_like This family is most closely related 95.82
cd03802335 GT1_AviGT4_like This family is most closely relate 95.82
cd03796398 GT1_PIG-A_like This family is most closely related 95.71
TIGR02149388 glgA_Coryne glycogen synthase, Corynebacterium fam 95.7
PRK14098489 glycogen synthase; Provisional 95.69
cd04955363 GT1_like_6 This family is most closely related to 95.67
PRK00654466 glgA glycogen synthase; Provisional 95.49
cd03816415 GT1_ALG1_like This family is most closely related 95.36
PRK14099485 glycogen synthase; Provisional 95.29
PF1352492 Glyco_trans_1_2: Glycosyl transferases group 1 95.18
cd04949372 GT1_gtfA_like This family is most closely related 95.14
PRK09922359 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D 95.14
cd03791476 GT1_Glycogen_synthase_DULL1_like This family is mo 94.85
PLN02949463 transferase, transferring glycosyl groups 94.74
PF13692135 Glyco_trans_1_4: Glycosyl transferases group 1; PD 94.63
TIGR02472439 sucr_P_syn_N sucrose-phosphate synthase, putative, 93.89
cd04946407 GT1_AmsK_like This family is most closely related 93.88
cd03792372 GT1_Trehalose_phosphorylase Trehalose phosphorylas 93.85
cd03812358 GT1_CapH_like This family is most closely related 93.8
TIGR03087397 stp1 sugar transferase, PEP-CTERM/EpsH1 system ass 93.78
KOG1387465 consensus Glycosyltransferase [Cell wall/membrane/ 93.6
PHA01633335 putative glycosyl transferase group 1 93.55
PHA01630331 putative group 1 glycosyl transferase 93.02
PRK15490578 Vi polysaccharide biosynthesis protein TviE; Provi 92.87
smart00672256 CAP10 Putative lipopolysaccharide-modifying enzyme 92.63
cd03813475 GT1_like_3 This family is most closely related to 92.27
cd04950373 GT1_like_1 Glycosyltransferases catalyze the trans 91.41
TIGR02918500 accessory Sec system glycosylation protein GtfA. M 91.09
TIGR02468 1050 sucrsPsyn_pln sucrose phosphate synthase/possible 90.51
TIGR00236365 wecB UDP-N-acetylglucosamine 2-epimerase. Epimeras 89.9
cd03793590 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, 89.25
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 88.29
PLN02939977 transferase, transferring glycosyl groups 88.21
TIGR02470784 sucr_synth sucrose synthase. This model represents 87.64
PRK13608391 diacylglycerol glucosyltransferase; Provisional 86.22
PRK15179694 Vi polysaccharide biosynthesis protein TviE; Provi 85.33
PRK10125405 putative glycosyl transferase; Provisional 85.24
PLN02605382 monogalactosyldiacylglycerol synthase 84.93
PF05686395 Glyco_transf_90: Glycosyl transferase family 90; I 84.39
cd01635229 Glycosyltransferase_GTB_type Glycosyltransferases 82.06
PLN00142815 sucrose synthase 81.62
cd03788460 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a 81.42
>KOG1021 consensus Acetylglucosaminyltransferase EXT1/exostosin 1 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] Back     alignment and domain information 
Probab=100.00  E-value=2.7e-50  Score=382.46  Aligned_cols=245  Identities=44%  Similarity=0.787  Sum_probs=211.6

Q ss_pred             cccCCccccCCCCCcEEEEeccCCCchhHHHH---Hhhhhhhhhc-CCCCCCcccC-CccccCCccccCCCCccc--ccC
Q 025504            2 ISAKHNFWNRTEGADHFLVACHDWAPAETRII---MANCIRALCN-SDVKQGFVFG-KDVSLPETNVLSPQNPLW--AIG   74 (252)
Q Consensus         2 i~~~~PyWnr~~G~DH~~v~~~d~~~~~~~~~---~~n~~~~l~~-~~~~~~~rp~-~DvviP~~~~~~p~~~~~--~~~   74 (252)
                      +.+++|||||++|+||||+.+|+|+.......   ..+.+..+++ ++.+..+.+. +||+||+.+..||..+..  ...
T Consensus       203 ~~~~~p~W~Rs~G~DH~~v~~~~~~~~~~~~~~~~~~~~i~~~~n~a~ls~~~~~~~~dv~iP~~~~~~~~~~~~~~~~~  282 (464)
T KOG1021|consen  203 LLSKQPYWNRSSGRDHFFVACHDWGDFRRRSDWGASISLIPEFCNGALLSLEFFPWNKDVAIPYPTIPHPLSPPENSWQG  282 (464)
T ss_pred             HHhcCchhhccCCCceEEEeCCcchheeeccchhhHHHHHHhhCCcceeecccccCCCcccCCCccCcCccCcccccccc
Confidence            35789999999999999999999997765432   2334444555 4566778888 999999998888766442  233


Q ss_pred             CCCCCCCceEEEeecc-CCCCchHHHHHHhhcCCCCcEEeecCCCCCCCCcccCcchHHHhhccceEEEeecCCCCCChh
Q 025504           75 GKPASQRSILAFFAGS-MHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPR  153 (252)
Q Consensus        75 ~~~~~~R~~L~~F~G~-~~g~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCL~p~G~~~~s~r  153 (252)
                      .....+|++|++|+|+ .+|.+|+.|.++|++ +++......|+...  +.+.+...|.+.|++|+|||||+|++++|.|
T Consensus       283 ~~~~~~R~~L~~F~G~~~~~~iR~~L~~~~~~-~~~~~~~~~~~~g~--~~~~~~~~y~~~m~~S~FCL~p~Gd~~ts~R  359 (464)
T KOG1021|consen  283 GVPFSNRPILAFFAGAPAGGQIRSILLDLWKK-DPDTEVFVNCPRGK--VSCDRPLNYMEGMQDSKFCLCPPGDTPTSPR  359 (464)
T ss_pred             CCCCCCCceEEEEeccccCCcHHHHHHHHhhc-CcCccccccCCCCc--cccCCcchHHHHhhcCeEEECCCCCCcccHh
Confidence            4566899999999999 899999999999998 55666667787543  3345788999999999999999999999999


Q ss_pred             HHHHhhcCceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhH-HHHHhcCCHHHHHHHHHHHHH-HhhhceeCC--CCC
Q 025504          154 VVEAIFYECVPVIISDNFVPPFFEILNWESFAVFVLERDIPNL-KNILLSISEKRYRKMQMMVKK-VQQHFLWHP--RPV  229 (252)
Q Consensus       154 l~eal~~GCIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l-~~~L~~i~~~~~~~m~~~~~~-~~~~f~~~~--~~~  229 (252)
                      ++|||.+|||||||+|++.+||++++||++|||+|++++++++ .++|.+++.+++.+||+++.+ +.++|.+..  +.+
T Consensus       360 ~fdai~~gCvPViisd~~~lpf~~~~d~~~fSV~v~~~~v~~~~~~iL~~i~~~~~~~m~~~v~~~v~r~~~~~~~~~~~  439 (464)
T KOG1021|consen  360 LFDAIVSGCVPVIISDGIQLPFGDVLDWTEFSVFVPEKDVPELIKNILLSIPEEEVLRMRENVIRLVPRHFLKKPPGPPK  439 (464)
T ss_pred             HHHHHHhCCccEEEcCCcccCcCCCccceEEEEEEEHHHhhhHHHHHHHhcCHHHHHHHHHHHHHHHHhhEEeCCCCCCC
Confidence            9999999999999999999999999999999999999999988 999999999999999999994 999999998  788


Q ss_pred             CcCHHHHHHHHHHHhhhhcc
Q 025504          230 KYDIFHMILHSIWYNRVFLA  249 (252)
Q Consensus       230 ~~daf~~~~~~l~~r~~~~~  249 (252)
                      .+||||++++++|.|+++..
T Consensus       440 ~~da~~~~~~~v~~r~~~~~  459 (464)
T KOG1021|consen  440 RGDAFHMILHSLWRRLHKLR  459 (464)
T ss_pred             cchhHHHHHhhhhhcccccc
Confidence            99999999999999999876

>PF03016 Exostosin: Exostosin family; InterPro: IPR004263 Hereditary multiple exostoses (EXT) is an autosomal dominant disorder that is characterised by the appearance of multiple outgrowths of the long bones (exostoses) at their epiphyses [] Back     alignment and domain information
>KOG2264 consensus Exostosin EXT1L [Signal transduction mechanisms] Back     alignment and domain information
>KOG1022 consensus Acetylglucosaminyltransferase EXT2/exostosin 2 [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Extracellular structures] Back     alignment and domain information
>PF00852 Glyco_transf_10: Glycosyltransferase family 10 (fucosyltransferase); InterPro: IPR001503 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known Back     alignment and domain information
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase Back     alignment and domain information
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF00534 Glycos_transf_1: Glycosyl transferases group 1; InterPro: IPR001296 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>KOG2619 consensus Fucosyltransferase [Carbohydrate transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd05844 GT1_like_7 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional Back     alignment and domain information
>PRK10307 putative glycosyl transferase; Provisional Back     alignment and domain information
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria Back     alignment and domain information
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional Back     alignment and domain information
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03806 GT1_ALG11_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type Back     alignment and domain information
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional Back     alignment and domain information
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family Back     alignment and domain information
>PRK14098 glycogen synthase; Provisional Back     alignment and domain information
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK00654 glgA glycogen synthase; Provisional Back     alignment and domain information
>cd03816 GT1_ALG1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PRK14099 glycogen synthase; Provisional Back     alignment and domain information
>PF13524 Glyco_trans_1_2: Glycosyl transferases group 1 Back     alignment and domain information
>cd04949 GT1_gtfA_like This family is most closely related to the GT1 family of glycosyltransferases and is named after gtfA in Streptococcus gordonii, where it plays a role in the O-linked glycosylation of GspB, a cell surface glycoprotein involved in platelet binding Back     alignment and domain information
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional Back     alignment and domain information
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PLN02949 transferase, transferring glycosyl groups Back     alignment and domain information
>PF13692 Glyco_trans_1_4: Glycosyl transferases group 1; PDB: 3OY2_A 3OY7_B 2Q6V_A 2HY7_A 3CV3_A 3CUY_A Back     alignment and domain information
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain Back     alignment and domain information
>cd04946 GT1_AmsK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose Back     alignment and domain information
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR03087 stp1 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis] Back     alignment and domain information
>PHA01633 putative glycosyl transferase group 1 Back     alignment and domain information
>PHA01630 putative group 1 glycosyl transferase Back     alignment and domain information
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>smart00672 CAP10 Putative lipopolysaccharide-modifying enzyme Back     alignment and domain information
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>cd04950 GT1_like_1 Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>TIGR02918 accessory Sec system glycosylation protein GtfA Back     alignment and domain information
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant Back     alignment and domain information
>TIGR00236 wecB UDP-N-acetylglucosamine 2-epimerase Back     alignment and domain information
>cd03793 GT1_Glycogen_synthase_GSY2_like Glycogen synthase, which is most closely related to the GT1 family of glycosyltransferases, catalyzes the transfer of a glucose molecule from UDP-glucose to a terminal branch of a glycogen molecule, a rate-limit step of glycogen biosynthesis Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PLN02939 transferase, transferring glycosyl groups Back     alignment and domain information
>TIGR02470 sucr_synth sucrose synthase Back     alignment and domain information
>PRK13608 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional Back     alignment and domain information
>PRK10125 putative glycosyl transferase; Provisional Back     alignment and domain information
>PLN02605 monogalactosyldiacylglycerol synthase Back     alignment and domain information
>PF05686 Glyco_transf_90: Glycosyl transferase family 90; InterPro: IPR006598 Cryptococcus neoformans is a pathogenic fungus which most commonly affects the central nervous system and causes fatal meningoencephalitis primarily in patients with AIDS Back     alignment and domain information
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds Back     alignment and domain information
>PLN00142 sucrose synthase Back     alignment and domain information
>cd03788 GT1_TPS Trehalose-6-Phosphate Synthase (TPS) is a glycosyltransferase that catalyses the synthesis of alpha,alpha-1,1-trehalose-6-phosphate from glucose-6-phosphate using a UDP-glucose donor Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 43/287 (14%), Positives = 82/287 (28%), Gaps = 95/287 (33%)

Query: 1   MISAK-HNFWNRTEGADHFLVACHDWAPAETRIIMANCIRALCNSDVKQGF----VFGKD 55
           +I+    +     +   H           +   I+ + +  L  ++ ++ F    VF   
Sbjct: 332 IIAESIRDGLATWDNWKHVNCD-------KLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384

Query: 56  VSLPETNVLSPQNPLWAIGGKPASQRSILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQ 115
             +P   +LS    +W      +    ++      +H Y    L+     K P       
Sbjct: 385 AHIPT-ILLS---LIWF-DVIKSDVMVVVN----KLHKYS---LV----EKQP------- 421

Query: 116 MPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYECVPVIISDNFVPP- 174
                     K  T  I  +           Y +H   +V+   Y       SD+ +PP 
Sbjct: 422 ----------KESTISIPSIYLELKVKLENEYALHR-SIVDH--YNIPKTFDSDDLIPPY 468

Query: 175 ----FF--------EILNWESFAVFV--------LERDI----------PNLKNILLSIS 204
               F+         I + E   +F         LE+ I           ++ N L  + 
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL- 527

Query: 205 EKRYRK--------MQMMVKKVQQHFLWHPRPVKY-----DIFHMIL 238
            K Y+          + +V  +   FL             D+  + L
Sbjct: 528 -KFYKPYICDNDPKYERLVNAI-LDFLPKIEENLICSKYTDLLRIAL 572

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
3qhp_A166 Type 1 capsular polysaccharide biosynthesis prote 98.24
2bfw_A200 GLGA glycogen synthase; glycosyltransferase family 97.62
3c48_A438 Predicted glycosyltransferases; retaining glycosyl 97.44
3okp_A394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 97.43
2gek_A406 Phosphatidylinositol mannosyltransferase (PIMA); G 97.32
2nzw_A371 Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {H 97.26
2jjm_A394 Glycosyl transferase, group 1 family protein; anth 97.19
2f9f_A177 First mannosyl transferase (WBAZ-1); alpha-beta pr 96.66
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 96.65
2r60_A499 Glycosyl transferase, group 1; rossmann-fold; 1.80 96.6
2iw1_A374 Lipopolysaccharide core biosynthesis protein RFAG; 96.56
2iuy_A342 Avigt4, glycosyltransferase; antibiotics, family G 96.37
3fro_A439 GLGA glycogen synthase; glycosyltransferase family 96.37
2qzs_A485 Glycogen synthase; glycosyl-transferase, GT-B fold 96.02
1rzu_A485 Glycogen synthase 1; glycosyl-transferase, GT-B fo 96.0
3rhz_A339 GTF3, nucleotide sugar synthetase-like protein; gl 95.84
2vsy_A568 XCC0866; transferase, glycosyl transferase, GT-B, 95.81
3oy2_A413 Glycosyltransferase B736L; rossmann fold, GDP-mann 95.42
2x0d_A413 WSAF; GT4 family, transferase; HET: MSE; 2.28A {Ge 95.06
2x6q_A416 Trehalose-synthase TRET; biosynthetic protein; 2.2 94.79
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 93.33
3vue_A536 GBSS-I, granule-bound starch synthase 1, chloropla 92.9
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 91.91
3s28_A816 Sucrose synthase 1; glycosyltransferase, sucrose m 90.78
1uqt_A482 Alpha, alpha-trehalose-phosphate synthase; glycosy 89.13
3nb0_A725 Glycogen [starch] synthase isoform 2; glycogen syn 85.79
2o6l_A170 UDP-glucuronosyltransferase 2B7; drug metabolism, 84.25
2hy7_A406 Glucuronosyltransferase GUMK; glycosyltransferases 81.82
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann fold, glycosyltransferase, transferase; 1.50A {Helicobacter pylori} Back     alignment and structure
Probab=98.24  E-value=1.3e-05  Score=63.30  Aligned_cols=129  Identities=15%  Similarity=0.126  Sum_probs=83.4

Q ss_pred             ceEEEeeccCCCCchHHHHHHhhcCCCCcEEeecCCCCCCCCcccCcchHHHhhccceEEEeecCCCCCChhHHHHhhcC
Q 025504           82 SILAFFAGSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGYEVHSPRVVEAIFYE  161 (252)
Q Consensus        82 ~~L~~F~G~~~g~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCL~p~G~~~~s~rl~eal~~G  161 (252)
                      ++-+.+.|.  |..+..+.+..+.....+.+ +..          ...+..+.++.+..++.|.-......-+.|||++|
T Consensus        32 ~~~l~i~G~--g~~~~~~~~~~~~~~~~v~~-g~~----------~~~~~~~~~~~adv~v~ps~~e~~~~~~~Eama~G   98 (166)
T 3qhp_A           32 DIVLLLKGK--GPDEKKIKLLAQKLGVKAEF-GFV----------NSNELLEILKTCTLYVHAANVESEAIACLEAISVG   98 (166)
T ss_dssp             GEEEEEECC--STTHHHHHHHHHHHTCEEEC-CCC----------CHHHHHHHHTTCSEEEECCCSCCCCHHHHHHHHTT
T ss_pred             CeEEEEEeC--CccHHHHHHHHHHcCCeEEE-eec----------CHHHHHHHHHhCCEEEECCcccCccHHHHHHHhcC
Confidence            566777774  44455555444332223333 332          25678899999999999986666678999999999


Q ss_pred             ceeEEecCCCCCCCCCCCCCCceEEEEcCCChhhHHHHHhcC--CHHHHHHHHHHHHHHhhhceeCC
Q 025504          162 CVPVIISDNFVPPFFEILNWESFAVFVLERDIPNLKNILLSI--SEKRYRKMQMMVKKVQQHFLWHP  226 (252)
Q Consensus       162 CIPVii~d~~~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i--~~~~~~~m~~~~~~~~~~f~~~~  226 (252)
                      |+|||..+..- ...+++.-...  .++..+..++.+.|..+  +++...+|.++.++..++|.|+.
T Consensus        99 ~vPvi~~~~~~-~~~~~~~~~~~--~~~~~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~s~~~  162 (166)
T 3qhp_A           99 IVPVIANSPLS-ATRQFALDERS--LFEPNNAKDLSAKIDWWLENKLERERMQNEYAKSALNYTLEN  162 (166)
T ss_dssp             CCEEEECCTTC-GGGGGCSSGGG--EECTTCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHC---
T ss_pred             CCcEEeeCCCC-chhhhccCCce--EEcCCCHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHCChhh
Confidence            99999944221 12233322333  56667777666555544  67888899999888778888764
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A* Back     alignment and structure
>2nzw_A Alpha1,3-fucosyltransferase; FUCT, GT 10; 1.90A {Helicobacter pylori} SCOP: c.87.1.11 PDB: 2nzx_A* 2nzy_A* Back     alignment and structure
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A* Back     alignment and structure
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8 Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A* Back     alignment and structure
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A* Back     alignment and structure
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A* Back     alignment and structure
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A* Back     alignment and structure
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A Back     alignment and structure
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A Back     alignment and structure
>3rhz_A GTF3, nucleotide sugar synthetase-like protein; glycosyltransferase, transferase; HET: UDP; 1.90A {Streptococcus parasanguinis} PDB: 3qkw_A* Back     alignment and structure
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus stearothermophilus} PDB: 2x0f_A* 2x0e_A* Back     alignment and structure
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A* Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>3vue_A GBSS-I, granule-bound starch synthase 1, chloroplastic/amyloplastic; rossmann fold, glycosyltransferase, transferase; 2.70A {Oryza sativa japonica group} PDB: 3vuf_A* Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar donar complex rossmann fold, GT-B fold, glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A {Arabidopsis thaliana} PDB: 3s27_A* 3s29_A* Back     alignment and structure
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase, transferase; HET: U2F; 2.0A {Escherichia coli} SCOP: c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A* Back     alignment and structure
>3nb0_A Glycogen [starch] synthase isoform 2; glycogen synthase, glucose-6-phosphate, yeast, allosteric AC transferase; HET: G6P; 2.41A {Saccharomyces cerevisiae} PDB: 3rt1_A* 3nch_A 3naz_A 3o3c_A* 3rsz_A* Back     alignment and structure
>2o6l_A UDP-glucuronosyltransferase 2B7; drug metabolism, rossman, MAD, enzyme, nucleotide binding, sugar,UDP-glucuronosyltransferase, UGT; 1.80A {Homo sapiens} Back     alignment and structure
>2hy7_A Glucuronosyltransferase GUMK; glycosyltransferases, xanthan, membrane-associated proteins; 1.90A {Xanthomonas campestris} PDB: 2q6v_A* 3cv3_A* 3cuy_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d2nzwa1349 Alpha1,3-fucosyltransferase FucT {Helicobacter pyl 97.74
d2bisa1437 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 96.86
d2bfwa1196 Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxI 96.61
d2f9fa1166 First mannosyl transferase WbaZ {Archaeoglobus ful 96.35
d1rzua_477 Glycogen synthase 1, GlgA {Agrobacterium tumefacie 96.03
d2iw1a1370 Lipopolysaccharide core biosynthesis protein RfaG 95.97
d1f0ka_351 Peptidoglycan biosynthesis glycosyltransferase Mur 87.33
d1uqta_456 Trehalose-6-phosphate synthase, OtsA {Escherichia 82.66
>d2nzwa1 c.87.1.11 (A:1-349) Alpha1,3-fucosyltransferase FucT {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: FucT-like
domain: Alpha1,3-fucosyltransferase FucT
species: Helicobacter pylori [TaxId: 210]

Probab=97.74  E-value=8.4e-05  Score=65.31  Aligned_cols=125  Identities=11%  Similarity=0.193  Sum_probs=85.1

Q ss_pred             CCCCceEEEee-ccCCCCchHHHHHHhhcCCCCcEEeecCCCCCCCCcccCcchHHHhhccceEEEeecCC---CCCChh
Q 025504           78 ASQRSILAFFA-GSMHGYLRPILLHHWENKDPDMKIFGQMPKAKGRGKRKGKTDYIQHMKSSKYCICAKGY---EVHSPR  153 (252)
Q Consensus        78 ~~~R~~L~~F~-G~~~g~~R~~L~~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~y~~~~~~S~FCL~p~G~---~~~s~r  153 (252)
                      ..+|+.++.|. +...+..|..+.+.+.+.. .|..+|.|-+..|.    ...+-.+.+++-+|+||..-.   +..|--
T Consensus       176 ~~~K~kFcs~v~Sn~~~~~R~~~~~~L~k~~-~Vd~~G~~~nn~~~----~~~~K~~~l~~ykF~l~~EN~~~~~YvTEK  250 (349)
T d2nzwa1         176 DPLKRGFASFVASNPNAPIRNAFYDALNSIE-PVTGGGSVRNTLGY----NVKNKNEFLSQYKFNLCFENTQGYGYVTEK  250 (349)
T ss_dssp             CTTSSEEEEECCSCCCCHHHHHHHHHHTTTS-CCEECSSTTCCSSS----CCSCHHHHHTTEEEEEEECSSCCTTCCCTH
T ss_pred             ccccCceEEEEEcCCCCchHHHHHHHHhccC-eecccCccccCCCC----chhhHHHHHhCCCeEEEECCcCCCCCcchH
Confidence            34566666655 4434568999998887653 67788888554321    233457889999999998644   456899


Q ss_pred             HHHHhhcCceeEEecCC-C--CCCCCCCCCCCceEEEEcCCChhhHHHHHhcCC--HHHHHHHHH
Q 025504          154 VVEAIFYECVPVIISDN-F--VPPFFEILNWESFAVFVLERDIPNLKNILLSIS--EKRYRKMQM  213 (252)
Q Consensus       154 l~eal~~GCIPVii~d~-~--~lPf~~~idw~~fsv~i~~~~~~~l~~~L~~i~--~~~~~~m~~  213 (252)
                      ++||+.+|||||..++. +  .+|=...|+..+|      ..+.++.+.|..++  ++.+.+|-.
T Consensus       251 i~da~~~g~iPIy~G~~~i~~~f~~~sfI~~~df------~s~~el~~~i~~l~~n~~~Y~~~~~  309 (349)
T d2nzwa1         251 IIDAYFSHTIPIYWGSPSVAKDFNPKSFVNVHDF------KNFDEAIDYIKYLHTHKNAYLDMLY  309 (349)
T ss_dssp             HHHHHHTTCEEEEESCTTGGGTSCGGGSEEGGGS------SSHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHhCCeEEEEECCCcHHHcCCCccEEEhhhC------CCHHHHHHHHHHHhcCHHHHHHHHh
Confidence            99999999999999973 2  2443334444443      35677888887775  555666654
>d2bisa1 c.87.1.8 (A:1-437) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2bfwa1 c.87.1.8 (A:218-413) Glycogen synthase 1, GlgA {Pyrococcus abyssi [TaxId: 29292]} Back     information, alignment and structure
>d2f9fa1 c.87.1.8 (A:2-167) First mannosyl transferase WbaZ {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2iw1a1 c.87.1.8 (A:2-371) Lipopolysaccharide core biosynthesis protein RfaG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f0ka_ c.87.1.2 (A:) Peptidoglycan biosynthesis glycosyltransferase MurG {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure