Citrus Sinensis ID: 025505

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPADGAANSSRNQTRWPMQTRNVLLMVVVTIAAAFFMVACHLPDSLVREDTLAGKSL
Secondary Structure (PSIPRED)
cccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHHHccHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHcccHHcccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHcccHHHHHHHHHcccccccHHHHcccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHccccccccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccc
Coil and Loop (DISEMBL)
MARLWPQLASIKNQRGETTmhllstdgdaetVRIFGEINRELclevdnssmiplhraaldGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHrkehlftwkdkegntvlHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLcnansqdsAFKEIGWIIQRAIAqqspqlpadgaanssrnqtrwpmqtRNVLLMVVVTIAAAFFMVAChlpdslvredtlagksl
Flexible Loop (DISEMBL)
MARLWPQLASIKNQRGETTMHllstdgdaetVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNhrkehlftwkdkegntvLHLATLNKLKQIVELLirensnrriMIRINtvnkegqtTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPADGAANSsrnqtrwpmQTRNVLLMVVVTIAAAFFMVACHLPDSLvredtlagksl
Low Complexity Region (SEG)
MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPADGAANSSRNQTRWPMQTRNVLLMVVVTIAAAFFMVACHLPDSLVREDTLAGKSL
Disordered region (IsUnstruct)
*********************LLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT****TALHLAV*******FEALVDEA*NHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIA********************WPMQTRNVLLMVVVTIAAAFFMVACHLPDSLV**********
Disordered Region (DISOPRED)
MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQ***********************TRNVLLMVVVTIAAAFFMVACHLPDSLVR*********
Disordered Region (DISEMBL)
MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQ****************QTRWPMQTRNVLLMVVVTIAAAFFMVACHLPDSLVREDTLAGKSL
Disordered Region (DISPRO)
MA**WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPADGAANSSRNQTRWPMQTRNVLLMVVVTIAAAFFMVACHLPDSLV**********
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPADGAANSSRNQTRWPMQTRNVLLMVVVTIAAAFFMVACHLPDSLVREDTLAGKSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q6AWW5	524	Ankyrin repeat-containing	no	no	0.603	0.290	0.271	3e-10
B2RXR6	993	Serine/threonine-protein	yes	no	0.634	0.161	0.277	1e-08
Q54KA7	986	Ankyrin repeat, PH and SE	yes	no	0.567	0.145	0.292	1e-08
Q9C7A2	590	Ankyrin repeat-containing	no	no	0.337	0.144	0.4	2e-08
Q9ZU96	532	Ankyrin repeat-containing	no	no	0.634	0.300	0.241	1e-07
Q8N8A2	993	Serine/threonine-protein	yes	no	0.603	0.153	0.258	5e-07
Q02989	1411	Alpha-latroinsectotoxin-L	N/A	no	0.527	0.094	0.271	7e-07
Q9Y2G4	727	Ankyrin repeat domain-con	no	no	0.547	0.189	0.305	1e-06
Q69ZU8	712	Ankyrin repeat domain-con	no	no	0.555	0.196	0.294	1e-06
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.567	0.072	0.261	5e-06

>sp|Q6AWW5|Y5262_ARATH Ankyrin repeat-containing protein At5g02620 OS=Arabidopsis thaliana GN=At5g02620 PE=1 SV=1

 Score = 65.5 bits (158), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 80/162 (49%), Gaps = 10/162 (6%)

Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           LA  K + G    H+ + +G+ + + +  E N EL    D+S    LH AA  G+ +++ 
Sbjct: 83  LAGTKAKNGFDAFHIAAKNGNLQVLDVLIEANPELSFTFDSSKTTALHTAASQGHGEIVC 142

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVL 127
            L+    +      SNG+TALH A +   +   + L++     +K  + T  DK+G T L
Sbjct: 143 FLLDKGVDLAAIARSNGKTALHSAARNGHTVIVKKLIE-----KKAGMVTRVDKKGQTAL 197

Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
           H+A   +  +IV++L+  + +      IN+ + +G T L + 
Sbjct: 198 HMAVKGQNTEIVDVLMEADGS-----LINSADNKGNTPLHIA 234

Arabidopsis thaliana (taxid: 3702)

>sp|B2RXR6|ANR44_MOUSE Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Mus musculus GN=Ankrd44 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/180 (27%), Positives = 78/180 (43%), Gaps = 20/180 (11%)

Query: 4   LWPQLASI--KNQRGETTMHLLSTDGDA----ETVRIFGEINRELCLEVDNSSMIPLHRA 57
           L  Q ASI  K+ RG T +H  +  G A    E ++I   ++ E C   DN    PLH A
Sbjct: 722 LLEQEASILCKDSRGRTPLHYAAARGHATWLNELLQI--ALSEEDCCLKDNQGYTPLHWA 779

Query: 58  ALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFT 117
             +GN + I  L+    +   K   N  T LH A+          L+          + +
Sbjct: 780 CYNGNENCIEVLLE--QKCFRKFIGNPFTPLHCAIINGHESCASLLLGAI----DPSIVS 833

Query: 118 WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSA 177
            +D +G T LH A      + ++LL+R ++      ++N V+  G+T L +   N Q  A
Sbjct: 834 CRDDKGRTTLHAAAFGDHAECLQLLLRHDA------QVNAVDNSGKTALMMAAENGQAGA 887

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Mus musculus (taxid: 10090)

>sp|Q54KA7|SECG_DICDI Ankyrin repeat, PH and SEC7 domain containing protein secG OS=Dictyostelium discoideum GN=secG PE=2 SV=1

 Score = 60.1 bits (144), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 72/157 (45%), Gaps = 14/157 (8%)

Query: 10  SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
           +IK++ G T +H  S +G +   ++  +    +C+ VD+    PLH+AA +G S  +  L
Sbjct: 362 NIKDEEGATPLHKASFNGHSSCAKLLVDKGAPICI-VDSQGATPLHKAAFNGRSKCLATL 420

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHL 129
           +    E LE   S G T LH A     SD    L+ +  N          D   +T LHL
Sbjct: 421 IRSGAE-LEVKDSQGGTPLHNAAYNGHSDCCRILLKKGAN------VNAVDTHSSTPLHL 473

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           A+    +  V++LI      +   RI+  N  G+T L
Sbjct: 474 ASAAGARDTVDVLI------QFKARIDAKNFAGKTPL 504

Dictyostelium discoideum (taxid: 44689)

>sp|Q9C7A2|Y3236_ARATH Ankyrin repeat-containing protein At3g12360 OS=Arabidopsis thaliana GN=At3g12360 PE=2 SV=1

 Score = 59.3 bits (142), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 5/90 (5%)

Query: 54  LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKE 113
           LH AA  G+ +VI+AL+S  P+   ++   G+TALH+AVK   S+  + L+D        
Sbjct: 236 LHLAARQGHVEVIKALLSKDPQLARRIDKKGQTALHMAVKGQSSEVVKLLLDA-----DP 290

Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
            +    DK  NT LH+AT  K  +IVELL+
Sbjct: 291 AIVMQPDKSCNTALHVATRKKRAEIVELLL 320

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZU96|Y2168_ARATH Ankyrin repeat-containing protein At2g01680 OS=Arabidopsis thaliana GN=At2g01680 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 76/170 (44%), Gaps = 10/170 (5%)

Query: 1   MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALD 60
           + RLWP+L  I +    + ++  +     E V    +++    + V  +    LH A   
Sbjct: 113 LLRLWPELCRICDASNTSPLYAAAVQDHLEIVNAMLDVDPSCAMIVRKNGKTSLHTAGRY 172

Query: 61  GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
           G   +++AL+      +      G+TALH+AVK    +  E ++          +   +D
Sbjct: 173 GLLRIVKALIEKDAAIVGVKDKKGQTALHMAVKGRSLEVVEEILQADYT-----ILNERD 227

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCN 170
           ++GNT LH+AT     QI  LL+   +     I +N +N + +T + L +
Sbjct: 228 RKGNTALHIATRKARPQITSLLLTFTA-----IEVNAINNQKETAMDLAD 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q8N8A2|ANR44_HUMAN Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Homo sapiens GN=ANKRD44 PE=1 SV=3

 Score = 54.7 bits (130), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 18/170 (10%)

Query: 12  KNQRGETTMHLLSTDGDA----ETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           K+ RG T +H  +  G A    E +++   ++ E C   DN    PLH A  +GN + I 
Sbjct: 732 KDSRGRTPLHYAAARGHATWLSELLQM--ALSEEDCCFKDNQGYTPLHWACYNGNENCIE 789

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVL 127
            L+    +   K   N  T LH A+     +    L+    +     + + +D +G T L
Sbjct: 790 VLLE--QKCFRKFIGNPFTPLHCAIINDHGNCASLLLGAIDS----SIVSCRDDKGRTPL 843

Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSA 177
           H A      + ++LL+R ++       +N V+  G+T L +   N Q  A
Sbjct: 844 HAAAFADHVECLQLLLRHSA------PVNAVDNSGKTALMMAAENGQAGA 887

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Homo sapiens (taxid: 9606)

>sp|Q02989|LITA_LATTR Alpha-latroinsectotoxin-Lt1a (Fragment) OS=Latrodectus tredecimguttatus PE=1 SV=1

 Score = 54.7 bits (130), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 64/140 (45%), Gaps = 7/140 (5%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
           K   G T +H  +  G A   R+      ++  E  NS M P+H A  +G+ +++R L+ 
Sbjct: 799 KTNSGVTPLHFAAGLGKANIFRLLLSRGADIKAEDINSQM-PIHEAVSNGHLEIVRILIE 857

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT 131
             P  +       E   +LAV+K   D F+  V +  N          D  GNT+LHL +
Sbjct: 858 KDPSLMNVKNIRNEYPFYLAVEKRYKDIFDYFVSKDAN------VNEVDHNGNTLLHLFS 911

Query: 132 LNKLKQIVELLIRENSNRRI 151
                ++V+ L++  +N R+
Sbjct: 912 STGELEVVQFLMQNGANFRL 931

Insecticidal presynaptic neurotoxin that induces neurotransmitter exocytosis. Binds to neurexin-1-alpha (NRXN1), latrophilin-1 (LPHN1), and receptor-type tyrosine-protein phosphatase S (PTPRS), and induces neurotransmitter exocytosis through two calcium-dependent mechanisms (membrane pore formation and signaling via latrophilin) and a yet to be defined calcium-independent mechanism (By similarity). The toxin forms channels with 0.55-0.58 nm entrance diameter and a relatively small conductance in planar phospholipid membranes.

Latrodectus tredecimguttatus (taxid: 6925)

>sp|Q9Y2G4|ANKR6_HUMAN Ankyrin repeat domain-containing protein 6 OS=Homo sapiens GN=ANKRD6 PE=1 SV=3

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/154 (30%), Positives = 72/154 (46%), Gaps = 16/154 (10%)

Query: 16  GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV-SICP 74
           G T +HL +  G    V+I  +   +L ++ D+     LHRA + GN+++I AL+   C 
Sbjct: 42  GRTPLHLAANKGHLPVVQILLKAGCDLDVQ-DDGDQTALHRATVVGNTEIIAALIHEGC- 99

Query: 75  ESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNK 134
            +L++   +G TALH A     S + + L+    N         K+K GNT LHLA  N 
Sbjct: 100 -ALDRQDKDGNTALHEASWHGFSQSAKLLIKAGAN------VLAKNKAGNTALHLACQNS 152

Query: 135 LKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
             Q   +L+   S      R +  N  G T L +
Sbjct: 153 HSQSTRVLLLAGS------RADLKNNAGDTCLHV 180

Recruits CKI-epsilon to the beta-catenin degradation complex that consists of AXN1 or AXN2 and GSK3-beta and allows efficient phosphorylation of beta-catenin, thereby inhibiting beta-catenin/Tcf signals.

Homo sapiens (taxid: 9606)

>sp|Q69ZU8|ANKR6_MOUSE Ankyrin repeat domain-containing protein 6 OS=Mus musculus GN=Ankrd6 PE=1 SV=2

 Score = 53.9 bits (128), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 16/156 (10%)

Query: 14  QRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV-SI 72
           + G T +HL +  G    V+I  +   +L ++ D+     LHRA + GN++++ AL+   
Sbjct: 40  KHGRTPLHLAANKGHLSVVQILLKAGCDLDVQ-DDGDQTALHRATVVGNTEILTALIREG 98

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
           C  +L++   +G TALH A     S + + LV    N         ++K GNT LHLA  
Sbjct: 99  C--ALDRQDKDGNTALHEAAWHGFSQSAKLLVKAGAN------VLARNKAGNTALHLACQ 150

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
           N   Q   +L+   S      R +  N  G T L +
Sbjct: 151 NSHSQSTRILLLGGS------RADLKNNAGDTCLHV 180

Recruits CKI-epsilon to the beta-catenin degradation complex that consists of AXN1 or AXN2 and GSK3-beta and allows efficient phosphorylation of beta-catenin, thereby inhibiting beta-catenin/Tcf signals.

Mus musculus (taxid: 10090)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 51.6 bits (122), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 41/157 (26%), Positives = 74/157 (47%), Gaps = 14/157 (8%)

Query: 13  NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
           N RGET +H+ +  G AE VR   +   ++  +  +    PLH +A  G +D+++ L+  
Sbjct: 446 NVRGETALHMAARSGQAEVVRYLVQDGAQVEAKAKD-DQTPLHISARLGKADIVQQLLQQ 504

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
              S    T++G T LHLA ++   D    L+D   +       +   K+G T LH+A  
Sbjct: 505 G-ASPNAATTSGYTPLHLAAREGHEDVAAFLLDHGAS------LSITTKKGFTPLHVAAK 557

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
               ++  LL++++++       +   K G T L + 
Sbjct: 558 YGKLEVASLLLQKSASP------DAAGKSGLTPLHVA 588

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
255539875	430	ankyrin repeat-containing protein, putat	0.920	0.539	0.404	4e-40
224114660	448	predicted protein [Populus trichocarpa]	0.964	0.542	0.304	2e-25
225447366	462	PREDICTED: ankyrin repeat-containing pro	0.813	0.443	0.376	4e-24
255539879	315	protein binding protein, putative [Ricin	0.678	0.542	0.369	6e-24
224136414	459	predicted protein [Populus trichocarpa]	0.626	0.344	0.364	2e-23
359490025	450	PREDICTED: LOW QUALITY PROTEIN: ankyrin	0.996	0.557	0.285	1e-21
255539939	320	ankyrin repeat-containing protein, putat	0.761	0.6	0.341	5e-21
224134294	218	predicted protein [Populus trichocarpa]	0.543	0.628	0.394	3e-20
359495749	460	PREDICTED: uncharacterized protein LOC10	0.674	0.369	0.340	1e-19
225469107	430	PREDICTED: ankyrin repeat-containing pro	0.619	0.362	0.365	1e-19

>gi|255539875|ref|XP_002511002.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550117|gb|EEF51604.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  171 bits (432), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 98/242 (40%), Positives = 141/242 (58%), Gaps = 10/242 (4%)

Query: 1   MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALD 60
           +AR + Q   ++ Q G T +HL  + GD   V +  +++ ELC E D  SMIPL  A   
Sbjct: 62  IARNYRQFLRVRYQEGYTALHLACSRGDLPLVELLLKLDSELCFEKDKFSMIPLQTAISF 121

Query: 61  GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
           G ++VI  L++  PES+ KLT   ET  HLA K  +S AFEAL++E K  ++EHL   KD
Sbjct: 122 GYTEVISTLIAARPESVRKLTPQRETLFHLAAKHHQSSAFEALLEEVKKLKQEHLLHRKD 181

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKE 180
           ++GN VLH+A  NKL  IV+LL+  +   R M+R+NT+NK+  T L +   NS+D + ++
Sbjct: 182 RQGNNVLHIAASNKLIGIVKLLLPAD---RAMVRVNTLNKKRLTALDVYYQNSKDISTRD 238

Query: 181 IGWIIQRAIAQQSPQLPADGAANSSRNQTRWPMQTRNVLLMVVVTIAAAFFMVACHLPDS 240
           IG I+  A   +   LP        R   RW ++T+NV+L+V+  I  A F   C LP S
Sbjct: 239 IGRILCEAGGLEGRSLPM-------RAYIRWTLETKNVILVVLGIITGAAFTTVCSLPKS 291

Query: 241 LV 242
            V
Sbjct: 292 FV 293

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114660|ref|XP_002332335.1| predicted protein [Populus trichocarpa] gi|222832582|gb|EEE71059.1| predicted protein [Populus trichocarpa]

 Score =  122 bits (305), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 26/269 (9%)

Query: 3   RLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGN 62
           RL P  A   NQ G + MH+ + +G  E  +   E++ +LC       M P H AA+ G 
Sbjct: 56  RLKPVFAIEVNQEGFSPMHIAADNGQVEIAKELMEVDIKLCRLEGRQKMTPFHHAAIRGR 115

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE 122
           ++VI  ++S CP+ +E  T   E+ALHLAV+ +R +A + LVD  +   KE+L   KD++
Sbjct: 116 AEVISLMLSGCPDCIEDETERRESALHLAVRNNRFEAIKKLVDWIREMNKEYLLNMKDEQ 175

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIG 182
           GNTVLHLA+  K ++++E+ +   S     + +N +N  G T L +      ++  +EI 
Sbjct: 176 GNTVLHLASWKKQRRVIEIFLGSGSASTGSLEVNAINHTGITALDVILLFPSEAGDREIV 235

Query: 183 WIIQRAIAQQS----------PQLPADGAANSSR------NQTRW---------PMQTRN 217
            I++ A A ++           Q   D  +   R      N   +         P + R 
Sbjct: 236 EILRSAGAMRARDSVPSTVTNSQTSTDNPSTPERCWSNRDNLVEYFKFKKDRDSPSEARG 295

Query: 218 VLLMVVVTIAAAFFMVACHLPDSLVREDT 246
            LL++ V +A A F V    P   V +DT
Sbjct: 296 TLLVIAVLVATATFQVGVGPPGG-VWQDT 323

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447366|ref|XP_002274771.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  117 bits (294), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 78/207 (37%), Positives = 111/207 (53%), Gaps = 2/207 (0%)

Query: 3   RLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGN 62
           RL P+++S  N+ G   +HL S +G  + VR    +  EL     + S  PLH AA+ G 
Sbjct: 58  RLKPEISSSLNKDGFAAIHLASANGFVDIVRELLMVKHELGHLRCSDSRTPLHLAAITGR 117

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE 122
           ++VIR L+ ICP S+E +T  GETA+HLAVK ++  A +ALV+  K+   + L   KD++
Sbjct: 118 TEVIRELLRICPASIEDVTVGGETAVHLAVKNNQLKALKALVESFKHSNIQDLLNAKDED 177

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIG 182
           GNTVLHLAT  K    ++LL+ +       + +N  NK G T L L +   Q     E G
Sbjct: 178 GNTVLHLATARKQGLTMKLLLGDGDMAAAAVDVNLTNKSGFTVLDLLDVVQQ--IVNEPG 235

Query: 183 WIIQRAIAQQSPQLPADGAANSSRNQT 209
             I R +  +S  L A     SS   T
Sbjct: 236 DYILRDLLLRSGALRASELIKSSSAAT 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539879|ref|XP_002511004.1| protein binding protein, putative [Ricinus communis] gi|223550119|gb|EEF51606.1| protein binding protein, putative [Ricinus communis]

 Score =  117 bits (292), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 72/195 (36%), Positives = 107/195 (54%), Gaps = 24/195 (12%)

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLH 128
           LVS C ES+ K     ETALH+A+K  +   FE LV+E K  ++E +   KD EGNTVLH
Sbjct: 52  LVSSCKESIAKENLQNETALHVALKSHQCRVFEVLVEEIKKLKQEEILNRKDDEGNTVLH 111

Query: 129 LATLNKLKQIVELLIRENSN-----RRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGW 183
           +A   KL +IV+LL+  + +      R ++R+NT+N++G+  L + + N +D   + IG 
Sbjct: 112 IAAKYKLTEIVKLLLPSDCSTSTFTSRAVMRVNTLNRKGEIALDVYHQNGRDITSRGIGL 171

Query: 184 IIQRAIAQ--------------QSPQLPADGAANSSRNQTRWPMQTRNVLLMVVVTIAAA 229
           I+  A A               QSP    DG          W ++TRNVLL+V+V IA A
Sbjct: 172 ILYEAGAVEGRLVRQIETQESLQSPLQDRDGIGRPG-----WSLETRNVLLVVLVMIAGA 226

Query: 230 FFMVACHLPDSLVRE 244
            F + C++P   ++E
Sbjct: 227 AFGMTCNIPAVFLKE 241

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136414|ref|XP_002326854.1| predicted protein [Populus trichocarpa] gi|222835169|gb|EEE73604.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 58/159 (36%), Positives = 94/159 (59%), Gaps = 1/159 (0%)

Query: 6   PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV 65
           P  A   NQ G + +H+ S++G  E VR    +  ++CL        PLH AA+ G  D+
Sbjct: 60  PAFARELNQDGFSPVHIASSNGHVELVRELLRVGYDICLLKGKDGKTPLHLAAMKGRVDI 119

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT 125
           ++ LV  CP+S++++T  GET LH+AVK ++++A + L++E K      +  WKDK+GNT
Sbjct: 120 VKELVCACPQSVKEVTICGETVLHVAVKSNQAEAVKVLLEEIKKLDMMEIVNWKDKDGNT 179

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
           ++HLATL K  + + LLI   +     + +N++N  G T
Sbjct: 180 IMHLATLRKQHETIRLLIGREA-IAYGVEVNSINASGFT 217

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490025|ref|XP_003634016.1| PREDICTED: LOW QUALITY PROTEIN: ankyrin repeat-containing protein At2g01680-like [Vitis vinifera]

 Score =  109 bits (272), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/277 (28%), Positives = 128/277 (46%), Gaps = 26/277 (9%)

Query: 1   MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALD 60
           + RL P      NQ G + +H+ + +G  E V    + + + C         PLH AA+ 
Sbjct: 55  LIRLKPDFIKELNQDGFSPIHMAAANGHQEVVMELLKFDWKXCHLEGRDEKTPLHCAAMK 114

Query: 61  GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
           G  +V+R ++S C E +E +T   E ALHLAVK S+ +A   LV++ +  R+E +   KD
Sbjct: 115 GKVNVVRVILSACKECIEDVTVQKEIALHLAVKNSQYEAVRVLVEKVREMRREDVLNMKD 174

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKE 180
           + GNT+LHLAT  K +Q   LL         +  +N +N  G T L +      ++  +E
Sbjct: 175 EHGNTILHLATWRKQRQAKFLLGDATIPGSGVTEVNLMNNSGLTALDVLLIFPSEAGDRE 234

Query: 181 IGWIIQRAIAQ--QSPQLPADGAANSSR------------------NQTRW------PMQ 214
           I  I+  A A+  Q    P  G  N +R                  N  R+      P +
Sbjct: 235 IKEILHSAGAKRAQDIAFPPFGTQNHARLNSTTTVETCPMQPNNLVNYFRFHRGRDSPGE 294

Query: 215 TRNVLLMVVVTIAAAFFMVACHLPDSLVREDTLAGKS 251
            R+ LL++ V +A A + V    P  + ++++   +S
Sbjct: 295 ARSALLVIAVLVATATYQVGLSPPGGVWQDNSGTNQS 331

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539939|ref|XP_002511034.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223550149|gb|EEF51636.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  107 bits (267), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 1/193 (0%)

Query: 1   MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALD 60
           + RL P+ A   NQ G + MH+ +T G  E VR   +++  LC         PLH AA+ 
Sbjct: 55  LLRLKPEFAQELNQDGYSPMHMAATIGHVEIVRELAKVDSRLCRVRGKQKKTPLHLAAIK 114

Query: 61  GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
           G ++V   ++  CP+ +E +T  GETA+H AVK ++  A   LVD  +   +E +   KD
Sbjct: 115 GRAEVTSVMLMSCPDCIEDVTVRGETAVHQAVKNNQFHAVNVLVDWIRGTNREEMLNVKD 174

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKE 180
           + GNTVLHLA   K +Q  +LL+   + R  ++ +N  N  G T L L      ++   E
Sbjct: 175 ELGNTVLHLAAWKKQRQ-AKLLLGAATIRSGILEVNAKNNSGLTCLDLLLIFPSEAGDAE 233

Query: 181 IGWIIQRAIAQQS 193
           +  I++ A A Q+
Sbjct: 234 VIEILRGAGALQA 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134294|ref|XP_002321784.1| predicted protein [Populus trichocarpa] gi|222868780|gb|EEF05911.1| predicted protein [Populus trichocarpa]

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 54/137 (39%), Positives = 83/137 (60%)

Query: 3   RLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGN 62
           +L P  A   NQ G +  H+ + +G  E V+   +++ +LC       M PLH AA+ G 
Sbjct: 56  KLKPVFAKEVNQEGFSPTHIAAANGHVEIVKELMKVDIKLCRLEGRQKMTPLHYAAIKGR 115

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE 122
           ++VI A++S CP+ +E  T   E ALHLAVK +R +A + L D  K+  KE+L   KD++
Sbjct: 116 AEVISAMLSDCPDCIEDETDRKENALHLAVKNNRFEAIKILGDWIKDMNKEYLLNMKDEQ 175

Query: 123 GNTVLHLATLNKLKQIV 139
           GNTVLHLA+  K ++++
Sbjct: 176 GNTVLHLASWKKQREVI 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495749|ref|XP_003635081.1| PREDICTED: uncharacterized protein LOC100852638 [Vitis vinifera]

 Score =  102 bits (255), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 95/179 (53%), Gaps = 9/179 (5%)

Query: 13  NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
           NQ+G + +HL +  G  + VR+  EI+ ELC       M PLH A++ G ++ +  L+S 
Sbjct: 70  NQQGYSPIHLAAAHGHVDVVRMLIEISSELCCLKGRDGMTPLHCASVKGRAETMSLLISA 129

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
            P  + ++T  GETALH+A + ++ DA   LV+  +  +   +   KD +GNTVLHLA  
Sbjct: 130 SPLCVIEVTERGETALHVAARNNQLDALRVLVEWLRRTKALVVINSKDGDGNTVLHLAAA 189

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTT---LQLCNANS------QDSAFKEIG 182
            K  Q +ELL+  +     ++ +N +NK G T    L LC   S       +  F+ IG
Sbjct: 190 RKNHQAIELLLSCSDGAPEVLEVNAINKRGLTAFDLLMLCPCESGIVHAEAERLFRGIG 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225469107|ref|XP_002269257.1| PREDICTED: ankyrin repeat-containing protein At3g12360-like [Vitis vinifera]

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 57/156 (36%), Positives = 88/156 (56%)

Query: 13  NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
           NQ G + +HL + +G    V +   I+ ELC       + PLH A++ G +D I  L+S 
Sbjct: 70  NQHGYSPIHLAAANGHVNVVEMLLGISHELCYLRGKGGLTPLHYASIKGRADTISLLLSS 129

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
            P  + + T  GETALH+AV+ ++ +A   LV+  K      +  WKD+EGNT+LHLA  
Sbjct: 130 SPLCVVEETERGETALHIAVRNNQLEALRVLVEGLKRSNNLVIINWKDREGNTILHLAAA 189

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            K  Q++ELL+  N+    ++ +N  NK G T L++
Sbjct: 190 RKNHQVIELLLNCNNRSPGVLEVNATNKIGLTALEI 225

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2176252	442	AT5G51160 "AT5G51160" [Arabido	0.805	0.459	0.310	2e-21
TAIR|locus:2020833	616	AT1G03670 "AT1G03670" [Arabido	0.880	0.360	0.266	4.1e-16
TAIR|locus:2170081	535	AT5G50140 "AT5G50140" [Arabido	0.726	0.342	0.286	4.6e-16
TAIR|locus:2128781	677	AT4G03460 "AT4G03460" [Arabido	0.738	0.274	0.271	7.9e-16
TAIR|locus:2172099	431	AT5G54620 [Arabidopsis thalian	0.674	0.394	0.304	4.8e-15
TAIR|locus:2128771	641	AT4G03450 "AT4G03450" [Arabido	0.904	0.355	0.257	3e-14
TAIR|locus:2172089	426	ANK "ankyrin" [Arabidopsis tha	0.912	0.539	0.268	1e-12
TAIR|locus:2157553	598	AT5G54710 "AT5G54710" [Arabido	0.714	0.301	0.273	3.4e-12
TAIR|locus:2026489	543	AT1G07710 "AT1G07710" [Arabido	0.619	0.287	0.307	4.5e-12
TAIR|locus:2132711	445	AT4G10720 "AT4G10720" [Arabido	0.761	0.431	0.259	1.8e-11

TAIR|locus:2176252 AT5G51160 "AT5G51160" [Arabidopsis thaliana (taxid:3702)]

 Score = 255 (94.8 bits), Expect = 2.0e-21, P = 2.0e-21
 Identities = 64/206 (31%), Positives = 102/206 (49%)

Query:    13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI 72
             ++ G + +H  +  G  ETVR    + ++LC   D     PLH A + G  DVIR +V+ 
Sbjct:    44 DKNGFSPLHAAAAAGQVETVRATLGVEKKLCRLKDRDGKTPLHVATMRGKIDVIREIVAS 103

Query:    73 CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
             C + LE  T  G+TALHLAV     +A  A+V+      +  +   KD++GNT LHLAT 
Sbjct:   104 CVDCLEDETVQGQTALHLAVLHLEIEAVIAIVELITETNRFDVLNKKDEQGNTALHLATW 163

Query:   133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQ 192
              K +Q++E+L++          +N +NK G + + L      ++  +EI   +  A AQ+
Sbjct:   164 RKNRQVIEVLVQAIPEESRSFEVNAMNKMGLSAMDLLVMFPSEAGDREIYEKLIEAGAQR 223

Query:   193 SPQLPADGAANSSRNQTRWPMQTRNV 218
                +   G  N  R  +    Q R +
Sbjct:   224 GRDI---GTTNVERTTSTSTCQERTM 246

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0006826 "iron ion transport" evidence=RCA

GO:0010043 "response to zinc ion" evidence=RCA

GO:0010106 "cellular response to iron ion starvation" evidence=RCA

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:2020833 AT1G03670 "AT1G03670" [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 4.1e-16, P = 4.1e-16
 Identities = 65/244 (26%), Positives = 112/244 (45%)

Query:     6 PQLASIKNQRGETTMHLLSTDGDAETVR-IFGEINR---ELCLEVDNSSMIPLHRAALDG 61
             P L  ++N+ G T +   ++ G  E +R I  E ++    LC   D+    P+H AA +G
Sbjct:   239 PGLIELRNEEGRTCLSYGASMGCYEGIRYILAEFDKAASSLCYVADDDGFTPIHMAAKEG 298

Query:    62 NSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV--DEAKNHRKEHLFTWK 119
             +  +I+  +  CP+S E L +  +   H+A    +S   + L+  DE K    E     +
Sbjct:   299 HVRIIKEFLKHCPDSRELLNNQCQNIFHVAAIAGKSKVVKYLLKLDEGKRMMNE-----Q 353

Query:   120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAF- 178
             D  GNT LHLAT ++   +V +L   +      I +  +N EG T L +      ++A+ 
Sbjct:   354 DINGNTPLHLATKHRYPIVVNMLTWNDG-----INLRALNNEGFTALDIAETMKDNNAYV 408

Query:   179 --KEIGWI-IQRAIAQQSPQL-PADGAANSSRNQTRWPMQTRNVLLMVVVTIAAAFFMVA 234
               K + W+ +  A A   P L P   + +S ++  R+   + N L++    +A   F   
Sbjct:   409 LYKRLIWMALVSAGAPHGPNLIPLTVSQSSKQSPERYK-DSVNTLMVTATLVATVTFAAG 467

Query:   235 CHLP 238
               LP
Sbjct:   468 LTLP 471

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2170081 AT5G50140 "AT5G50140" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 4.6e-16, Sum P(2) = 4.6e-16
 Identities = 57/199 (28%), Positives = 93/199 (46%)

Query:    16 GETTMHLLSTDGDAETVRIFGE-INRELCLE--VDNSSMIPLHRAALDGNSDVIRALVSI 72
             G T++ LL  +  AE++    E +  +L L   V+     PLH A ++G+ + + A ++ 
Sbjct:    72 GHTSILLLMLESTAESIESLEETVPNDLKLAEMVNKDGFTPLHCAVMNGSVETLTAFINK 131

Query:    73 CPESLEKLT-SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT 131
              P S + +T    ET  HLA +  + +AF   +  AKN     L    D EGNTVLH A 
Sbjct:   132 APLSFDSVTLQTSETVFHLAARHKKMEAF---IFMAKNANLRRLLYELDGEGNTVLHAAA 188

Query:   132 LNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWII--QRAI 189
                   +V  ++ E     I I + T N +G   + L N + +D  FK +  I+     I
Sbjct:   189 SVGFLSLVSYIVHE-----IKIEVTTQNDKGFEAVDLLNKDDED--FKMMSMILGHDSEI 241

Query:   190 AQQSPQLPADGAANSSRNQ 208
              Q++   P D    S++ +
Sbjct:   242 VQRAASSPRDAYTPSTQTE 260

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128781 AT4G03460 "AT4G03460" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 7.9e-16, P = 7.9e-16
 Identities = 53/195 (27%), Positives = 93/195 (47%)

Query:    47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
             D+    P+H A   G   +++A++  CP++LE L    +  LH+A K  + +  + ++  
Sbjct:   347 DDDGSFPIHMAVKYGYVKILKAILKRCPDALELLDRENQNVLHVAAKNGKIEVLKFILRC 406

Query:   107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
              K+  KE L   +D  GNT LHLAT N   ++V +L  +N      + + T+N +G T L
Sbjct:   407 CKDKNKEKLINEEDANGNTPLHLATKNWHPKVVSMLTWDNR-----VDLKTLNHDGVTAL 461

Query:   167 QLCNANSQDSA--FKEIGWI-IQRAIAQQSPQLPADGAANSSRNQTRWPMQTRNVLLMVV 223
              +   N   S   F+ + W+ +  A A + P+L        + +  ++  +  N LL+V 
Sbjct:   462 DIAEKNMDSSYTFFERLTWMALISAGAPRGPKLILSTPVTQNSDGGKYKDRV-NTLLLVA 520

Query:   224 VTIAAAFFMVACHLP 238
               +A   F     LP
Sbjct:   521 TLVATMTFTAGFTLP 535

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2172099 AT5G54620 [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 4.8e-15, P = 4.8e-15
 Identities = 56/184 (30%), Positives = 82/184 (44%)

Query:     4 LWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS 63
             L P  A   N  G + +HL   +   +      +IN +L L      M PLH     G++
Sbjct:    59 LKPTFAKKLNSDGVSPLHLAVENHQVQLALELVKINPDLVLVAGRKGMTPLHLVVKKGDA 118

Query:    64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN-HRKE------HLF 116
             +++   +  CPES++    NGETALH+AV   R +  + L       H+ +      H+ 
Sbjct:   119 NLLTEFLLACPESIKDTNVNGETALHIAVMNDRYEELKVLTGWIHRLHKSDAASTEIHVL 178

Query:   117 TWKDKEGNTVLHLATL-NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD 175
               +D++GNT+LHLA   N  K   ELL   + NR I       NK G T L +   N   
Sbjct:   179 NKRDRDGNTILHLAAYKNNHKAFKELLKCISLNRDIQ------NKGGMTALDILRTNGSH 232

Query:   176 SAFK 179
                K
Sbjct:   233 MNIK 236

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128771 AT4G03450 "AT4G03450" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 62/241 (25%), Positives = 106/241 (43%)

Query:     6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV 65
             P L + +++ G T + + +  G  + V      +     E D+    P+H A   G   +
Sbjct:   247 PSLVNERDEEGRTCLSVAAYVGYYKGVVNLLHRSTSNVFECDDDGSYPIHMAVEKGRVKI 306

Query:    66 IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT 125
                L+  CP+S   L   G+  LH+A K  ++  +   V +A +  K  L   +D +GNT
Sbjct:   307 FLKLLKCCPDSQYLLNKQGQNILHIAAKSGKTGTYLLQVIKAYDLIKNDLIMEQDVDGNT 366

Query:   126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDS-AFKEIGWI 184
              LHLATL    + V +L +      + IR    NK+G + L +  +N Q +  F+E    
Sbjct:   367 PLHLATLTWRPRTVNILNKFTLGNHLHIR----NKDGLSALDIAESNLQSNYVFRE-RMT 421

Query:   185 IQRAIAQQSPQ----LPADGAANSSRNQTRWPMQTR---NVLLMVVVTIAAAFFMVACHL 237
             +   +   SP+    +P  G    SR++     + +   NVLL+V   +A   F     +
Sbjct:   422 LMVLLCTCSPRGFKMIPTSGITLKSRSEKVAGNKYKDSINVLLLVATLVATVAFAAGIAI 481

Query:   238 P 238
             P
Sbjct:   482 P 482

GO:0000165 "MAPK cascade" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2172089 ANK "ankyrin" [Arabidopsis thaliana (taxid:3702)]

 Score = 182 (69.1 bits), Expect = 1.0e-12, P = 1.0e-12
 Identities = 69/257 (26%), Positives = 109/257 (42%)

Query:     4 LWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS 63
             L P  A   N+ G + +HL   +   E      +++  L        M PLH  A  G+ 
Sbjct:    59 LKPSFAKKLNEYGLSPLHLAVENDQVELALELVKVDPSLVRIRGRGGMTPLHLVAKKGDV 118

Query:    64 DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHR-KEHLF----TW 118
             D++   +  CPES++ +  NGET LH+ +   + +  + L    +  R  + +F      
Sbjct:   119 DLLTDFLLACPESIKDVNVNGETILHITIMNDKYEQLKVLTGWMQKMRDSDDVFIDVLNR 178

Query:   119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAF 178
             +D+ GNTVLHLA      ++V+ L++  S  R     N  NK G T L +  A       
Sbjct:   179 RDRGGNTVLHLAAYENNDKVVKQLVKCLSLDR-----NIQNKSGMTALDVLRARGSHMN- 232

Query:   179 KEIGWIIQRAIAQQSPQL------------PADGAANS----SRNQTRWPMQTRNVLLMV 222
             KEI  IIQ +  +    L            P     +     +R ++R    +RN LL++
Sbjct:   233 KEIEEIIQMSGGKTGGSLSGIQEWYIFLREPVTFKEHCKTRIARYRSRISDGSRNALLVI 292

Query:   223 VVTIAAAFFMVACHLPD 239
                I +A F  A  L D
Sbjct:   293 AALIISATFQTAAQLLD 309

GO:0005886 "plasma membrane" evidence=ISM

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0045088 "regulation of innate immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

GO:0045087 "innate immune response" evidence=IMP

TAIR|locus:2157553 AT5G54710 "AT5G54710" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 3.4e-12, Sum P(2) = 3.4e-12
 Identities = 53/194 (27%), Positives = 88/194 (45%)

Query:     5 WPQLASIKNQRGETTMHLLSTDGDAETVRIF--GEINRELCLEVDNSSMIPLHRAALDGN 62
             +P L    ++   T +H     G+ E  R     ++N+E+  +VD   + PLHRA ++G+
Sbjct:   186 FPNLILDADEEQSTLLHKACKSGNLEMARTLLDVDVNQEIAEKVDKDGLTPLHRAVINGS 245

Query:    63 SDVIRALVSICPESLEKLTSNG--ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
              ++++  +   P S   +T+ G  ET  HLA K  ++ AF  +   A N R+  L    D
Sbjct:   246 VEILKEFLCKAPSSFN-ITTQGTIETVFHLAAKYQKTKAFIFMAQSA-NIRQ--LLYSLD 301

Query:   121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKE 180
              E NTVLH+A       +V  ++ E +     I +   NK+G   + L +    D     
Sbjct:   302 AEDNTVLHVAASVDSTSLVRHILSETT-----IDVTLKNKKGFAAVDLIDKEGVDFPLLS 356

Query:   181 IGWIIQRAIAQQSP 194
             + W    A   Q P
Sbjct:   357 L-WFRDEAEKIQRP 369

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026489 AT1G07710 "AT1G07710" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 4.5e-12, P = 4.5e-12
 Identities = 51/166 (30%), Positives = 78/166 (46%)

Query:     1 MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALD 60
             +A    +LA   +    T +H  +T G  E V    E+   L     ++    LH A+ +
Sbjct:   120 LAEAHSELAMTVDLSNTTALHTAATQGHTEVVNFLLELGSSLAGIAKSNGKTALHSASRN 179

Query:    61 GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
             G+  VI+AL++  P    ++   G+TALH+AVK +  +  E L+   K  R        D
Sbjct:   180 GHVKVIKALLASEPAIAIRMDKKGQTALHMAVKGTNVEVVEELI---KADRSS--INIAD 234

Query:   121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
              +GNT LH+A      QIV+LL+  N     M     VN+ G+T L
Sbjct:   235 TKGNTALHIAARKGRSQIVKLLLANN-----MTDTKAVNRSGETAL 275

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2132711 AT4G10720 "AT4G10720" [Arabidopsis thaliana (taxid:3702)]

 Score = 175 (66.7 bits), Expect = 1.8e-11, P = 1.8e-11
 Identities = 53/204 (25%), Positives = 90/204 (44%)

Query:     1 MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALD 60
             +  L P  A   N  G + +HL   +G    V    +++ +L        M P H+    
Sbjct:    56 LMNLKPSFARKLNTYGLSPLHLAIEEGQTRLVLSLLKVDSDLVRLRGREGMTPFHQVVRR 115

Query:    61 GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK---EHL-- 115
             G +D++   +  CP  ++    NGETALH+AV   R +  E L+   +  R+   E L  
Sbjct:   116 GETDLMTEFLLACPGCIKDANVNGETALHIAVSNDRYEELEVLLGWVQRLRQTDAESLEM 175

Query:   116 --FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANS 173
                  +D++GNT LH+A      + V++L++ ++  R     N  N+ G T L + +   
Sbjct:   176 QFLNKRDQDGNTALHIAAYQNRFKAVKILVKCSAVNR-----NIHNRTGLTALDILHNQR 230

Query:   174 QDSAFKEIGWIIQRAIAQQSPQLP 197
                A   I  II++   +    LP
Sbjct:   231 DHHANSNIENIIRKWGGKSGNSLP 254

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-17
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-17
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	3e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	7e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	0.001
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.002
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 37/125 (29%), Positives = 64/125 (51%), Gaps = 13/125 (10%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
             D     PLH AA +G+ +V++ L+    +   K  ++G T LHLA K    +  + L+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAK-DNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 105 DEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
           ++  +         +DK+GNT LHLA  N    +V+LL++  ++      +N  +K+G+T
Sbjct: 61  EKGADVNA------RDKDGNTPLHLAARNGNLDVVKLLLKHGAD------VNARDKDGRT 108

Query: 165 TLQLC 169
            L L 
Sbjct: 109 PLHLA 113

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 74.7 bits (184), Expect = 4e-17
 Identities = 37/133 (27%), Positives = 67/133 (50%), Gaps = 8/133 (6%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
            +++ G T +HL +++G  E V++  E   ++    DN    PLH AA +G+ ++++ L+
Sbjct: 2   ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLA 130
                 +     +G T LHLA +    D  + L+    +         +DK+G T LHLA
Sbjct: 61  EKGA-DVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNA------RDKDGRTPLHLA 113

Query: 131 TLNKLKQIVELLI 143
             N   ++V+LL+
Sbjct: 114 AKNGHLEVVKLLL 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 53.4 bits (129), Expect = 2e-09
 Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 9/95 (9%)

Query: 54  LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKE 113
           LH AA +GN ++++ L+    +       + +TALHLA +    +  + L++   +    
Sbjct: 1   LHLAAKNGNLELVKLLLEKGAD---VNLGDTDTALHLAARNGNLEIVKLLLEHGADVNA- 56

Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
                KDK+GNT LHLA  N   +IV+LL+   ++
Sbjct: 57  -----KDKDGNTALHLAARNGNLEIVKLLLEHGAD 86

Length = 91

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 49.8 bits (118), Expect = 3e-07
 Identities = 37/149 (24%), Positives = 62/149 (41%), Gaps = 15/149 (10%)

Query: 38  INRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS 97
           I        D    +PLH AA  G+  +++ L++     +    ++G+T LHLA      
Sbjct: 61  IVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLAS-GADVNAKDADGDTPLHLAALNGNP 119

Query: 98  -----DAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIM 152
                +  + L++         +   +D++GNT LH A LN    IVELL+   ++    
Sbjct: 120 PEGNIEVAKLLLE---AGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD---- 172

Query: 153 IRINTVNKEGQTTLQLCNANSQDSAFKEI 181
              N+ N  G T L     N +    K +
Sbjct: 173 --PNSRNSYGVTALDPAAKNGRIELVKLL 199

Length = 235

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 44.9 bits (107), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 4/79 (5%)

Query: 27  GDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET 86
           G+ E V++   + +   + + ++    LH AA +GN ++++ L+    +   K   +G T
Sbjct: 8   GNLELVKLL--LEKGADVNLGDTDT-ALHLAARNGNLEIVKLLLEHGADVNAK-DKDGNT 63

Query: 87  ALHLAVKKSRSDAFEALVD 105
           ALHLA +    +  + L++
Sbjct: 64  ALHLAARNGNLEIVKLLLE 82

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
            LH+AA+ G  ++++ L+      + +   +G TALH+A +    +  + L+
Sbjct: 4   ALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 42/158 (26%), Positives = 69/158 (43%), Gaps = 16/158 (10%)

Query: 10  SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
           +IK+   +T +H     GD E++++  E   ++ +E DN    P+H A      D+I+ L
Sbjct: 118 NIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCY-PIHIAIKHNFFDIIKLL 176

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHL 129
           +           +NGE+ LH A +       + L+D   +         K K G T LH 
Sbjct: 177 LE-KGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNH------IMNKCKNGFTPLHN 229

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ 167
           A ++  +  +ELLI   S       IN  + +G T L 
Sbjct: 230 AIIHN-RSAIELLINNAS-------INDQDIDGSTPLH 259

Length = 434

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 6/58 (10%)

Query: 86  TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
           TALH A    R +  + L++      K       D++GNT LH+A  N   ++++LL+
Sbjct: 3   TALHKAAISGRLELVKYLLE------KGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 6e-04
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 6/62 (9%)

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLH 128
           L+   P  L     NG T LHLA K    +  + L+    +         +D +G T L 
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL------RDSDGLTALD 54

Query: 129 LA 130
           LA
Sbjct: 55  LA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)

Query: 37 EINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLA 91
          E         D +   PLH AA  G  ++++ L+      L    S+G TAL LA
Sbjct: 3  EHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 0.001
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 109 NHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            H    L    D  GNT LHLA      ++V+ L++   +      +N  + +G T L L
Sbjct: 3   EHGPIDLNAT-DGNGNTPLHLAAKYGALELVQWLLKPGVD------LNLRDSDGLTALDL 55

Length = 56

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 38.5 bits (90), Expect = 0.002
 Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 20/115 (17%)

Query: 80  LTSNGETALHLAVKKSRSDA--FEALVD-----EAKNHRKEHLFTW------KDKEGNTV 126
             S+GE  LHL ++ ++ D    + L+D      AKN R  +L ++      KD  G T 
Sbjct: 137 KNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKN-RVNYLLSYGVPINIKDVYGFTP 195

Query: 127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEI 181
           LH A  N   + V+ L+   +N       N VNK G T L +   N+    FK +
Sbjct: 196 LHYAVYNNNPEFVKYLLDLGAN------PNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 6/72 (8%)

Query: 83  NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
            G T LH AV  +  +  + L+D   N          +K G+T LH+A LN  K+I +LL
Sbjct: 191 YGFTPLHYAVYNNNPEFVKYLLDLGAN------PNLVNKYGDTPLHIAILNNNKEIFKLL 244

Query: 143 IRENSNRRIMIR 154
           +    + + +I 
Sbjct: 245 LNNGPSIKTIIE 256

Length = 422

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
PHA02791	284	ankyrin-like protein; Provisional	99.98
PHA02791	284	ankyrin-like protein; Provisional	99.98
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02874	434	ankyrin repeat protein; Provisional	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.97
PHA02878	477	ankyrin repeat protein; Provisional	99.97
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA02878	477	ankyrin repeat protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02795	437	ankyrin-like protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02946	446	ankyin-like protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02876	682	ankyrin repeat protein; Provisional	99.95
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
PHA02917	661	ankyrin-like protein; Provisional	99.94
PHA02989	494	ankyrin repeat protein; Provisional	99.94
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
KOG0514	452	consensus Ankyrin repeat protein [General function	99.94
KOG0508	615	consensus Ankyrin repeat protein [General function	99.94
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PHA02743	166	Viral ankyrin protein; Provisional	99.91
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02741	169	hypothetical protein; Provisional	99.91
PHA02884	300	ankyrin repeat protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.91
PHA02795	437	ankyrin-like protein; Provisional	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.9
PHA02917	661	ankyrin-like protein; Provisional	99.9
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.9
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.9
PHA02730	672	ankyrin-like protein; Provisional	99.89
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
PHA02736	154	Viral ankyrin protein; Provisional	99.88
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.88
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.87
PHA02792	631	ankyrin-like protein; Provisional	99.87
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.87
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.86
PHA02792	631	ankyrin-like protein; Provisional	99.86
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.84
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.83
KOG0514	452	consensus Ankyrin repeat protein [General function	99.83
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.83
PHA02884	300	ankyrin repeat protein; Provisional	99.83
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.81
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.8
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.78
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.77
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.77
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.71
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.69
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.67
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.64
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.64
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.61
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.58
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.58
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.52
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.52
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.51
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.51
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.49
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.46
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.44
PF13962	113	PGG: Domain of unknown function	99.26
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.15
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.09
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.07
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.97
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	98.95
PF13606	30	Ank_3: Ankyrin repeat	98.92
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.88
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.87
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.81
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.78
PF13606	30	Ank_3: Ankyrin repeat	98.76
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.71
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.69
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.66
KOG0522	560	consensus Ankyrin repeat protein [General function	98.61
KOG0522	560	consensus Ankyrin repeat protein [General function	98.58
KOG2384	223	consensus Major histocompatibility complex protein	98.47
KOG0511	516	consensus Ankyrin repeat protein [General function	98.45
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.41
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.38
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.36
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.3
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.26
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.22
KOG2384	223	consensus Major histocompatibility complex protein	98.22
KOG0511	516	consensus Ankyrin repeat protein [General function	98.1
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.3
KOG2505	591	consensus Ankyrin repeat protein [General function	97.17
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.81
KOG2505	591	consensus Ankyrin repeat protein [General function	96.74
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.15
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	94.84
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	93.98
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.49
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.14
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	88.87

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-39  Score=228.87  Aligned_cols=174  Identities=29%  Similarity=0.360  Sum_probs=158.1

Q ss_pred             cCcccccccc-CCCChHHHHHHhCCCHHHHHHHhh-cCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            4 LWPQLASIKN-QRGETTMHLLSTDGDAETVRIFGE-INRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         4 ~~p~~~~~~d-~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      -.|..++.++ .+|+|||||||+.|+.++|.+|++ .+..++. +|..||||||.||..|+.++|+.|+.+...+++..+
T Consensus        25 s~~kSL~~r~dqD~Rt~LHwa~S~g~~eiv~fLlsq~nv~~dd-kDdaGWtPlhia~s~g~~evVk~Ll~r~~advna~t  103 (226)
T KOG4412|consen   25 SDPKSLNARDDQDGRTPLHWACSFGHVEIVYFLLSQPNVKPDD-KDDAGWTPLHIAASNGNDEVVKELLNRSGADVNATT  103 (226)
T ss_pred             cChhhhhccccccCCceeeeeeecCchhHHHHHHhcCCCCCCC-ccccCCchhhhhhhcCcHHHHHHHhcCCCCCcceec
Confidence            3453455555 599999999999999999999995 4555555 799999999999999999999999999558999999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.|+||||+..|..+|+++|++.++      .++.+|..|.||||-|+..|..+++++|++      .++.+|.+|+.
T Consensus       104 n~G~T~LHyAagK~r~eIaqlLle~ga------~i~~kD~~~qtplHRAAavGklkvie~Li~------~~a~~n~qDk~  171 (226)
T KOG4412|consen  104 NGGQTCLHYAAGKGRLEIAQLLLEKGA------LIRIKDKQGQTPLHRAAAVGKLKVIEYLIS------QGAPLNTQDKY  171 (226)
T ss_pred             CCCcceehhhhcCChhhHHHHHHhcCC------CCcccccccCchhHHHHhccchhhHHHHHh------cCCCCCccccc
Confidence            999999999999999999999999999      899999999999999999999999999997      77899999999


Q ss_pred             CCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          162 GQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       162 g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+||||.|..    .++.++..+|+++||+...
T Consensus       172 G~TpL~~al~----e~~~d~a~lLV~~gAd~~~  200 (226)
T KOG4412|consen  172 GFTPLHHALA----EGHPDVAVLLVRAGADTDR  200 (226)
T ss_pred             CccHHHHHHh----ccCchHHHHHHHhccceee
Confidence            9999999966    7799999999999998874

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-33  Score=196.61  Aligned_cols=147  Identities=24%  Similarity=0.314  Sum_probs=140.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      ++..|+.|+||||+||..|+.++|+.|+.+ +++++. .+..|.||||||+.+|..+++++|++++ +.++.+|..|.||
T Consensus        65 ~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~advna-~tn~G~T~LHyAagK~r~eIaqlLle~g-a~i~~kD~~~qtp  142 (226)
T KOG4412|consen   65 PDDKDDAGWTPLHIAASNGNDEVVKELLNRSGADVNA-TTNGGQTCLHYAAGKGRLEIAQLLLEKG-ALIRIKDKQGQTP  142 (226)
T ss_pred             CCCccccCCchhhhhhhcCcHHHHHHHhcCCCCCcce-ecCCCcceehhhhcCChhhHHHHHHhcC-CCCcccccccCch
Confidence            567799999999999999999999999999 999988 8999999999999999999999999999 8999999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      ||.|+..|..+++++|+..++      .+|.+|..|+||||.|.--|+.++..+|++      .|++++..|++| ||+.
T Consensus       143 lHRAAavGklkvie~Li~~~a------~~n~qDk~G~TpL~~al~e~~~d~a~lLV~------~gAd~~~edke~-t~~~  209 (226)
T KOG4412|consen  143 LHRAAAVGKLKVIEYLISQGA------PLNTQDKYGFTPLHHALAEGHPDVAVLLVR------AGADTDREDKEG-TALR  209 (226)
T ss_pred             hHHHHhccchhhHHHHHhcCC------CCCcccccCccHHHHHHhccCchHHHHHHH------hccceeeccccC-chHH
Confidence            999999999999999999998      899999999999999987889999999996      889999999988 9998


Q ss_pred             hhh
Q 025505          168 LCN  170 (252)
Q Consensus       168 ~a~  170 (252)
                      .+.
T Consensus       210 ~a~  212 (226)
T KOG4412|consen  210 IAC  212 (226)
T ss_pred             HHH
Confidence            877

>PHA02791 ankyrin-like protein; Provisional

Probab=99.98  E-value=2.4e-31  Score=210.15  Aligned_cols=164  Identities=17%  Similarity=0.147  Sum_probs=102.4

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      ..|.+|+||||+|+..|+.+++++|++.|++++. .  ++.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+
T Consensus        25 ~~D~~G~TpLh~Aa~~g~~eiv~~Ll~~ga~~n~-~--d~~TpLh~Aa~~g~~eiV~lLL~~G-advn~~d~~G~TpLh~  100 (284)
T PHA02791         25 KADVHGHSALYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKILLFSG-MDDSQFDDKGNTALYY  100 (284)
T ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHHCcCCCcC-C--CCCCHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHH
Confidence            4566666666666666666666666666665543 2  2456666666666666666666665 4555566666666666


Q ss_pred             HHHcCChHHHHHHHHHHhcccccccccccCC---------------------------------CCCcHHHHHHhCChHH
Q 025505           91 AVKKSRSDAFEALVDEAKNHRKEHLFTWKDK---------------------------------EGNTVLHLATLNKLKQ  137 (252)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~---------------------------------~g~t~Lh~A~~~~~~~  137 (252)
                      |+..|+.+++++|++.++      +++.++.                                 .|.||||+|+..|+.+
T Consensus       101 Aa~~g~~eivk~Ll~~ga------din~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~~d~~~g~TpLh~Aa~~g~~e  174 (284)
T PHA02791        101 AVDSGNMQTVKLFVKKNW------RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNGHVD  174 (284)
T ss_pred             HHHcCCHHHHHHHHHCCC------CcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcccccccCccHHHHHHHcCCHH
Confidence            666666666666666555      2222222                                 3566666666666666


Q ss_pred             HHHHHHhcccccceeeeeecccCCCCCH-hHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          138 IVELLIRENSNRRIMIRINTVNKEGQTT-LQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       138 ~v~~Ll~~~~~~~~~~~~~~~~~~g~t~-l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ++++|++      .|++++.+|..|.|| ||+|+.    .++.+++++|+++|++++.
T Consensus       175 iv~lLL~------~gAd~n~~d~~g~t~~L~~Aa~----~~~~e~v~lLl~~Ga~in~  222 (284)
T PHA02791        175 MMILLLD------YMTSTNTNNSLLFIPDIKLAID----NKDLEMLQALFKYDINIYS  222 (284)
T ss_pred             HHHHHHH------CCCCCCcccCCCCChHHHHHHH----cCCHHHHHHHHHCCCCCcc
Confidence            6666664      566666666666665 677666    6666777777777776653

>PHA02791 ankyrin-like protein; Provisional

Probab=99.98  E-value=2.9e-31  Score=209.72  Aligned_cols=142  Identities=19%  Similarity=0.079  Sum_probs=114.3

Q ss_pred             CCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHH
Q 025505           26 DGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD  105 (252)
Q Consensus        26 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~  105 (252)
                      .++.+++++|++++++.   .|..|.||||+|+..|+.+++++|++++ .+++..  ++.||||+|+..|+.+++++|++
T Consensus         9 ~~~~~~~~~Lis~~a~~---~D~~G~TpLh~Aa~~g~~eiv~~Ll~~g-a~~n~~--d~~TpLh~Aa~~g~~eiV~lLL~   82 (284)
T PHA02791          9 WKSKQLKSFLSSKDAFK---ADVHGHSALYYAIADNNVRLVCTLLNAG-ALKNLL--ENEFPLHQAATLEDTKIVKILLF   82 (284)
T ss_pred             cCHHHHHHHHHhCCCCC---CCCCCCcHHHHHHHcCCHHHHHHHHHCc-CCCcCC--CCCCHHHHHHHCCCHHHHHHHHH
Confidence            46789999999998853   7899999999999999999999999998 455554  47899999999999999999999


Q ss_pred             HHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC-CHhHhhhhcCCCchhHHHHHH
Q 025505          106 EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ-TTLQLCNANSQDSAFKEIGWI  184 (252)
Q Consensus       106 ~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~-t~l~~a~~~~~~~~~~~~~~~  184 (252)
                      .++      +++.+|..|+||||+|+..|+.+++++|++      .|++++.++..|. ||||+|+.    .++.+++++
T Consensus        83 ~Ga------dvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~------~gadin~~~~~g~~TpL~~Aa~----~g~~eivk~  146 (284)
T PHA02791         83 SGM------DDSQFDDKGNTALYYAVDSGNMQTVKLFVK------KNWRLMFYGKTGWKTSFYHAVM----LNDVSIVSY  146 (284)
T ss_pred             CCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCcCccCCCCCcHHHHHHHH----cCCHHHHHH
Confidence            998      788999999999999999999999999997      5555555544442 45555444    444444444


Q ss_pred             HHHhc
Q 025505          185 IQRAI  189 (252)
Q Consensus       185 L~~~g  189 (252)
                      |++.+
T Consensus       147 LL~~~  151 (284)
T PHA02791        147 FLSEI  151 (284)
T ss_pred             HHhcC
Confidence            44443

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.97  E-value=4.7e-32  Score=224.18  Aligned_cols=176  Identities=17%  Similarity=0.173  Sum_probs=161.4

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      .+.++..|.+|.|+||||+.+++.+++++|+++|++++..--..+.||||||+++|+..++.+|+++| +++..+|.+|.
T Consensus        68 g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~~vv~lLlqhG-Adpt~~D~~G~  146 (600)
T KOG0509|consen   68 GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHG-ADPTLKDKQGL  146 (600)
T ss_pred             CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcHHHHHHHHHcC-CCCceecCCCC
Confidence            56688899999999999999999999999999999999845578999999999999999999999999 89999999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeeccc-CCCCC
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KEGQT  164 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t  164 (252)
                      +|+|+|++.++.-++-+|+..+.      +++.+|..|+||||+|+.+|....+..|+.      .++.+...| ..|+|
T Consensus       147 ~~lHla~~~~~~~~vayll~~~~------d~d~~D~~grTpLmwAaykg~~~~v~~LL~------f~a~~~~~d~~~g~T  214 (600)
T KOG0509|consen  147 TPLHLAAQFGHTALVAYLLSKGA------DIDLRDNNGRTPLMWAAYKGFALFVRRLLK------FGASLLLTDDNHGNT  214 (600)
T ss_pred             cHHHHHHHhCchHHHHHHHHhcc------cCCCcCCCCCCHHHHHHHhcccHHHHHHHH------hcccccccccccCCc
Confidence            99999999999999999999998      899999999999999999999887899995      788888888 89999


Q ss_pred             HhHhhhhcCCCchhHHHHHHHHHhccccCCCCCC
Q 025505          165 TLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPA  198 (252)
Q Consensus       165 ~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~~  198 (252)
                      |||+|+.    .++.+++.+|++.|++.+....+
T Consensus       215 pLHwa~~----~gN~~~v~Ll~~g~~~~d~~~~~  244 (600)
T KOG0509|consen  215 PLHWAVV----GGNLTAVKLLLEGGADLDKTNTN  244 (600)
T ss_pred             hHHHHHh----cCCcceEehhhhcCCcccccccC
Confidence            9999998    88899999777777777665444

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=218.45  Aligned_cols=170  Identities=18%  Similarity=0.141  Sum_probs=144.4

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++..+..|.||||+|+..|+.+++++|++.|++++. .+..+.||||+|+..|+.+++++|++.+.......+.+|.|||
T Consensus        28 ~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL  106 (413)
T PHA02875         28 PNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDV-KYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPL  106 (413)
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccc-cCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHH
Confidence            556777899999999999999999999999988776 6777888999999999999999988888555556677788999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHh
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      |+|+..++.+++++|++.|+      +++..+..|.||||+|+..|+.+++++|++      .|++++.+|..|.||||+
T Consensus       107 ~~A~~~~~~~iv~~Ll~~ga------d~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~------~g~~~~~~d~~g~TpL~~  174 (413)
T PHA02875        107 HLATILKKLDIMKLLIARGA------DPDIPNTDKFSPLHLAVMMGDIKGIELLID------HKACLDIEDCCGCTPLII  174 (413)
T ss_pred             HHHHHhCCHHHHHHHHhCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHh------cCCCCCCCCCCCCCHHHH
Confidence            99998888899999988888      778888888888888888888888888885      778888888888888888


Q ss_pred             hhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          169 CNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       169 a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      |+.    .++.+++++|++.|++++..
T Consensus       175 A~~----~g~~eiv~~Ll~~ga~~n~~  197 (413)
T PHA02875        175 AMA----KGDIAICKMLLDSGANIDYF  197 (413)
T ss_pred             HHH----cCCHHHHHHHHhCCCCCCcC
Confidence            888    77888888888888888753

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.97  E-value=6.2e-30  Score=216.40  Aligned_cols=176  Identities=18%  Similarity=0.169  Sum_probs=161.1

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC-------
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICP-------   74 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-------   74 (252)
                      ++..+..++..+..|.||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++++.       
T Consensus        21 l~~~~~~~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~Ga~~n~-~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~   99 (434)
T PHA02874         21 IKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINH-INTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPI   99 (434)
T ss_pred             HHcCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchh
Confidence            4455667788889999999999999999999999999999987 88899999999999999999999998763       


Q ss_pred             ---------------ccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHH
Q 025505           75 ---------------ESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIV  139 (252)
Q Consensus        75 ---------------~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  139 (252)
                                     .+++.++..|.||||+|+..|+.+++++|++.++      +++..|..|.||||+|+..++.+++
T Consensus       100 ~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~ga------d~n~~d~~g~tpLh~A~~~~~~~iv  173 (434)
T PHA02874        100 PCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGA------DVNIEDDNGCYPIHIAIKHNFFDII  173 (434)
T ss_pred             ccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHHCCcHHHH
Confidence                           2345678899999999999999999999999998      7889999999999999999999999


Q ss_pred             HHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          140 ELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ++|++      .|++++..+..|.||||+|+.    .++.+++++|++.|++...
T Consensus       174 ~~Ll~------~g~~~n~~~~~g~tpL~~A~~----~g~~~iv~~Ll~~g~~i~~  218 (434)
T PHA02874        174 KLLLE------KGAYANVKDNNGESPLHNAAE----YGDYACIKLLIDHGNHIMN  218 (434)
T ss_pred             HHHHH------CCCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHhCCCCCcC
Confidence            99996      888999999999999999999    8899999999999998764

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.1e-29  Score=213.77  Aligned_cols=170  Identities=20%  Similarity=0.203  Sum_probs=157.2

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      ..+..+..+.||||+|+..|+.++++.|++.|+......+..|.||||+|+..|+.+++++|+++| ++++.++..|.||
T Consensus        60 ~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~g-ad~~~~~~~g~tp  138 (413)
T PHA02875         60 IPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARG-ADPDIPNTDKFSP  138 (413)
T ss_pred             CccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcccccccCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCCH
Confidence            355667889999999999999999999999998876556778999999999999999999999999 7889999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC-CHh
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ-TTL  166 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~-t~l  166 (252)
                      ||+|+..|+.+++++|+++++      +++.+|..|+||||+|+..|+.+++++|++      .|++++..+..|. ||+
T Consensus       139 Lh~A~~~~~~~~v~~Ll~~g~------~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~------~ga~~n~~~~~~~~t~l  206 (413)
T PHA02875        139 LHLAVMMGDIKGIELLIDHKA------CLDIEDCCGCTPLIIAMAKGDIAICKMLLD------SGANIDYFGKNGCVAAL  206 (413)
T ss_pred             HHHHHHcCCHHHHHHHHhcCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCcCCCCCCchHH
Confidence            999999999999999999998      788999999999999999999999999996      8899999988775 788


Q ss_pred             HhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          167 QLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+|+.    .++.+++++|+++|++++.
T Consensus       207 ~~A~~----~~~~~iv~~Ll~~gad~n~  230 (413)
T PHA02875        207 CYAIE----NNKIDIVRLFIKRGADCNI  230 (413)
T ss_pred             HHHHH----cCCHHHHHHHHHCCcCcch
Confidence            88998    8899999999999999875

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.97  E-value=1.5e-29  Score=216.35  Aligned_cols=169  Identities=19%  Similarity=0.180  Sum_probs=129.0

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHH----------------------
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR----------------------   67 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~----------------------   67 (252)
                      +..+..+.||||+|+..|+.++|+.|+++|++++. .+..|.||||+||..|+.++++                      
T Consensus        31 ~~~~~~~~tPLh~A~~~g~~e~vk~Ll~~gadvn~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~  109 (477)
T PHA02878         31 TSASLIPFIPLHQAVEARNLDVVKSLLTRGHNVNQ-PDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAF  109 (477)
T ss_pred             CcccccCcchHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHH
Confidence            44455677888888888888888888888888876 7888888888888766554433                      


Q ss_pred             ------------------------------------------HHHHhCCccccccCCC-CchHHHHHHHcCChHHHHHHH
Q 025505           68 ------------------------------------------ALVSICPESLEKLTSN-GETALHLAVKKSRSDAFEALV  104 (252)
Q Consensus        68 ------------------------------------------~Ll~~~~~~~~~~~~~-g~t~L~~a~~~~~~~~~~~Ll  104 (252)
                                                                +|+++| ++++..+.. |.||||+|+..|+.+++++|+
T Consensus       110 ~~~~~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~g-adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll  188 (477)
T PHA02878        110 NNRNVEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYG-ADINMKDRHKGNTALHYATENKDQRLTELLL  188 (477)
T ss_pred             HcCCHHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcC-CCCCccCCCCCCCHHHHHHhCCCHHHHHHHH
Confidence                                                      333333 344555666 888888888888888888888


Q ss_pred             HHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHH
Q 025505          105 DEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWI  184 (252)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  184 (252)
                      +.|+      +++..|..|+||||+|+..++.+++++|++      .|++++.+|..|.||||+|+..   .++.+++++
T Consensus       189 ~~ga------d~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~------~ga~in~~d~~g~TpLh~A~~~---~~~~~iv~~  253 (477)
T PHA02878        189 SYGA------NVNIPDKTNNSPLHHAVKHYNKPIVHILLE------NGASTDARDKCGNTPLHISVGY---CKDYDILKL  253 (477)
T ss_pred             HCCC------CCCCcCCCCCCHHHHHHHhCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHHHh---cCCHHHHHH
Confidence            8887      677888888888888888888888888885      7788888888888888887751   246788888


Q ss_pred             HHHhccccCCC
Q 025505          185 IQRAIAQQSPQ  195 (252)
Q Consensus       185 L~~~ga~~~~~  195 (252)
                      |+++|++++..
T Consensus       254 Ll~~gadvn~~  264 (477)
T PHA02878        254 LLEHGVDVNAK  264 (477)
T ss_pred             HHHcCCCCCcc
Confidence            88888887654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.8e-29  Score=215.36  Aligned_cols=172  Identities=18%  Similarity=0.164  Sum_probs=149.7

Q ss_pred             cCccccccccCCCChHHHHHH--hCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcC--CHHHHHHHHHhCCccccc
Q 025505            4 LWPQLASIKNQRGETTMHLLS--TDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDG--NSDVIRALVSICPESLEK   79 (252)
Q Consensus         4 ~~p~~~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~   79 (252)
                      ..++ ++..|..|.||||+|+  ..|+.+++++|++.|++++. .+..|.||||+|+..|  +.+++++|++++ .+++.
T Consensus        95 ~ga~-i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g-~din~  171 (480)
T PHA03100         95 YGAN-VNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNI-KNSDGENLLHLYLESNKIDLKILKLLIDKG-VDINA  171 (480)
T ss_pred             CCCC-CCCCCCCCCchhhHHHhcccChHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCChHHHHHHHHHCC-CCccc
Confidence            3344 4788899999999999  99999999999999999887 8889999999999999  999999999998 67888


Q ss_pred             cCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCC------CcHHHHHHhCCh--HHHHHHHHhcccccce
Q 025505           80 LTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG------NTVLHLATLNKL--KQIVELLIRENSNRRI  151 (252)
Q Consensus        80 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g------~t~Lh~A~~~~~--~~~v~~Ll~~~~~~~~  151 (252)
                      ++..|.||||+|+..|+.+++++|++.|+      +++..+..|      .||||+|+..++  .+++++|++      .
T Consensus       172 ~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga------~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~------~  239 (480)
T PHA03100        172 KNRYGYTPLHIAVEKGNIDVIKFLLDNGA------DINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLS------Y  239 (480)
T ss_pred             ccCCCCCHHHHHHHhCCHHHHHHHHHcCC------CccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHH------c
Confidence            88899999999999999999999999988      677777777      788888888888  888888885      7


Q ss_pred             eeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          152 MIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       152 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |++++.+|..|.||||+|+.    .++.+++++|++.|++++.
T Consensus       240 g~din~~d~~g~TpL~~A~~----~~~~~iv~~Ll~~gad~n~  278 (480)
T PHA03100        240 GVPINIKDVYGFTPLHYAVY----NNNPEFVKYLLDLGANPNL  278 (480)
T ss_pred             CCCCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCc
Confidence            88888888889999999888    7788999999999987764

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=7.2e-29  Score=209.92  Aligned_cols=167  Identities=26%  Similarity=0.283  Sum_probs=144.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++.+|..|.||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|.|||
T Consensus       117 ~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-~~~n~~~~~g~tpL  194 (434)
T PHA02874        117 VNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNI-EDDNGCYPIHIAIKHNFFDIIKLLLEKG-AYANVKDNNGESPL  194 (434)
T ss_pred             CCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCC-cCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHH
Confidence            567889999999999999999999999999999987 8999999999999999999999999999 67888999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHh
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      |+|+..|+.+++++|++.++      +++..+..|.||||+|+..+. +++++|+       .+++++.+|..|+||||+
T Consensus       195 ~~A~~~g~~~iv~~Ll~~g~------~i~~~~~~g~TpL~~A~~~~~-~~i~~Ll-------~~~~in~~d~~G~TpLh~  260 (434)
T PHA02874        195 HNAAEYGDYACIKLLIDHGN------HIMNKCKNGFTPLHNAIIHNR-SAIELLI-------NNASINDQDIDGSTPLHH  260 (434)
T ss_pred             HHHHHcCCHHHHHHHHhCCC------CCcCCCCCCCCHHHHHHHCCh-HHHHHHH-------cCCCCCCcCCCCCCHHHH
Confidence            99999999999999999998      677777788888888887654 4566666       456677788888888888


Q ss_pred             hhhcCCCchhHHHHHHHHHhccccCC
Q 025505          169 CNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       169 a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+..   ..+.+++++|++.|++.+.
T Consensus       261 A~~~---~~~~~iv~~Ll~~gad~n~  283 (434)
T PHA02874        261 AINP---PCDIDIIDILLYHKADISI  283 (434)
T ss_pred             HHhc---CCcHHHHHHHHHCcCCCCC
Confidence            8751   2356888888888888765

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.8e-29  Score=213.86  Aligned_cols=170  Identities=26%  Similarity=0.286  Sum_probs=159.5

Q ss_pred             cccccccCCCChHHHHHHhCC--CHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCC
Q 025505            7 QLASIKNQRGETTMHLLSTDG--DAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNG   84 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   84 (252)
                      .-++..|..|.||||+|+..|  +.+++++|+++|++++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|
T Consensus       132 ~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~din~-~d~~g~tpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~  209 (480)
T PHA03100        132 ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINA-KNRYGYTPLHIAVEKGNIDVIKFLLDNG-ADINAGDIET  209 (480)
T ss_pred             CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCCccc-ccCCCCCHHHHHHHhCCHHHHHHHHHcC-CCccCCCCCC
Confidence            346778999999999999999  99999999999999987 8889999999999999999999999999 6788888888


Q ss_pred             ------chHHHHHHHcCC--hHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeee
Q 025505           85 ------ETALHLAVKKSR--SDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRIN  156 (252)
Q Consensus        85 ------~t~L~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  156 (252)
                            .||||.|+..++  .+++++|++.|+      +++.+|..|.||||+|+..++.+++++|++      .|++++
T Consensus       210 ~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~------din~~d~~g~TpL~~A~~~~~~~iv~~Ll~------~gad~n  277 (480)
T PHA03100        210 LLFTIFETPLHIAACYNEITLEVVNYLLSYGV------PINIKDVYGFTPLHYAVYNNNPEFVKYLLD------LGANPN  277 (480)
T ss_pred             CcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCC
Confidence                  999999999999  999999999999      889999999999999999999999999996      889999


Q ss_pred             cccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          157 TVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       157 ~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .+|..|.||+++|+.    .++.+++++|+++|++.+.
T Consensus       278 ~~d~~g~tpl~~A~~----~~~~~iv~~Ll~~g~~i~~  311 (480)
T PHA03100        278 LVNKYGDTPLHIAIL----NNNKEIFKLLLNNGPSIKT  311 (480)
T ss_pred             ccCCCCCcHHHHHHH----hCCHHHHHHHHhcCCCHHH
Confidence            999999999999998    8899999999999997753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.9e-28  Score=187.00  Aligned_cols=167  Identities=16%  Similarity=0.153  Sum_probs=146.1

Q ss_pred             cccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcC--CHHHHHHHHHhCCccccccC-CC
Q 025505            7 QLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDG--NSDVIRALVSICPESLEKLT-SN   83 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~   83 (252)
                      +..+.....+.||||+|+..|+.++|+.|++.   .+. .+..|.||||+|+..+  +.+++++|++++ .+++.++ ..
T Consensus        12 ~~~~~~~~~~~~pL~~A~~~~~~~~vk~Li~~---~n~-~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g-advn~~~~~~   86 (209)
T PHA02859         12 DFTDYLFYRYCNPLFYYVEKDDIEGVKKWIKF---VND-CNDLYETPIFSCLEKDKVNVEILKFLIENG-ADVNFKTRDN   86 (209)
T ss_pred             hhHHHHhhccCcHHHHHHHhCcHHHHHHHHHh---hhc-cCccCCCHHHHHHHcCCCCHHHHHHHHHCC-CCCCccCCCC
Confidence            44566678899999999999999999999975   333 7889999999999854  899999999999 6788876 58


Q ss_pred             CchHHHHHHHc---CChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHh--CChHHHHHHHHhcccccceeeeeecc
Q 025505           84 GETALHLAVKK---SRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL--NKLKQIVELLIRENSNRRIMIRINTV  158 (252)
Q Consensus        84 g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~  158 (252)
                      |.||||+|+..   ++.+++++|+++++      +++.+|..|.||||+|+.  .++.+++++|++      .|++++.+
T Consensus        87 g~TpLh~a~~~~~~~~~eiv~~Ll~~ga------din~~d~~G~TpLh~a~~~~~~~~~iv~~Li~------~gadin~~  154 (209)
T PHA02859         87 NLSALHHYLSFNKNVEPEILKILIDSGS------SITEEDEDGKNLLHMYMCNFNVRINVIKLLID------SGVSFLNK  154 (209)
T ss_pred             CCCHHHHHHHhCccccHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHhccCCHHHHHHHHH------cCCCcccc
Confidence            99999998764   47899999999999      899999999999999886  468999999996      89999999


Q ss_pred             cCCCCCHhHh-hhhcCCCchhHHHHHHHHHhccccCC
Q 025505          159 NKEGQTTLQL-CNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       159 ~~~g~t~l~~-a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |..|.||||. +..    .++.+++++|++.|++++.
T Consensus       155 d~~g~t~Lh~~a~~----~~~~~iv~~Ll~~Gadi~~  187 (209)
T PHA02859        155 DFDNNNILYSYILF----HSDKKIFDFLTSLGIDINE  187 (209)
T ss_pred             cCCCCcHHHHHHHh----cCCHHHHHHHHHcCCCCCC
Confidence            9999999996 455    6688999999999998875

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=1.2e-28  Score=207.81  Aligned_cols=169  Identities=14%  Similarity=0.167  Sum_probs=136.3

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcC--CHHHHHHHHHhCCcccc-ccCCCC
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDG--NSDVIRALVSICPESLE-KLTSNG   84 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~~~~~-~~~~~g   84 (252)
                      -++.+|..|.||||+||..|+.++|++|+++|++++. +|..|.||||+|+..+  ..+++++|++++ ++++ ..+..|
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~GAdin~-~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G-adin~~~d~~g  141 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHGADPNA-CDKQHKTPLYYLSGTDDEVIERINLLVQYG-AKINNSVDEEG  141 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCC-CCCCCCCHHHHHHHcCCchHHHHHHHHHcC-CCcccccCCCC
Confidence            3788999999999999999999999999999999987 8999999999998866  478999999999 5555 468889


Q ss_pred             chHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCC--hHHHHHHHHhcccccceeeeeecccCCC
Q 025505           85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNK--LKQIVELLIRENSNRRIMIRINTVNKEG  162 (252)
Q Consensus        85 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  162 (252)
                      .|||| |+..++.+++++|++.++      +++..|..|+||||+|+..+  ..+++++|++      .|++++.+|..|
T Consensus       142 ~tpL~-aa~~~~~~vv~~Ll~~ga------d~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~------~Gadin~~d~~G  208 (446)
T PHA02946        142 CGPLL-ACTDPSERVFKKIMSIGF------EARIVDKFGKNHIHRHLMSDNPKASTISWMMK------LGISPSKPDHDG  208 (446)
T ss_pred             CcHHH-HHHCCChHHHHHHHhccc------cccccCCCCCCHHHHHHHhcCCCHHHHHHHHH------cCCCCcccCCCC
Confidence            99997 556688888899988887      67777888888888777644  3577888885      777788888888


Q ss_pred             CCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          163 QTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       163 ~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +||||+|+..+  ..+.+++++|++ |++++.
T Consensus       209 ~TpLH~Aa~~~--~~~~~iv~lLl~-gadin~  237 (446)
T PHA02946        209 NTPLHIVCSKT--VKNVDIINLLLP-STDVNK  237 (446)
T ss_pred             CCHHHHHHHcC--CCcHHHHHHHHc-CCCCCC
Confidence            88888877621  135677777774 666654

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.96  E-value=3.7e-28  Score=211.87  Aligned_cols=172  Identities=17%  Similarity=0.223  Sum_probs=148.3

Q ss_pred             cccc-cCCCChHHHHHHh--CCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCC--HHHHHHHHHhCCccccccCCC
Q 025505            9 ASIK-NQRGETTMHLLST--DGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGN--SDVIRALVSICPESLEKLTSN   83 (252)
Q Consensus         9 ~~~~-d~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~   83 (252)
                      ++.. |..|.||||+|+.  .++.+++++|++.|++++. .|..|.||||+|+..|+  .+++++|+++| ++++.++..
T Consensus       169 IN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~-kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G-ADVN~kD~~  246 (764)
T PHA02716        169 LNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNL-QNNHLITPLHTYLITGNVCASVIKKIIELG-GDMDMKCVN  246 (764)
T ss_pred             cccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCCCHHHHHHHHHcC-CCCCCCCCC
Confidence            5666 8899999999864  4679999999999999998 89999999999999995  59999999999 789999999


Q ss_pred             CchHHHHHH-------------------------------------HcCChHHHHHHHHHHhcccccccccccCCCCCcH
Q 025505           84 GETALHLAV-------------------------------------KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV  126 (252)
Q Consensus        84 g~t~L~~a~-------------------------------------~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~  126 (252)
                      |.||||+|+                                     ..|+.+++++|++.|+      +++.+|..|+||
T Consensus       247 G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA------dIN~kD~~G~TP  320 (764)
T PHA02716        247 GMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV------KLHYKDSAGRTC  320 (764)
T ss_pred             CCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC------ceeccCCCCCCH
Confidence            999999753                                     3466778888888888      789999999999


Q ss_pred             HHHHHh--CChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcC----------CCchhHHHHHHHHHhccccCC
Q 025505          127 LHLATL--NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANS----------QDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       127 Lh~A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~----------~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ||+|+.  .++.+++++|++      .|++++.+|..|+||||+|+...          ...++.+++++|+++|++++.
T Consensus       321 LH~Aaa~~~~~~eIVklLLe------~GADIN~kD~~G~TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~  394 (764)
T PHA02716        321 LHQYILRHNISTDIIKLLHE------YGNDLNEPDNIGNTVLHTYLSMLSVVNILDPETDNDIRLDVIQCLISLGADITA  394 (764)
T ss_pred             HHHHHHHhCCCchHHHHHHH------cCCCCccCCCCCCCHHHHHHHhhhhhccccccccccChHHHHHHHHHCCCCCCC
Confidence            999864  467899999996      89999999999999999975310          003578999999999999876

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1e-27  Score=182.97  Aligned_cols=149  Identities=20%  Similarity=0.269  Sum_probs=134.6

Q ss_pred             cccccCCCChHHHHHHhCC--CHHHHHHHhhcCcccccccc-CCCCcHHHHHHHc---CCHHHHHHHHHhCCccccccCC
Q 025505            9 ASIKNQRGETTMHLLSTDG--DAETVRIFGEINRELCLEVD-NSSMIPLHRAALD---GNSDVIRALVSICPESLEKLTS   82 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g--~~~~v~~Ll~~~~~~~~~~~-~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~   82 (252)
                      ++..|..|.||||+|+..+  +.+++++|+++|++++. .+ ..|.||||+|+..   ++.+++++|++++ ++++.+|.
T Consensus        44 ~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gadvn~-~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g-adin~~d~  121 (209)
T PHA02859         44 VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGADVNF-KTRDNNLSALHHYLSFNKNVEPEILKILIDSG-SSITEEDE  121 (209)
T ss_pred             hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCCCCc-cCCCCCCCHHHHHHHhCccccHHHHHHHHHCC-CCCCCcCC
Confidence            6778999999999999754  89999999999999987 54 5899999998764   4799999999999 78999999


Q ss_pred             CCchHHHHHHH--cCChHHHHHHHHHHhcccccccccccCCCCCcHHHH-HHhCChHHHHHHHHhcccccceeeeeeccc
Q 025505           83 NGETALHLAVK--KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHL-ATLNKLKQIVELLIRENSNRRIMIRINTVN  159 (252)
Q Consensus        83 ~g~t~L~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~-A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  159 (252)
                      .|.||||+|+.  .++.+++++|++.++      +++.+|..|.||||. |+..++.+++++|++      .|++++.+|
T Consensus       122 ~G~TpLh~a~~~~~~~~~iv~~Li~~ga------din~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~------~Gadi~~~d  189 (209)
T PHA02859        122 DGKNLLHMYMCNFNVRINVIKLLIDSGV------SFLNKDFDNNNILYSYILFHSDKKIFDFLTS------LGIDINETN  189 (209)
T ss_pred             CCCCHHHHHHHhccCCHHHHHHHHHcCC------CcccccCCCCcHHHHHHHhcCCHHHHHHHHH------cCCCCCCCC
Confidence            99999999876  468999999999999      889999999999996 566789999999996      899999999


Q ss_pred             CCCCCHhHhhhh
Q 025505          160 KEGQTTLQLCNA  171 (252)
Q Consensus       160 ~~g~t~l~~a~~  171 (252)
                      ..|+||+++|..
T Consensus       190 ~~g~tpl~la~~  201 (209)
T PHA02859        190 KSGYNCYDLIKF  201 (209)
T ss_pred             CCCCCHHHHHhh
Confidence            999999999986

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.1e-28  Score=207.01  Aligned_cols=165  Identities=22%  Similarity=0.279  Sum_probs=147.6

Q ss_pred             cccccccCC-CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            7 QLASIKNQR-GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         7 ~~~~~~d~~-g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      .-++..|.. |.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+ .+++.+|..|.
T Consensus       158 adin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~gad~n~-~d~~g~tpLh~A~~~~~~~iv~~Ll~~g-a~in~~d~~g~  235 (477)
T PHA02878        158 ADINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNI-PDKTNNSPLHHAVKHYNKPIVHILLENG-ASTDARDKCGN  235 (477)
T ss_pred             CCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHHcC-CCCCCCCCCCC
Confidence            346777877 99999999999999999999999999987 8999999999999999999999999999 78999999999


Q ss_pred             hHHHHHHHc-CChHHHHHHHHHHhcccccccccccCC-CCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC
Q 025505           86 TALHLAVKK-SRSDAFEALVDEAKNHRKEHLFTWKDK-EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ  163 (252)
Q Consensus        86 t~L~~a~~~-~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  163 (252)
                      ||||+|+.. ++.+++++|++.|+      +++..+. .|.||||+|  .++.+++++|++      .|++++..|..|.
T Consensus       236 TpLh~A~~~~~~~~iv~~Ll~~ga------dvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~------~gadin~~d~~g~  301 (477)
T PHA02878        236 TPLHISVGYCKDYDILKLLLEHGV------DVNAKSYILGLTALHSS--IKSERKLKLLLE------YGADINSLNSYKL  301 (477)
T ss_pred             CHHHHHHHhcCCHHHHHHHHHcCC------CCCccCCCCCCCHHHHH--ccCHHHHHHHHH------CCCCCCCcCCCCC
Confidence            999999975 78999999999999      7888775 799999999  467899999996      8999999999999


Q ss_pred             CHhHhhhhcCCCchhHHHHHHHHHhcc
Q 025505          164 TTLQLCNANSQDSAFKEIGWIIQRAIA  190 (252)
Q Consensus       164 t~l~~a~~~~~~~~~~~~~~~L~~~ga  190 (252)
                      ||||+|+..   ....+++++|+..+.
T Consensus       302 TpL~~A~~~---~~~~~~~~~li~~~~  325 (477)
T PHA02878        302 TPLSSAVKQ---YLCINIGRILISNIC  325 (477)
T ss_pred             CHHHHHHHH---cCccchHHHHHHHHH
Confidence            999999862   235577888877654

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=6.7e-28  Score=206.71  Aligned_cols=68  Identities=21%  Similarity=0.136  Sum_probs=47.5

Q ss_pred             ccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       116 ~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      +|.+|..|+||||+|+..++.+++++|++      .|++++.+|..|+|||++|+.    .++.++++.|++++++.+
T Consensus       251 vN~~d~~G~TPL~~A~~~~~~~~v~~LL~------~GAdin~~d~~G~TpL~~A~~----~~~~~iv~~lL~~~~~~~  318 (489)
T PHA02798        251 INQVDELGFNPLYYSVSHNNRKIFEYLLQ------LGGDINIITELGNTCLFTAFE----NESKFIFNSILNKKPNKN  318 (489)
T ss_pred             CCCcCcCCccHHHHHHHcCcHHHHHHHHH------cCCcccccCCCCCcHHHHHHH----cCcHHHHHHHHccCCCHH
Confidence            44556667777777777777777777774      667777777777777777776    666777777777766664

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.8e-28  Score=206.21  Aligned_cols=175  Identities=16%  Similarity=0.157  Sum_probs=141.7

Q ss_pred             ccccccccCCCChHHHHHHhC---CCHHHHHHHhhcCccc-cccccCCCCcHHHHHHHc--CCHHHHHHHHHhCCccccc
Q 025505            6 PQLASIKNQRGETTMHLLSTD---GDAETVRIFGEINREL-CLEVDNSSMIPLHRAALD--GNSDVIRALVSICPESLEK   79 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~-~~~~~~~g~t~Lh~A~~~--g~~~~v~~Ll~~~~~~~~~   79 (252)
                      +.-++.+|..|.||||+|+..   |+.+++++|+++|+++ +. .+..|+||||+|+..  ++.+++++|+++| ++++.
T Consensus        98 Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~-~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~G-adi~~  175 (494)
T PHA02989         98 GADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDV-KNSRGYNLLHMYLESFSVKKDVIKILLSFG-VNLFE  175 (494)
T ss_pred             CCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccc-cCCCCCCHHHHHHHhccCCHHHHHHHHHcC-CCccc
Confidence            334778888999999987754   6789999999999998 45 888999999998754  5889999999998 55665


Q ss_pred             -cCCCCchHHHHHHHcC----ChHHHHHHHHHHhccccc--------------------------------ccccccCCC
Q 025505           80 -LTSNGETALHLAVKKS----RSDAFEALVDEAKNHRKE--------------------------------HLFTWKDKE  122 (252)
Q Consensus        80 -~~~~g~t~L~~a~~~~----~~~~~~~Ll~~~~~~~~~--------------------------------~~~~~~~~~  122 (252)
                       .+..|.||||+|+..+    +.+++++|++.|++.+..                                .+++.+|..
T Consensus       176 ~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~  255 (494)
T PHA02989        176 KTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKK  255 (494)
T ss_pred             cccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCC
Confidence             6788999999887654    788999999988754311                                135667788


Q ss_pred             CCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcccc
Q 025505          123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       123 g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~  192 (252)
                      |+||||+|+..++.+++++|++      .|++++.+|..|.||||+|+.    .++.++++.|++.++..
T Consensus       256 G~TpL~~Aa~~~~~~~v~~LL~------~Gadin~~d~~G~TpL~~A~~----~~~~~iv~~LL~~~p~~  315 (494)
T PHA02989        256 GFNPLLISAKVDNYEAFNYLLK------LGDDIYNVSKDGDTVLTYAIK----HGNIDMLNRILQLKPGK  315 (494)
T ss_pred             CCCHHHHHHHhcCHHHHHHHHH------cCCCccccCCCCCCHHHHHHH----cCCHHHHHHHHhcCCCh
Confidence            9999999999999999999995      888889999999999999888    78888999988876543

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.95  E-value=6.5e-28  Score=204.05  Aligned_cols=171  Identities=23%  Similarity=0.309  Sum_probs=153.4

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccc--------------cccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCL--------------EVDNSSMIPLHRAALDGNSDVIRALVSIC   73 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--------------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~   73 (252)
                      -++..|++|.||||.|+..|+.++++.+++.+.....              ..|.+|.||||+||+.|+.++++.|+..|
T Consensus       217 ~in~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G  296 (929)
T KOG0510|consen  217 HINFDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFG  296 (929)
T ss_pred             ccccccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcC
Confidence            4677899999999999999999999999998754321              35889999999999999999999999999


Q ss_pred             CccccccCCCCchHHHHHHHcCChHHHHHHHH-HHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhccccccee
Q 025505           74 PESLEKLTSNGETALHLAVKKSRSDAFEALVD-EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIM  152 (252)
Q Consensus        74 ~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  152 (252)
                       .+++.++.++.||||.|+++|++++++.|++ .+..     +.|..|..|.||||+|++.|+..++++|+.      .|
T Consensus       297 -a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~~~~~r-----llne~D~~g~tpLHlaa~~gH~~v~qlLl~------~G  364 (929)
T KOG0510|consen  297 -ASINSKNKDEESPLHFAAIYGRINTVERLLQESDTR-----LLNESDLHGMTPLHLAAKSGHDRVVQLLLN------KG  364 (929)
T ss_pred             -CcccccCCCCCCchHHHHHcccHHHHHHHHhCcCcc-----ccccccccCCCchhhhhhcCHHHHHHHHHh------cC
Confidence             8999999999999999999999999999999 3332     889999999999999999999999999996      55


Q ss_pred             eeee---cccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          153 IRIN---TVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       153 ~~~~---~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +...   ..|.+|+||||.|+.    .++..++++|+.+|+++..
T Consensus       365 A~~~~~~e~D~dg~TaLH~Aa~----~g~~~av~~Li~~Ga~I~~  405 (929)
T KOG0510|consen  365 ALFLNMSEADSDGNTALHLAAK----YGNTSAVQKLISHGADIGV  405 (929)
T ss_pred             hhhhcccccccCCchhhhHHHH----hccHHHHHHHHHcCCceee
Confidence            5554   458999999999999    9999999999999999943

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=8.9e-28  Score=209.51  Aligned_cols=173  Identities=20%  Similarity=0.193  Sum_probs=147.7

Q ss_pred             ccccccccCCCChHHHHHHhCCC--HHHHHHHhhcCccccccccCCCCcHHHHH--------------------------
Q 025505            6 PQLASIKNQRGETTMHLLSTDGD--AETVRIFGEINRELCLEVDNSSMIPLHRA--------------------------   57 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A--------------------------   57 (252)
                      +.-++.+|..|.||||+|+..|+  .++|++|++.|++++. ++..|+||||+|                          
T Consensus       202 GADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GADVN~-kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~  280 (764)
T PHA02716        202 GVNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGDMDM-KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKN  280 (764)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHhhhccCHHHHHHHHHhcccccccc
Confidence            44478899999999999999995  5999999999999998 899999999975                          


Q ss_pred             -----------HHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHH--cCChHHHHHHHHHHhcccccccccccCCCCC
Q 025505           58 -----------ALDGNSDVIRALVSICPESLEKLTSNGETALHLAVK--KSRSDAFEALVDEAKNHRKEHLFTWKDKEGN  124 (252)
Q Consensus        58 -----------~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~  124 (252)
                                 +..|+.+++++|++++ ++++.+|..|.||||+|+.  .++.+++++|++.|+      +++.+|..|+
T Consensus       281 ~~~~L~~~i~AA~~g~leiVklLLe~G-AdIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GA------DIN~kD~~G~  353 (764)
T PHA02716        281 IPMILHSYITLARNIDISVVYSFLQPG-VKLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGN------DLNEPDNIGN  353 (764)
T ss_pred             chhhhHHHHHHHHcCCHHHHHHHHhCC-CceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCC------CCccCCCCCC
Confidence                       3457889999999999 6789999999999999764  467899999999999      8999999999


Q ss_pred             cHHHHHHh--------------CChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcc
Q 025505          125 TVLHLATL--------------NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIA  190 (252)
Q Consensus       125 t~Lh~A~~--------------~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga  190 (252)
                      ||||+|+.              .++.+++++|++      .|++++.+|..|+||||.++......+..+++++|++.|+
T Consensus       354 TPLH~A~~~lav~~~ld~~~~~~~~~eVVklLL~------~GADIn~kn~~G~TPLh~y~~~a~n~~~~dIvklLis~~~  427 (764)
T PHA02716        354 TVLHTYLSMLSVVNILDPETDNDIRLDVIQCLIS------LGADITAVNCLGYTPLTSYICTAQNYMYYDIIDCLISDKV  427 (764)
T ss_pred             CHHHHHHHhhhhhccccccccccChHHHHHHHHH------CCCCCCCcCCCCCChHHHHHHHHHhcChHHHHHHHHhCcc
Confidence            99999875              368899999996      8999999999999999942111111467899999999886


Q ss_pred             cc
Q 025505          191 QQ  192 (252)
Q Consensus       191 ~~  192 (252)
                      ..
T Consensus       428 ~~  429 (764)
T PHA02716        428 LN  429 (764)
T ss_pred             hh
Confidence            43

>PHA02795 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.6e-27  Score=195.56  Aligned_cols=169  Identities=12%  Similarity=0.056  Sum_probs=148.7

Q ss_pred             cccCCCChHHHHHHh--CCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-----CCC
Q 025505           11 IKNQRGETTMHLLST--DGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKL-----TSN   83 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-----~~~   83 (252)
                      ..++.++|+||+++.  .|+.++|++|+++|++++.   .++.||||+|+..++.+++++|+++|....+..     +..
T Consensus       111 ~~~~~~~~~L~~~~~n~~n~~eiV~~LI~~GADIn~---~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~  187 (437)
T PHA02795        111 KNCNSVQDLLLYYLSNAYVEIDIVDFMVDHGAVIYK---IECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKII  187 (437)
T ss_pred             hccccccHHHHHHHHhcCCCHHHHHHHHHCCCCCCC---CCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhh
Confidence            578889999999999  8999999999999999975   345899999999999999999999995333332     235


Q ss_pred             CchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC
Q 025505           84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ  163 (252)
Q Consensus        84 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  163 (252)
                      +.+++|.|+..++.+++++|+++|+      +++.+|..|.||||+|+..|+.+++++|++      .|++++.+|..|.
T Consensus       188 ~~t~l~~a~~~~~~eIve~LIs~GA------DIN~kD~~G~TpLh~Aa~~g~~eiVelLL~------~GAdIN~~d~~G~  255 (437)
T PHA02795        188 QYTRGFLVDEPTVLEIYKLCIPYIE------DINQLDAGGRTLLYRAIYAGYIDLVSWLLE------NGANVNAVMSNGY  255 (437)
T ss_pred             ccchhHHHHhcCHHHHHHHHHhCcC------CcCcCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCC
Confidence            7899999999999999999999999      899999999999999999999999999996      9999999999999


Q ss_pred             CHhHhhhhcCC----CchhHHHHHHHHHhccccCC
Q 025505          164 TTLQLCNANSQ----DSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       164 t~l~~a~~~~~----~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ||||+|+..+.    ..++.+++++|++.|++.+.
T Consensus       256 TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~  290 (437)
T PHA02795        256 TCLDVAVDRGSVIARRETHLKILEILLREPLSIDC  290 (437)
T ss_pred             CHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCc
Confidence            99999998431    11357999999999998765

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=1.8e-27  Score=204.01  Aligned_cols=178  Identities=15%  Similarity=0.114  Sum_probs=154.8

Q ss_pred             ccccccccCCCChHHHHHHhC-----CCHHHHHHHhhcCccccccccCCCCcHHHHHHHcC---CHHHHHHHHHhCCccc
Q 025505            6 PQLASIKNQRGETTMHLLSTD-----GDAETVRIFGEINRELCLEVDNSSMIPLHRAALDG---NSDVIRALVSICPESL   77 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~-----g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~   77 (252)
                      +.-++..|..|.||||.|+..     +..+++++|+++|++++. .+..|.||||+|+..+   +.+++++|+++| +++
T Consensus        61 Gadvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~GadiN~-~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G-adv  138 (489)
T PHA02798         61 GANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENGADINK-KNSDGETPLYCLLSNGYINNLEILLFMIENG-ADT  138 (489)
T ss_pred             CCCCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCCCCCCC-CCCCcCcHHHHHHHcCCcChHHHHHHHHHcC-CCc
Confidence            334778899999999998864     678999999999999998 8999999999999875   789999999999 789


Q ss_pred             cccCCCCchHHHHHHHcCC---hHHHHHHHHHHhcccccccccccC-CCCCcHHHHHHhC----ChHHHHHHHHhccccc
Q 025505           78 EKLTSNGETALHLAVKKSR---SDAFEALVDEAKNHRKEHLFTWKD-KEGNTVLHLATLN----KLKQIVELLIRENSNR  149 (252)
Q Consensus        78 ~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~----~~~~~v~~Ll~~~~~~  149 (252)
                      +.+|..|.||||+|+..++   .+++++|++.|+      +++..+ ..|.||||.++..    ++.+++++|++.|+..
T Consensus       139 n~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~ga------din~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i  212 (489)
T PHA02798        139 TLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGV------DINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFII  212 (489)
T ss_pred             cccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCC------CcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCc
Confidence            9999999999999999988   999999999998      677764 5789999998764    4789999999877531


Q ss_pred             c---------------------------------eeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          150 R---------------------------------IMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       150 ~---------------------------------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      .                                 .+++++.+|..|+||||+|+.    .++.+++++|++.|++++..
T Consensus       213 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d~~G~TPL~~A~~----~~~~~~v~~LL~~GAdin~~  287 (489)
T PHA02798        213 NKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVDELGFNPLYYSVS----HNNRKIFEYLLQLGGDINII  287 (489)
T ss_pred             ccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcCcCCccHHHHHHH----cCcHHHHHHHHHcCCccccc
Confidence            1                                 135778889999999999998    88999999999999999864

>PHA02946 ankyin-like protein; Provisional

Probab=99.95  E-value=2e-27  Score=200.43  Aligned_cols=169  Identities=18%  Similarity=0.199  Sum_probs=149.1

Q ss_pred             ccccccccCCCChHHHHHHhCCC--HHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCC
Q 025505            6 PQLASIKNQRGETTMHLLSTDGD--AETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSN   83 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~--~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   83 (252)
                      +.-++.+|..|+||||+|+..++  .+++++|+++|++++...+..|.|||| |+..|+.+++++|++.+ .+++.+|..
T Consensus        95 GAdin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~g-ad~~~~d~~  172 (446)
T PHA02946         95 GADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIG-FEARIVDKF  172 (446)
T ss_pred             cCCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcccccCCCCCcHHH-HHHCCChHHHHHHHhcc-ccccccCCC
Confidence            34478899999999999998664  899999999999998657899999997 66779999999999999 788999999


Q ss_pred             CchHHHHHHHcCC--hHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCC--hHHHHHHHHhcccccceeeeeeccc
Q 025505           84 GETALHLAVKKSR--SDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNK--LKQIVELLIRENSNRRIMIRINTVN  159 (252)
Q Consensus        84 g~t~L~~a~~~~~--~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~--~~~~v~~Ll~~~~~~~~~~~~~~~~  159 (252)
                      |.||||+|+..++  .+++++|++.|+      +++.+|..|+||||+|+..+  +.+++++|+       .+++++.+|
T Consensus       173 G~t~Lh~A~~~~~~~~~~v~~Ll~~Ga------din~~d~~G~TpLH~Aa~~~~~~~~iv~lLl-------~gadin~~d  239 (446)
T PHA02946        173 GKNHIHRHLMSDNPKASTISWMMKLGI------SPSKPDHDGNTPLHIVCSKTVKNVDIINLLL-------PSTDVNKQN  239 (446)
T ss_pred             CCCHHHHHHHhcCCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHcCCCcHHHHHHHH-------cCCCCCCCC
Confidence            9999999987654  689999999999      89999999999999999876  789999988       468999999


Q ss_pred             CCCCCHhHhhhhcCCCchh-HHHHHHHHHhccccC
Q 025505          160 KEGQTTLQLCNANSQDSAF-KEIGWIIQRAIAQQS  193 (252)
Q Consensus       160 ~~g~t~l~~a~~~~~~~~~-~~~~~~L~~~ga~~~  193 (252)
                      ..|.||||+|+.    .++ .+++++|++.|+...
T Consensus       240 ~~G~TpLh~A~~----~~~~~~~~~~Ll~~g~~~~  270 (446)
T PHA02946        240 KFGDSPLTLLIK----TLSPAHLINKLLSTSNVIT  270 (446)
T ss_pred             CCCCCHHHHHHH----hCChHHHHHHHHhCCCCCC
Confidence            999999999987    545 589999999987653

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=5.6e-27  Score=200.69  Aligned_cols=178  Identities=21%  Similarity=0.185  Sum_probs=135.9

Q ss_pred             ccccccccCCCChHHHHHHhCC-CHHHHHHHhhcCccccccccCCCCcHHHHHH--HcCCHHHHHHHHHhCCccccccCC
Q 025505            6 PQLASIKNQRGETTMHLLSTDG-DAETVRIFGEINRELCLEVDNSSMIPLHRAA--LDGNSDVIRALVSICPESLEKLTS   82 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~   82 (252)
                      +..++.+|..|.||||+|+..| ..+++++|++.|++++. .+..|.||||+|+  ..++.+++++|++++ .+++..+.
T Consensus        73 Gadin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~in~-~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g-ad~~~~d~  150 (471)
T PHA03095         73 GADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGADVNA-KDKVGRTPLHVYLSGFNINPKVIRLLLRKG-ADVNALDL  150 (471)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHhhCCcCCHHHHHHHHHcC-CCCCccCC
Confidence            4447788888999999999888 58899999999888887 8888889999888  456788888888888 67777888


Q ss_pred             CCchHHHHHHHcC--ChHHHHHHHHHHhccc-----------------------------ccccccccCCCCCcHHHHHH
Q 025505           83 NGETALHLAVKKS--RSDAFEALVDEAKNHR-----------------------------KEHLFTWKDKEGNTVLHLAT  131 (252)
Q Consensus        83 ~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~-----------------------------~~~~~~~~~~~g~t~Lh~A~  131 (252)
                      .|.||||+|+..+  ..+++++|++.+++..                             ...+++.+|..|+||||+|+
T Consensus       151 ~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa  230 (471)
T PHA03095        151 YGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMA  230 (471)
T ss_pred             CCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHH
Confidence            8888888877655  4667777777665321                             01144556666667777766


Q ss_pred             hCChH--HHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          132 LNKLK--QIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       132 ~~~~~--~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      ..++.  .+++.|++      .|++++.+|..|+||||+|+.    .++.+++++|++.|++++..
T Consensus       231 ~~~~~~~~~v~~ll~------~g~din~~d~~g~TpLh~A~~----~~~~~~v~~LL~~gad~n~~  286 (471)
T PHA03095        231 TGSSCKRSLVLPLLI------AGISINARNRYGQTPLHYAAV----FNNPRACRRLIALGADINAV  286 (471)
T ss_pred             hcCCchHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCccc
Confidence            66643  46666664      788889999999999999988    77889999999999988753

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=8.9e-27  Score=207.30  Aligned_cols=169  Identities=21%  Similarity=0.249  Sum_probs=115.7

Q ss_pred             cccccCCCChHHHHHHhCC-CHHHHHHHhhcCccccccccCCCCcHHHHHHHc-CCHHHHHHHHHhCCccccccCCCCch
Q 025505            9 ASIKNQRGETTMHLLSTDG-DAETVRIFGEINRELCLEVDNSSMIPLHRAALD-GNSDVIRALVSICPESLEKLTSNGET   86 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~~~g~t   86 (252)
                      ++.+|..|.||||+|+..| +.++++.|+..|++++. .+..|.||||+|+.. ++.+++++|++.+ .+++.+|..|.|
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~gadin~-~d~~g~TpLh~A~~~~~~~~iv~lLl~~g-adin~~d~~G~T  377 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNA-ADRLYITPLHQASTLDRNKDIVITLLELG-ANVNARDYCDKT  377 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcCCCCCC-cccCCCcHHHHHHHhCCcHHHHHHHHHcC-CCCccCCCCCCC
Confidence            4455556666666666665 35666666666666555 556666666666553 3456666666666 556666666777


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCCh-HHHHHHHHhcccccceeeeeecccCCCCCH
Q 025505           87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKL-KQIVELLIRENSNRRIMIRINTVNKEGQTT  165 (252)
Q Consensus        87 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  165 (252)
                      |||+|+..++.+++++|++.++      +++..+..|.||||+|+..+. ..++++|++      .|++++.+|..|+||
T Consensus       378 pLh~Aa~~~~~~iv~~Ll~~ga------d~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~------~gadin~~d~~G~Tp  445 (682)
T PHA02876        378 PIHYAAVRNNVVIINTLLDYGA------DIEALSQKIGTALHFALCGTNPYMSVKTLID------RGANVNSKNKDLSTP  445 (682)
T ss_pred             HHHHHHHcCCHHHHHHHHHCCC------CccccCCCCCchHHHHHHcCCHHHHHHHHHh------CCCCCCcCCCCCChH
Confidence            7777777777777777776666      566666666677777665443 355666664      788999999999999


Q ss_pred             hHhhhhcCCCch-hHHHHHHHHHhccccCCC
Q 025505          166 LQLCNANSQDSA-FKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       166 l~~a~~~~~~~~-~~~~~~~L~~~ga~~~~~  195 (252)
                      ||+|+.    .+ +.+++++|+++|++++..
T Consensus       446 Lh~Aa~----~~~~~~iv~lLl~~Gad~n~~  472 (682)
T PHA02876        446 LHYACK----KNCKLDVIEMLLDNGADVNAI  472 (682)
T ss_pred             HHHHHH----hCCcHHHHHHHHHCCCCCCCC
Confidence            999986    44 579999999999998763

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=7.9e-27  Score=199.77  Aligned_cols=168  Identities=19%  Similarity=0.200  Sum_probs=121.3

Q ss_pred             cccccCCCChHHHHHH--hCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcC--CHHHHHHHHHhCC----------
Q 025505            9 ASIKNQRGETTMHLLS--TDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDG--NSDVIRALVSICP----------   74 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~--~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~----------   74 (252)
                      ++.+|..|.||||+|+  ..++.+++++|++.|++++. .+..|.||||+|+..+  +.+++++|++++.          
T Consensus       110 in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~-~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~  188 (471)
T PHA03095        110 VNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNA-LDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFR  188 (471)
T ss_pred             CCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCC
Confidence            5556666666666666  34456666666666666554 5555555555555433  3444555554441          


Q ss_pred             ------------------------ccccccCCCCchHHHHHHHcCCh--HHHHHHHHHHhcccccccccccCCCCCcHHH
Q 025505           75 ------------------------ESLEKLTSNGETALHLAVKKSRS--DAFEALVDEAKNHRKEHLFTWKDKEGNTVLH  128 (252)
Q Consensus        75 ------------------------~~~~~~~~~g~t~L~~a~~~~~~--~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh  128 (252)
                                              .+++.+|..|.||||+|+..++.  .+++.|++.+.      +++.+|..|+||||
T Consensus       189 t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~------din~~d~~g~TpLh  262 (471)
T PHA03095        189 SLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGI------SINARNRYGQTPLH  262 (471)
T ss_pred             CHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCC------CCCCcCCCCCCHHH
Confidence                                    34455555666666666665543  35666666666      78999999999999


Q ss_pred             HHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       129 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      +|+..|+.+++++|++      .|++++.+|..|+||||+|+.    .++.++++.|++.+++.+
T Consensus       263 ~A~~~~~~~~v~~LL~------~gad~n~~~~~g~tpl~~A~~----~~~~~~v~~LL~~~~~~~  317 (471)
T PHA03095        263 YAAVFNNPRACRRLIA------LGADINAVSSDGNTPLSLMVR----NNNGRAVRAALAKNPSAE  317 (471)
T ss_pred             HHHHcCCHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----hCCHHHHHHHHHhCCCHH
Confidence            9999999999999996      899999999999999999999    889999999999998774

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.95  E-value=1.3e-26  Score=206.34  Aligned_cols=179  Identities=17%  Similarity=0.117  Sum_probs=119.1

Q ss_pred             CccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC----------
Q 025505            5 WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICP----------   74 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~----------   74 (252)
                      .+..++.+|..|.||||+|+..|+.++|++|+++|++++. .+..|.||||+|+..|+.++++.|++.++          
T Consensus       167 ~Gadvn~~d~~G~TpLh~Aa~~G~~~iv~~LL~~Gad~n~-~~~~g~t~L~~A~~~~~~~ivk~Ll~~~~~~~~~~~~L~  245 (682)
T PHA02876        167 GGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNI-IALDDLSVLECAVDSKNIDTIKAIIDNRSNINKNDLSLL  245 (682)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCc-cCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCcHHHH
Confidence            3445788999999999999999999999999999998875 55666666666666666655555544321          


Q ss_pred             ------------------ccccccCCCCchHHHHHHHcCCh-HHHHHHHHHHhccc------------------------
Q 025505           75 ------------------ESLEKLTSNGETALHLAVKKSRS-DAFEALVDEAKNHR------------------------  111 (252)
Q Consensus        75 ------------------~~~~~~~~~g~t~L~~a~~~~~~-~~~~~Ll~~~~~~~------------------------  111 (252)
                                        .+++..+..|.||||+|+..++. +++++|++.+++.+                        
T Consensus       246 ~ai~~~~~~~~~~Ll~~g~~vn~~d~~g~TpLh~Aa~~~~~~~iv~lLl~~gadin~~d~~g~TpLh~Aa~~g~~~~~v~  325 (682)
T PHA02876        246 KAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLMAKNGYDTENIR  325 (682)
T ss_pred             HHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCCHHHHH
Confidence                              12333444555555555555553 35555555554100                        


Q ss_pred             ----ccccccccCCCCCcHHHHHHhC-ChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHH
Q 025505          112 ----KEHLFTWKDKEGNTVLHLATLN-KLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQ  186 (252)
Q Consensus       112 ----~~~~~~~~~~~g~t~Lh~A~~~-~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~  186 (252)
                          ...+++..+..|.||||+|+.. +..+++++|++      .|++++.+|..|+||||+|+.    .++.+++++|+
T Consensus       326 ~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~------~gadin~~d~~G~TpLh~Aa~----~~~~~iv~~Ll  395 (682)
T PHA02876        326 TLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLE------LGANVNARDYCDKTPIHYAAV----RNNVVIINTLL  395 (682)
T ss_pred             HHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHH------cCCCCccCCCCCCCHHHHHHH----cCCHHHHHHHH
Confidence                0004444555555555555543 24455555653      788888888899999999888    78889999999


Q ss_pred             HhccccCC
Q 025505          187 RAIAQQSP  194 (252)
Q Consensus       187 ~~ga~~~~  194 (252)
                      ++|++.+.
T Consensus       396 ~~gad~~~  403 (682)
T PHA02876        396 DYGADIEA  403 (682)
T ss_pred             HCCCCccc
Confidence            99988765

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=2.8e-27  Score=200.22  Aligned_cols=151  Identities=26%  Similarity=0.331  Sum_probs=140.0

Q ss_pred             CccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHH-hCCccccccCCC
Q 025505            5 WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS-ICPESLEKLTSN   83 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~   83 (252)
                      ..++++..|++|+||||+||+.|+.++++.|+..|++++. ++.++.||||.||.+|+.++++.|++ .+....+..|..
T Consensus       262 ~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~-kn~d~~spLH~AA~yg~~ntv~rLL~~~~~rllne~D~~  340 (929)
T KOG0510|consen  262 EKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINS-KNKDEESPLHFAAIYGRINTVERLLQESDTRLLNESDLH  340 (929)
T ss_pred             HHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcccc-cCCCCCCchHHHHHcccHHHHHHHHhCcCcccccccccc
Confidence            4578899999999999999999999999999999999998 99999999999999999999999999 554567888999


Q ss_pred             CchHHHHHHHcCChHHHHHHHHHHhccccccccc---ccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccC
Q 025505           84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFT---WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (252)
Q Consensus        84 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  160 (252)
                      |.||||+|++.||..++++|++.|+.      ..   ..|.+|+||||.|+..|+..+|++|++      +|++++.+|+
T Consensus       341 g~tpLHlaa~~gH~~v~qlLl~~GA~------~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~------~Ga~I~~~n~  408 (929)
T KOG0510|consen  341 GMTPLHLAAKSGHDRVVQLLLNKGAL------FLNMSEADSDGNTALHLAAKYGNTSAVQKLIS------HGADIGVKNK  408 (929)
T ss_pred             CCCchhhhhhcCHHHHHHHHHhcChh------hhcccccccCCchhhhHHHHhccHHHHHHHHH------cCCceeeccc
Confidence            99999999999999999999999993      33   459999999999999999999999996      9999999999


Q ss_pred             CCCCHhHh
Q 025505          161 EGQTTLQL  168 (252)
Q Consensus       161 ~g~t~l~~  168 (252)
                      .|.|++++
T Consensus       409 ~g~SA~~~  416 (929)
T KOG0510|consen  409 KGKSAFDT  416 (929)
T ss_pred             cccccccc
Confidence            99999883

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=3.2e-26  Score=206.68  Aligned_cols=164  Identities=18%  Similarity=0.207  Sum_probs=150.7

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      +..+.++||.||..|+.++++.|++.|++++. .|..|.||||+|+..|+.+++++|++++ ++++.+|.+|.||||+|+
T Consensus       522 ~~~~~~~L~~Aa~~g~~~~l~~Ll~~G~d~n~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g-adin~~d~~G~TpL~~A~  599 (823)
T PLN03192        522 DPNMASNLLTVASTGNAALLEELLKAKLDPDI-GDSKGRTPLHIAASKGYEDCVLVLLKHA-CNVHIRDANGNTALWNAI  599 (823)
T ss_pred             CccchhHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHhcC-CCCCCcCCCCCCHHHHHH
Confidence            44567999999999999999999999999998 9999999999999999999999999998 789999999999999999


Q ss_pred             HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhc
Q 025505           93 KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN  172 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  172 (252)
                      ..|+.+++++|++.+.      ..+  ...+.++||+|+..|+.+++++|++      .|++++.+|..|+||||+|+. 
T Consensus       600 ~~g~~~iv~~L~~~~~------~~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~------~Gadin~~d~~G~TpLh~A~~-  664 (823)
T PLN03192        600 SAKHHKIFRILYHFAS------ISD--PHAAGDLLCTAAKRNDLTAMKELLK------QGLNVDSEDHQGATALQVAMA-  664 (823)
T ss_pred             HhCCHHHHHHHHhcCc------ccC--cccCchHHHHHHHhCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH-
Confidence            9999999999998766      222  3457799999999999999999996      899999999999999999999 


Q ss_pred             CCCchhHHHHHHHHHhccccCCCC
Q 025505          173 SQDSAFKEIGWIIQRAIAQQSPQL  196 (252)
Q Consensus       173 ~~~~~~~~~~~~L~~~ga~~~~~~  196 (252)
                         .++.+++++|+++|++++...
T Consensus       665 ---~g~~~iv~~Ll~~GAdv~~~~  685 (823)
T PLN03192        665 ---EDHVDMVRLLIMNGADVDKAN  685 (823)
T ss_pred             ---CCcHHHHHHHHHcCCCCCCCC
Confidence               889999999999999987643

>PHA02917 ankyrin-like protein; Provisional

Probab=99.94  E-value=1.5e-26  Score=202.25  Aligned_cols=170  Identities=18%  Similarity=0.214  Sum_probs=140.1

Q ss_pred             CccccccccCCCChHHHHHHhC---CCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCC-------------------
Q 025505            5 WPQLASIKNQRGETTMHLLSTD---GDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGN-------------------   62 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-------------------   62 (252)
                      ....++..|.+|+||||+||..   |+.++|++|++.|++++. .+..|+||||+|+..|+                   
T Consensus        21 ~~~~~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~ga~v~~-~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n   99 (661)
T PHA02917         21 DRDPNDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSGTNPLH-KNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSN   99 (661)
T ss_pred             ccCcccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCCCCccc-cCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCC
Confidence            3444577899999999997655   889999999999999987 89999999998887554                   


Q ss_pred             ----------------HHHHHHHHHhCCccccccCCCCchHHHHHH--HcCChHHHHHHHHHHhcccccccccccCC---
Q 025505           63 ----------------SDVIRALVSICPESLEKLTSNGETALHLAV--KKSRSDAFEALVDEAKNHRKEHLFTWKDK---  121 (252)
Q Consensus        63 ----------------~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~--~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~---  121 (252)
                                      .+++++|+++| ++++.+|..|.||||.++  ..++.+++++|+++|+      +++..|.   
T Consensus       100 ~~~~~~~~~~a~~~~~~e~vk~Ll~~G-adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga------~vn~~d~~~~  172 (661)
T PHA02917        100 INDFNIFSYMKSKNVDVDLIKVLVEHG-FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGC------SVLYEDEDDE  172 (661)
T ss_pred             CCCcchHHHHHhhcCCHHHHHHHHHcC-CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCC------Cccccccccc
Confidence                            45666677777 678888999999999643  5789999999999999      5554432   


Q ss_pred             CC-----------CcHHHHHHh-----------CChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchh-
Q 025505          122 EG-----------NTVLHLATL-----------NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAF-  178 (252)
Q Consensus       122 ~g-----------~t~Lh~A~~-----------~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~-  178 (252)
                      .|           .||||+|+.           .++.+++++|++      .|++++.+|..|.||||+|+.    .++ 
T Consensus       173 ~g~~~~~~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~------~Gadvn~~d~~G~TpLh~A~~----~g~~  242 (661)
T PHA02917        173 YGYAYDDYQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLIN------HGIKPSSIDKNYCTALQYYIK----SSHI  242 (661)
T ss_pred             cccccccccccccccHHHHHHhhcccccccccccCcHHHHHHHHH------CCCCcccCCCCCCcHHHHHHH----cCCC
Confidence            23           599999986           457899999996      999999999999999999998    554 


Q ss_pred             -HHHHHHHHHhccccC
Q 025505          179 -KEIGWIIQRAIAQQS  193 (252)
Q Consensus       179 -~~~~~~L~~~ga~~~  193 (252)
                       .+++++|++ |++..
T Consensus       243 ~~eivk~Li~-g~d~~  257 (661)
T PHA02917        243 DIDIVKLLMK-GIDNT  257 (661)
T ss_pred             cHHHHHHHHh-CCccc
Confidence             489999975 87664

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=3e-26  Score=196.72  Aligned_cols=175  Identities=17%  Similarity=0.163  Sum_probs=144.4

Q ss_pred             ccccccCCCChHHHHHHhCC------CHHHHHHHhhcCccccccccCCCCcHHHHHHHc---CCHHHHHHHHHhCCccc-
Q 025505            8 LASIKNQRGETTMHLLSTDG------DAETVRIFGEINRELCLEVDNSSMIPLHRAALD---GNSDVIRALVSICPESL-   77 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g------~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~-   77 (252)
                      -++.++ .+.||||.|+..+      +.+++++|+++|++++. .+..|.||||.|+..   ++.+++++|+++| +++ 
T Consensus        62 dvn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gadin~-~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G-adin  138 (494)
T PHA02989         62 DVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGADINL-KTFNGVSPIVCFIYNSNINNCDMLRFLLSKG-INVN  138 (494)
T ss_pred             CccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHhcccCcHHHHHHHHHCC-CCcc
Confidence            355554 5789999887654      46899999999999987 888999999988765   6789999999999 677 


Q ss_pred             cccCCCCchHHHHHHHc--CChHHHHHHHHHHhcccccccccc-cCCCCCcHHHHHHhCC----hHHHHHHHHhcccccc
Q 025505           78 EKLTSNGETALHLAVKK--SRSDAFEALVDEAKNHRKEHLFTW-KDKEGNTVLHLATLNK----LKQIVELLIRENSNRR  150 (252)
Q Consensus        78 ~~~~~~g~t~L~~a~~~--~~~~~~~~Ll~~~~~~~~~~~~~~-~~~~g~t~Lh~A~~~~----~~~~v~~Ll~~~~~~~  150 (252)
                      +.++..|.||||+|+..  ++.+++++|+++|+      +++. .+..|.||||+|+..+    +.+++++|++.|++..
T Consensus       139 ~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Ga------di~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn  212 (494)
T PHA02989        139 DVKNSRGYNLLHMYLESFSVKKDVIKILLSFGV------NLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIE  212 (494)
T ss_pred             cccCCCCCCHHHHHHHhccCCHHHHHHHHHcCC------CccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCcc
Confidence            78899999999998764  57899999999998      6666 5778999999987654    7899999998776411


Q ss_pred             --------------------------------eeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          151 --------------------------------IMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       151 --------------------------------~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                                                      .+++++.+|..|+||||+|+.    .++.+++++|++.|++++..
T Consensus       213 ~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~~G~TpL~~Aa~----~~~~~~v~~LL~~Gadin~~  285 (494)
T PHA02989        213 TNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDKKGFNPLLISAK----VDNYEAFNYLLKLGDDIYNV  285 (494)
T ss_pred             ccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCCCCCCHHHHHHH----hcCHHHHHHHHHcCCCcccc
Confidence                                            235677888899999999998    88999999999999999864

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.94  E-value=1.3e-26  Score=192.09  Aligned_cols=170  Identities=24%  Similarity=0.228  Sum_probs=153.5

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC-CCCchHHHHHHH
Q 025505           16 GETTMHLLSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT-SNGETALHLAVK   93 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~~a~~   93 (252)
                      ..+.+..|+.+|..+.|+.|++. +.+++. .|.+|.|+||||+..++.+++++|++++ ++++... .-+.||||+|++
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~g~~v~~-~D~~g~tlLHWAAiNNrl~v~r~li~~g-advn~~gG~l~stPLHWAar  121 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESEGESVNN-PDREGVTLLHWAAINNRLDVARYLISHG-ADVNAIGGVLGSTPLHWAAR  121 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhcCcCCCC-CCcCCccceeHHHHcCcHHHHHHHHHcC-CCccccCCCCCCCcchHHHH
Confidence            34668999999999999999998 888877 8999999999999999999999999999 6778777 778999999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcC
Q 025505           94 KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANS  173 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~  173 (252)
                      +|+..++++|+++|+      +++.+|.+|.|+||+|+..++..+|-+|+.      +++++|.+|.+|+||||+|+.  
T Consensus       122 ~G~~~vv~lLlqhGA------dpt~~D~~G~~~lHla~~~~~~~~vayll~------~~~d~d~~D~~grTpLmwAay--  187 (600)
T KOG0509|consen  122 NGHISVVDLLLQHGA------DPTLKDKQGLTPLHLAAQFGHTALVAYLLS------KGADIDLRDNNGRTPLMWAAY--  187 (600)
T ss_pred             cCcHHHHHHHHHcCC------CCceecCCCCcHHHHHHHhCchHHHHHHHH------hcccCCCcCCCCCCHHHHHHH--
Confidence            999999999999999      899999999999999999999999999996      889999999999999999998  


Q ss_pred             CCchhHHHHHHHHHhccccCCCCCCCCCCC
Q 025505          174 QDSAFKEIGWIIQRAIAQQSPQLPADGAAN  203 (252)
Q Consensus       174 ~~~~~~~~~~~L~~~ga~~~~~~~~~~~~~  203 (252)
                        ++....++.|++.|+.........+.+|
T Consensus       188 --kg~~~~v~~LL~f~a~~~~~d~~~g~Tp  215 (600)
T KOG0509|consen  188 --KGFALFVRRLLKFGASLLLTDDNHGNTP  215 (600)
T ss_pred             --hcccHHHHHHHHhcccccccccccCCch
Confidence              6666669999999999876543444433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.5e-26  Score=185.25  Aligned_cols=156  Identities=24%  Similarity=0.311  Sum_probs=145.8

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      .-.|.+||..|+..||.++|+.|+++|++++. ......|||--||..|+.+++++|++++ ++++..++.|.|+|++|+
T Consensus        81 ~IegappLWaAsaAGHl~vVk~L~~~ga~VN~-tT~TNStPLraACfDG~leivKyLvE~g-ad~~IanrhGhTcLmIa~  158 (615)
T KOG0508|consen   81 TIEGAPPLWAASAAGHLEVVKLLLRRGASVND-TTRTNSTPLRAACFDGHLEIVKYLVEHG-ADPEIANRHGHTCLMIAC  158 (615)
T ss_pred             ccCCCchhhHHhccCcHHHHHHHHHhcCcccc-ccccCCccHHHHHhcchhHHHHHHHHcC-CCCcccccCCCeeEEeee
Confidence            45788999999999999999999999999987 7777889999999999999999999999 899999999999999999


Q ss_pred             HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhc
Q 025505           93 KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN  172 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  172 (252)
                      ..|+.+|+++|++.|+      ++|.++..|+|+||.|+..|+.+++++|++      +|+.++ +|..|-|||..|.. 
T Consensus       159 ykGh~~I~qyLle~gA------Dvn~ks~kGNTALH~caEsG~vdivq~Ll~------~ga~i~-~d~~GmtPL~~Aa~-  224 (615)
T KOG0508|consen  159 YKGHVDIAQYLLEQGA------DVNAKSYKGNTALHDCAESGSVDIVQLLLK------HGAKID-VDGHGMTPLLLAAV-  224 (615)
T ss_pred             ccCchHHHHHHHHhCC------CcchhcccCchHHHhhhhcccHHHHHHHHh------CCceee-ecCCCCchHHHHhh-
Confidence            9999999999999999      899999999999999999999999999996      666665 55669999999998 


Q ss_pred             CCCchhHHHHHHHHH
Q 025505          173 SQDSAFKEIGWIIQR  187 (252)
Q Consensus       173 ~~~~~~~~~~~~L~~  187 (252)
                         .+..+++++|++
T Consensus       225 ---tG~~~iVe~L~~  236 (615)
T KOG0508|consen  225 ---TGHTDIVERLLQ  236 (615)
T ss_pred             ---hcchHHHHHHhc
Confidence               889999999996

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=178.84  Aligned_cols=162  Identities=23%  Similarity=0.347  Sum_probs=146.1

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCc-cccccccCCCCcHHHHHHHc-----CCHHHHHHHHHhCCcccccc-C
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINR-ELCLEVDNSSMIPLHRAALD-----GNSDVIRALVSICPESLEKL-T   81 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~Lh~A~~~-----g~~~~v~~Ll~~~~~~~~~~-~   81 (252)
                      +|.-|.+|+|+|||++.++++++|+.||+.|. +++. .+.-|.||+++++..     .+..+|..|+..+.  +|.+ .
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~-qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn--VNaKAs  337 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQ-QNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD--VNAKAS  337 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccCcccccc-cccccccHHHHHHHHhhcchhhHHHHHHHHhccC--cchhhh
Confidence            67889999999999999999999999999885 4544 889999999998764     46789999999983  3443 5


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.|+|++|+.+|+.++++.|+..++      ++|.+|.+|.|+|++||..|+.+++++||.     ..++++...|.+
T Consensus       338 Q~gQTALMLAVSHGr~d~vk~LLacgA------dVNiQDdDGSTALMCA~EHGhkEivklLLA-----~p~cd~sLtD~D  406 (452)
T KOG0514|consen  338 QHGQTALMLAVSHGRVDMVKALLACGA------DVNIQDDDGSTALMCAAEHGHKEIVKLLLA-----VPSCDISLTDVD  406 (452)
T ss_pred             hhcchhhhhhhhcCcHHHHHHHHHccC------CCccccCCccHHHhhhhhhChHHHHHHHhc-----cCcccceeecCC
Confidence            679999999999999999999999999      899999999999999999999999999998     789999999999


Q ss_pred             CCCHhHhhhhcCCCchhHHHHHHHHHh
Q 025505          162 GQTTLQLCNANSQDSAFKEIGWIIQRA  188 (252)
Q Consensus       162 g~t~l~~a~~~~~~~~~~~~~~~L~~~  188 (252)
                      |.|+|.+|..    .++.||..+|..+
T Consensus       407 gSTAl~IAle----agh~eIa~mlYa~  429 (452)
T KOG0514|consen  407 GSTALSIALE----AGHREIAVMLYAH  429 (452)
T ss_pred             CchhhhhHHh----cCchHHHHHHHHH
Confidence            9999999999    8889999888754

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=1.6e-26  Score=185.12  Aligned_cols=166  Identities=20%  Similarity=0.231  Sum_probs=151.2

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhc-Cccccc-------cccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCC
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEI-NRELCL-------EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNG   84 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~-------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   84 (252)
                      +.+|.|||.+||++|+.++|++|+++ ++++..       -...+|-+||-.|+..||.++|+.|++++ +.+|......
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~g-a~VN~tT~TN  117 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHCRASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRG-ASVNDTTRTN  117 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHhcCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhc-CccccccccC
Confidence            46788999999999999999999994 444321       02347889999999999999999999999 8899988889


Q ss_pred             chHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCC
Q 025505           85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT  164 (252)
Q Consensus        85 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t  164 (252)
                      .|||--||.-|+.+++++|+++++      +++..+..|.|.||+||..|+.+|+++|++      .|+|++.++..|+|
T Consensus       118 StPLraACfDG~leivKyLvE~ga------d~~IanrhGhTcLmIa~ykGh~~I~qyLle------~gADvn~ks~kGNT  185 (615)
T KOG0508|consen  118 STPLRAACFDGHLEIVKYLVEHGA------DPEIANRHGHTCLMIACYKGHVDIAQYLLE------QGADVNAKSYKGNT  185 (615)
T ss_pred             CccHHHHHhcchhHHHHHHHHcCC------CCcccccCCCeeEEeeeccCchHHHHHHHH------hCCCcchhcccCch
Confidence            999999999999999999999999      899999999999999999999999999996      99999999999999


Q ss_pred             HhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          165 TLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       165 ~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      +||.|++    .++.+++++|+++|+.+...
T Consensus       186 ALH~caE----sG~vdivq~Ll~~ga~i~~d  212 (615)
T KOG0508|consen  186 ALHDCAE----SGSVDIVQLLLKHGAKIDVD  212 (615)
T ss_pred             HHHhhhh----cccHHHHHHHHhCCceeeec
Confidence            9999999    89999999999999988754

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=5.2e-24  Score=156.78  Aligned_cols=141  Identities=17%  Similarity=0.137  Sum_probs=124.4

Q ss_pred             cccccCCCChHHHHHHhCCCH----HHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHH---HHHHHHhCCccccccC
Q 025505            9 ASIKNQRGETTMHLLSTDGDA----ETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV---IRALVSICPESLEKLT   81 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~---v~~Ll~~~~~~~~~~~   81 (252)
                      +...+..+.++||.||+.|+.    ++++.|++.+..++. .|..|+||||+|+..|+.+.   +++|++++ .+++.++
T Consensus        13 ~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~~~~-~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G-adin~~d   90 (166)
T PHA02743         13 AVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHLLHR-YDHHGRQCTHMVAWYDRANAVMKIELLVNMG-ADINARE   90 (166)
T ss_pred             HhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchhhhc-cCCCCCcHHHHHHHhCccCHHHHHHHHHHcC-CCCCCCC
Confidence            445678899999999999998    566678888888876 89999999999999988654   88999999 7888888


Q ss_pred             -CCCchHHHHHHHcCChHHHHHHHH-HHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeeccc
Q 025505           82 -SNGETALHLAVKKSRSDAFEALVD-EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN  159 (252)
Q Consensus        82 -~~g~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  159 (252)
                       ..|.||||+|+..++.+++++|+. .+.      +++.++..|.||||+|+..++.+++++|++      .|++++.++
T Consensus        91 ~~~g~TpLh~A~~~g~~~iv~~Ll~~~ga------d~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~------~ga~~~~~~  158 (166)
T PHA02743         91 LGTGNTLLHIAASTKNYELAEWLCRQLGV------NLGAINYQHETAYHIAYKMRDRRMMEILRA------NGAVCDDPL  158 (166)
T ss_pred             CCCCCcHHHHHHHhCCHHHHHHHHhccCC------CccCcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcc
Confidence             589999999999999999999995 687      788899999999999999999999999996      888888888


Q ss_pred             CCCC
Q 025505          160 KEGQ  163 (252)
Q Consensus       160 ~~g~  163 (252)
                      ..|.
T Consensus       159 ~~~~  162 (166)
T PHA02743        159 SIGL  162 (166)
T ss_pred             cCCc
Confidence            7764

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.91  E-value=7.2e-24  Score=156.04  Aligned_cols=142  Identities=20%  Similarity=0.246  Sum_probs=123.2

Q ss_pred             cCccccccccCCCCcHHHHHHHcCCH----HHHHHHHHhCCccccccCCCCchHHHHHHHcCChHH---HHHHHHHHhcc
Q 025505           38 INRELCLEVDNSSMIPLHRAALDGNS----DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA---FEALVDEAKNH  110 (252)
Q Consensus        38 ~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~---~~~Ll~~~~~~  110 (252)
                      ++.++.. .+..+.++||.||..|+.    +++++|++.+ ..++.+|..|.||||+|+..++.+.   +++|++.++  
T Consensus         9 ~~~~~~~-~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g-~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Ga--   84 (166)
T PHA02743          9 NNLGAVE-IDEDEQNTFLRICRTGNIYELMEVAPFISGDG-HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGA--   84 (166)
T ss_pred             cchHHhh-hccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc-hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCC--
Confidence            3455555 667888999999999998    5566677777 5778889999999999999988664   799999999  


Q ss_pred             cccccccccC-CCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhc
Q 025505          111 RKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAI  189 (252)
Q Consensus       111 ~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~g  189 (252)
                          +++.++ ..|+||||+|+..++.+++++|++     +.+++++.+|..|.||||+|..    .++.+++++|+++|
T Consensus        85 ----din~~d~~~g~TpLh~A~~~g~~~iv~~Ll~-----~~gad~~~~d~~g~tpL~~A~~----~~~~~iv~~Ll~~g  151 (166)
T PHA02743         85 ----DINARELGTGNTLLHIAASTKNYELAEWLCR-----QLGVNLGAINYQHETAYHIAYK----MRDRRMMEILRANG  151 (166)
T ss_pred             ----CCCCCCCCCCCcHHHHHHHhCCHHHHHHHHh-----ccCCCccCcCCCCCCHHHHHHH----cCCHHHHHHHHHcC
Confidence                788888 589999999999999999999995     4799999999999999999998    88899999999999


Q ss_pred             cccCCCC
Q 025505          190 AQQSPQL  196 (252)
Q Consensus       190 a~~~~~~  196 (252)
                      ++.+...
T Consensus       152 a~~~~~~  158 (166)
T PHA02743        152 AVCDDPL  158 (166)
T ss_pred             CCCCCcc
Confidence            9997643

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.91  E-value=9.6e-24  Score=190.65  Aligned_cols=148  Identities=18%  Similarity=0.234  Sum_probs=135.7

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      -++..|..|+||||+|+..|+.++++.|+++|++++. .|..|.||||+|+..|+.+++++|++.+. ..  ....+.++
T Consensus       550 d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~-~d~~G~TpL~~A~~~g~~~iv~~L~~~~~-~~--~~~~~~~~  625 (823)
T PLN03192        550 DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHI-RDANGNTALWNAISAKHHKIFRILYHFAS-IS--DPHAAGDL  625 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCC-cCCCCCCHHHHHHHhCCHHHHHHHHhcCc-cc--CcccCchH
Confidence            3688999999999999999999999999999999988 89999999999999999999999998763 22  23567799


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCC-CCHh
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEG-QTTL  166 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g-~t~l  166 (252)
                      ||.|+..|+.++++.|+++|+      +++.+|..|+||||+|+..|+.+++++|++      +|++++..|..| .||+
T Consensus       626 L~~Aa~~g~~~~v~~Ll~~Ga------din~~d~~G~TpLh~A~~~g~~~iv~~Ll~------~GAdv~~~~~~g~~t~~  693 (823)
T PLN03192        626 LCTAAKRNDLTAMKELLKQGL------NVDSEDHQGATALQVAMAEDHVDMVRLLIM------NGADVDKANTDDDFSPT  693 (823)
T ss_pred             HHHHHHhCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHCCcHHHHHHHHH------cCCCCCCCCCCCCCCHH
Confidence            999999999999999999999      899999999999999999999999999996      899999999888 8999


Q ss_pred             Hhhhh
Q 025505          167 QLCNA  171 (252)
Q Consensus       167 ~~a~~  171 (252)
                      +++..
T Consensus       694 ~l~~~  698 (823)
T PLN03192        694 ELREL  698 (823)
T ss_pred             HHHHH
Confidence            88654

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=155.30  Aligned_cols=133  Identities=21%  Similarity=0.268  Sum_probs=118.3

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhh------cCccccccccCCCCcHHHHHHHcCC----HHHHHHHHHhCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGE------INRELCLEVDNSSMIPLHRAALDGN----SDVIRALVSICPE   75 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~   75 (252)
                      +++++.+|..|.||||+|+..|+.++++.|+.      .+++++. .|..|.||||+|+..|+    .+++++|++.+ .
T Consensus        11 ~~~~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~-~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g-a   88 (169)
T PHA02741         11 EEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNA-TDDAGQMCIHIAAEKHEAQLAAEIIDHLIELG-A   88 (169)
T ss_pred             HHHhhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhc-cCCCCCcHHHHHHHcCChHHHHHHHHHHHHcC-C
Confidence            34678889999999999999999999999854      2466766 88999999999999998    58899999998 6


Q ss_pred             cccccCC-CCchHHHHHHHcCChHHHHHHHH-HHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcc
Q 025505           76 SLEKLTS-NGETALHLAVKKSRSDAFEALVD-EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (252)
Q Consensus        76 ~~~~~~~-~g~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  146 (252)
                      +++.++. .|.||||+|+..++.+++++|+. .+.      +++..+..|+||||+|+..++.+++++|++.+
T Consensus        89 din~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~------~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~  155 (169)
T PHA02741         89 DINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGI------DLHFCNADNKSPFELAIDNEDVAMMQILREIV  155 (169)
T ss_pred             CCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCC------CCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHH
Confidence            7888885 89999999999999999999997 477      78889999999999999999999999999743

>PHA02741 hypothetical protein; Provisional

Probab=99.91  E-value=1.3e-23  Score=155.32  Aligned_cols=133  Identities=20%  Similarity=0.289  Sum_probs=119.0

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhC-----CccccccCCCCchHHHHHHHcCC----hHHHHHHHHHHhcccccccc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSIC-----PESLEKLTSNGETALHLAVKKSR----SDAFEALVDEAKNHRKEHLF  116 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-----~~~~~~~~~~g~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~  116 (252)
                      .+..|.||||+|+..|+.++++.|+...     ...++.+|..|.||||+|+..++    .+++++|++.++      ++
T Consensus        17 ~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~ga------di   90 (169)
T PHA02741         17 KNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGA------DI   90 (169)
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCC------CC
Confidence            6778999999999999999999986532     25678899999999999999998    588999999988      78


Q ss_pred             cccCC-CCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          117 TWKDK-EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       117 ~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      +.++. .|+||||+|+..++.+++++|++     ..+++++..|..|+||||+|..    .++.+++++|+++++...
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~-----~~g~~~~~~n~~g~tpL~~A~~----~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCC-----QPGIDLHFCNADNKSPFELAID----NEDVAMMQILREIVATSR  159 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHh-----CCCCCCCcCCCCCCCHHHHHHH----CCCHHHHHHHHHHHHHhc
Confidence            88885 89999999999999999999996     3689999999999999999998    888999999999987753

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.91  E-value=3.2e-23  Score=164.06  Aligned_cols=157  Identities=13%  Similarity=0.043  Sum_probs=133.9

Q ss_pred             cccccCCCChH-HHHHHhCCCHHHHHHHhhcCccccccc----cCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-CC
Q 025505            9 ASIKNQRGETT-MHLLSTDGDAETVRIFGEINRELCLEV----DNSSMIPLHRAALDGNSDVIRALVSICPESLEKL-TS   82 (252)
Q Consensus         9 ~~~~d~~g~t~-L~~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~   82 (252)
                      +..+|+.|.|+ ||.|+..|+.++++.|+++|++++. .    +..|.||||+|+..++.+++++|+++| ++++.+ +.
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdiN~-~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~G-ADVN~~~~~  102 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADPEA-PFPLSENSKTNPLIYAIDCDNDDAAKLLIRYG-ADVNRYAEE  102 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCccc-cCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcCcccCC
Confidence            45678888876 5566667899999999999999987 4    468999999999999999999999999 688875 56


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCC
Q 025505           83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEG  162 (252)
Q Consensus        83 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  162 (252)
                      .|.||||+|+..++.+++++|++.|+      +++..|..|.||||+|+..++.+++..+..           ...+..+
T Consensus       103 ~g~TpLh~Aa~~~~~eivklLL~~GA------din~kd~~G~TpL~~A~~~~~~~~~~~~~~-----------~~~~~~~  165 (300)
T PHA02884        103 AKITPLYISVLHGCLKCLEILLSYGA------DINIQTNDMVTPIELALMICNNFLAFMICD-----------NEISNFY  165 (300)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHhCChhHHHHhcC-----------Ccccccc
Confidence            89999999999999999999999999      899999999999999999888888755552           2245677


Q ss_pred             CCHhHhhhhcCCCchhHHHHHHHHHhccc
Q 025505          163 QTTLQLCNANSQDSAFKEIGWIIQRAIAQ  191 (252)
Q Consensus       163 ~t~l~~a~~~~~~~~~~~~~~~L~~~ga~  191 (252)
                      .+|++++.       +.+++++|+++++-
T Consensus       166 ~~~~~~~~-------n~ei~~~Lish~vl  187 (300)
T PHA02884        166 KHPKKILI-------NFDILKILVSHFIL  187 (300)
T ss_pred             cChhhhhc-------cHHHHHHHHHHHHH
Confidence            88888743       57899999999993

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=2e-24  Score=157.29  Aligned_cols=172  Identities=19%  Similarity=0.121  Sum_probs=145.1

Q ss_pred             ccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCC
Q 025505            3 RLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTS   82 (252)
Q Consensus         3 ~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~   82 (252)
                      ..+|+-++..|++|+++++.++-.|+...++.++..++..+. .+..+++|+.+++..-+.+++..+.+.   .++..|+
T Consensus        83 ~~~~~~~~~t~p~g~~~~~v~ap~~s~~k~sttltN~~rgne-vs~~p~s~~slsVhql~L~~~~~~~~n---~VN~~De  158 (296)
T KOG0502|consen   83 QLDPDAIDETDPEGWSALLVAAPCGSVDKVSTTLTNGARGNE-VSLMPWSPLSLSVHQLHLDVVDLLVNN---KVNACDE  158 (296)
T ss_pred             ccCCCCCCCCCchhhhhhhhcCCCCCcceeeeeecccccCCc-cccccCChhhHHHHHHHHHHHHHHhhc---cccCccc
Confidence            356777888888999999999999999999999988888776 778888888888888777777666654   3578888


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCC
Q 025505           83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEG  162 (252)
Q Consensus        83 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  162 (252)
                      .|.|||.+|+.+|+..+|++|++.|+      ++........++|.+|++.|..++|++||.      ++.|+|..|.+|
T Consensus       159 ~GfTpLiWAaa~G~i~vV~fLL~~GA------dp~~lgk~resALsLAt~ggytdiV~lLL~------r~vdVNvyDwNG  226 (296)
T KOG0502|consen  159 FGFTPLIWAAAKGHIPVVQFLLNSGA------DPDALGKYRESALSLATRGGYTDIVELLLT------REVDVNVYDWNG  226 (296)
T ss_pred             cCchHhHHHHhcCchHHHHHHHHcCC------ChhhhhhhhhhhHhHHhcCChHHHHHHHHh------cCCCcceeccCC
Confidence            89999999999999999999998888      677777788888999998888899998884      888888888888


Q ss_pred             CCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          163 QTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       163 ~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      -|||-+|+.    .++.++++.|+..||+...
T Consensus       227 gTpLlyAvr----gnhvkcve~Ll~sGAd~t~  254 (296)
T KOG0502|consen  227 GTPLLYAVR----GNHVKCVESLLNSGADVTQ  254 (296)
T ss_pred             Cceeeeeec----CChHHHHHHHHhcCCCccc
Confidence            899988887    7788889999988888875

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.91  E-value=4.9e-24  Score=190.09  Aligned_cols=171  Identities=25%  Similarity=0.307  Sum_probs=140.9

Q ss_pred             cCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCC
Q 025505            4 LWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSN   83 (252)
Q Consensus         4 ~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   83 (252)
                      ..+..+++.-+.|.||||.|+..|+.+++..+++.++..+. ....+.+++|.|...+.+.+++.+++++ ..++.++..
T Consensus       462 ~~g~~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~~~~~~-~~~~~l~~lhla~~~~~v~~~~~l~~~g-a~v~~~~~r  539 (1143)
T KOG4177|consen  462 QYGADPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGGANDNL-DAKKGLTPLHLAADEDTVKVAKILLEHG-ANVDLRTGR  539 (1143)
T ss_pred             hcCCCcchhccccCcchhhhhccCCchHHHHhhhcCCccCc-cchhccchhhhhhhhhhHHHHHHHhhcC-Cceehhccc
Confidence            34555667777777777777777777777777777766554 6667777788877777777888888777 677888888


Q ss_pred             CchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC
Q 025505           84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ  163 (252)
Q Consensus        84 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  163 (252)
                      |.||||.|+..|+..+|++|+++++      +++.++..|+||||.||..|+.+++++|++      +|+++|..|.+|.
T Consensus       540 ~~TpLh~A~~~g~v~~VkfLLe~gA------dv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk------~GA~vna~d~~g~  607 (1143)
T KOG4177|consen  540 GYTPLHVAVHYGNVDLVKFLLEHGA------DVNAKDKLGYTPLHQAAQQGHNDIAELLLK------HGASVNAADLDGF  607 (1143)
T ss_pred             ccchHHHHHhcCCchHHHHhhhCCc------cccccCCCCCChhhHHHHcChHHHHHHHHH------cCCCCCcccccCc
Confidence            8899999999999999999999988      788888889999999999998899999995      8888899999999


Q ss_pred             CHhHhhhhcCCCchhHHHHHHHHHhcccc
Q 025505          164 TTLQLCNANSQDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       164 t~l~~a~~~~~~~~~~~~~~~L~~~ga~~  192 (252)
                      |||++|..    .++.+++++|+..+++.
T Consensus       608 TpL~iA~~----lg~~~~~k~l~~~~~~~  632 (1143)
T KOG4177|consen  608 TPLHIAVR----LGYLSVVKLLKVVTATP  632 (1143)
T ss_pred             chhHHHHH----hcccchhhHHHhccCcc
Confidence            99999888    88888999998888885

>PHA02795 ankyrin-like protein; Provisional

Probab=99.90  E-value=2.5e-23  Score=171.01  Aligned_cols=161  Identities=14%  Similarity=0.014  Sum_probs=139.8

Q ss_pred             HHHhCCCHHHHHHHhhcCcccc------ccccCCCCcHHHHHHH--cCCHHHHHHHHHhCCccccccCCCCchHHHHHHH
Q 025505           22 LLSTDGDAETVRIFGEINRELC------LEVDNSSMIPLHRAAL--DGNSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (252)
Q Consensus        22 ~A~~~g~~~~v~~Ll~~~~~~~------~~~~~~g~t~Lh~A~~--~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~   93 (252)
                      +|+..+..|++++|+++|++++      . .+..++|+||+++.  .|+.+++++|+++| ++++.  .++.||||.|+.
T Consensus        83 ~~~~~~~k~~~~~l~s~~~~~~~~~~~~~-~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G-ADIn~--~~~~t~lh~A~~  158 (437)
T PHA02795         83 LFAYITYKDIISALVSKNYMEDIFSIIIK-NCNSVQDLLLYYLSNAYVEIDIVDFMVDHG-AVIYK--IECLNAYFRGIC  158 (437)
T ss_pred             HHhhcchHHHHHHHHhcccccchhhhhhh-ccccccHHHHHHHHhcCCCHHHHHHHHHCC-CCCCC--CCCCCHHHHHHH
Confidence            8999999999999999999977      4 77889999999999  89999999999999 66666  355899999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcC
Q 025505           94 KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANS  173 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~  173 (252)
                      .++.+++++|+++|+........+..+..+.|++|.|+..+..+++++|++      +|++++.+|..|.||||+|+.  
T Consensus       159 ~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs------~GADIN~kD~~G~TpLh~Aa~--  230 (437)
T PHA02795        159 KKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIP------YIEDINQLDAGGRTLLYRAIY--  230 (437)
T ss_pred             cCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHHHh------CcCCcCcCCCCCCCHHHHHHH--
Confidence            999999999999997321111122223457899999999999999999996      899999999999999999998  


Q ss_pred             CCchhHHHHHHHHHhccccCCCC
Q 025505          174 QDSAFKEIGWIIQRAIAQQSPQL  196 (252)
Q Consensus       174 ~~~~~~~~~~~L~~~ga~~~~~~  196 (252)
                        .++.+++++|+++|++++...
T Consensus       231 --~g~~eiVelLL~~GAdIN~~d  251 (437)
T PHA02795        231 --AGYIDLVSWLLENGANVNAVM  251 (437)
T ss_pred             --cCCHHHHHHHHHCCCCCCCcC
Confidence              889999999999999998643

>PHA02730 ankyrin-like protein; Provisional

Probab=99.90  E-value=3.8e-23  Score=177.66  Aligned_cols=177  Identities=14%  Similarity=0.121  Sum_probs=139.4

Q ss_pred             cccccccCCCChHHHHHHhCC---CHHHHHHHhhcCccccccccCCCCcHHHHHHHcC--CHHHHHHHHHhCC-cccccc
Q 025505            7 QLASIKNQRGETTMHLLSTDG---DAETVRIFGEINRELCLEVDNSSMIPLHRAALDG--NSDVIRALVSICP-ESLEKL   80 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~~Ll~~~~-~~~~~~   80 (252)
                      ++.+..|..|+||||+|+..|   +.++|++|+++|++++. +|..|+||||+|+..+  +.+++++|++.+. ++++..
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~GAdin~-kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~~  110 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRGVERLC-RNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNELT  110 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCCCCCcc-cCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCcccc
Confidence            444588899999999999987   59999999999999997 9999999999999976  7999999999972 345667


Q ss_pred             CCCCchHHHHHHH--cCChHHHHHHHHHHhcccccccccccC-----CCCCcHHHHHHhCChHHHHHHHHhcccccceee
Q 025505           81 TSNGETALHLAVK--KSRSDAFEALVDEAKNHRKEHLFTWKD-----KEGNTVLHLATLNKLKQIVELLIRENSNRRIMI  153 (252)
Q Consensus        81 ~~~g~t~L~~a~~--~~~~~~~~~Ll~~~~~~~~~~~~~~~~-----~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~  153 (252)
                      +..+.+|||.++.  +++.+++++|+..+..     +++...     ..|-+|++++...++.++|++|++      .|+
T Consensus       111 ~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~-----~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~------~g~  179 (672)
T PHA02730        111 SNINDFDLYSYMSSDNIDLRLLKYLIVDKRI-----RPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLK------SEC  179 (672)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHhcCC-----ChhhhhhhhccccchhhhhHhcCCCchHHHHHHHH------cCC
Confidence            7779999999888  8899999999974321     333332     378899999999999999999997      555


Q ss_pred             eee-------cccCC-CCCHhHhhhhc--CCCchhHHHHHHHHHhccccCCC
Q 025505          154 RIN-------TVNKE-GQTTLQLCNAN--SQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       154 ~~~-------~~~~~-g~t~l~~a~~~--~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      +++       ..+.. ..|.||++...  ....+..|++++|+++||+++..
T Consensus       180 ~v~g~~~~~~~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~k  231 (672)
T PHA02730        180 YSTGYVFRSCMYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGR  231 (672)
T ss_pred             cccccccccccccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCC
Confidence            552       23333 44556643221  01266889999999999998763

>PHA02917 ankyrin-like protein; Provisional

Probab=99.90  E-value=5e-23  Score=180.28  Aligned_cols=156  Identities=15%  Similarity=0.087  Sum_probs=124.0

Q ss_pred             HHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHH--HcCCHHHHHHHHHhCCccccccCC---CC-----------c
Q 025505           22 LLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAA--LDGNSDVIRALVSICPESLEKLTS---NG-----------E   85 (252)
Q Consensus        22 ~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~--~~g~~~~v~~Ll~~~~~~~~~~~~---~g-----------~   85 (252)
                      +|+..|+.++|++|+++|++++. +|..|.||||+|+  ..|+.+++++|+++| ++++..|.   .|           .
T Consensus       109 ~a~~~~~~e~vk~Ll~~Gadin~-~d~~g~T~L~~~~a~~~~~~eivklLi~~G-a~vn~~d~~~~~g~~~~~~~~~~~~  186 (661)
T PHA02917        109 MKSKNVDVDLIKVLVEHGFDLSV-KCENHRSVIENYVMTDDPVPEIIDLFIENG-CSVLYEDEDDEYGYAYDDYQPRNCG  186 (661)
T ss_pred             HHhhcCCHHHHHHHHHcCCCCCc-cCCCCccHHHHHHHccCCCHHHHHHHHHcC-CCccccccccccccccccccccccc
Confidence            33344467888889999999987 8999999999654  568999999999999 66654442   33           5


Q ss_pred             hHHHHHHH-----------cCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChH--HHHHHHHhccccccee
Q 025505           86 TALHLAVK-----------KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLK--QIVELLIRENSNRRIM  152 (252)
Q Consensus        86 t~L~~a~~-----------~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~--~~v~~Ll~~~~~~~~~  152 (252)
                      ||||+|+.           .++.+++++|++.|+      +++..|..|.||||+|+..|+.  ++|++|+       .|
T Consensus       187 t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Ga------dvn~~d~~G~TpLh~A~~~g~~~~eivk~Li-------~g  253 (661)
T PHA02917        187 TVLHLYIISHLYSESDTRAYVRPEVVKCLINHGI------KPSSIDKNYCTALQYYIKSSHIDIDIVKLLM-------KG  253 (661)
T ss_pred             cHHHHHHhhcccccccccccCcHHHHHHHHHCCC------CcccCCCCCCcHHHHHHHcCCCcHHHHHHHH-------hC
Confidence            99999986           468999999999999      8999999999999999999985  7999998       35


Q ss_pred             eeee----cccCCCCCHhHhhhhcCC-----CchhHHHHHHHHHhcccc
Q 025505          153 IRIN----TVNKEGQTTLQLCNANSQ-----DSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       153 ~~~~----~~~~~g~t~l~~a~~~~~-----~~~~~~~~~~L~~~ga~~  192 (252)
                      ++++    ..|..|.+|+++|+..++     ...+.+++++|++.|++.
T Consensus       254 ~d~~~~~~~~~~~~~~~~~~a~yl~~~~~~~~~v~~~iv~~Li~~Ga~~  302 (661)
T PHA02917        254 IDNTAYSYIDDLTCCTRGIMADYLNSDYRYNKDVDLDLVKLFLENGKPH  302 (661)
T ss_pred             CcccccccccCcccccchHHHHHHHhhccccccchHHHHHHHHhCCCCC
Confidence            5543    456678888888873110     022779999999999863

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.90  E-value=2.7e-23  Score=151.41  Aligned_cols=167  Identities=19%  Similarity=0.143  Sum_probs=147.4

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      ....+..+-.+.+|+.+++...+.+.+..+.+...  +. .|++|+|||.||+.+|++.+|++|++.| +++....+...
T Consensus       119 ~~rgnevs~~p~s~~slsVhql~L~~~~~~~~n~V--N~-~De~GfTpLiWAaa~G~i~vV~fLL~~G-Adp~~lgk~re  194 (296)
T KOG0502|consen  119 GARGNEVSLMPWSPLSLSVHQLHLDVVDLLVNNKV--NA-CDEFGFTPLIWAAAKGHIPVVQFLLNSG-ADPDALGKYRE  194 (296)
T ss_pred             cccCCccccccCChhhHHHHHHHHHHHHHHhhccc--cC-ccccCchHhHHHHhcCchHHHHHHHHcC-CChhhhhhhhh
Confidence            33456777889999999999988888777655433  33 8999999999999999999999999999 78899999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCH
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT  165 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  165 (252)
                      ++|.+|++.|..++|++|+.++.      ++|..|.+|-|||-+|++-++.++++.|+.      .|++++..+..|.++
T Consensus       195 sALsLAt~ggytdiV~lLL~r~v------dVNvyDwNGgTpLlyAvrgnhvkcve~Ll~------sGAd~t~e~dsGy~~  262 (296)
T KOG0502|consen  195 SALSLATRGGYTDIVELLLTREV------DVNVYDWNGGTPLLYAVRGNHVKCVESLLN------SGADVTQEDDSGYWI  262 (296)
T ss_pred             hhHhHHhcCChHHHHHHHHhcCC------CcceeccCCCceeeeeecCChHHHHHHHHh------cCCCcccccccCCcH
Confidence            99999999999999999999999      899999999999999999999999999995      999999999999999


Q ss_pred             hHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          166 LQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       166 l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      +..|..    .++. +++..++.-+.+.
T Consensus       263 mdlAVa----lGyr-~Vqqvie~h~lkl  285 (296)
T KOG0502|consen  263 MDLAVA----LGYR-IVQQVIEKHALKL  285 (296)
T ss_pred             HHHHHH----hhhH-HHHHHHHHHHHHH
Confidence            999997    5554 7777777666554

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.90  E-value=2.2e-23  Score=186.00  Aligned_cols=180  Identities=19%  Similarity=0.252  Sum_probs=137.1

Q ss_pred             cccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcC-CHHHHHHHHHhCCccccccCCCCc
Q 025505            7 QLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDG-NSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g-~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      ...+..++.|.||||.|+.+++..+|+.+++++++.+. .+..|+||+|+|+..| ..++...+++.+ .+++.....|.
T Consensus       398 a~~~~~gk~gvTplh~aa~~~~~~~v~l~l~~gA~~~~-~~~lG~T~lhvaa~~g~~~~~~~~l~~~g-~~~n~~s~~G~  475 (1143)
T KOG4177|consen  398 ADPNSAGKNGVTPLHVAAHYGNPRVVKLLLKRGASPNA-KAKLGYTPLHVAAKKGRYLQIARLLLQYG-ADPNAVSKQGF  475 (1143)
T ss_pred             CCcccCCCCCcceeeehhhccCcceEEEEeccCCChhh-HhhcCCChhhhhhhcccHhhhhhhHhhcC-CCcchhccccC
Confidence            33566666777777777777777777777777776666 6666777777777776 556666666666 56666677777


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhccc---------------------------ccccccccCCCCCcHHHHHHhCChHHH
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHR---------------------------KEHLFTWKDKEGNTVLHLATLNKLKQI  138 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~---------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (252)
                      ||||+|+..|+.+++..+++.++..+                           .....+.++..|.||||.||..|+..+
T Consensus       476 T~Lhlaaq~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~  555 (1143)
T KOG4177|consen  476 TPLHLAAQEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDL  555 (1143)
T ss_pred             cchhhhhccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchH
Confidence            77777777777777666666552221                           112677788899999999999999999


Q ss_pred             HHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCCCCC
Q 025505          139 VELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPA  198 (252)
Q Consensus       139 v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~~  198 (252)
                      |++|++      +|++++++++.|+||||.|+.    .++.+|+++|+++|++++....+
T Consensus       556 VkfLLe------~gAdv~ak~~~G~TPLH~Aa~----~G~~~i~~LLlk~GA~vna~d~~  605 (1143)
T KOG4177|consen  556 VKFLLE------HGADVNAKDKLGYTPLHQAAQ----QGHNDIAELLLKHGASVNAADLD  605 (1143)
T ss_pred             HHHhhh------CCccccccCCCCCChhhHHHH----cChHHHHHHHHHcCCCCCccccc
Confidence            999996      999999999999999999999    88999999999999999875443

>PHA02730 ankyrin-like protein; Provisional

Probab=99.89  E-value=2.8e-22  Score=172.37  Aligned_cols=176  Identities=13%  Similarity=0.164  Sum_probs=142.7

Q ss_pred             ccccccccCCCChHHHH--HHhCCCHHHHHHHhh--------------------------------cCccccc-------
Q 025505            6 PQLASIKNQRGETTMHL--LSTDGDAETVRIFGE--------------------------------INRELCL-------   44 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~--A~~~g~~~~v~~Ll~--------------------------------~~~~~~~-------   44 (252)
                      +.-++.+|..|+||||+  ++..|+.|+|++|++                                .|.+...       
T Consensus       225 GadIN~kd~~G~TpLh~~~~~~~~~~eiv~~Li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~  304 (672)
T PHA02730        225 NVSIHGRDEGGSLPIQYYWSCSTIDIEIVKLLIKDVDTCSVYDDISQPYIRGVLADYLNKRFRVTPYNVDMEIVNLLIEG  304 (672)
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCcccHHHHHHHHhccccccccccccchhhhhhHHHhhhhhhhcccCCcchHHHHHHhhc
Confidence            44578999999999995  666788999999999                                5666532       


Q ss_pred             ------------cccCCCCc---------------------HHHHHHHcC---CHHHHHHHHHhCCccccccCCCCchHH
Q 025505           45 ------------EVDNSSMI---------------------PLHRAALDG---NSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus        45 ------------~~~~~g~t---------------------~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                                  ..+..|.+                     .||.-...+   +.+++++|+++| ++++.. ..|.|||
T Consensus       305 ~~~~~~~~~~~~~~~~~~~n~~~~~~i~~~~~~~~~~~~q~~l~~Y~~~~~~v~ieIvelLIs~G-AdIN~k-~~G~TpL  382 (672)
T PHA02730        305 RHTLIDVMRSITSYDSREYNHYIIDNILKRFRQQDESIVQAMLINYLHYGDMVSIPILRCMLDNG-ATMDKT-TDNNYPL  382 (672)
T ss_pred             cCcchhhhhccccccccccchhHHHHHHHhhhccchhHHHHHHHHHHhcCCcCcHHHHHHHHHCC-CCCCcC-CCCCcHH
Confidence                        14555654                     677766655   589999999999 677775 7899999


Q ss_pred             HHHHHcCC----hHHHHHHHHHHhcccccccccccCCCCCcHHHH---HHhCC---------hHHHHHHHHhccccccee
Q 025505           89 HLAVKKSR----SDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHL---ATLNK---------LKQIVELLIRENSNRRIM  152 (252)
Q Consensus        89 ~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~---A~~~~---------~~~~v~~Ll~~~~~~~~~  152 (252)
                      |+|+..+.    .+++++|+++|+..    +++..|..|.||||.   |...+         ..+++++|++      .|
T Consensus       383 H~Aa~~nnn~i~~eIvelLIs~Ga~~----dIN~kd~~G~T~Lh~~i~a~~~n~~~~~~e~~~~~ivk~LIs------~G  452 (672)
T PHA02730        383 HDYFVNNNNIVDVNVVRFIVENNGHM----AINHVSNNGRLCMYGLILSRFNNCGYHCYETILIDVFDILSK------YM  452 (672)
T ss_pred             HHHHHHcCCcchHHHHHHHHHcCCCc----cccccccCCCchHhHHHHHHhccccccccchhHHHHHHHHHh------cc
Confidence            99998875    89999999998621    478889999999994   33332         2357999996      99


Q ss_pred             eeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCCCC
Q 025505          153 IRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLP  197 (252)
Q Consensus       153 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~  197 (252)
                      ++++.+|..|+||||+|+.    .++.+++++|+++|++++....
T Consensus       453 ADINakD~~G~TPLh~Aa~----~~~~eive~LI~~GAdIN~~d~  493 (672)
T PHA02730        453 DDIDMIDNENKTLLYYAVD----VNNIQFARRLLEYGASVNTTSR  493 (672)
T ss_pred             cchhccCCCCCCHHHHHHH----hCCHHHHHHHHHCCCCCCCCCC
Confidence            9999999999999999998    8889999999999999986443

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.88  E-value=2.9e-22  Score=140.89  Aligned_cols=140  Identities=24%  Similarity=0.236  Sum_probs=130.3

Q ss_pred             HHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHH
Q 025505           20 MHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA   99 (252)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~   99 (252)
                      +.+|+..+....|+.|++..++....+|.+|.||||.|+..|+.++++.|+..+ ++.+.+...|+||||.|+.-++.++
T Consensus        67 ~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~g-An~~a~T~~GWTPLhSAckWnN~~v  145 (228)
T KOG0512|consen   67 LLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSG-ANKEAKTNEGWTPLHSACKWNNFEV  145 (228)
T ss_pred             HHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHcc-CCcccccccCccchhhhhcccchhH
Confidence            789999999999999999998877779999999999999999999999999999 7899999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccccCCCCCcHHHHHHhCChH-HHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505          100 FEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLK-QIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus       100 ~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~-~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      +.+|+++|+      ++|.......||||+||...+. ..+++|+.     ..+++...++..+.||+++|-.
T Consensus       146 a~~LLqhga------DVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~-----dryi~pg~~nn~eeta~~iARR  207 (228)
T KOG0512|consen  146 AGRLLQHGA------DVNAQTKGLLTPLHLAAGNRNSRDTLELLLH-----DRYIHPGLKNNLEETAFDIARR  207 (228)
T ss_pred             HHHHHhccC------cccccccccchhhHHhhcccchHHHHHHHhh-----ccccChhhhcCccchHHHHHHH
Confidence            999999999      8999999999999999987654 67888887     7889999999999999999864

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=9e-23  Score=148.78  Aligned_cols=129  Identities=18%  Similarity=0.205  Sum_probs=107.6

Q ss_pred             cccccccCCCChHHHHHHhCCCHHHHHHHhhcCc--c----ccccccCCCCcHHHHHHHcCCH---HHHHHHHHhCCccc
Q 025505            7 QLASIKNQRGETTMHLLSTDGDAETVRIFGEINR--E----LCLEVDNSSMIPLHRAALDGNS---DVIRALVSICPESL   77 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--~----~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~   77 (252)
                      .+...+|..|.||||+||..|+..  ..+...+.  +    .....|..|.||||+|+..|+.   +++++|++.+ .++
T Consensus         8 ~~~~~~d~~g~tpLh~A~~~g~~~--~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g-adi   84 (154)
T PHA02736          8 IFASEPDIEGENILHYLCRNGGVT--DLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG-ADI   84 (154)
T ss_pred             hHHHhcCCCCCCHHHHHHHhCCHH--HHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcC-CCc
Confidence            346788999999999999999843  33322221  1    1123688999999999999987   4688999999 678


Q ss_pred             cccC-CCCchHHHHHHHcCChHHHHHHHHH-HhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           78 EKLT-SNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        78 ~~~~-~~g~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      +.++ ..|.||||+|+..++.+++++|+.. +.      +++.++..|.||||+|+..++.+++++|++
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~------d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~  147 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCNQPGV------NMEILNYAFKTPYYVACERHDAKMMNILRA  147 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCC------CCccccCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            8887 5999999999999999999999974 67      788999999999999999999999999996

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.88  E-value=1.1e-22  Score=148.31  Aligned_cols=131  Identities=16%  Similarity=0.135  Sum_probs=110.7

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhC------CccccccCCCCchHHHHHHHcCCh---HHHHHHHHHHhcccccccc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSIC------PESLEKLTSNGETALHLAVKKSRS---DAFEALVDEAKNHRKEHLF  116 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~------~~~~~~~~~~g~t~L~~a~~~~~~---~~~~~Ll~~~~~~~~~~~~  116 (252)
                      .|..|.||||+|+..|+.  +.++....      +.....+|..|.||||+|+..++.   +++++|++.++      ++
T Consensus        13 ~d~~g~tpLh~A~~~g~~--~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~ga------di   84 (154)
T PHA02736         13 PDIEGENILHYLCRNGGV--TDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGA------DI   84 (154)
T ss_pred             cCCCCCCHHHHHHHhCCH--HHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCC------Cc
Confidence            677899999999999984  33332221      112445688999999999999986   46889999998      78


Q ss_pred             cccC-CCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          117 TWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       117 ~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      +.++ ..|+||||+|+..++.+++++|++     +.+++++.+|..|.||||+|+.    .++.+++++|+++|++..
T Consensus        85 n~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~-----~~g~d~n~~~~~g~tpL~~A~~----~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         85 NGKERVFGNTPLHIAVYTQNYELATWLCN-----QPGVNMEILNYAFKTPYYVACE----RHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             cccCCCCCCcHHHHHHHhCCHHHHHHHHh-----CCCCCCccccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            8888 489999999999999999999996     4689999999999999999998    888999999999998764

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.88  E-value=1e-22  Score=154.37  Aligned_cols=152  Identities=26%  Similarity=0.322  Sum_probs=127.3

Q ss_pred             HhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHH
Q 025505           24 STDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEA  102 (252)
Q Consensus        24 ~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~  102 (252)
                      |+.|+.--|+..++. ..+.+. -|..|++||||||+.|+..+++.|+..| +.++..+....||||+|+.+||.++|+.
T Consensus         8 cregna~qvrlwld~tehdln~-gddhgfsplhwaakegh~aivemll~rg-arvn~tnmgddtplhlaaahghrdivqk   85 (448)
T KOG0195|consen    8 CREGNAFQVRLWLDDTEHDLNV-GDDHGFSPLHWAAKEGHVAIVEMLLSRG-ARVNSTNMGDDTPLHLAAAHGHRDIVQK   85 (448)
T ss_pred             hhcCCeEEEEEEecCccccccc-ccccCcchhhhhhhcccHHHHHHHHhcc-cccccccCCCCcchhhhhhcccHHHHHH
Confidence            445554444444443 344555 8899999999999999999999999999 7899999999999999999999999999


Q ss_pred             HHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHH
Q 025505          103 LVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIG  182 (252)
Q Consensus       103 Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~  182 (252)
                      |+++.+      ++|..+..|+|||||||..|...+++-|++      .|+.++..|++|.|||+.|..    .-...+.
T Consensus        86 ll~~ka------dvnavnehgntplhyacfwgydqiaedli~------~ga~v~icnk~g~tpldkakp----~l~~~l~  149 (448)
T KOG0195|consen   86 LLSRKA------DVNAVNEHGNTPLHYACFWGYDQIAEDLIS------CGAAVNICNKKGMTPLDKAKP----MLKNTLL  149 (448)
T ss_pred             HHHHhc------ccchhhccCCCchhhhhhhcHHHHHHHHHh------ccceeeecccCCCCchhhhch----HHHHHHH
Confidence            999999      899999999999999999999999999996      999999999999999999864    3333344


Q ss_pred             HHHHHhccccC
Q 025505          183 WIIQRAIAQQS  193 (252)
Q Consensus       183 ~~L~~~ga~~~  193 (252)
                      ++-.+.|-+++
T Consensus       150 e~aek~gq~~n  160 (448)
T KOG0195|consen  150 EIAEKHGQSPN  160 (448)
T ss_pred             HHHHHhCCCCC
Confidence            44445666555

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.87  E-value=6.3e-22  Score=161.27  Aligned_cols=171  Identities=21%  Similarity=0.282  Sum_probs=130.4

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      .+..+.+|.|+||-+|...+.+||++|+++|++++. .|..++||||.|+..|+..++++|++++ ++....+.+|..|+
T Consensus        66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~Vn~-~d~e~wtPlhaaascg~~~i~~~li~~g-A~~~avNsdg~~P~  143 (527)
T KOG0505|consen   66 PNLCNVDGLTALHQACIDDNLEMVKFLVENGANVNA-QDNEGWTPLHAAASCGYLNIVEYLIQHG-ANLLAVNSDGNMPY  143 (527)
T ss_pred             ccccCCccchhHHHHHhcccHHHHHHHHHhcCCccc-cccccCCcchhhcccccHHHHHHHHHhh-hhhhhccCCCCCcc
Confidence            366777788888888888888888888888888877 7788888888888888888888888877 55555666666555


Q ss_pred             HHHHHcCChHHH--------------------------HHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHH
Q 025505           89 HLAVKKSRSDAF--------------------------EALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL  142 (252)
Q Consensus        89 ~~a~~~~~~~~~--------------------------~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  142 (252)
                      ..+.......+.                          ...+..|.      ..+..+..|.|+||.|+.+|..++.++|
T Consensus       144 dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~------~~d~~~~rG~T~lHvAaa~Gy~e~~~lL  217 (527)
T KOG0505|consen  144 DLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGA------ELDARHARGATALHVAAANGYTEVAALL  217 (527)
T ss_pred             ccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccc------cccccccccchHHHHHHhhhHHHHHHHH
Confidence            543222111111                          11122222      5556666799999999999999999999


Q ss_pred             HhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCCCC
Q 025505          143 IRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLP  197 (252)
Q Consensus       143 l~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~  197 (252)
                      ++      .|.+++.+|.+|+||||.|+.    .+..+++++|+++|++.+....
T Consensus       218 l~------ag~~~~~~D~dgWtPlHAAA~----Wg~~~~~elL~~~ga~~d~~t~  262 (527)
T KOG0505|consen  218 LQ------AGYSVNIKDYDGWTPLHAAAH----WGQEDACELLVEHGADMDAKTK  262 (527)
T ss_pred             HH------hccCcccccccCCCcccHHHH----hhhHhHHHHHHHhhcccchhhh
Confidence            95      999999999999999999988    9999999999999999987543

>PHA02792 ankyrin-like protein; Provisional

Probab=99.87  E-value=2e-21  Score=165.52  Aligned_cols=172  Identities=14%  Similarity=0.110  Sum_probs=121.2

Q ss_pred             ccccccCCCChHHHHHHhCC-------CHHHHHHHhhcCccccccccCCCCcHHHHHHHcC--CHHHHH-----------
Q 025505            8 LASIKNQRGETTMHLLSTDG-------DAETVRIFGEINRELCLEVDNSSMIPLHRAALDG--NSDVIR-----------   67 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g--~~~~v~-----------   67 (252)
                      .++..|+.|.||||+|+..+       +.++++.|+++|++++. .|..|.||||+|+...  +.++++           
T Consensus       167 ~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~-~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~  245 (631)
T PHA02792        167 TTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRY-YTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNE  245 (631)
T ss_pred             ccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCc-cCCCCChHHHHHHHcccchHHHHHHHHhccccccc
Confidence            35677788888888888888       78888888888888877 7778888888887744  333333           


Q ss_pred             --------------------------------------------------------------------------------
Q 025505           68 --------------------------------------------------------------------------------   67 (252)
Q Consensus        68 --------------------------------------------------------------------------------   67 (252)
                                                                                                      
T Consensus       246 ~~~~l~~y~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK  325 (631)
T PHA02792        246 LMNILSNYLRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIK  325 (631)
T ss_pred             hHhHHHHHHHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHH
Confidence                                                                                            


Q ss_pred             -------------------------------HHHHhCCccccccCCCC--chHHHHHHHcCCh---HHHHHHHHHHhccc
Q 025505           68 -------------------------------ALVSICPESLEKLTSNG--ETALHLAVKKSRS---DAFEALVDEAKNHR  111 (252)
Q Consensus        68 -------------------------------~Ll~~~~~~~~~~~~~g--~t~L~~a~~~~~~---~~~~~Ll~~~~~~~  111 (252)
                                                     +|+++| ++++.+|..|  .||||+|+.....   +++++|+++++   
T Consensus       326 ~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~G-ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GA---  401 (631)
T PHA02792        326 CMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNG-NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYID---  401 (631)
T ss_pred             HHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcC-CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCC---
Confidence                                           333333 2333333332  3444444333322   13444444444   


Q ss_pred             ccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCC------CchhHHHHHHH
Q 025505          112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ------DSAFKEIGWII  185 (252)
Q Consensus       112 ~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~~~~~L  185 (252)
                         +++.+|..|+||||+|+..++.+++++|++      +|++++.+|..|+|||++|.....      .....+++++|
T Consensus       402 ---DIN~kD~~G~TPLh~Aa~~~n~eivelLLs------~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lL  472 (631)
T PHA02792        402 ---DINKIDKHGRSILYYCIESHSVSLVEWLID------NGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEII  472 (631)
T ss_pred             ---ccccccccCcchHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence               778889999999999999999999999996      899999999999999999863110      02235789999


Q ss_pred             HHhccccC
Q 025505          186 QRAIAQQS  193 (252)
Q Consensus       186 ~~~ga~~~  193 (252)
                      +++|+++.
T Consensus       473 Ls~~p~i~  480 (631)
T PHA02792        473 LSKLPTIE  480 (631)
T ss_pred             HhcCCChh
Confidence            99997764

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.87  E-value=2.2e-22  Score=169.64  Aligned_cols=183  Identities=19%  Similarity=0.211  Sum_probs=160.0

Q ss_pred             CccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCC
Q 025505            5 WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNG   84 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   84 (252)
                      +++-++..|.+|.|+||.||..|+.++++.|++..+-+.. ++..|.+|||+|++.|+.+++++++.+. +..+..+..|
T Consensus        38 rsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~ldl-~d~kg~~plhlaaw~g~~e~vkmll~q~-d~~na~~~e~  115 (854)
T KOG0507|consen   38 RSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEALLDL-CDTKGILPLHLAAWNGNLEIVKMLLLQT-DILNAVNIEN  115 (854)
T ss_pred             CCccccccCccchhHHHHHHhcCchHHHHHHhcchhhhhh-hhccCcceEEehhhcCcchHHHHHHhcc-cCCCcccccC
Confidence            4666889999999999999999999999999999998888 8899999999999999999999999999 7889999999


Q ss_pred             chHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccce--eeeeecccCCC
Q 025505           85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI--MIRINTVNKEG  162 (252)
Q Consensus        85 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~--~~~~~~~~~~g  162 (252)
                      .||||.|+.++|.+++.+|+.+++      +...++..+.|+|.+|++.|..++|+.|++..-....  ...-..++-.+
T Consensus       116 ~tplhlaaqhgh~dvv~~Ll~~~a------dp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~  189 (854)
T KOG0507|consen  116 ETPLHLAAQHGHLEVVFYLLKKNA------DPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPA  189 (854)
T ss_pred             cCccchhhhhcchHHHHHHHhcCC------CccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCC
Confidence            999999999999999999999999      7888999999999999999999999999974110000  00012345578


Q ss_pred             CCHhHhhhhcCCCchhHHHHHHHHHhccccCCCCCCC
Q 025505          163 QTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPAD  199 (252)
Q Consensus       163 ~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~~~  199 (252)
                      .+|+|+|+.    +++.++++.|++.|.+++....+.
T Consensus       190 ~~plHlaak----ngh~~~~~~ll~ag~din~~t~~g  222 (854)
T KOG0507|consen  190 IYPLHLAAK----NGHVECMQALLEAGFDINYTTEDG  222 (854)
T ss_pred             cCCcchhhh----cchHHHHHHHHhcCCCcccccccc
Confidence            899999999    999999999999999999865443

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.86  E-value=1.4e-21  Score=159.29  Aligned_cols=152  Identities=22%  Similarity=0.274  Sum_probs=124.6

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHH--------------------
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV--------------------   65 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~--------------------   65 (252)
                      ...++..|.+|+||||.|+..|+..++++|+..|+++.. .+..|..|+..+..--..++                    
T Consensus        96 ga~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~a-vNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e  174 (527)
T KOG0505|consen   96 GANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLA-VNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEE  174 (527)
T ss_pred             cCCccccccccCCcchhhcccccHHHHHHHHHhhhhhhh-ccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhH
Confidence            445889999999999999999999999999999998766 66666555544322211111                    


Q ss_pred             ------HHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHH
Q 025505           66 ------IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIV  139 (252)
Q Consensus        66 ------v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v  139 (252)
                            ++..+..+ ......+..|.|.||+|+..|..++.++|+..+.      .++.+|.+||||||.|+..|..+++
T Consensus       175 ~~ml~D~~q~l~~G-~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~------~~~~~D~dgWtPlHAAA~Wg~~~~~  247 (527)
T KOG0505|consen  175 QTMLDDARQWLNAG-AELDARHARGATALHVAAANGYTEVAALLLQAGY------SVNIKDYDGWTPLHAAAHWGQEDAC  247 (527)
T ss_pred             HHHHHHHHHHHhcc-ccccccccccchHHHHHHhhhHHHHHHHHHHhcc------CcccccccCCCcccHHHHhhhHhHH
Confidence                  12223344 4455566669999999999999999999999999      8999999999999999999999999


Q ss_pred             HHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505          140 ELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus       140 ~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      ++|++      +|++.+.....|.||+.+|..
T Consensus       248 elL~~------~ga~~d~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  248 ELLVE------HGADMDAKTKMGETPLDVADE  273 (527)
T ss_pred             HHHHH------hhcccchhhhcCCCCccchhh
Confidence            99995      999999999999999999874

>PHA02792 ankyrin-like protein; Provisional

Probab=99.86  E-value=6.7e-21  Score=162.35  Aligned_cols=179  Identities=17%  Similarity=0.118  Sum_probs=139.7

Q ss_pred             ccccccccCCCChHHHHHHh-CCCHHHHHHHhhcCccccc-----------------------------------cccCC
Q 025505            6 PQLASIKNQRGETTMHLLST-DGDAETVRIFGEINRELCL-----------------------------------EVDNS   49 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~-----------------------------------~~~~~   49 (252)
                      +.-++..++.|.||||+|+. .++.|++++|++.|++.+.                                   ..|..
T Consensus        95 GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  174 (631)
T PHA02792         95 GLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITRAEYYNWDDELDDYDYDYTTDYDDRM  174 (631)
T ss_pred             CCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhcccccccchhhhccccccccccccCCCC
Confidence            34467888889999999976 6999999999999987321                                   14557


Q ss_pred             CCcHHHHHHHcC-------CHHHHHHHHHhCCccccccCCCCchHHHHHHHcC--ChHHHHHHHHHHhccc---------
Q 025505           50 SMIPLHRAALDG-------NSDVIRALVSICPESLEKLTSNGETALHLAVKKS--RSDAFEALVDEAKNHR---------  111 (252)
Q Consensus        50 g~t~Lh~A~~~g-------~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~---------  111 (252)
                      |.||||+|+..+       +.++++.|++++ +.++..|..|.||||+|+.+.  ..+++++|+...-...         
T Consensus       175 g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g-~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~~~~~~~~~~~l~~y  253 (631)
T PHA02792        175 GKTVLYYYIITRSQDGYATSLDVINYLISHE-KEMRYYTYREHTTLYYYVDKCDIKREIFDALFDSNYSGNELMNILSNY  253 (631)
T ss_pred             CCchHHHHHhhCCcccccCCHHHHHHHHhCC-CCcCccCCCCChHHHHHHHcccchHHHHHHHHhccccccchHhHHHHH
Confidence            999999999999       899999999999 788889999999999999999  7889998877422110         


Q ss_pred             --------------------------------------------------------------------------------
Q 025505          112 --------------------------------------------------------------------------------  111 (252)
Q Consensus       112 --------------------------------------------------------------------------------  111 (252)
                                                                                                      
T Consensus       254 ~~~~~~~~~~~id~~iv~~ll~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~l~~Yl~~~~v~ieiIK~LId~Ga~  333 (631)
T PHA02792        254 LRKQYRNKNHKIDNYIVDKLLSGHDTFYILELCNSLRNNIIISSILKRYTDSIQDLLSEYVSYHTVYINVIKCMIDEGAT  333 (631)
T ss_pred             HHHHhccCccCccHHHHHHHHhCCCccchhhhhhhhhhhhHHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHCCCc
Confidence                                                                                            


Q ss_pred             ---------------------------ccccccccCCCC--CcHHHHHHhCChH---HHHHHHHhcccccceeeeeeccc
Q 025505          112 ---------------------------KEHLFTWKDKEG--NTVLHLATLNKLK---QIVELLIRENSNRRIMIRINTVN  159 (252)
Q Consensus       112 ---------------------------~~~~~~~~~~~g--~t~Lh~A~~~~~~---~~v~~Ll~~~~~~~~~~~~~~~~  159 (252)
                                                 ...+++..|..|  .||||+|+.....   +++++|++      .|++++.+|
T Consensus       334 ~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs------~GADIN~kD  407 (631)
T PHA02792        334 LYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKP------YIDDINKID  407 (631)
T ss_pred             cccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHh------cCCcccccc
Confidence                                       112444455443  4667766554433   34566664      778899999


Q ss_pred             CCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          160 KEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       160 ~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      ..|+||||+|+.    .++.+++++|+++|++++..
T Consensus       408 ~~G~TPLh~Aa~----~~n~eivelLLs~GADIN~k  439 (631)
T PHA02792        408 KHGRSILYYCIE----SHSVSLVEWLIDNGADINIT  439 (631)
T ss_pred             ccCcchHHHHHH----cCCHHHHHHHHHCCCCCCCc
Confidence            999999999998    88899999999999998753

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.84  E-value=1.7e-20  Score=168.56  Aligned_cols=168  Identities=17%  Similarity=0.142  Sum_probs=128.1

Q ss_pred             cccccccCCCChHHH-HHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHH----HHHHHHhCCcc-----
Q 025505            7 QLASIKNQRGETTMH-LLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV----IRALVSICPES-----   76 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~-~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~----v~~Ll~~~~~~-----   76 (252)
                      ..++..|..|+|||| .|+..++.++++.|++.+.     .+..|.||||.|+. +..+.    +..+....+..     
T Consensus        43 ~~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~-----~~~~G~T~Lh~A~~-~~~~~v~~ll~~l~~~~~~~~~~~~  116 (743)
T TIGR00870        43 LNINCPDRLGRSALFVAAIENENLELTELLLNLSC-----RGAVGDTLLHAISL-EYVDAVEAILLHLLAAFRKSGPLEL  116 (743)
T ss_pred             cCCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC-----CCCcChHHHHHHHh-ccHHHHHHHHHHHhhcccccCchhh
Confidence            346778899999999 8888889999999999887     56679999999987 23333    33333333110     


Q ss_pred             c----cccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccC--------------CCCCcHHHHHHhCChHHH
Q 025505           77 L----EKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD--------------KEGNTVLHLATLNKLKQI  138 (252)
Q Consensus        77 ~----~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~~  138 (252)
                      .    ......|.||||+|+..++.+++++|+++|+      +++..+              ..|.||||.|+..++.++
T Consensus       117 ~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GA------dv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~i  190 (743)
T TIGR00870       117 ANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGA------SVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSI  190 (743)
T ss_pred             hccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCC------CCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHH
Confidence            0    1123569999999999999999999999998      444332              358999999999999999


Q ss_pred             HHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCC-----chhHHHHHHHHHhcccc
Q 025505          139 VELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD-----SAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       139 v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~-----~~~~~~~~~L~~~ga~~  192 (252)
                      +++|++      .|++++.+|..|+||||+|+.....     .....+.+++++.++..
T Consensus       191 v~lLl~------~gadin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~  243 (743)
T TIGR00870       191 VALLSE------DPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKL  243 (743)
T ss_pred             HHHHhc------CCcchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcc
Confidence            999995      8889999999999999999872200     01334667777777765

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.83  E-value=2e-20  Score=168.08  Aligned_cols=168  Identities=18%  Similarity=0.166  Sum_probs=128.5

Q ss_pred             ccCCCChHHHHHHhCC---CHHHHHHHhhcCccc---------cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 025505           12 KNQRGETTMHLLSTDG---DAETVRIFGEINREL---------CLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEK   79 (252)
Q Consensus        12 ~d~~g~t~L~~A~~~g---~~~~v~~Ll~~~~~~---------~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~   79 (252)
                      .+..|.||||.|+..+   ...++..+...+.+.         .......|.||||+|+..|+.+++++|+++| ++++.
T Consensus        78 ~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~G-Adv~~  156 (743)
T TIGR00870        78 RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERG-ASVPA  156 (743)
T ss_pred             CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCC-CCCCc
Confidence            4789999999999722   233444444444221         1112356999999999999999999999998 55554


Q ss_pred             cC--------------CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCC---------hH
Q 025505           80 LT--------------SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNK---------LK  136 (252)
Q Consensus        80 ~~--------------~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~---------~~  136 (252)
                      ++              ..|.||||.|+..++.+++++|++.++      +++.+|..|+||||+|+..+         ..
T Consensus       157 ~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~ga------din~~d~~g~T~Lh~A~~~~~~~~~~~~l~~  230 (743)
T TIGR00870       157 RACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPA------DILTADSLGNTLLHLLVMENEFKAEYEELSC  230 (743)
T ss_pred             CcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCc------chhhHhhhhhHHHHHHHhhhhhhHHHHHHHH
Confidence            32              358999999999999999999999998      88999999999999999886         23


Q ss_pred             HHHHHHHhcccccceeeee----ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          137 QIVELLIRENSNRRIMIRI----NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       137 ~~v~~Ll~~~~~~~~~~~~----~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      .+.+++++.++   ...+.    +..|.+|.||||+|+.    .++.+++++|++.+.+..
T Consensus       231 ~~~~~l~~ll~---~~~~~~el~~i~N~~g~TPL~~A~~----~g~~~l~~lLL~~~~~~k  284 (743)
T TIGR00870       231 QMYNFALSLLD---KLRDSKELEVILNHQGLTPLKLAAK----EGRIVLFRLKLAIKYKQK  284 (743)
T ss_pred             HHHHHHHHHHh---ccCChHhhhhhcCCCCCCchhhhhh----cCCccHHHHHHHHHHhcc
Confidence            46666765333   22222    5678999999999998    889999999999765543

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.83  E-value=6.6e-21  Score=148.56  Aligned_cols=143  Identities=23%  Similarity=0.252  Sum_probs=122.9

Q ss_pred             CCHHHHHHHhhcC----cc-----ccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHc---
Q 025505           27 GDAETVRIFGEIN----RE-----LCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKK---   94 (252)
Q Consensus        27 g~~~~v~~Ll~~~----~~-----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~---   94 (252)
                      .+.+.|+..+...    +.     +++ .|.+|.|+||||+..++.++|+.|++.+.++++.+++-|+||+++++..   
T Consensus       237 a~pe~V~~~l~~f~als~~lL~yvVNl-aDsNGNTALHYsVSHaNF~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk  315 (452)
T KOG0514|consen  237 SDPEQVEDYLAYFEALSPPLLEYVVNL-ADSNGNTALHYAVSHANFDVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLK  315 (452)
T ss_pred             CCHHHHHHHHHHHHhcChHHHHHHhhh-hcCCCCeeeeeeecccchHHHHHHhccCcccccccccccccHHHHHHHHhhc
Confidence            3567766655432    11     234 7999999999999999999999999999999999999999999998765   


Q ss_pred             --CChHHHHHHHHHHhccccccccccc-CCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505           95 --SRSDAFEALVDEAKNHRKEHLFTWK-DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus        95 --~~~~~~~~Ll~~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                        .+.++|+.|...|.       +|.+ ...|+|+|++|+..|+.++|+.||.      .|+|+|.+|.+|.|+|+.|++
T Consensus       316 ~~~d~~vV~~LF~mgn-------VNaKAsQ~gQTALMLAVSHGr~d~vk~LLa------cgAdVNiQDdDGSTALMCA~E  382 (452)
T KOG0514|consen  316 QPADRTVVERLFKMGD-------VNAKASQHGQTALMLAVSHGRVDMVKALLA------CGADVNIQDDDGSTALMCAAE  382 (452)
T ss_pred             chhhHHHHHHHHhccC-------cchhhhhhcchhhhhhhhcCcHHHHHHHHH------ccCCCccccCCccHHHhhhhh
Confidence              35678888888765       5554 4579999999999999999999995      999999999999999999999


Q ss_pred             cCCCchhHHHHHHHHH
Q 025505          172 NSQDSAFKEIGWIIQR  187 (252)
Q Consensus       172 ~~~~~~~~~~~~~L~~  187 (252)
                          +++.||+++|+.
T Consensus       383 ----HGhkEivklLLA  394 (452)
T KOG0514|consen  383 ----HGHKEIVKLLLA  394 (452)
T ss_pred             ----hChHHHHHHHhc
Confidence                999999999984

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.83  E-value=4.7e-20  Score=129.78  Aligned_cols=120  Identities=21%  Similarity=0.118  Sum_probs=109.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 025505           53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL  132 (252)
Q Consensus        53 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  132 (252)
                      .+.+|+..+....|+.|++..+..++.+|.+|.||||.|+.+|+.+|++.|+..++      ..+.+...||||||.||.
T Consensus        66 l~lwaae~nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gA------n~~a~T~~GWTPLhSAck  139 (228)
T KOG0512|consen   66 LLLWAAEKNRLTEVQRLLSEKANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGA------NKEAKTNEGWTPLHSACK  139 (228)
T ss_pred             HHHHHHhhccHHHHHHHHHhccccccccccccccHHHHHHhcCchHHHHHHHHccC------CcccccccCccchhhhhc
Confidence            46789999999999999999988999999999999999999999999999999999      789999999999999999


Q ss_pred             CChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHH
Q 025505          133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQR  187 (252)
Q Consensus       133 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~  187 (252)
                      ..+.+++-+||+      +|+|+++..+...||||+|+..   .+....+++|+.
T Consensus       140 WnN~~va~~LLq------hgaDVnA~t~g~ltpLhlaa~~---rn~r~t~~~Ll~  185 (228)
T KOG0512|consen  140 WNNFEVAGRLLQ------HGADVNAQTKGLLTPLHLAAGN---RNSRDTLELLLH  185 (228)
T ss_pred             ccchhHHHHHHh------ccCcccccccccchhhHHhhcc---cchHHHHHHHhh
Confidence            999999999996      9999999999999999998763   445667777764

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.83  E-value=7.6e-20  Score=144.94  Aligned_cols=124  Identities=16%  Similarity=0.146  Sum_probs=108.0

Q ss_pred             ccCCCCc-HHHHHHHcCCHHHHHHHHHhCCcccccc----CCCCchHHHHHHHcCChHHHHHHHHHHhccccccccccc-
Q 025505           46 VDNSSMI-PLHRAALDGNSDVIRALVSICPESLEKL----TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWK-  119 (252)
Q Consensus        46 ~~~~g~t-~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~----~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-  119 (252)
                      +|..|+| +||.|+..|+.+++++|+++| ++++.+    +..|.||||+|+..++.+++++|+++|+      +++.. 
T Consensus        28 ~d~~~~~~lL~~A~~~~~~eivk~LL~~G-AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GA------DVN~~~  100 (300)
T PHA02884         28 KNKICIANILYSSIKFHYTDIIDAILKLG-ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGA------DVNRYA  100 (300)
T ss_pred             cCcCCCCHHHHHHHHcCCHHHHHHHHHCC-CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CcCccc
Confidence            5666766 566777779999999999999 677776    4689999999999999999999999999      78886 


Q ss_pred             CCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHH
Q 025505          120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQ  186 (252)
Q Consensus       120 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~  186 (252)
                      +..|.||||+|+..++.+++++|++      .|++++.+|..|.||||+|..    .++.+++.++.
T Consensus       101 ~~~g~TpLh~Aa~~~~~eivklLL~------~GAdin~kd~~G~TpL~~A~~----~~~~~~~~~~~  157 (300)
T PHA02884        101 EEAKITPLYISVLHGCLKCLEILLS------YGADINIQTNDMVTPIELALM----ICNNFLAFMIC  157 (300)
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----hCChhHHHHhc
Confidence            4579999999999999999999996      899999999999999999987    56667765554

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.81  E-value=6.2e-19  Score=123.53  Aligned_cols=125  Identities=30%  Similarity=0.493  Sum_probs=115.1

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      .+|..|.||||+|+..|+.++++.|++.+.+... .+..|.+|||+|+..++.+++++|++.+ ..++..+..+.||+|+
T Consensus         2 ~~~~~g~t~l~~a~~~~~~~~i~~li~~~~~~~~-~~~~g~~~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~l~~   79 (126)
T cd00204           2 ARDEDGRTPLHLAASNGHLEVVKLLLENGADVNA-KDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHL   79 (126)
T ss_pred             CcCcCCCCHHHHHHHcCcHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCccccCCCCCCHHHH
Confidence            4568899999999999999999999999998765 8889999999999999999999999998 4677788999999999


Q ss_pred             HHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHH
Q 025505           91 AVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI  143 (252)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  143 (252)
                      |+..++.+++++|++.+.      ..+..+..+.||+++|...++.+++++|+
T Consensus        80 a~~~~~~~~~~~L~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          80 AARNGNLDVVKLLLKHGA------DVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHcCcHHHHHHHHHcCC------CCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            999999999999999886      67788899999999999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.80  E-value=9.8e-20  Score=153.84  Aligned_cols=180  Identities=19%  Similarity=0.161  Sum_probs=152.8

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      -.+++..|..|.+|||+|+..|+.++++.++.++...+. .+.+|.||||.|+..|+.+++.+|++++ .++-+.+..+.
T Consensus        72 ea~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na-~~~e~~tplhlaaqhgh~dvv~~Ll~~~-adp~i~nns~~  149 (854)
T KOG0507|consen   72 EALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNA-VNIENETPLHLAAQHGHLEVVFYLLKKN-ADPFIRNNSKE  149 (854)
T ss_pred             hhhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCc-ccccCcCccchhhhhcchHHHHHHHhcC-CCccccCcccc
Confidence            345778889999999999999999999999999966666 8899999999999999999999999999 78899999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhccccc--ccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKE--HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ  163 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~--~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  163 (252)
                      |+|.+|++.|..++++.|+...-.....  .....++..+.+|||+|+++|+.++++.|++      .|++++..... -
T Consensus       150 t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~~~~~~plHlaakngh~~~~~~ll~------ag~din~~t~~-g  222 (854)
T KOG0507|consen  150 TVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRPFPAIYPLHLAAKNGHVECMQALLE------AGFDINYTTED-G  222 (854)
T ss_pred             cHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCCCCCcCCcchhhhcchHHHHHHHHh------cCCCccccccc-c
Confidence            9999999999999999999872211110  0112234456789999999999999999996      99999987665 4


Q ss_pred             CHhHhhhhcCCCchhHHHHHHHHHhccccCCCCCC
Q 025505          164 TTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPA  198 (252)
Q Consensus       164 t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~~  198 (252)
                      |+||.|+.    .+..+++.+|++.|.........
T Consensus       223 talheaal----cgk~evvr~ll~~gin~h~~n~~  253 (854)
T KOG0507|consen  223 TALHEAAL----CGKAEVVRFLLEIGINTHIKNQH  253 (854)
T ss_pred             hhhhhHhh----cCcchhhhHHHhhcccccccccc
Confidence            89999888    88999999999999988764433

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.78  E-value=1.3e-18  Score=148.45  Aligned_cols=163  Identities=23%  Similarity=0.276  Sum_probs=141.3

Q ss_pred             cccccCCCChHHHHHHh---CCCHHHHHHHhhcCcccc----ccccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc-
Q 025505            9 ASIKNQRGETTMHLLST---DGDAETVRIFGEINRELC----LEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKL-   80 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~---~g~~~~v~~Ll~~~~~~~----~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-   80 (252)
                      ++.+...|+|.||.|..   .++.++++.|++..+.+.    ......|.||||.|+.+.+.++|++|++.+ ++++.+ 
T Consensus       136 ~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~g-ADV~aRa  214 (782)
T KOG3676|consen  136 LNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAG-ADVHARA  214 (782)
T ss_pred             cccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcC-CchhhHh
Confidence            55667889999999996   456799999999876532    223458999999999999999999999998 444332 


Q ss_pred             ----------------------CCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHH
Q 025505           81 ----------------------TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQI  138 (252)
Q Consensus        81 ----------------------~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (252)
                                            -..|+.||..||-.++++++++|+++++      +++.+|..|+|.||..+..-..++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gA------d~~aqDS~GNTVLH~lVi~~~~~M  288 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGA------DPNAQDSNGNTVLHMLVIHFVTEM  288 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCC------CCCccccCCChHHHHHHHHHHHHH
Confidence                                  1248899999999999999999999999      899999999999999999989999


Q ss_pred             HHHHHhcccccceeee--eecccCCCCCHhHhhhhcCCCchhHHHHHHHHHh
Q 025505          139 VELLIRENSNRRIMIR--INTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRA  188 (252)
Q Consensus       139 v~~Ll~~~~~~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~  188 (252)
                      ...+++      .|++  ...+|++|.|||.+|+.    .+..++.+.+++.
T Consensus       289 y~~~L~------~ga~~l~~v~N~qgLTPLtLAak----lGk~emf~~ile~  330 (782)
T KOG3676|consen  289 YDLALE------LGANALEHVRNNQGLTPLTLAAK----LGKKEMFQHILER  330 (782)
T ss_pred             HHHHHh------cCCCccccccccCCCChHHHHHH----hhhHHHHHHHHHh
Confidence            999997      5555  78899999999999999    9999999999988

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.77  E-value=1.4e-18  Score=132.08  Aligned_cols=115  Identities=22%  Similarity=0.304  Sum_probs=108.0

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++.-|+.|.+|||+||+.|+..+|+.|+.+|+.++. .+--..||||+|+..|+-++|+.|++.. ++++..+..|.|||
T Consensus        27 ln~gddhgfsplhwaakegh~aivemll~rgarvn~-tnmgddtplhlaaahghrdivqkll~~k-advnavnehgntpl  104 (448)
T KOG0195|consen   27 LNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGARVNS-TNMGDDTPLHLAAAHGHRDIVQKLLSRK-ADVNAVNEHGNTPL  104 (448)
T ss_pred             cccccccCcchhhhhhhcccHHHHHHHHhccccccc-ccCCCCcchhhhhhcccHHHHHHHHHHh-cccchhhccCCCch
Confidence            667789999999999999999999999999999987 6666789999999999999999999998 78999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT  131 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  131 (252)
                      ||||.-|.-.+++-|++.|+      .++.-+..|.|||..|-
T Consensus       105 hyacfwgydqiaedli~~ga------~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  105 HYACFWGYDQIAEDLISCGA------AVNICNKKGMTPLDKAK  141 (448)
T ss_pred             hhhhhhcHHHHHHHHHhccc------eeeecccCCCCchhhhc
Confidence            99999999999999999999      78899999999999875

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=2.5e-18  Score=113.49  Aligned_cols=83  Identities=24%  Similarity=0.442  Sum_probs=68.8

Q ss_pred             HHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHH
Q 025505           20 MHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA   99 (252)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~   99 (252)
                      ||+||..|+.+++++|++.+.+++.     |.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+..++.++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~   74 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGADINL-----GNTALHYAAENGNLEIVKLLLENG-ADINSQDKNGNTALHYAAENGNLEI   74 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTSTTTS-----SSBHHHHHHHTTTHHHHHHHHHTT-TCTT-BSTTSSBHHHHHHHTTHHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCCCCC-----CCCHHHHHHHcCCHHHHHHHHHhc-ccccccCCCCCCHHHHHHHcCCHHH
Confidence            6888888888888888887776653     778888888888888888888888 6778888888888888888888888


Q ss_pred             HHHHHHHHh
Q 025505          100 FEALVDEAK  108 (252)
Q Consensus       100 ~~~Ll~~~~  108 (252)
                      +++|+++++
T Consensus        75 ~~~Ll~~g~   83 (89)
T PF12796_consen   75 VKLLLEHGA   83 (89)
T ss_dssp             HHHHHHTTT
T ss_pred             HHHHHHcCC
Confidence            888888877

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.77  E-value=2.3e-18  Score=113.60  Aligned_cols=89  Identities=33%  Similarity=0.448  Sum_probs=79.0

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhC
Q 025505           54 LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLN  133 (252)
Q Consensus        54 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  133 (252)
                      ||+|+..|+.+++++|++.+ ..++.    |.||||+|+..|+.+++++|++.++      +++.++..|+||||+|+..
T Consensus         1 L~~A~~~~~~~~~~~ll~~~-~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~   69 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG-ADINL----GNTALHYAAENGNLEIVKLLLENGA------DINSQDKNGNTALHYAAEN   69 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT-STTTS----SSBHHHHHHHTTTHHHHHHHHHTTT------CTT-BSTTSSBHHHHHHHT
T ss_pred             CHHHHHcCCHHHHHHHHHCc-CCCCC----CCCHHHHHHHcCCHHHHHHHHHhcc------cccccCCCCCCHHHHHHHc
Confidence            79999999999999999987 44444    8899999999999999999999999      8899999999999999999


Q ss_pred             ChHHHHHHHHhcccccceeeeeeccc
Q 025505          134 KLKQIVELLIRENSNRRIMIRINTVN  159 (252)
Q Consensus       134 ~~~~~v~~Ll~~~~~~~~~~~~~~~~  159 (252)
                      ++.+++++|++      .|++++.+|
T Consensus        70 ~~~~~~~~Ll~------~g~~~~~~n   89 (89)
T PF12796_consen   70 GNLEIVKLLLE------HGADVNIRN   89 (89)
T ss_dssp             THHHHHHHHHH------TTT-TTSS-
T ss_pred             CCHHHHHHHHH------cCCCCCCcC
Confidence            99999999997      788887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.77  E-value=7.2e-18  Score=118.08  Aligned_cols=124  Identities=30%  Similarity=0.448  Sum_probs=112.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      .+..|.||||+|+..++.+++++|++.+ ......+..|.+|+|.|+..+..+++++|++.+.      .++..+..+.|
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~-~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~------~~~~~~~~~~~   75 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGA------DVNARDKDGNT   75 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCC
Confidence            5678999999999999999999999999 4557888999999999999999999999999987      67778889999


Q ss_pred             HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHH
Q 025505          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQ  186 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~  186 (252)
                      |+|+|+..++.+++++|++      .+.+++..+..|.||++.|..    .+..+++++|+
T Consensus        76 ~l~~a~~~~~~~~~~~L~~------~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~Ll  126 (126)
T cd00204          76 PLHLAARNGNLDVVKLLLK------HGADVNARDKDGRTPLHLAAK----NGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHcCcHHHHHHHHH------cCCCCcccCCCCCCHHHHHHh----cCCHHHHHHhC
Confidence            9999999999999999996      777888899999999999998    77888888774

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.71  E-value=7.2e-17  Score=138.02  Aligned_cols=185  Identities=18%  Similarity=0.236  Sum_probs=143.0

Q ss_pred             CcccCccccccc----cCCCChHHHHHHhCCCHHHHHHHhhcCcccccc-------c---------------cCCCCcHH
Q 025505            1 MARLWPQLASIK----NQRGETTMHLLSTDGDAETVRIFGEINRELCLE-------V---------------DNSSMIPL   54 (252)
Q Consensus         1 il~~~p~~~~~~----d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-------~---------------~~~g~t~L   54 (252)
                      ||+..|.+++..    .-.|.||||+|+.+.+.++|+.|++.|+|++..       +               -+.|..||
T Consensus       165 LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPL  244 (782)
T KOG3676|consen  165 LLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPL  244 (782)
T ss_pred             HHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHhhccccCcccccccccccCCcceeeeccCch
Confidence            356677777744    367999999999999999999999999998641       1               13578899


Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCC
Q 025505           55 HRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNK  134 (252)
Q Consensus        55 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~  134 (252)
                      .+||-.++.+++++|++++ ++++.+|..|+|.||..+..-..++..++++++++    .+...++..|-|||.+|++.|
T Consensus       245 SfAAC~nq~eivrlLl~~g-Ad~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~----~l~~v~N~qgLTPLtLAaklG  319 (782)
T KOG3676|consen  245 SFAACTNQPEIVRLLLAHG-ADPNAQDSNGNTVLHMLVIHFVTEMYDLALELGAN----ALEHVRNNQGLTPLTLAAKLG  319 (782)
T ss_pred             HHHHHcCCHHHHHHHHhcC-CCCCccccCCChHHHHHHHHHHHHHHHHHHhcCCC----ccccccccCCCChHHHHHHhh
Confidence            9999999999999999998 89999999999999999999999999999999984    147778999999999999999


Q ss_pred             hHHHHHHHHhc-ccc-------cceeeeeecccC--CCCCHhHhhhhcCCCchhHH----HHHHHHHhccc
Q 025505          135 LKQIVELLIRE-NSN-------RRIMIRINTVNK--EGQTTLQLCNANSQDSAFKE----IGWIIQRAIAQ  191 (252)
Q Consensus       135 ~~~~v~~Ll~~-~~~-------~~~~~~~~~~~~--~g~t~l~~a~~~~~~~~~~~----~~~~L~~~ga~  191 (252)
                      ..++.+.+++. ...       .....+++..|.  +.++.|.+.+.. ....+.+    .++-|++..++
T Consensus       320 k~emf~~ile~~k~~~W~YGpvtsslYpL~~iDT~~n~~SvLeivvyg-~~~eHl~Ll~~~i~~LL~~KW~  389 (782)
T KOG3676|consen  320 KKEMFQHILERRKFTDWAYGPVTSSLYPLNSIDTIGNENSVLEIVVYG-IKNEHLELLDGPIEELLEDKWK  389 (782)
T ss_pred             hHHHHHHHHHhhcccceeecccccccccchhcccccchhhhhhhhhcC-CcHHHHHHHhHHHHHHHHHHHH
Confidence            99999999985 211       112334444442  556777776543 2133332    44555554443

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.69  E-value=3.7e-17  Score=143.31  Aligned_cols=172  Identities=19%  Similarity=0.221  Sum_probs=155.4

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      ..+-.|+|-.||..|+.|.|++|+.+|+++.. +|..|++||.+|+..||..+|+.|+++..+.-...|+.+.|+|.+|+
T Consensus       754 e~n~~t~LT~acaggh~e~vellv~rganieh-rdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlac  832 (2131)
T KOG4369|consen  754 EPNIKTNLTSACAGGHREEVELLVVRGANIEH-RDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLAC  832 (2131)
T ss_pred             CccccccccccccCccHHHHHHHHHhcccccc-cccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEec
Confidence            45667999999999999999999999999998 99999999999999999999999999985555667899999999999


Q ss_pred             HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeeccc--CCCCCHhHhhh
Q 025505           93 KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN--KEGQTTLQLCN  170 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~--~~g~t~l~~a~  170 (252)
                      ..|..+++++||..++      ....++-...|||.+|..-|..+++..|++      .|..++.+.  +.|-.||++|.
T Consensus       833 sggr~~vvelLl~~ga------nkehrnvsDytPlsla~Sggy~~iI~~llS------~GseInSrtgSklgisPLmlat  900 (2131)
T KOG4369|consen  833 SGGRTRVVELLLNAGA------NKEHRNVSDYTPLSLARSGGYTKIIHALLS------SGSEINSRTGSKLGISPLMLAT  900 (2131)
T ss_pred             CCCcchHHHHHHHhhc------cccccchhhcCchhhhcCcchHHHHHHHhh------cccccccccccccCcchhhhhh
Confidence            9999999999999999      566778889999999999999999999997      887777664  68999999999


Q ss_pred             hcCCCchhHHHHHHHHHhccccCCCCCCCCC
Q 025505          171 ANSQDSAFKEIGWIIQRAIAQQSPQLPADGA  201 (252)
Q Consensus       171 ~~~~~~~~~~~~~~L~~~ga~~~~~~~~~~~  201 (252)
                      .    +++.+..+.|++.|-+++.++.-...
T Consensus       901 m----ngh~~at~~ll~~gsdiNaqIeTNrn  927 (2131)
T KOG4369|consen  901 M----NGHQAATLSLLQPGSDINAQIETNRN  927 (2131)
T ss_pred             h----ccccHHHHHHhcccchhccccccccc
Confidence            8    88999999999999999987766544

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.67  E-value=8.4e-16  Score=118.77  Aligned_cols=129  Identities=25%  Similarity=0.347  Sum_probs=120.5

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCC-----HHHHHHHHHhCC--ccccccC
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGN-----SDVIRALVSICP--ESLEKLT   81 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~-----~~~v~~Ll~~~~--~~~~~~~   81 (252)
                      ....+..+.++++.++..+..+++.+++..+.+++. .+..|.||||+|+..++     .++++.|++.+.  .....++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~  144 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNA-KDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRD  144 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCCccc-ccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccC
Confidence            445667799999999999999999999999999966 99999999999999999     999999999996  4788889


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ..|.||||+|+..|+.+++++|++.++      .++..+..|.|++++|+..++.++++.++.
T Consensus       145 ~~g~tpl~~A~~~~~~~~~~~ll~~~~------~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~  201 (235)
T COG0666         145 EDGNTPLHWAALNGDADIVELLLEAGA------DPNSRNSYGVTALDPAAKNGRIELVKLLLD  201 (235)
T ss_pred             CCCCchhHHHHHcCchHHHHHHHhcCC------CCcccccCCCcchhhhcccchHHHHHHHHh
Confidence            999999999999999999999999999      788889999999999999999999999996

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.64  E-value=5e-17  Score=142.50  Aligned_cols=180  Identities=18%  Similarity=0.202  Sum_probs=143.0

Q ss_pred             CccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCC
Q 025505            5 WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNG   84 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   84 (252)
                      ++.-+.-+|+.|.+||.+|+-.||..+|+.|+.+-+++....|..+.|+|.+||..|..++|++|+..+ +.-..++-..
T Consensus       779 rganiehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~~g-ankehrnvsD  857 (2131)
T KOG4369|consen  779 RGANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLNAG-ANKEHRNVSD  857 (2131)
T ss_pred             hcccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHHhh-ccccccchhh
Confidence            344567789999999999999999999999999988888878888999999999999999999999888 5556667777


Q ss_pred             chHHHHHHHcCChHHHHHHHHHHhccc-----------------------------cccccccc-CCCCCcHHHHHHhCC
Q 025505           85 ETALHLAVKKSRSDAFEALVDEAKNHR-----------------------------KEHLFTWK-DKEGNTVLHLATLNK  134 (252)
Q Consensus        85 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~-----------------------------~~~~~~~~-~~~g~t~Lh~A~~~~  134 (252)
                      .|||.+|...|..+++..|+..|...+                             ...++|.. ..+.+|+|-+|+..|
T Consensus       858 ytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNaqIeTNrnTaltla~fqg  937 (2131)
T KOG4369|consen  858 YTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINAQIETNRNTALTLALFQG  937 (2131)
T ss_pred             cCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhccccccccccceeeccccC
Confidence            888888888888888888888775332                             11133332 234567777777777


Q ss_pred             hHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          135 LKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       135 ~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      +.++|.+||.      ..+.+..+-+.|.|||+-++.    .+..|+-++|+..|+|.+-.
T Consensus       938 r~evv~lLLa------~~anvehRaktgltplme~As----gGyvdvg~~li~~gad~nas  988 (2131)
T KOG4369|consen  938 RPEVVFLLLA------AQANVEHRAKTGLTPLMEMAS----GGYVDVGNLLIAAGADTNAS  988 (2131)
T ss_pred             cchHHHHHHH------HhhhhhhhcccCCcccchhhc----CCccccchhhhhcccccccC
Confidence            7788888774      666777788899999999988    89999999999999998754

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.64  E-value=7.6e-15  Score=113.41  Aligned_cols=128  Identities=27%  Similarity=0.378  Sum_probs=118.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCC-----hHHHHHHHHHHh--cccccccccc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSR-----SDAFEALVDEAK--NHRKEHLFTW  118 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~-----~~~~~~Ll~~~~--~~~~~~~~~~  118 (252)
                      .+..+.+++|.++..+...++++++..+ .+++.++..|.||||+|+..++     .+++++|++.++  .     ..+.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~-----~~~~  142 (235)
T COG0666          69 RDLDGRLPLHSAASKGDDKIVKLLLASG-ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLD-----VNNL  142 (235)
T ss_pred             CCccccCHHHHHHHcCcHHHHHHHHHcC-CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCC-----Cccc
Confidence            5667899999999999999999999999 5669999999999999999999     999999999998  4     5677


Q ss_pred             cCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhc
Q 025505          119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAI  189 (252)
Q Consensus       119 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~g  189 (252)
                      .+..|+||||+|+..|+.+++++|++      .+.+++.++..|.|+++.|..    .+..+++..+++.+
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~------~~~~~~~~~~~g~t~l~~a~~----~~~~~~~~~l~~~~  203 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLE------AGADPNSRNSYGVTALDPAAK----NGRIELVKLLLDKG  203 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHh------cCCCCcccccCCCcchhhhcc----cchHHHHHHHHhcC
Confidence            79999999999999999999999996      788899999999999999998    88999999999977

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.61  E-value=3.4e-15  Score=94.33  Aligned_cols=103  Identities=19%  Similarity=0.215  Sum_probs=85.4

Q ss_pred             hHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCCh
Q 025505           18 TTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~   97 (252)
                      --+.|++..|.++-|+..+..|.+++  ....|++|||+|+.+|..+++++|+..+ ++++.+|+.|.|||..|+..||.
T Consensus         4 ~~~~W~vkNG~~DeVk~~v~~g~nVn--~~~ggR~plhyAAD~GQl~ilefli~iG-A~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    4 MSVAWNVKNGEIDEVKQSVNEGLNVN--EIYGGRTPLHYAADYGQLSILEFLISIG-ANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hhHhhhhccCcHHHHHHHHHccccHH--HHhCCcccchHhhhcchHHHHHHHHHhc-cccCCccccCCcHHHHHHHHhhH
Confidence            44678889999999999988887766  3447899999999999999999999999 78889999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccccccCCCCCcHHHH
Q 025505           98 DAFEALVDEAKNHRKEHLFTWKDKEGNTVLHL  129 (252)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~  129 (252)
                      ++|++|++.|+      +-.....+|.+.+..
T Consensus        81 ~cVklLL~~GA------drt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   81 DCVKLLLQNGA------DRTIHAPDGTALIEA  106 (117)
T ss_pred             HHHHHHHHcCc------ccceeCCCchhHHhh
Confidence            99999999988      455556666665543

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.58  E-value=1.4e-14  Score=91.61  Aligned_cols=104  Identities=20%  Similarity=0.218  Sum_probs=78.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 025505           53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL  132 (252)
Q Consensus        53 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  132 (252)
                      -+.|++..|..+-|+..+..+ .+++..- .|++|||+|+..|..+++++|+..|+      +++..|..|-|||-.|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g-~nVn~~~-ggR~plhyAAD~GQl~ilefli~iGA------~i~~kDKygITPLLsAvw   76 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEG-LNVNEIY-GGRTPLHYAADYGQLSILEFLISIGA------NIQDKDKYGITPLLSAVW   76 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcc-ccHHHHh-CCcccchHhhhcchHHHHHHHHHhcc------ccCCccccCCcHHHHHHH
Confidence            356778888888888777777 4555443 77888888888888888888888888      677888888888888888


Q ss_pred             CChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhh
Q 025505          133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCN  170 (252)
Q Consensus       133 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~  170 (252)
                      .|+.++|++||+      .|++-..+..+|.+.+..+-
T Consensus        77 EGH~~cVklLL~------~GAdrt~~~PdG~~~~eate  108 (117)
T KOG4214|consen   77 EGHRDCVKLLLQ------NGADRTIHAPDGTALIEATE  108 (117)
T ss_pred             HhhHHHHHHHHH------cCcccceeCCCchhHHhhcc
Confidence            888888888885      66666666677777665543

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.58  E-value=6.6e-15  Score=87.25  Aligned_cols=54  Identities=31%  Similarity=0.543  Sum_probs=37.6

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHH
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV   70 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll   70 (252)
                      |.||||+||..|+.+++++|++.+.+++. .|..|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~-~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINA-QDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT--B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHccCHHHHHHHC
Confidence            67788888888888888888877777776 5777888888888888888887775

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=4.7e-15  Score=88.33  Aligned_cols=56  Identities=23%  Similarity=0.334  Sum_probs=27.5

Q ss_pred             CcccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHH
Q 025505            1 MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRA   57 (252)
Q Consensus         1 il~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A   57 (252)
                      ||+..|..++..|..|.||||+||..|+.+++++|++.+.+++. +|..|+||||+|
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~-~d~~G~Tpl~~A   56 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNA-KDKDGQTPLHYA   56 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT----TTS--HHHH-
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCC-CcCCCCCHHHhC
Confidence            35555666777777788888888887788888887777777776 777778887776

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.52  E-value=5.5e-14  Score=124.35  Aligned_cols=112  Identities=21%  Similarity=0.212  Sum_probs=94.2

Q ss_pred             hHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCCh
Q 025505           18 TTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~   97 (252)
                      +.|+.|+..|+.++++.|++.|++++. .|..|.||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..++.
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gadin~-~d~~G~TpLh~Aa~~g~~eiv~~LL~~G-advn~~d~~G~TpLh~A~~~g~~  161 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGADPNC-RDYDGRTPLHIACANGHVQVVRVLLEFG-ADPTLLDKDGKTPLELAEENGFR  161 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHCCcH
Confidence            358899999999999999999999988 8999999999999999999999999999 78899999999999999999999


Q ss_pred             HHHHHHHHHHhc-ccccccccccCCCCCcHHHHHH
Q 025505           98 DAFEALVDEAKN-HRKEHLFTWKDKEGNTVLHLAT  131 (252)
Q Consensus        98 ~~~~~Ll~~~~~-~~~~~~~~~~~~~g~t~Lh~A~  131 (252)
                      +++++|+.++.. .......+..+..|.+|+..+.
T Consensus       162 ~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        162 EVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             HHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999998110 0011155566666766655443

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=7.3e-14  Score=114.35  Aligned_cols=118  Identities=18%  Similarity=0.218  Sum_probs=102.7

Q ss_pred             HHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCC
Q 025505           55 HRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNK  134 (252)
Q Consensus        55 h~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~  134 (252)
                      .-|+..|-.++|+.++..- .++...+..|.|+||-|+-.||.+||++|++.|+      ++|..|.+||||||+|+..+
T Consensus       555 LDaaLeGEldlVq~~i~ev-~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ga------nVNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  555 LDAALEGELDLVQRIIYEV-TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGA------NVNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HhhhhcchHHHHHHHHHhh-cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCC------cccCccCCCCchhhhhhhcC
Confidence            3478889999999999887 6788889999999999999999999999999999      89999999999999999999


Q ss_pred             hHHHHHHHHhcccccceeeeee-cccCCCCCHhHhhhhcCCCchhHHHHHHHHH
Q 025505          135 LKQIVELLIRENSNRRIMIRIN-TVNKEGQTTLQLCNANSQDSAFKEIGWIIQR  187 (252)
Q Consensus       135 ~~~~v~~Ll~~~~~~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~  187 (252)
                      +..+++.|++      .|+.+- ..-.++.|+...|-...  .++..|.++|..
T Consensus       628 nv~~ckqLVe------~GaavfAsTlSDmeTa~eKCee~e--eGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVE------SGAAVFASTLSDMETAAEKCEEME--EGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHh------ccceEEeeecccccchhhhcchhh--hhHHHHHHHHHH
Confidence            9999999997      555553 34478999999976543  677889999864

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.51  E-value=1.4e-13  Score=104.86  Aligned_cols=122  Identities=19%  Similarity=0.196  Sum_probs=98.3

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHc
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~   94 (252)
                      .-..||.-+...|..+....|++.-.+++. .|..|.|||..|+.+|+.+.+++|++.+.+....++..+.||||.|+..
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~vr~vn~-~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALS   89 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTVRQVNQ-RDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALS   89 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHhhhhhc-cCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHc
Confidence            345788888888888888888887666776 8888888888888888888888888888444445567788888888888


Q ss_pred             CChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHH
Q 025505           95 SRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI  143 (252)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  143 (252)
                      |+.++.++|++.|+      .....+.-|+|+-.+|+..|+.++|..+-
T Consensus        90 Gn~dvcrllldaGa------~~~~vNsvgrTAaqmAAFVG~H~CV~iIN  132 (396)
T KOG1710|consen   90 GNQDVCRLLLDAGA------RMYLVNSVGRTAAQMAAFVGHHECVAIIN  132 (396)
T ss_pred             CCchHHHHHHhccC------ccccccchhhhHHHHHHHhcchHHHHHHh
Confidence            88888888888888      56677788888888888888888777654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.51  E-value=6.9e-14  Score=82.82  Aligned_cols=54  Identities=30%  Similarity=0.471  Sum_probs=34.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHH
Q 025505           50 SMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV  104 (252)
Q Consensus        50 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll  104 (252)
                      |.||||+|+..|+.+++++|++++ .+++.+|.+|.||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~-~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHG-ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTT-SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCC-CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            567777777777777777777776 566666777777777777777777777664

...

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.49  E-value=9.9e-14  Score=122.78  Aligned_cols=109  Identities=23%  Similarity=0.246  Sum_probs=94.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 025505           53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL  132 (252)
Q Consensus        53 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  132 (252)
                      .|+.|+..|+.+.++.|++.+ .+++.+|..|.||||+|+..|+.+++++|++.++      +++..|..|.||||+|+.
T Consensus        85 ~L~~aa~~G~~~~vk~LL~~G-adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Ga------dvn~~d~~G~TpLh~A~~  157 (664)
T PTZ00322         85 ELCQLAASGDAVGARILLTGG-ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGA------DPTLLDKDGKTPLELAEE  157 (664)
T ss_pred             HHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHH
Confidence            588999999999999999999 6889999999999999999999999999999999      889999999999999999


Q ss_pred             CChHHHHHHHHhccc-ccceeeeeecccCCCCCHhHh
Q 025505          133 NKLKQIVELLIRENS-NRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus       133 ~~~~~~v~~Ll~~~~-~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      .++.+++++|++.+. ....+++.+..+..|.+|+..
T Consensus       158 ~g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~  194 (664)
T PTZ00322        158 NGFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLE  194 (664)
T ss_pred             CCcHHHHHHHHhCCCcccccCCCCCccccCCCCccch
Confidence            999999999997311 111366777777777777655

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=2.3e-13  Score=103.71  Aligned_cols=97  Identities=21%  Similarity=0.285  Sum_probs=91.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++.+|+.|.|+|..|+..|+.++|+.|++.|+|++...+..+.||||+|+..|+.++.++|++.| +.....+.-|.|+-
T Consensus        38 vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrllldaG-a~~~~vNsvgrTAa  116 (396)
T KOG1710|consen   38 VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAG-ARMYLVNSVGRTAA  116 (396)
T ss_pred             hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhcc-CccccccchhhhHH
Confidence            67899999999999999999999999999999999888889999999999999999999999999 78889999999999


Q ss_pred             HHHHHcCChHHHHHHHHH
Q 025505           89 HLAVKKSRSDAFEALVDE  106 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~  106 (252)
                      ..|+.-|+.++|..+=++
T Consensus       117 qmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  117 QMAAFVGHHECVAIINNH  134 (396)
T ss_pred             HHHHHhcchHHHHHHhcc
Confidence            999999999999876443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.46  E-value=4.6e-14  Score=84.02  Aligned_cols=45  Identities=36%  Similarity=0.459  Sum_probs=16.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHH
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLA   91 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a   91 (252)
                      .|..|.||||+||..|+.+++++|++.+ .+++.+|.+|.||||+|
T Consensus        12 ~d~~G~T~LH~A~~~g~~~~v~~Ll~~g-~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   12 QDKYGNTPLHWAARYGHSEVVRLLLQNG-ADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             --TTS--HHHHHHHHT-HHHHHHHHHCT---TT---TTS--HHHH-
T ss_pred             cCCCCCcHHHHHHHcCcHHHHHHHHHCc-CCCCCCcCCCCCHHHhC
Confidence            4555555555555555555555555333 45555555555555543

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.44  E-value=4.5e-13  Score=109.80  Aligned_cols=118  Identities=16%  Similarity=0.195  Sum_probs=101.1

Q ss_pred             HHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHH
Q 025505           20 MHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA   99 (252)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~   99 (252)
                      |.=|+..|..++|+..+..-.|... .++.|.|+||-|+..||.+||++|++.+ .+++..|++|+||||.|+..++..+
T Consensus       554 LLDaaLeGEldlVq~~i~ev~DpSq-pNdEGITaLHNAiCaghyeIVkFLi~~g-anVNa~DSdGWTPLHCAASCNnv~~  631 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTDPSQ-PNDEGITALHNAICAGHYEIVKFLIEFG-ANVNAADSDGWTPLHCAASCNNVPM  631 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcCCCC-CCccchhHHhhhhhcchhHHHHHHHhcC-CcccCccCCCCchhhhhhhcCchHH
Confidence            4567789999999999998888877 8999999999999999999999999999 8999999999999999999999999


Q ss_pred             HHHHHHHHhcccccccccccCCCCCcHHHHHH--hCChHHHHHHHHh
Q 025505          100 FEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT--LNKLKQIVELLIR  144 (252)
Q Consensus       100 ~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~--~~~~~~~v~~Ll~  144 (252)
                      ++.|++.|+.     .+-..-.++.|+..-+-  +.|..+|.++|..
T Consensus       632 ckqLVe~Gaa-----vfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  632 CKQLVESGAA-----VFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             HHHHHhccce-----EEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999984     33344456778777654  4577788888874

>PF13962 PGG: Domain of unknown function

Probab=99.26  E-value=4.9e-12  Score=86.67  Aligned_cols=44  Identities=34%  Similarity=0.517  Sum_probs=40.2

Q ss_pred             CCcchhhhhhHHHHHHHHHHHHHHhhcCCCCccccCCCcCCCCC
Q 025505          209 TRWPMQTRNVLLMVVVTIAAAFFMVACHLPDSLVREDTLAGKSL  252 (252)
Q Consensus       209 ~~~~~~~~~~~~~~a~li~~v~f~~~~~~pgg~~~~~~~~g~~~  252 (252)
                      +||.++.+++++++|+||+|++|+++++|||||+++++..|+++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~i   44 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPI   44 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCch
Confidence            36889999999999999999999999999999999877888874

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.15  E-value=2.7e-11  Score=104.48  Aligned_cols=87  Identities=25%  Similarity=0.364  Sum_probs=80.7

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      ..+.++.|..|+|+||+|+..|..+++++|+++|.++.......|+||||.|+.+|+++++.+|+.++ .....+|++|.
T Consensus        42 ~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g-~SL~i~Dkegl  120 (1267)
T KOG0783|consen   42 QNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKG-RSLRIKDKEGL  120 (1267)
T ss_pred             hhhhhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcC-CceEEecccCC
Confidence            45688999999999999999999999999999999999844457999999999999999999999999 78999999999


Q ss_pred             hHHHHHHH
Q 025505           86 TALHLAVK   93 (252)
Q Consensus        86 t~L~~a~~   93 (252)
                      +||...++
T Consensus       121 splq~~~r  128 (1267)
T KOG0783|consen  121 SPLQFLSR  128 (1267)
T ss_pred             CHHHHHhh
Confidence            99998776

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.09  E-value=4.8e-10  Score=91.60  Aligned_cols=95  Identities=20%  Similarity=0.169  Sum_probs=87.3

Q ss_pred             cccCCCChH------HHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCC
Q 025505           11 IKNQRGETT------MHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNG   84 (252)
Q Consensus        11 ~~d~~g~t~------L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   84 (252)
                      .+|++|.+.      ||-.++.|+.+..-.|+..|++.++.-...|.||||+|++.|+..-+++|+-+| ++++..|.+|
T Consensus       122 ~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYG-AD~~a~d~~G  200 (669)
T KOG0818|consen  122 CRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVYG-ADPGAQDSSG  200 (669)
T ss_pred             CCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhcc-CCCCCCCCCC
Confidence            456777765      999999999999999999999999977889999999999999999999999999 8999999999


Q ss_pred             chHHHHHHHcCChHHHHHHHHH
Q 025505           85 ETALHLAVKKSRSDAFEALVDE  106 (252)
Q Consensus        85 ~t~L~~a~~~~~~~~~~~Ll~~  106 (252)
                      .||+.+|-..||.++.+.|++.
T Consensus       201 mtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  201 MTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CcHHHHHHhcCchHHHHHHHHH
Confidence            9999999999999998888775

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.07  E-value=1.7e-10  Score=93.71  Aligned_cols=97  Identities=20%  Similarity=0.258  Sum_probs=77.2

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      .++.++..++++|++.|+...++.+.-.|.++.. +|.+.+|+||+|+..|+++++++|++....+++.+|+.|+|||.-
T Consensus       501 ~~~~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~-~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  501 PRENDTVINVMYAAKNGDLSALRRFALQGMDLET-KDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccccchhhhhhhhhcCCHHHHHHHHHhcccccc-cccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            4455667778888888888888888888888877 888888888888888888888888887767778888888888888


Q ss_pred             HHHcCChHHHHHHHHHHh
Q 025505           91 AVKKSRSDAFEALVDEAK  108 (252)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~  108 (252)
                      |...+|.+++++|-+...
T Consensus       580 A~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hHhcCcHHHHHHHHHHhc
Confidence            888888888888776544

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.97  E-value=3.1e-09  Score=88.46  Aligned_cols=118  Identities=21%  Similarity=0.204  Sum_probs=102.5

Q ss_pred             HHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCc-cccccCCCCchHHHHHHHcCChH
Q 025505           20 MHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE-SLEKLTSNGETALHLAVKKSRSD   98 (252)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~-~~~~~~~~g~t~L~~a~~~~~~~   98 (252)
                      +..|+..++.--++.....|.++.. ++.+..+.||+|+..|+-++|+++++++|. .....|..|+|+||-|+-.++..
T Consensus       870 il~av~~~D~~klqE~h~~gg~ll~-~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~  948 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNGGSLLI-QGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRA  948 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcCCceEe-eCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchH
Confidence            5666666665555556666777776 888899999999999999999999999974 45777899999999999999999


Q ss_pred             HHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           99 AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        99 ~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ++++|++.|+      .+...|..|.||-.-|-..|..+++.+|-+
T Consensus       949 vc~~lvdaga------sl~ktd~kg~tp~eraqqa~d~dlaayle~  988 (1004)
T KOG0782|consen  949 VCQLLVDAGA------SLRKTDSKGKTPQERAQQAGDPDLAAYLES  988 (1004)
T ss_pred             HHHHHHhcch------hheecccCCCChHHHHHhcCCchHHHHHhh
Confidence            9999999999      677889999999999999999999999875

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=98.95  E-value=7.5e-10  Score=90.11  Aligned_cols=99  Identities=17%  Similarity=0.188  Sum_probs=89.4

Q ss_pred             CCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccC
Q 025505           81 TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (252)
Q Consensus        81 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  160 (252)
                      +.++..++.+|++.|+...++.+.-.+.      +++..|.+.+|+||.|+..|+.+++++|++     ..+++++.+|.
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~------D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~-----~~kv~~~~kDR  571 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGM------DLETKDYDDRTALHVAAAEGHVEVVKFLLN-----ACKVDPDPKDR  571 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhcc------cccccccccchhheeecccCceeHHHHHHH-----HHcCCCChhhc
Confidence            4567788999999999999998888888      899999999999999999999999999998     78999999999


Q ss_pred             CCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          161 EGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       161 ~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .|+|||+-|..    .++.+++++|.++.-....
T Consensus       572 w~rtPlDdA~~----F~h~~v~k~L~~~~~~y~~  601 (622)
T KOG0506|consen  572 WGRTPLDDAKH----FKHKEVVKLLEEAQYPYTL  601 (622)
T ss_pred             cCCCcchHhHh----cCcHHHHHHHHHHhccccc
Confidence            99999999998    8899999999887665543

>PF13606 Ank_3: Ankyrin repeat

Probab=98.92  E-value=1.3e-09  Score=55.58  Aligned_cols=29  Identities=28%  Similarity=0.515  Sum_probs=21.1

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCcccc
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELC   43 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~   43 (252)
                      +|+||||+||+.|+.++|++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            46777777777777777777777777654

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.88  E-value=1.4e-09  Score=94.17  Aligned_cols=92  Identities=24%  Similarity=0.255  Sum_probs=74.5

Q ss_pred             HHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCC-CCCcHHHHHHhCChHHHHHHHHhcc
Q 025505           68 ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK-EGNTVLHLATLNKLKQIVELLIREN  146 (252)
Q Consensus        68 ~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~  146 (252)
                      ++-+.+....+.+|..|+|+||+++..+..+++++|+++|.      +++.+|. .|+||||-|..+|+.+++-.||+  
T Consensus        36 F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGi------dv~vqD~ESG~taLHRaiyyG~idca~lLL~--  107 (1267)
T KOG0783|consen   36 FSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGI------DVFVQDEESGYTALHRAIYYGNIDCASLLLS--  107 (1267)
T ss_pred             HHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCc------eeeeccccccchHhhHhhhhchHHHHHHHHh--
Confidence            33344434567888889999999998899999999999888      7777775 48899999999999999998885  


Q ss_pred             cccceeeeeecccCCCCCHhHhhhh
Q 025505          147 SNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus       147 ~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                          +|..+..+|++|.+||+..+.
T Consensus       108 ----~g~SL~i~Dkeglsplq~~~r  128 (1267)
T KOG0783|consen  108 ----KGRSLRIKDKEGLSPLQFLSR  128 (1267)
T ss_pred             ----cCCceEEecccCCCHHHHHhh
Confidence                888888889999999888553

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.87  E-value=7.8e-09  Score=86.16  Aligned_cols=119  Identities=18%  Similarity=0.252  Sum_probs=102.1

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhC
Q 025505           54 LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLN  133 (252)
Q Consensus        54 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~  133 (252)
                      |..|+..++.--++.+...+ .+...++.+..+.||+|+..|+.++|+|+++++..-    .++..|..|.|+||.|+-.
T Consensus       870 il~av~~~D~~klqE~h~~g-g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e----lld~~de~get~lhkaa~~  944 (1004)
T KOG0782|consen  870 ILRAVLSSDLMKLQETHLNG-GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE----LLDMADETGETALHKAACQ  944 (1004)
T ss_pred             HHHHHHhccHHHHHHHHhcC-CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH----HHHHHhhhhhHHHHHHHHh
Confidence            45566666665566666666 577888999999999999999999999999998632    6788899999999999999


Q ss_pred             ChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHH
Q 025505          134 KLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQR  187 (252)
Q Consensus       134 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~  187 (252)
                      ++-.+..+|++      .|+.+...|..|.||-..|..    .++.++..+|-+
T Consensus       945 ~~r~vc~~lvd------agasl~ktd~kg~tp~eraqq----a~d~dlaayle~  988 (1004)
T KOG0782|consen  945 RNRAVCQLLVD------AGASLRKTDSKGKTPQERAQQ----AGDPDLAAYLES  988 (1004)
T ss_pred             cchHHHHHHHh------cchhheecccCCCChHHHHHh----cCCchHHHHHhh
Confidence            99999999995      888899999999999999988    888999998864

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.81  E-value=7.6e-09  Score=54.23  Aligned_cols=30  Identities=17%  Similarity=0.395  Sum_probs=21.9

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCccccc
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELCL   44 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~   44 (252)
                      +|+||||+|+..|+.+++++|+++|++++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~   30 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINA   30 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTC
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCC
Confidence            467777777777777777777777777664

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.78  E-value=2.1e-08  Score=82.28  Aligned_cols=86  Identities=19%  Similarity=0.182  Sum_probs=72.1

Q ss_pred             HHHHHHHcCChHHHHHHHHHHhcccccccccccCC-CCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCH
Q 025505           87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK-EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT  165 (252)
Q Consensus        87 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  165 (252)
                      -||.+++.++.++.-.|+..|+      +.|..+. .|.||||+|++.|+..-+++|+      -.|+|+.+.|.+|.||
T Consensus       136 QLhasvRt~nlet~LRll~lGA------~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~------vYGAD~~a~d~~GmtP  203 (669)
T KOG0818|consen  136 QLHSSVRTGNLETCLRLLSLGA------QANFFHPEKGNTPLHVAAKAGQILQAELLA------VYGADPGAQDSSGMTP  203 (669)
T ss_pred             HHHHHhhcccHHHHHHHHHccc------ccCCCCcccCCchhHHHHhccchhhhhHHh------hccCCCCCCCCCCCcH
Confidence            3788999999999989999999      6676664 5899999999999999999998      4899999999999999


Q ss_pred             hHhhhhcCCCchhHHHHHHHHHh
Q 025505          166 LQLCNANSQDSAFKEIGWIIQRA  188 (252)
Q Consensus       166 l~~a~~~~~~~~~~~~~~~L~~~  188 (252)
                      +.+|-.    .++.++.+-|++.
T Consensus       204 ~~~AR~----~gH~~laeRl~e~  222 (669)
T KOG0818|consen  204 VDYARQ----GGHHELAERLVEI  222 (669)
T ss_pred             HHHHHh----cCchHHHHHHHHH
Confidence            999987    6666666666553

>PF13606 Ank_3: Ankyrin repeat

Probab=98.76  E-value=7.6e-09  Score=52.68  Aligned_cols=29  Identities=41%  Similarity=0.485  Sum_probs=26.0

Q ss_pred             CCCcHHHHHHhCChHHHHHHHHhcccccceeeeee
Q 025505          122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRIN  156 (252)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  156 (252)
                      +|+||||+||+.|+.+++++|++      .|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~------~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLE------HGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHH------cCCCCC
Confidence            48999999999999999999996      777775

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.71  E-value=1.2e-08  Score=53.42  Aligned_cols=33  Identities=36%  Similarity=0.481  Sum_probs=29.5

Q ss_pred             CCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccC
Q 025505          122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (252)
Q Consensus       122 ~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  160 (252)
                      +|+||||+|+..++.+++++|++      .|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~------~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLK------HGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHH------TTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHH------CcCCCCCCCC
Confidence            58999999999999999999996      8888888764

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.69  E-value=4.5e-08  Score=81.78  Aligned_cols=60  Identities=25%  Similarity=0.296  Sum_probs=29.7

Q ss_pred             CCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccc
Q 025505           83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (252)
Q Consensus        83 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  148 (252)
                      +|.|+||+|++.|+..+.++|+=++.      ++..+|..|+|+|.||-..|.-+++..|++.|..
T Consensus       660 ~grt~LHLa~~~gnVvl~QLLiWyg~------dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp  719 (749)
T KOG0705|consen  660 DGRTALHLAARKGNVVLAQLLIWYGV------DVMARDAHGRTALFYARQAGSQECIDVLLQYGCP  719 (749)
T ss_pred             CCcchhhhhhhhcchhHHHHHHHhCc------cceecccCCchhhhhHhhcccHHHHHHHHHcCCC
Confidence            34455555555555555555554444      4444455555555555555555555555554443

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.66  E-value=5.4e-08  Score=81.29  Aligned_cols=96  Identities=20%  Similarity=0.142  Sum_probs=78.5

Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      |..|....+...+-+|+.+|...  ..+-...+.+|.|+||+||+.|+..+.++|+      =.|+|+.++|..|+|||.
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~--e~~~t~~~~~grt~LHLa~~~gnVvl~QLLi------Wyg~dv~~rda~g~t~l~  699 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSRE--EVNETCGEGDGRTALHLAARKGNVVLAQLLI------WYGVDVMARDAHGRTALF  699 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCch--hhhccccCCCCcchhhhhhhhcchhHHHHHH------HhCccceecccCCchhhh
Confidence            45566666777778888877531  1122345667899999999999999999999      499999999999999999


Q ss_pred             hhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          168 LCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       168 ~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      +|-.    .+..|++.+|+++|.....-
T Consensus       700 yar~----a~sqec~d~llq~gcp~e~~  723 (749)
T KOG0705|consen  700 YARQ----AGSQECIDVLLQYGCPDECG  723 (749)
T ss_pred             hHhh----cccHHHHHHHHHcCCCcccc
Confidence            9988    88899999999999987654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.61  E-value=8.8e-08  Score=79.41  Aligned_cols=63  Identities=25%  Similarity=0.432  Sum_probs=31.1

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHh
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI   72 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~   72 (252)
                      ++.+|..|+||||.|+..|+.+.++.|+..++++.. ++..|++|||.|+..|+.+++..++.+
T Consensus        48 id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~-kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   48 IDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSI-KNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             eccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccc-cccccccHHHHHHHcCCHHHHHHHHHH
Confidence            444444455555555555555555555555554444 444555555555555555444444443

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.58  E-value=2e-07  Score=77.31  Aligned_cols=89  Identities=19%  Similarity=0.200  Sum_probs=73.8

Q ss_pred             hHHHHHHhCCCHHHHHHHhhc--CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcC
Q 025505           18 TTMHLLSTDGDAETVRIFGEI--NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~--~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~   95 (252)
                      -|||+++.....+-....+..  ...++. .|..|.||||+|+..|+...++.|+..+ +++..++..|++|||-|+..|
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~-~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~-Adv~~kN~~gWs~L~EAv~~g   99 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDR-RDPPGRTPLHLAVRLGHVEAARILLSAG-ADVSIKNNEGWSPLHEAVSTG   99 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceecc-ccCCCCccHHHHHHhcCHHHHHHHHhcC-CCccccccccccHHHHHHHcC
Confidence            459999988887665554332  334444 7889999999999999999999999999 788999999999999999999


Q ss_pred             ChHHHHHHHHHHh
Q 025505           96 RSDAFEALVDEAK  108 (252)
Q Consensus        96 ~~~~~~~Ll~~~~  108 (252)
                      +.+++..++.+..
T Consensus       100 ~~q~i~~vlr~~~  112 (560)
T KOG0522|consen  100 NEQIITEVLRHLK  112 (560)
T ss_pred             CHHHHHHHHHHhH
Confidence            9998888877643

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.47  E-value=4.8e-07  Score=65.54  Aligned_cols=65  Identities=17%  Similarity=0.143  Sum_probs=57.7

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcC-ccccccccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEIN-RELCLEVDNSSMIPLHRAALDGNSDVIRALVSIC   73 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~   73 (252)
                      -++.+|..|+|+|++|+..|..+.+.+|+.+| +.+.. .|..+.+++.+|-+.|..++++.|.+..
T Consensus         4 ~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv-~d~ssldaaqlaek~g~~~fvh~lfe~~   69 (223)
T KOG2384|consen    4 NINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGV-TDESSLDAAQLAEKGGAQAFVHSLFEND   69 (223)
T ss_pred             CccchhhhcchHHHHHhhhcchhHHHHHhccCcccccc-cccccchHHHHHHhcChHHHHHHHHHHh
Confidence            47889999999999999999999999999999 66665 8999999999999999999999998874

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.45  E-value=5.3e-07  Score=71.98  Aligned_cols=82  Identities=26%  Similarity=0.267  Sum_probs=66.2

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      |.+....+..|  -|..||+.|+.+.|++|++.|.+++. .|....+||.+|+..||.+++++|+++| +....-..+|.
T Consensus        28 ~s~~~~~~~f~--elceacR~GD~d~v~~LVetgvnVN~-vD~fD~spL~lAsLcGHe~vvklLLenG-AiC~rdtf~G~  103 (516)
T KOG0511|consen   28 PSVPLKKVPFG--ELCEACRAGDVDRVRYLVETGVNVNA-VDRFDSSPLYLASLCGHEDVVKLLLENG-AICSRDTFDGD  103 (516)
T ss_pred             cccccccCchH--HHHHHhhcccHHHHHHHHHhCCCcch-hhcccccHHHHHHHcCcHHHHHHHHHcC-CcccccccCcc
Confidence            44444444433  49999999999999999999999998 9999999999999999999999999999 55555556666


Q ss_pred             hHHHHH
Q 025505           86 TALHLA   91 (252)
Q Consensus        86 t~L~~a   91 (252)
                      -++.-|
T Consensus       104 RC~Yga  109 (516)
T KOG0511|consen  104 RCHYGA  109 (516)
T ss_pred             hhhhhh
Confidence            654433

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.41  E-value=8.1e-07  Score=77.81  Aligned_cols=128  Identities=17%  Similarity=0.049  Sum_probs=92.5

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCC---ccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcH
Q 025505           50 SMIPLHRAALDGNSDVIRALVSICP---ESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV  126 (252)
Q Consensus        50 g~t~Lh~A~~~g~~~~v~~Ll~~~~---~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~  126 (252)
                      +.--...|+..|+...|+..++...   -.++..|.-|.++|+.|+.+.+.++.++|++...      ..       ..+
T Consensus        25 ~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~------~~-------gdA   91 (822)
T KOG3609|consen   25 GEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSS------EE-------GDA   91 (822)
T ss_pred             hhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCcc------cc-------chH
Confidence            3344677888888888888777653   2567778888888888888888888888887654      11       457


Q ss_pred             HHHHHhCChHHHHHHHHhccccc---ceeeee-ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          127 LHLATLNKLKQIVELLIRENSNR---RIMIRI-NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~~~~~~---~~~~~~-~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |-+|+..|..+.|+.++.....-   ....+- ...-..+.||+.+|+.    .+++||+++|+.+|+....
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh----~NnyEil~~Ll~kg~~i~~  159 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAH----LNNFEILQCLLTRGHCIPI  159 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHH----hcchHHHHHHHHcCCCCCC
Confidence            78888888888888888632210   000011 1222468899999998    9999999999999998864

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.38  E-value=2.9e-07  Score=82.10  Aligned_cols=131  Identities=20%  Similarity=0.070  Sum_probs=98.9

Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           12 KNQRGETTMHLLSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        12 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      ..-.|.+-||.++..++...++.+++. +..... .|.+|...+|+ |..++.+..-+++.-....++.+|..|+||||+
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~~~~~e-ld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G~tpL~w  647 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAGSGDLE-LDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNGWTPLHW  647 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccccCchh-hcccCCChhhH-hhhcCCceeEEEEeecccccccccCCCCcccch
Confidence            345678889999999998888888885 443333 66777777888 445666666666655446788899999999999


Q ss_pred             HHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           91 AVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      |+.+|+..++..|++.++......+.......|.|+-.+|..+|+..+.-+|-+
T Consensus       648 Aa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  648 AAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             HhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            999999999999998887655444555666678888888888888777777664

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.36  E-value=3.9e-07  Score=81.35  Aligned_cols=131  Identities=18%  Similarity=0.190  Sum_probs=100.4

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHh-CCccccccCCCCchHHHHHHHcCChHHHHHHHH-HHhcccccccccccCCCC
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSI-CPESLEKLTSNGETALHLAVKKSRSDAFEALVD-EAKNHRKEHLFTWKDKEG  123 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~-~~~~~~~~~~~~~~~~~g  123 (252)
                      ....|++.+|+++..+..-.++.+++- + ......|.+|...+|.++. ++.+++-+++. .+.      .++.+|..|
T Consensus       570 ~~~r~~lllhL~a~~lyawLie~~~e~~~-~~~~eld~d~qgV~hfca~-lg~ewA~ll~~~~~~------ai~i~D~~G  641 (975)
T KOG0520|consen  570 VNFRDMLLLHLLAELLYAWLIEKVIEWAG-SGDLELDRDGQGVIHFCAA-LGYEWAFLPISADGV------AIDIRDRNG  641 (975)
T ss_pred             CCCcchHHHHHHHHHhHHHHHHHHhcccc-cCchhhcccCCChhhHhhh-cCCceeEEEEeeccc------ccccccCCC
Confidence            456799999999999999999988885 4 3446667888888888554 55555544443 333      688999999


Q ss_pred             CcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHh
Q 025505          124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRA  188 (252)
Q Consensus       124 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~  188 (252)
                      |||||||+..|+..++..|++.++.+..-.++......|.|+-.+|..    +++..+.-+|-+.
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s----~g~~gia~~lse~  702 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARA----NGHKGIAGYLSEK  702 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhc----ccccchHHHHhhh
Confidence            999999999999999999998777544444555556679999999887    7777777776654

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.30  E-value=5.2e-07  Score=80.63  Aligned_cols=78  Identities=28%  Similarity=0.318  Sum_probs=72.3

Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.|+||.|+..+...++++|++.++      ++|..|..|+||+|.+...|+...+..+++      ++++.++.+.+
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga------~vn~~d~~g~~plh~~~~~g~~~~~~~ll~------~~a~~~a~~~~  721 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGA------DVNALDSKGRTPLHHATASGHTSIACLLLK------RGADPNAFDPD  721 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCC------cchhhhccCCCcchhhhhhcccchhhhhcc------ccccccccCcc
Confidence            457899999999999999999999999      899999999999999999999999999995      88999999999


Q ss_pred             CCCHhHhhhh
Q 025505          162 GQTTLQLCNA  171 (252)
Q Consensus       162 g~t~l~~a~~  171 (252)
                      |++|+++|..
T Consensus       722 ~~~~l~~a~~  731 (785)
T KOG0521|consen  722 GKLPLDIAME  731 (785)
T ss_pred             CcchhhHHhh
Confidence            9999999876

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.26  E-value=3.5e-06  Score=74.01  Aligned_cols=125  Identities=21%  Similarity=0.119  Sum_probs=97.2

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHhhcCcc----ccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHH
Q 025505           14 QRGETTMHLLSTDGDAETVRIFGEINRE----LCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALH   89 (252)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~----~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   89 (252)
                      ..+.--...||..|+...|+..++....    ++. .|.-|.++|+.|+...+.++.++|+++... .       ..+|.
T Consensus        23 ~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc-~d~lGr~al~iai~nenle~~eLLl~~~~~-~-------gdALL   93 (822)
T KOG3609|consen   23 NEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINC-RDPLGRLALHIAIDNENLELQELLLDTSSE-E-------GDALL   93 (822)
T ss_pred             chhhHHHHHHHHcCChHHHHHHHHhccccccchhc-cChHhhhceecccccccHHHHHHHhcCccc-c-------chHHH
Confidence            4455567899999999999999885543    444 788999999999999999999999998721 1       56899


Q ss_pred             HHHHcCChHHHHHHHHHHhccccc----ccccccCCCCCcHHHHHHhCChHHHHHHHHhccc
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKE----HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~----~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  147 (252)
                      +|+..+..+.++.++.+.......    ......-..+-|||.+||..++.||+++|+.+|+
T Consensus        94 ~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~  155 (822)
T KOG3609|consen   94 LAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGH  155 (822)
T ss_pred             HHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCC
Confidence            999999999999999976521100    0111223346799999999999999999997554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.22  E-value=1.4e-06  Score=77.99  Aligned_cols=91  Identities=24%  Similarity=0.181  Sum_probs=80.8

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcH
Q 025505           47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV  126 (252)
Q Consensus        47 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~  126 (252)
                      -..|.|+||.|+..|..-.+++|++.+ ++++..|..|.+|+|.+...|+...+..|++.++      +.+..+.+|.++
T Consensus       653 ~~~~~s~lh~a~~~~~~~~~e~ll~~g-a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a------~~~a~~~~~~~~  725 (785)
T KOG0521|consen  653 LCIGCSLLHVAVGTGDSGAVELLLQNG-ADVNALDSKGRTPLHHATASGHTSIACLLLKRGA------DPNAFDPDGKLP  725 (785)
T ss_pred             hhcccchhhhhhccchHHHHHHHHhcC-CcchhhhccCCCcchhhhhhcccchhhhhccccc------cccccCccCcch
Confidence            346889999999999999999999999 6799999999999999999999999999999998      788999999999


Q ss_pred             HHHHHhCChHHHHHHHHh
Q 025505          127 LHLATLNKLKQIVELLIR  144 (252)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~  144 (252)
                      +++|....+.+++-++..
T Consensus       726 l~~a~~~~~~d~~~l~~l  743 (785)
T KOG0521|consen  726 LDIAMEAANADIVLLLRL  743 (785)
T ss_pred             hhHHhhhccccHHHHHhh
Confidence            999988866666666653

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.22  E-value=3.9e-06  Score=60.89  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=63.3

Q ss_pred             ccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHh
Q 025505           40 RELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAK  108 (252)
Q Consensus        40 ~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  108 (252)
                      .+++. .|.+|+|++++|+..|+.+.+.+|+.++...+...|..+.+++.+|-+.|+..+++.|.+...
T Consensus         3 ~~in~-rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    3 GNINA-RDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCccc-hhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            45666 899999999999999999999999999988899999999999999999999999999998865

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.10  E-value=1.1e-05  Score=64.66  Aligned_cols=55  Identities=22%  Similarity=0.268  Sum_probs=43.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHh
Q 025505           53 PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAK  108 (252)
Q Consensus        53 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  108 (252)
                      -|..||+.|+++.|+.|++.| .++|.+|....+||.+|+..||..++++|++.|+
T Consensus        39 elceacR~GD~d~v~~LVetg-vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGA   93 (516)
T KOG0511|consen   39 ELCEACRAGDVDRVRYLVETG-VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGA   93 (516)
T ss_pred             HHHHHhhcccHHHHHHHHHhC-CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCC
Confidence            477778888888888888877 6777777777888888888888888888887777

>smart00248 ANK ankyrin repeats

Probab=97.30  E-value=0.00042  Score=33.88  Aligned_cols=26  Identities=27%  Similarity=0.580  Sum_probs=14.5

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCcc
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRE   41 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~   41 (252)
                      |.||||+|+..++.++++.|++.+.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~   27 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGAD   27 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            45555555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.17  E-value=0.0014  Score=54.71  Aligned_cols=70  Identities=20%  Similarity=0.185  Sum_probs=55.1

Q ss_pred             CChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhh
Q 025505           95 SRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCN  170 (252)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~  170 (252)
                      ..+..+++|.+.+...+........+..-.|+||+|+..|.-++|.+||+      .|+|+..+|..|.||..++.
T Consensus       402 ~~p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Le------eg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  402 PEPDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLE------EGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             CchhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHH------hcCCchhcccCCCCcccccc
Confidence            34667888888776433322333344556799999999999999999997      88999999999999999965

>smart00248 ANK ankyrin repeats

Probab=96.81  E-value=0.0025  Score=30.88  Aligned_cols=24  Identities=38%  Similarity=0.541  Sum_probs=18.7

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhC
Q 025505           50 SMIPLHRAALDGNSDVIRALVSIC   73 (252)
Q Consensus        50 g~t~Lh~A~~~g~~~~v~~Ll~~~   73 (252)
                      |.||+|+|+..++.++++.|++.+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            667888888888888888887776

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.74  E-value=0.0039  Score=52.21  Aligned_cols=74  Identities=15%  Similarity=0.156  Sum_probs=57.6

Q ss_pred             HHHHHHHhhcCcccccc-----ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHH
Q 025505           29 AETVRIFGEINRELCLE-----VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL  103 (252)
Q Consensus        29 ~~~v~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~L  103 (252)
                      ...+++|.+.+.+.++.     .+..-.|+||+|+..|.-++|.+||+.+ +++-.+|..|.||..++.   +.++=..+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg-~Dp~~kd~~Grtpy~ls~---nkdVk~~F  479 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEG-CDPSTKDGAGRTPYSLSA---NKDVKSIF  479 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhc-CCchhcccCCCCcccccc---cHHHHHHH
Confidence            56778888877776542     3445679999999999999999999999 899999999999998886   34444444


Q ss_pred             HHH
Q 025505          104 VDE  106 (252)
Q Consensus       104 l~~  106 (252)
                      +.+
T Consensus       480 ~a~  482 (591)
T KOG2505|consen  480 IAR  482 (591)
T ss_pred             HHH
Confidence            443

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.15  E-value=0.16  Score=38.64  Aligned_cols=116  Identities=18%  Similarity=0.146  Sum_probs=78.6

Q ss_pred             HHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCC----CCcHHHH
Q 025505           54 LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE----GNTVLHL  129 (252)
Q Consensus        54 Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~----g~t~Lh~  129 (252)
                      |--|+...+.+-+.-++...        .+..+++.+++.++..+++-+|+.....       ..+|.-    +.--+.+
T Consensus       157 ledAV~AsN~~~i~~~VtdK--------kdA~~Am~~si~~~K~dva~~lls~f~f-------t~~dv~~~~~~~ydieY  221 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDK--------KDAHQAMWLSIGNAKEDVALYLLSKFNF-------TKQDVASMEKELYDIEY  221 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcch--------HHHHHHHHHHhcccHHHHHHHHHhhcce-------ecchhhhcCcchhhHHH
Confidence            45567777777666665543        2346788899988999999999986542       111111    1112333


Q ss_pred             HHh--CChHHHHHHHHhcccccceeeeeecc---cCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          130 ATL--NKLKQIVELLIRENSNRRIMIRINTV---NKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       130 A~~--~~~~~~v~~Ll~~~~~~~~~~~~~~~---~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      +..  ..+..+.+.+++     ..-+++|..   -+.|.|.|+-|.+    .++.+++.+|+++||-..
T Consensus       222 ~LS~h~a~~kvL~~Fi~-----~Glv~vN~~F~~~NSGdtMLDNA~K----y~~~emi~~Llk~GA~~~  281 (284)
T PF06128_consen  222 LLSEHSASYKVLEYFIN-----RGLVDVNKKFQKVNSGDTMLDNAMK----YKNSEMIAFLLKYGAISG  281 (284)
T ss_pred             HHhhcCCcHHHHHHHHh-----ccccccchhhhccCCcchHHHhHHh----cCcHHHHHHHHHcCcccc
Confidence            332  345678888887     344566643   4679999999999    889999999999999654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=94.84  E-value=0.75  Score=33.93  Aligned_cols=134  Identities=11%  Similarity=0.011  Sum_probs=87.4

Q ss_pred             HHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHH
Q 025505           20 MHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDA   99 (252)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~   99 (252)
                      |..|+..+..++++..-+...+-    -...++.+-.||+..+.++|+++-+.-+.      .+-.+.+-.|....+.++
T Consensus        50 l~HAVk~nmL~ILqkyke~L~~~----~~~~q~LFElAC~~qkydiV~WI~qnL~i------~~~~~iFdIA~~~kDlsL  119 (192)
T PF03158_consen   50 LYHAVKYNMLSILQKYKEDLENE----RYLNQELFELACEEQKYDIVKWIGQNLHI------YNPEDIFDIAFAKKDLSL  119 (192)
T ss_pred             HHHHHHcCcHHHHHHHHHHhhcc----hhHHHHHHHHHHHHccccHHHHHhhccCC------CCchhhhhhhhhccchhH
Confidence            56677888888888776544321    12356778899999999999999665421      223455778888887776


Q ss_pred             HH----HHHHHHhcccccccccccCCC----CCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505          100 FE----ALVDEAKNHRKEHLFTWKDKE----GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus       100 ~~----~Ll~~~~~~~~~~~~~~~~~~----g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      ..    ++.++..        +..+.+    -..-|.+|+..|-...+.-.++      .|.+++      .++|..|+.
T Consensus       120 yslGY~l~~~~~~--------~~~~~d~~~ll~~hl~~a~~kgll~F~letlk------ygg~~~------~~vls~Av~  179 (192)
T PF03158_consen  120 YSLGYKLLFNRMM--------SEHNEDPTSLLTQHLEKAAAKGLLPFVLETLK------YGGNVD------IIVLSQAVK  179 (192)
T ss_pred             HHHHHHHHHhhcc--------cccccCHHHHHHHHHHHHHHCCCHHHHHHHHH------cCCccc------HHHHHHHHH
Confidence            21    2222211        110111    1134778999999888877775      665554      278888998


Q ss_pred             cCCCchhHHHHHHHHH
Q 025505          172 NSQDSAFKEIGWIIQR  187 (252)
Q Consensus       172 ~~~~~~~~~~~~~L~~  187 (252)
                          .++..++.+++.
T Consensus       180 ----ynhRkIL~yfi~  191 (192)
T PF03158_consen  180 ----YNHRKILDYFIR  191 (192)
T ss_pred             ----hhHHHHHHHhhc
Confidence                888889888764

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=93.98  E-value=0.31  Score=37.16  Aligned_cols=115  Identities=12%  Similarity=0.111  Sum_probs=74.9

Q ss_pred             HHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC----CCCchHHHHHHHc-
Q 025505           20 MHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT----SNGETALHLAVKK-   94 (252)
Q Consensus        20 L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~----~~g~t~L~~a~~~-   94 (252)
                      |--|+...+.+-+.-++....+.        .++|-+|...+..+++-+|+.+..  ...+|    ..+.--+.++... 
T Consensus       157 ledAV~AsN~~~i~~~VtdKkdA--------~~Am~~si~~~K~dva~~lls~f~--ft~~dv~~~~~~~ydieY~LS~h  226 (284)
T PF06128_consen  157 LEDAVKASNYEEISNLVTDKKDA--------HQAMWLSIGNAKEDVALYLLSKFN--FTKQDVASMEKELYDIEYLLSEH  226 (284)
T ss_pred             HHHHHhhcCHHHHHHHhcchHHH--------HHHHHHHhcccHHHHHHHHHhhcc--eecchhhhcCcchhhHHHHHhhc
Confidence            55566666777666666544433        357888888888888888887652  11111    1122334444433 


Q ss_pred             -CChHHHHHHHHHHhccccccccc---ccCCCCCcHHHHHHhCChHHHHHHHHhccccc
Q 025505           95 -SRSDAFEALVDEAKNHRKEHLFT---WKDKEGNTVLHLATLNKLKQIVELLIRENSNR  149 (252)
Q Consensus        95 -~~~~~~~~Ll~~~~~~~~~~~~~---~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  149 (252)
                       ....+.+++++.|--     ++|   ..-..|.|.|.-|+..++.+++.+||+.|+..
T Consensus       227 ~a~~kvL~~Fi~~Glv-----~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  227 SASYKVLEYFINRGLV-----DVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             CCcHHHHHHHHhcccc-----ccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence             345678888887642     233   24577889999999999999999999888853

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.49  E-value=0.22  Score=31.22  Aligned_cols=49  Identities=18%  Similarity=0.119  Sum_probs=36.0

Q ss_pred             ChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhC
Q 025505           17 ETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSIC   73 (252)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~   73 (252)
                      ...|.+|+..|+.|+++.+++.+. +.       ..++..|+...+-+++++|++..
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~-~~-------~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNK-PD-------NDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhc-cH-------HHHHHHHHHHhhHHHHHHHHHhc
Confidence            455788888888888888876442 11       34688888888888888888875

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.14  E-value=0.32  Score=30.47  Aligned_cols=49  Identities=18%  Similarity=0.266  Sum_probs=39.8

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHH
Q 025505           51 MIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA  107 (252)
Q Consensus        51 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~  107 (252)
                      ...+..|+..|+.++++.+++....        ....+..|+...+.+++++|++.-
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~--------~~~~l~~AI~~H~n~i~~~l~~~y   55 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP--------DNDCLEYAIKSHNNEIADWLIENY   55 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc--------HHHHHHHHHHHhhHHHHHHHHHhc
Confidence            4568999999999999999976521        145689999999999999999863

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=88.87  E-value=1.1  Score=33.03  Aligned_cols=112  Identities=13%  Similarity=0.052  Sum_probs=73.5

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHH----HHHHhCCccccccCCC--CchH
Q 025505           14 QRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR----ALVSICPESLEKLTSN--GETA   87 (252)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~----~Ll~~~~~~~~~~~~~--g~t~   87 (252)
                      ...++.+-.||+..+.++|+++   +.++..   .+-.+-+-.|....+.+...    +++++. ......|..  -..-
T Consensus        74 ~~~q~LFElAC~~qkydiV~WI---~qnL~i---~~~~~iFdIA~~~kDlsLyslGY~l~~~~~-~~~~~~d~~~ll~~h  146 (192)
T PF03158_consen   74 YLNQELFELACEEQKYDIVKWI---GQNLHI---YNPEDIFDIAFAKKDLSLYSLGYKLLFNRM-MSEHNEDPTSLLTQH  146 (192)
T ss_pred             hHHHHHHHHHHHHccccHHHHH---hhccCC---CCchhhhhhhhhccchhHHHHHHHHHHhhc-ccccccCHHHHHHHH
Confidence            3566778899999999999999   333322   23445677888888887643    233332 111011110  1123


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      |..|+..|-...+-..+++|.      .+      ..++|..|+..++-.++.+++.
T Consensus       147 l~~a~~kgll~F~letlkygg------~~------~~~vls~Av~ynhRkIL~yfi~  191 (192)
T PF03158_consen  147 LEKAAAKGLLPFVLETLKYGG------NV------DIIVLSQAVKYNHRKILDYFIR  191 (192)
T ss_pred             HHHHHHCCCHHHHHHHHHcCC------cc------cHHHHHHHHHhhHHHHHHHhhc
Confidence            567888898888888888776      22      2289999999999999998873

These proteins may be involved in promoting survival of infected macrophages [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	252
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		5e-09
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-09
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-09
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		4e-08
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		7e-07
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
2xee_A	157	Structural Determinants For Improved Thermal Stabil		5e-07
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		2e-06
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		3e-06
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		4e-06
1uoh_A	226	Human Gankyrin Length = 226		5e-06
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-06
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		4e-05
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		4e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		4e-05
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		1e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		4e-04
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		2e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		2e-04
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-04
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		3e-04
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		3e-04
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		4e-04
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		5e-04
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		5e-04
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		6e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		6e-04
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		6e-04
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D+    PLH AA +G+ ++++ L+S   +   K  S+G T LH A K+   +  + L+ +
Sbjct: 34  DSDGRTPLHYAAKEGHKEIVKLLISKGADVNAK-DSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +         KD +G T LH A     K+IV+LLI + ++      +NT + +G+T L
Sbjct: 93  GAD------VNAKDSDGRTPLHYAAKEGHKEIVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
            L   +  +       K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 72/142 (50%), Gaps = 17/142 (11%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D+    PLH AA +G+ +V++ L+S   +   K  S+G+T LHLA +    +  + L+ +
Sbjct: 34  DSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK-DSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +         KD +G T LHLA  N  K++V+LL+ + ++       NT + +G+T L
Sbjct: 93  GAD------PNAKDSDGKTPLHLAAENGHKEVVKLLLSQGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
            L   +  +       K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 57.0 bits (136), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 40/142 (28%), Positives = 70/142 (49%), Gaps = 17/142 (11%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D+    PLH AA +G+ +V++ L+S   +   K  S+G T LH A +    +  + L+ +
Sbjct: 34  DSDGRTPLHHAAENGHKEVVKLLISKGADVNAK-DSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +         KD +G T LH A  N  K++V+LLI + ++      +NT + +G+T L
Sbjct: 93  GAD------VNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD------VNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
            L   +  +       K+ GW+
Sbjct: 141 DLAREHGNEEVVKLLEKQGGWL 162

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 39/128 (30%), Positives = 65/128 (50%), Gaps = 8/128 (6%)
Query: 16  GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE 75
           G T +HL + +G  E V++  E   ++  + D +   PLH AA +G+ +V++ L+    +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD 60
Query: 76  SLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKL 135
              K   NG T LHLA +    +  + L++   +         KDK G T LHLA  N  
Sbjct: 61  VNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGH 113
Query: 136 KQIVELLI 143
            ++V+LL+
Sbjct: 114 LEVVKLLL 121

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 13/122 (10%)
Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
           PLH AA +G+ +V++ L+    +   K   NG T LHLA +    +  + L++   +   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
                 KDK G T LHLA  N   ++V+LL+   ++      +N  +K G+T L L   N
Sbjct: 61  ---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARN 111
Query: 173 SQ 174
Sbjct: 112 GH 113

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D+    PLH AA +G+ ++++ L+S   +   K  S+G T LH A +    +  + L+ +
Sbjct: 34  DSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK-DSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +         KD +G T LH A  N  K+IV+LL+ + ++       NT + +G+T L
Sbjct: 93  GAD------PNAKDSDGRTPLHYAAENGHKEIVKLLLSKGAD------PNTSDSDGRTPL 140
Query: 167 QLCNANSQDSAF----KEIGWI 184
            L   +  +       K+ GW+
Sbjct: 141 DLAREHGNEEIVKLLEKQGGWL 162

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 51.2 bits (121), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 17/142 (11%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D     PLH AA +G+ +++  L+    +   K   +G T LHLA ++   +  E L+  
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +         KDK+G T LHLA      +IVE+L++  ++      +N  +K G+T  
Sbjct: 91  GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTPF 138
Query: 167 QLCNANSQDSAFKEIGWIIQRA 188
            L    + D+  ++I  ++Q+A
Sbjct: 139 DL----AIDNGNEDIAEVLQKA 156

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/142 (26%), Positives = 66/142 (46%), Gaps = 17/142 (11%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D     PLH AA +G+ +++  L+    +   K   +G T LHLA ++   +  E L+  
Sbjct: 32  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 90
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +         KDK+G T LHLA      +IVE+L++  ++      +N  +K G+T  
Sbjct: 91  GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTPF 138
Query: 167 QLCNANSQDSAFKEIGWIIQRA 188
            L      +    +I  ++Q+A
Sbjct: 139 DLAIREGHE----DIAEVLQKA 156

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 38/140 (27%), Positives = 67/140 (47%), Gaps = 17/140 (12%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D     PLH AA +G+ +++  L+    +   K   +G T LHLA ++   +  E L+  
Sbjct: 44  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-DKDGYTPLHLAAREGHLEIVEVLLKA 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +         KDK+G T LHLA      +IVE+L++  ++      +N  +K G+T  
Sbjct: 103 GAD------VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQ 186
            +    S D+  +++  I+Q
Sbjct: 151 DI----SIDNGNEDLAEILQ 166

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 12/147 (8%)
Query: 8   LASIKNQRGETTMHLLSTDGDAETVR----IFGEINRELCLEVDNSSMIPLHRAALDGNS 63
           +A+  ++ G+T +H+    G+   V     +F +  REL +  +N    PLH A +    
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLP 59
Query: 64  DVIRALVSI--CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
            V+R LV+    P +L++   +G+TA HLA +        AL+D A     +     ++ 
Sbjct: 60  SVVRLLVTAGASPMALDR---HGQTAAHLACEHRSPTCLRALLDSAAPGTLD--LEARNY 114
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSN 148
           +G T LH+A   + ++ V+LL+   ++
Sbjct: 115 DGLTALHVAVNTECQETVQLLLERGAD 141

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           LA+  +Q   T +H   + G  E V    ++   +  + D++   PLH AA  G  ++++
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVK 90
Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKE--------- 113
           AL+    + +  +  NG T LH A  K+R +    L++     +AK+H +          
Sbjct: 91  ALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 149
Query: 114 ------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
                 H+  +       +D EGNT LHLA   +  +  +LL+ + ++      I   NK
Sbjct: 150 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYIENK 203
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQRAI 189
           E +T LQ+            +G I++R +
Sbjct: 204 EEKTPLQVAKGG--------LGLILKRMV 224

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 51/209 (24%), Positives = 92/209 (44%), Gaps = 43/209 (20%)
Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           LA+  +Q   T +H   + G  E V    ++   +  + D++   PLH AA  G  ++++
Sbjct: 33  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVK 91
Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKE--------- 113
           AL+    + +  +  NG T LH A  K+R +    L++     +AK+H +          
Sbjct: 92  ALLGKGAQ-VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAK 150
Query: 114 ------HLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
                 H+  +       +D EGNT LHLA   +  +  +LL+ + ++      I   NK
Sbjct: 151 GNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYIENK 204
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQRAI 189
           E +T LQ+            +G I++R +
Sbjct: 205 EEKTPLQVAKGG--------LGLILKRMV 225

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 43/207 (20%)
Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           LA+  +Q   T +H   + G  E V    ++   +  + D++   PLH AA  G  ++++
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGXDEIVK 90
Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNH------------ 110
           AL+ +    +  +  NG T LH A  K+R +    L++     +AK+H            
Sbjct: 91  ALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Query: 111 ---RKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
              +  H+  +       +D EGNT LHLA   +  +  + L+ + ++      I   NK
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYIENK 203
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQR 187
           E +T LQ+            +G I++R
Sbjct: 204 EEKTPLQVAKGG--------LGLILKR 222

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 17/135 (12%)
Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
           PLH AA  G+ +++  L+    + +    + G T LHLA      +  E L+    +   
Sbjct: 50  PLHLAAKTGHLEIVEVLLKYGAD-VNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD--- 105
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
                 KD EG T LHLA  +   +IVE+L++  ++      +N  +K G+T   +    
Sbjct: 106 ---VNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGAD------VNAQDKFGKTAFDI---- 152
Query: 173 SQDSAFKEIGWIIQR 187
           S D+  +++  I+Q+
Sbjct: 153 SIDNGNEDLAEILQK 167

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 43/207 (20%)
Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           LA+  +Q   T +H   + G  E V    ++   +  + D++   PLH AA  G  ++++
Sbjct: 32  LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN-DKDDAGWSPLHIAASAGRDEIVK 90
Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNH------------ 110
           AL+ +    +  +  NG T LH A  K+R +    L++     +AK+H            
Sbjct: 91  ALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAK 149
Query: 111 ---RKEHLFTW-------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
              +  H+  +       +D EGNT LHLA   +  +  + L+ + ++      I   NK
Sbjct: 150 GNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYIENK 203
Query: 161 EGQTTLQLCNANSQDSAFKEIGWIIQR 187
           E +T LQ+            +G I++R
Sbjct: 204 EEKTPLQVAKGG--------LGLILKR 222

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 13/134 (9%)
Query: 46  VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
           VDN+ + PLH AA+ G+ +++  L+    + ++     G T LHLA      +  E L+ 
Sbjct: 43  VDNTGLTPLHLAAVSGHLEIVEVLLKHGAD-VDAADVYGFTPLHLAAMTGHLEIVEVLLK 101
Query: 106 EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT 165
              +          D  G+T LHLA      +IVE+L++  ++      +N  +K G+T 
Sbjct: 102 YGAD------VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGAD------VNAQDKFGKTA 149
Query: 166 LQLCNANSQDSAFK 179
             +   N  +   K
Sbjct: 150 FDISIDNGNEDLAK 163

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
           PLH AA +G+ +V++ L+    +   K   NG T LHLA +    +  + L++   +   
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGADVNAK-DKNGRTPLHLAARNGHLEVVKLLLEAGAD--- 60
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
                 KDK G T LHLA  N   ++V+LL+
Sbjct: 61  ---VNAKDKNGRTPLHLAARNGHLEVVKLLL 88

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 12/92 (13%)
Query: 83  NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
           NG T LHLA +    +  + L++   +         KDK G T LHLA  N   ++V+LL
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPLHLAARNGHLEVVKLL 54
Query: 143 IRENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
           +   ++      +N  +K G+T L L   N  
Sbjct: 55  LEAGAD------VNAKDKNGRTPLHLAARNGH 80

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D S + PLH AA  G+ +++  L+    + +  +   G T LHLA      +  E L+  
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIXGSTPLHLAALIGHLEIVEVLLKH 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +     + TW    G+T LHLA +    +IVE+L++  ++      +N  +K G+T  
Sbjct: 103 GADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
            +    S D+  +++  I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 19/141 (13%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPE-SLEKLTSNGETALHLAVKKSRSDAFEALVD 105
           DN    PLH AA +G+ +++  L+    + +   LT  G T LHLA      +  E L+ 
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLLKNGADVNASDLT--GITPLHLAAATGHLEIVEVLLK 101
Query: 106 EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT 165
              +          D +G+T LHLA      +IVE+L++  ++      +N  +K G+T 
Sbjct: 102 HGAD------VNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGAD------VNAQDKFGKTA 149
Query: 166 LQLCNANSQDSAFKEIGWIIQ 186
             +    S D+  +++  I+Q
Sbjct: 150 FDI----SIDNGNEDLAEILQ 166

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D S + PLH AA  G+ +++  L+    + +  +   G T LHLA      +  E L+  
Sbjct: 44  DASGLTPLHLAATYGHLEIVEVLLKHGAD-VNAIDIMGSTPLHLAALIGHLEIVEVLLKH 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +     + TW    G+T LHLA +    +IVE+L++  ++      +N  +K G+T  
Sbjct: 103 GADVNA--VDTW----GDTPLHLAAIMGHLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
            +    S D+  +++  I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 49/90 (54%), Gaps = 7/90 (7%)
Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
           PLH AA +G+++ ++ L+S   + +   + +G T LHLA K   ++  + L+ +  +   
Sbjct: 12  PLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD--- 67
Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
                 + K+GNT  HLA  N   +IV+LL
Sbjct: 68  ---VNARSKDGNTPEHLAKKNGHHEIVKLL 94

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 65/141 (46%), Gaps = 17/141 (12%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           DN+   PLH AA  G+ +++  L+    + ++     G T LHLA      +  E L+  
Sbjct: 44  DNTGTTPLHLAAYSGHLEIVEVLLKHGAD-VDASDVFGYTPLHLAAYWGHLEIVEVLLKN 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +          D +G T LHLA      +IVE+L++  ++      +N  +K G+T  
Sbjct: 103 GAD------VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
            +    S D+  +++  I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/167 (25%), Positives = 77/167 (46%), Gaps = 30/167 (17%)
Query: 27  GDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE--SLEKL 80
           G  + VRI      ++N E     D+S   PLH AA+ G+ +++  L+    +  + +K+
Sbjct: 25  GQDDEVRILMANGADVNAE-----DDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKM 79
Query: 81  TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
              G+T LHLA      +  E L+    +          D  G T LHLA      +IVE
Sbjct: 80  ---GDTPLHLAALYGHLEIVEVLLKNGAD------VNATDTYGFTPLHLAADAGHLEIVE 130
Query: 141 LLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQR 187
           +L++  ++      +N  +K G+T   +    S D+  +++  I+Q+
Sbjct: 131 VLLKYGAD------VNAQDKFGKTAFDI----SIDNGNEDLAEILQK 167

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 6   PQLASIKNQRGETTMHL-LSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNS 63
           P L   K+Q G   +H  +S      T  +  ++ N  L    D+S   P H A   GN 
Sbjct: 26  PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 64  DVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
           +V+++L    + P+ L K+T+ G T LHLAV K   +  + L++   + R       KDK
Sbjct: 86  EVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KDK 138
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                LH A      +++ELL     +      +N  +K+G T L
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 6   PQLASIKNQRGETTMHL-LSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNS 63
           P L   K+Q G   +H  +S      T  +  ++ N  L    D+S   P H A   GN 
Sbjct: 26  PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 64  DVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
           +V+++L    + P+ L K+T+ G T LHLAV K   +  + L++   + R       KDK
Sbjct: 86  EVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KDK 138
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                LH A      +++ELL     +      +N  +K+G T L
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 16/165 (9%)
Query: 6   PQLASIKNQRGETTMHL-LSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNS 63
           P L   K+Q G   +H  +S      T  +  ++ N  L    D+S   P H A   GN 
Sbjct: 26  PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNL 85
Query: 64  DVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
           +V+++L    + P+ L K+T+ G T LHLAV K   +  + L++   + R       KDK
Sbjct: 86  EVVKSLYDRPLKPD-LNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KDK 138
Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                LH A      +++ELL     +      +N  +K+G T L
Sbjct: 139 FNQIPLHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 36/141 (25%), Positives = 66/141 (46%), Gaps = 17/141 (12%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D S   PLH AA +G+ +++  L+    + +  +   G T L LA      +  E L+  
Sbjct: 44  DASGWTPLHLAAFNGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKN 102
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +          D EG+T LHLA +    +IVE+L++  ++      +N  +K G+T  
Sbjct: 103 GAD------VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGAD------VNAQDKFGKTAF 150
Query: 167 QLCNANSQDSAFKEIGWIIQR 187
            +    S D+  +++  I+Q+
Sbjct: 151 DI----SIDNGNEDLAEILQK 167

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 26/164 (15%)
Query: 27  GDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTS 82
           G  + VRI      ++N E     D     PLH AA  G+ +++  L+    + +  L  
Sbjct: 25  GQDDEVRILMANGADVNAE-----DTYGDTPLHLAARVGHLEIVEVLLKNGAD-VNALDF 78
Query: 83  NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
           +G T LHLA K+   +  E L+    +          D  G+T LHLA      +IVE+L
Sbjct: 79  SGSTPLHLAAKRGHLEIVEVLLKYGAD------VNADDTIGSTPLHLAADTGHLEIVEVL 132
Query: 143 IRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQ 186
           ++  ++      +N  +K G+T   +    S D+  +++  I+Q
Sbjct: 133 LKYGAD------VNAQDKFGKTAFDI----SIDNGNEDLAEILQ 166

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 7/102 (6%)
Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           D++ + PLH AA +G  +++  L+    + +    S G T LHLA      +  E L+  
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLLKNGAD-VNASDSAGITPLHLAAYDGHLEIVEVLLKH 94
Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
             +          D+ G T LHLA L+   +IVE+L++  ++
Sbjct: 95  GAD------VNAYDRAGWTPLHLAALSGQLEIVEVLLKHGAD 130

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	252
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	9e-19
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-18
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-16
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-18
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-17
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-16
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-15
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-09
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-09
2rfa_A	232	Transient receptor potential cation channel subfa	5e-18
2rfa_A	232	Transient receptor potential cation channel subfa	2e-15
2rfa_A	232	Transient receptor potential cation channel subfa	3e-13
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	6e-18
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-17
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-17
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-16
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	6e-13
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-05
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-17
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	5e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-17
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-15
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-14
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-17
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	4e-15
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-10
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	3e-17
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-16
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-15
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-17
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	5e-17
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	9e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	8e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	5e-17
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-15
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-17
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	6e-13
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	7e-06
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-17
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	4e-16
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-14
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-16
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-05
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-16
3hra_A	201	Ankyrin repeat family protein; structural protein;	5e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-16
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-13
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-16
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-14
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-16
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-15
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-13
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-16
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	7e-14
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-13
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-06
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-16
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-13
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	9e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	6e-06
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-16
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-15
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-13
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-09
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	7e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-10
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-06
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-16
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-14
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-08
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	6e-04
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-15
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-12
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-05
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	5e-12
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-15
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	4e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-04
2etb_A	256	Transient receptor potential cation channel subfam	3e-15
2etb_A	256	Transient receptor potential cation channel subfam	4e-12
2etb_A	256	Transient receptor potential cation channel subfam	4e-10
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-15
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-14
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	4e-15
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-14
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-09
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	6e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	9e-15
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-08
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	9e-14
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-13
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-08
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-06
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	9e-05
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-08
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-13
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-08
2pnn_A	273	Transient receptor potential cation channel subfa	5e-13
2pnn_A	273	Transient receptor potential cation channel subfa	2e-12
2pnn_A	273	Transient receptor potential cation channel subfa	6e-10
2pnn_A	273	Transient receptor potential cation channel subfa	1e-07
2pnn_A	273	Transient receptor potential cation channel subfa	6e-05
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-12
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-12
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-10
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-12
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	7e-09
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	6e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-04
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-10
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	2e-08
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	5e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-10
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	8e-07
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	2e-04
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-10
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	8e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	6e-06
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-08
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	5e-06
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 81.3 bits (202), Expect = 9e-19
 Identities = 32/161 (19%), Positives = 62/161 (38%), Gaps = 23/161 (14%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +++Q   + +H  +  G  +   +       I+             PL  AA + + + +
Sbjct: 6   MEHQNKRSPLHAAAEAGHVDICHMLVQAGANID-----TCSEDQRTPLMEAAENNHLEAV 60

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNT 125
           + L+      ++   + G T LHLA KK   +  + L+     +         +D  G T
Sbjct: 61  KYLIKAGAL-VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNC------QDDGGWT 113

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            +  AT  K   +V+LL+ + S+      IN  + E    L
Sbjct: 114 PMIWATEYKHVDLVKLLLSKGSD------INIRDNEENICL 148

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 80.5 bits (200), Expect = 2e-18
 Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 25/161 (15%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            ++   T +   + +   E V+        ++       D      LH AA  G+ +V++
Sbjct: 40  CSEDQRTPLMEAAENNHLEAVKYLIKAGALVD-----PKDAEGSTCLHLAAKKGHYEVVQ 94

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNT 125
            L+S     +      G T +  A +    D  + L+ + +  N         +D E N 
Sbjct: 95  YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI--------RDNEENI 146

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            LH A  +    I E+L+    +      ++ VN  G + L
Sbjct: 147 CLHWAAFSGCVDIAEILLAAKCD------LHAVNIHGDSPL 181

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 74.4 bits (184), Expect = 4e-16
 Identities = 38/172 (22%), Positives = 63/172 (36%), Gaps = 33/172 (19%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF-----GEINRELCLEVDNSSMIPLHRAALDGNSDV 65
            K+  G T +HL +  G  E V+        ++N       D+    P+  A    + D+
Sbjct: 72  PKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVN-----CQDDGGWTPMIWATEYKHVDL 126

Query: 66  IRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKD 120
           ++ L+S    I         +     LH A      D  E L+      H         +
Sbjct: 127 VKLLLSKGSDI-----NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAV-------N 174

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
             G++ LH+A        V L +  +S+      +   NKEG+T LQ  + N
Sbjct: 175 IHGDSPLHIAARENRYDCVVLFLSRDSD------VTLKNKEGETPLQCASLN 220

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 72.8 bits (180), Expect = 1e-15
 Identities = 33/142 (23%), Positives = 59/142 (41%), Gaps = 16/142 (11%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            ++  G T M   +     + V++      +IN       DN   I LH AA  G  D+ 
Sbjct: 106 CQDDGGWTPMIWATEYKHVDLVKLLLSKGSDIN-----IRDNEENICLHWAAFSGCVDIA 160

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV 126
             L++   + L  +  +G++ LH+A +++R D     +    +       T K+KEG T 
Sbjct: 161 EILLAAKCD-LHAVNIHGDSPLHIAARENRYDCVVLFLSRDSD------VTLKNKEGETP 213

Query: 127 LHLATLNKLKQIVELLIRENSN 148
           L  A+LN        + +   +
Sbjct: 214 LQCASLNSQVWSALQMSKALQD 235

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 82.2 bits (204), Expect = 3e-18
 Identities = 41/164 (25%), Positives = 66/164 (40%), Gaps = 26/164 (15%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            ++ +G T +HL + +G AE V +        N       + S + PLH  A +G+  V 
Sbjct: 240 AESVQGVTPLHLAAQEGHAEMVALLLSKQANGN-----LGNKSGLTPLHLVAQEGHVPVA 294

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AK-NHRKEHLFTWKDKEGN 124
             L+      ++  T  G T LH+A         + L+   A  N         K K G 
Sbjct: 295 DVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNA--------KTKLGY 345

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
           + LH A       IV LL++  ++       N V+ +G T L +
Sbjct: 346 SPLHQAAQQGHTDIVTLLLKNGAS------PNEVSSDGTTPLAI 383

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 79.1 bits (196), Expect = 4e-17
 Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 23/163 (14%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           + N+ G T +HL++ +G      +       ++             PLH A+  GN  ++
Sbjct: 273 LGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-----ATTRMGYTPLHVASHYGNIKLV 327

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA--KNHRKEHLFTWKDKEGN 124
           + L+    + +   T  G + LH A ++  +D    L+      N            +G 
Sbjct: 328 KFLLQHQAD-VNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE--------VSSDGT 378

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ 167
           T L +A       + ++L            +   +K   +  +
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSF---VLVSDKHRMSFPE 418

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 78.3 bits (194), Expect = 6e-17
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 26/162 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
              + G T +H+     + + V++     G  +         +   PLH AA     +V 
Sbjct: 174 AAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPH-----SPAWNGYTPLHIAAKQNQVEVA 228

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AK-NHRKEHLFTWKDKEGN 124
           R+L+          +  G T LHLA ++  ++    L+ + A  N          +K G 
Sbjct: 229 RSLLQYGGS-ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL--------GNKSGL 279

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           T LHL        + ++LI+          ++   + G T L
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVM------VDATTRMGYTPL 315

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 1e-16
 Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 34/168 (20%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           + N + ET +H+ +  G  E  +       ++N             PLH AA  G+++++
Sbjct: 42  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-----AKAKDDQTPLHCAARIGHTNMV 96

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKD 120
           + L+              T+ G T LH+A ++   +   AL+++  ++            
Sbjct: 97  KLLLENNANP-----NLATTAGHTPLHIAAREGHVETVLALLEKEASQAC--------MT 143

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
           K+G T LH+A      ++ ELL+  +++       N   K G T L +
Sbjct: 144 KKGFTPLHVAAKYGKVRVAELLLERDAH------PNAAGKNGLTPLHV 185

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 77.1 bits (191), Expect = 2e-16
 Identities = 33/166 (19%), Positives = 61/166 (36%), Gaps = 34/166 (20%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
              + G T +H+ S  G    V+         N       +     PLH AA  G+++V 
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGASPN-----VSNVKVETPLHMAARAGHTEVA 63

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AK-NHRKEHLFTWKD 120
           + L+     +          + +T LH A +   ++  + L++  A  N           
Sbjct: 64  KYLLQNKAKV-----NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNL--------AT 110

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             G+T LH+A      + V  L+ + ++         + K+G T L
Sbjct: 111 TAGHTPLHIAAREGHVETVLALLEKEAS------QACMTKKGFTPL 150

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 76.4 bits (189), Expect = 4e-16
 Identities = 35/164 (21%), Positives = 56/164 (34%), Gaps = 26/164 (15%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +    G T +H+ + +G  ETV                 +      PLH AA  G   V 
Sbjct: 108 LATTAGHTPLHIAAREGHVETVLALLEKEASQA-----CMTKKGFTPLHVAAKYGKVRVA 162

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDKEGN 124
             L+            NG T LH+AV  +  D  + L+    + +             G 
Sbjct: 163 ELLLERDAH-PNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS--------PAWNGY 213

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
           T LH+A      ++   L++   +       N  + +G T L L
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGS------ANAESVQGVTPLHL 251

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 74.8 bits (185), Expect = 1e-15
 Identities = 31/126 (24%), Positives = 50/126 (39%), Gaps = 17/126 (13%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
               S + PLH A+  G+  +++ L+              ET LH+A +   ++  + L+
Sbjct: 9   GGGESGLTPLHVASFMGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARAGHTEVAKYLL 67

Query: 105 DE-AK-NHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEG 162
              AK N         K K+  T LH A       +V+LL+  N+N       N     G
Sbjct: 68  QNKAKVNA--------KAKDDQTPLHCAARIGHTNMVKLLLENNAN------PNLATTAG 113

Query: 163 QTTLQL 168
            T L +
Sbjct: 114 HTPLHI 119

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 4e-09
 Identities = 17/91 (18%), Positives = 33/91 (36%), Gaps = 16/91 (17%)

Query: 78  EKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDKEGNTVLHLATLNKL 135
                +G T LH+A         + L+    + N          + +  T LH+A     
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV--------SNVKVETPLHMAARAGH 59

Query: 136 KQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            ++ + L++  +       +N   K+ QT L
Sbjct: 60  TEVAKYLLQNKAK------VNAKAKDDQTPL 84

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 24/137 (17%), Positives = 49/137 (35%), Gaps = 22/137 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
              + G T +H+ S  G+ + V+       ++N             PLH+AA  G++D++
Sbjct: 306 ATTRMGYTPLHVASHYGNIKLVKFLLQHQADVN-----AKTKLGYSPLHQAAQQGHTDIV 360

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV 126
             L+        +++S+G T L +A +       + L                DK   + 
Sbjct: 361 TLLLKNGAS-PNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSF---VLVSDKHRMSF 416

Query: 127 LHLATLNKLKQIVELLI 143
                       V+ ++
Sbjct: 417 PE---------TVDEIL 424

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 79.2 bits (196), Expect = 5e-18
 Identities = 35/169 (20%), Positives = 59/169 (34%), Gaps = 27/169 (15%)

Query: 16  GETTMHLLSTDGDAETVRIF----G-EINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
            E+ + L + + D + +       G E++     +        LH AAL  N +    L+
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVH-----QRGAMGETALHIAALYDNLEAAMVLM 57

Query: 71  S----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-------EAKNHRKEHLFTWK 119
                +  E +      G+TALH+AV     +   AL+         A      +     
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
              G   L  A     ++IV LLI   ++      I   +  G T L +
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLLIEHGAD------IRAQDSLGNTVLHI 160

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 72.3 bits (178), Expect = 2e-15
 Identities = 36/177 (20%), Positives = 62/177 (35%), Gaps = 26/177 (14%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           +   GET +H+ +   + E   +      E+  E            LH A ++ N +++R
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

Query: 68  ALVS------------ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
           AL++            +       L   GE  L  A      +    L++   + R    
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA--- 149

Query: 116 FTWKDKEGNTVLHLATLNKLKQIV----ELLIRENSNRRIMIRINTVNKEGQTTLQL 168
              +D  GNTVLH+  L   K        LL+  +    +       N +G T  +L
Sbjct: 150 ---QDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKL 203

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.8 bits (195), Expect = 6e-18
 Identities = 26/168 (15%), Positives = 59/168 (35%), Gaps = 25/168 (14%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            + +  +  +H  +  G+   +R        +N      +D +    L+ A   G+ D++
Sbjct: 68  EQAESIDNPLHEAAKRGNLSWLRECLDNRVGVN-----GLDKAGSTALYWACHGGHKDIV 122

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AK-NHRKEHLFTWKDKEGN 124
             L +     L +    G+TALH A  K  +D  + L+ + A+ +         ++ E  
Sbjct: 123 EMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL--------RNIEKK 174

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
               +AT      +++     ++           N E     +  +  
Sbjct: 175 LAFDMATNAACASLLKKKQGTDAV------RTLSNAEDYLDDEDSDLE 216

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 78.1 bits (193), Expect = 1e-17
 Identities = 32/165 (19%), Positives = 55/165 (33%), Gaps = 28/165 (16%)

Query: 6   PQLASIKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDG 61
           P    +K   G+  +       +  T        G+I       + + S     +    G
Sbjct: 4   PPPKPVKP--GQVKVFRALYTFEPRTPDELYIEEGDII-----YITDMSDTNWWKGTSKG 56

Query: 62  NSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
            + +I +        + +   + +  LH A K+         +D              DK
Sbjct: 57  RTGLIPSNY------VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG------LDK 104

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            G+T L+ A     K IVE+L  + +     I +N  NK G T L
Sbjct: 105 AGSTALYWACHGGHKDIVEMLFTQPN-----IELNQQNKLGDTAL 144

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 75.4 bits (186), Expect = 1e-16
 Identities = 33/161 (20%), Positives = 53/161 (32%), Gaps = 24/161 (14%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
                 +T     ++ G    +       +        S   PLH AA  GN   +R  +
Sbjct: 40  YITDMSDTNWWKGTSKGRTGLIPSNYVAEQ------AESIDNPLHEAAKRGNLSWLRECL 93

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA---KNHRKEHLFTWKDKEGNTVL 127
                 +  L   G TAL+ A      D  E L  +     N         ++K G+T L
Sbjct: 94  DNRVG-VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQ--------QNKLGDTAL 144

Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
           H A       IV+LL+ + +        +  N E +    +
Sbjct: 145 HAAAWKGYADIVQLLLAKGAR------TDLRNIEKKLAFDM 179

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 78.3 bits (194), Expect = 1e-17
 Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 18/160 (11%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           K+Q G   +H   +    E           +N +     D+S   P H A   GN +V++
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDD--YPDDSGWTPFHIACSVGNLEVVK 89

Query: 68  ALVSICPES-LEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV 126
           +L     +  L K+T+ G T LHLAV K   +  + L++   + R       KDK     
Sbjct: 90  SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI------KDKFNQIP 143

Query: 127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           LH A      +++ELL     +      +N  +K+G T L
Sbjct: 144 LHRAASVGSLKLIELLCGLGKS-----AVNWQDKQGWTPL 178

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 75.6 bits (187), Expect = 1e-16
 Identities = 29/161 (18%), Positives = 53/161 (32%), Gaps = 26/161 (16%)

Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            A ++N+  +    L S             +      + D    IPLH +      ++  
Sbjct: 8   QACMENEFFKVQELLHSKPSL---------LL-----QKDQDGRIPLHWSVSFQAHEITS 53

Query: 68  ALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT 125
            L+S        +    +G T  H+A      +  ++L D                +G T
Sbjct: 54  FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNK----ITNQGVT 109

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            LHLA   K  ++ + LI   ++      +   +K  Q  L
Sbjct: 110 CLHLAVGKKWFEVSQFLIENGAS------VRIKDKFNQIPL 144

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 72.9 bits (180), Expect = 9e-16
 Identities = 29/163 (17%), Positives = 53/163 (32%), Gaps = 22/163 (13%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF------GEINRELCLEVDNSSMIPLHRAALDGNSDV 65
            +  G T  H+  + G+ E V+         ++N     ++ N  +  LH A      +V
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN-----KITNQGVTCLHLAVGKKWFEV 122

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT 125
            + L+      +       +  LH A         E L    K+         +DK+G T
Sbjct: 123 SQFLIENGAS-VRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNW-----QDKQGWT 176

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            L  A          LL+ +          + V+ +G     +
Sbjct: 177 PLFHALAEGHGDAAVLLVEKYG-----AEYDLVDNKGAKAEDV 214

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 69.8 bits (172), Expect = 1e-14
 Identities = 29/139 (20%), Positives = 49/139 (35%), Gaps = 23/139 (16%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
              +G T +HL       E  +     G  +        D  + IPLHRAA  G+  +I 
Sbjct: 103 ITNQGVTCLHLAVGKKWFEVSQFLIENGASVR-----IKDKFNQIPLHRAASVGSLKLIE 157

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA---KNHRKEHLFTWKDKEGN 124
            L  +   ++      G T L  A+ +   DA   LV++     +          D +G 
Sbjct: 158 LLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDL--------VDNKGA 209

Query: 125 TVLHLATLNKLKQIVELLI 143
               +A      Q+ +  +
Sbjct: 210 KAEDVALNE---QVKKFFL 225

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 65.2 bits (160), Expect = 6e-13
 Identities = 23/115 (20%), Positives = 45/115 (39%), Gaps = 9/115 (7%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHR 111
           PLH+A ++     ++ L+   P  L +   +G   LH +V     +    L+ +    + 
Sbjct: 5   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 64

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            ++     D  G T  H+A      ++V+ L            +N +  +G T L
Sbjct: 65  DDY----PDDSGWTPFHIACSVGNLEVVKSLYDRPLK----PDLNKITNQGVTCL 111

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 14/90 (15%), Positives = 31/90 (34%), Gaps = 22/90 (24%)

Query: 84  GETALHLAVKKSRSDAFE-------ALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLK 136
               LH A  ++     +       +L+ +            KD++G   LH +   +  
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQ------------KDQDGRIPLHWSVSFQAH 49

Query: 137 QIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           +I   L+ +  N  + +  +  +  G T  
Sbjct: 50  EITSFLLSKMEN--VNLD-DYPDDSGWTPF 76

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 76.7 bits (190), Expect = 1e-17
 Identities = 36/179 (20%), Positives = 57/179 (31%), Gaps = 39/179 (21%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---GEINRELCLEVDNSSMIPLHRAALDGNSDVIRA 68
            N   +  +   +  GD ETV+       +N   C +++     PLH AA      V+  
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVN---CRDIEGRQSTPLHFAAGYNRVSVVEY 60

Query: 69  LVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTW 118
           L+     +           G   LH A      +  E L      V+             
Sbjct: 61  LLQHGADV-----HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNV------------ 103

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSA 177
            D    T LH A      +I +LL++  ++          N++G T L L      D  
Sbjct: 104 ADLWKFTPLHEAAAKGKYEICKLLLQHGAD------PTKKNRDGNTPLDLVKDGDTDIQ 156

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 78.2 bits (194), Expect = 1e-17
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 36/171 (21%)

Query: 9   ASIKNQR---GETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDG 61
           AS+ NQ    GET +HL +    ++  +       + N       DN    PLH A    
Sbjct: 15  ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSAD 69

Query: 62  NSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHL 115
              V + L+      L+    +G T L LA + +     E L      V+          
Sbjct: 70  AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------- 120

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
               D  G + LH A          +L++  +N       +  N   +T L
Sbjct: 121 ---VDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPL 162

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 26/143 (18%), Positives = 41/143 (28%), Gaps = 28/143 (19%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            +   G T + L +       +        ++N      VD+     LH AA   N D  
Sbjct: 87  ARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNVDAA 141

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKD 120
             L+        +  +  ET L LA ++   +  + L       D              D
Sbjct: 142 VVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANRDI------------TD 188

Query: 121 KEGNTVLHLATLNKLKQIVELLI 143
                   +A       IV LL 
Sbjct: 189 HMDRLPRDIAQERMHHDIVRLLD 211

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.1 bits (108), Expect = 5e-06
 Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 19/113 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
             +  G++ +H  +   + +   +    G   +       +N    PL  AA +G+ +  
Sbjct: 120 AVDDLGKSALHWAAAVNNVDAAVVLLKNGANKD-----MQNNREETPLFLAAREGSYETA 174

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEH 114
           + L+           +           +A ++   D    L +       + H
Sbjct: 175 KVLLDHFANR-----DITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQLH 222

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 79.6 bits (197), Expect = 2e-17
 Identities = 33/167 (19%), Positives = 63/167 (37%), Gaps = 23/167 (13%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            +    T + L         V        +         + S    LH+AA + +  ++ 
Sbjct: 162 MDCDENTPLMLAVLARRRRLVAYLMKAGADPT-----IYNKSERSALHQAAANRDFGMMV 216

Query: 68  ALVSICPE--SLEKLTSNGETALHLAVKKSRSDAFEA---LVDE-AK-NHRKEHLFTWKD 120
            +++       +E+L  NG TAL +       D   +   LV++ AK ++        + 
Sbjct: 217 YMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEK 276

Query: 121 KEGNTVLHLATLNKLKQIVELLIREN-SNRRIMIRINTVNKEGQTTL 166
            +G T LH A       IV+ L+ E  SN       +  +++G+T +
Sbjct: 277 YKGRTALHYAAQVSNMPIVKYLVGEKGSN------KDKQDEDGKTPI 317

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 73.8 bits (182), Expect = 2e-15
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 39/178 (21%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF-------GEINRELCLEVDNSSMIPLHRAALDGNS 63
           I N+   + +H  + + D   +          G+I      E+D + M  L   A +   
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIE-----ELDRNGMTALMIVAHNEGR 248

Query: 64  DVIRA---LVS-------ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA---KNH 110
           D + +   LV              +     G TALH A + S     + LV E    K+ 
Sbjct: 249 DQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDK 308

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                   +D++G T + LA      ++V  LI++ ++      +  V+    T  QL
Sbjct: 309 --------QDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------VEAVDATDHTARQL 352

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 71.9 bits (177), Expect = 8e-15
 Identities = 26/172 (15%), Positives = 55/172 (31%), Gaps = 26/172 (15%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEV-------DNSSMIPLHRAALDGNSD 64
             +   T +H ++++  AE          + C+         D     PL  A L     
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA-----KNHRKEHLFTWK 119
           ++  L+    +       +  +ALH A           +++                   
Sbjct: 181 LVAYLMKAGAD-PTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE--------L 231

Query: 120 DKEGNTVLHLATLNKLK---QIVELLIRE--NSNRRIMIRINTVNKEGQTTL 166
           D+ G T L +   N+ +      +LL+ +    +     R ++   +G+T L
Sbjct: 232 DRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTAL 283

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 70.4 bits (173), Expect = 3e-14
 Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 16/149 (10%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF------G-EINRELCL---EVDNSSMIPLHRAALD 60
             ++ G T + +++ +   + V         G +++ +               LH AA  
Sbjct: 230 ELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQV 289

Query: 61  GNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD 120
            N  +++ LV     + +K   +G+T + LA ++ R +    L+ +  +          D
Sbjct: 290 SNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGAS------VEAVD 343

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNR 149
              +T   LA  N    IV++  R    R
Sbjct: 344 ATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 68.4 bits (168), Expect = 1e-13
 Identities = 29/155 (18%), Positives = 49/155 (31%), Gaps = 21/155 (13%)

Query: 16  GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE 75
            + ++   S DG  +  R           E+ + S+ P  +   +GN  +     +    
Sbjct: 37  SQHSLLEASYDGYIKRQR----------NELQHYSLYPNPQGYGNGNDFLGDFNHTNLQI 86

Query: 76  SLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKL 135
             E         LH     S     E +  E+ N           +   TVLH    N  
Sbjct: 87  PTEP-EPESPIKLHTEAAGSY-AITEPITRESVNIID-------PRHNRTVLHWIASNSS 137

Query: 136 KQIVELLIRENSNRRIMI--RINTVNKEGQTTLQL 168
            +  E LI   +   I     +N ++ +  T L L
Sbjct: 138 AEKSEDLIVHEAKECIAAGADVNAMDCDENTPLML 172

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 78.0 bits (193), Expect = 2e-17
 Identities = 36/168 (21%), Positives = 61/168 (36%), Gaps = 29/168 (17%)

Query: 12  KNQRGETTMHL----LSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNS 63
             + G++ +HL           E +R        +N       +N    PLH A +    
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLN-----FQNNLQQTPLHLAVITNQP 58

Query: 64  DVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWK 119
           ++  AL+           E     G T LHLA ++    +   L           +    
Sbjct: 59  EIAEALLGAGCDP-----ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKAT 113

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV-NKEGQTTL 166
           +  G+T LHLA+++    IVELL+   ++      +N      G+T L
Sbjct: 114 NYNGHTCLHLASIHGYLGIVELLVSLGAD------VNAQEPCNGRTAL 155

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 78.0 bits (193), Expect = 2e-17
 Identities = 39/172 (22%), Positives = 55/172 (31%), Gaps = 35/172 (20%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            +N   +T +HL       E        G +         D     PLH A   G    +
Sbjct: 40  FQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE-----LRDFRGNTPLHLACEQGCLASV 94

Query: 67  RALVS-----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLF 116
             L            L+    NG T LHLA         E LV       A+        
Sbjct: 95  GVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQE------- 147

Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                 G T LHLA   +   +V LL++  ++      +N V  +G +  QL
Sbjct: 148 ---PCNGRTALHLAVDLQNPDLVSLLLKCGAD------VNRVTYQGYSPYQL 190

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 71.0 bits (175), Expect = 4e-15
 Identities = 32/167 (19%), Positives = 55/167 (32%), Gaps = 29/167 (17%)

Query: 11  IKNQRGETTMHLLSTDGDAETVR--IFGEINRELCLEV---DNSSMIPLHRAALDGNSDV 65
           +++ RG T +HL    G   +V           L   +   + +    LH A++ G   +
Sbjct: 73  LRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGI 132

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWK 119
           +  LVS+  +   +   NG TALHLAV     D    L      V+              
Sbjct: 133 VELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR------------V 180

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             +G +   L       +I + L +             +  E +   
Sbjct: 181 TYQGYSPYQLTWGRPSTRIQQQLGQLTLE------NLQMLPESEDEE 221

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 58.7 bits (143), Expect = 1e-10
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 9/101 (8%)

Query: 78  EKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQ 137
           ++LT +G++ LHLA+          ++ + K         +++    T LHLA +    +
Sbjct: 2   QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPE 59

Query: 138 IVELLIRENSNRRIMIRINTVNKEGQTTLQL-CNANSQDSA 177
           I E L+    +          +  G T L L C      S 
Sbjct: 60  IAEALLGAGCD------PELRDFRGNTPLHLACEQGCLASV 94

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 57.9 bits (141), Expect = 2e-10
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSS-MIPLHRAALDGNSDVI 66
            N  G T +HL S  G    V +    G ++N       +  +    LH A    N D++
Sbjct: 113 TNYNGHTCLHLASIHGYLGIVELLVSLGADVN-----AQEPCNGRTALHLAVDLQNPDLV 167

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNT 125
             L+    + + ++T  G +   L   +  +   + L     +N +          E   
Sbjct: 168 SLLLKCGAD-VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQM-------LPESED 219

Query: 126 VLHLATLNKLKQIVE 140
                T ++  +  E
Sbjct: 220 EESYDTESEFTEFTE 234

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 77.5 bits (192), Expect = 3e-17
 Identities = 26/171 (15%), Positives = 55/171 (32%), Gaps = 35/171 (20%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRI--------FGEINRELCLEVDNSSMIPLHRAALDGN 62
             ++ G+T  HL         +R           ++        +   +  LH A     
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLE-----ARNYDGLTALHVAVNTEC 128

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFT 117
            + ++ L+    +       +G + L  AV+ +     + L+       A+         
Sbjct: 129 QETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQ--------- 179

Query: 118 WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                G++ LH A+   L  +V  L+R  ++       +  N    T L +
Sbjct: 180 --MYSGSSALHSASGRGLLPLVRTLVRSGAD------SSLKNCHNDTPLMV 222

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 75.6 bits (187), Expect = 1e-16
 Identities = 30/130 (23%), Positives = 48/130 (36%), Gaps = 21/130 (16%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPES---LEKLTSNGETALHLAVKKSRSDAFE 101
             D     PLH A + GN   +  LV++  +    L+   +  +T LHLAV  +      
Sbjct: 4   RADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVR 63

Query: 102 ALVD-----EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRIN 156
            LV       A            D+ G T  HLA  ++    +  L+   +     + + 
Sbjct: 64  LLVTAGASPMAL-----------DRHGQTAAHLACEHRSPTCLRALLDSAAPGT--LDLE 110

Query: 157 TVNKEGQTTL 166
             N +G T L
Sbjct: 111 ARNYDGLTAL 120

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 72.9 bits (180), Expect = 1e-15
 Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 29/171 (16%)

Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCL-----EVDNSSMIPLHRAALDGN 62
           +A+  ++ G+T +H+    G+   V     +N            +N    PLH A +   
Sbjct: 1   MATRADEDGDTPLHIAVVQGNLPAVHRL--VNLFQQGGRELDIYNNLRQTPLHLAVITTL 58

Query: 63  SDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFT- 117
             V+R LV+            L  +G+TA HLA +        AL+D             
Sbjct: 59  PSVVRLLVTAGASP-----MALDRHGQTAAHLACEHRSPTCLRALLD----SAAPGTLDL 109

Query: 118 -WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KEGQTTL 166
             ++ +G T LH+A   + ++ V+LL+   ++      I+ V+ K G++ L
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGAD------IDAVDIKSGRSPL 154

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 64.8 bits (159), Expect = 1e-12
 Identities = 26/149 (17%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVD-NSSMIPLHRAALDGNSDV 65
            +N  G T +H+       ETV++      +I+      VD  S   PL  A  + +  +
Sbjct: 111 ARNYDGLTALHVAVNTECQETVQLLLERGADID-----AVDIKSGRSPLIHAVENNSLSM 165

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWK 119
           ++ L+      +     +G +ALH A  +        L                     K
Sbjct: 166 VQLLLQHGAN-VNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSL------------K 212

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSN 148
           +   +T L +A   ++  I+       ++
Sbjct: 213 NCHNDTPLMVARSRRVIDILRGKATRPAS 241

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 75.1 bits (186), Expect = 5e-17
 Identities = 30/160 (18%), Positives = 56/160 (35%), Gaps = 26/160 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
             ++RG T +   S  G+ ETVR     G + +      +       L  A+  G +D++
Sbjct: 31  KPDERGFTPLIWASAFGEIETVRFLLEWGADPH-----ILAKERESALSLASTGGYTDIV 85

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGN 124
             L+    + +     NG T L  AV+ +     EAL+   A            +   G 
Sbjct: 86  GLLLERDVD-INIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTT--------EADSGY 136

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
           T + LA     +++ +++            +   N     
Sbjct: 137 TPMDLAVALGYRKVQQVIENHILK------LFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.8 bits (167), Expect = 2e-14
 Identities = 26/115 (22%), Positives = 41/115 (35%), Gaps = 14/115 (12%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHR 111
            +H+ A  G  D ++  +      + K    G T L  A      +    L++  A  H 
Sbjct: 5   SIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI 64

Query: 112 KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                    KE  + L LA+      IV LL+  + +      IN  +  G T L
Sbjct: 65  L-------AKERESALSLASTGGYTDIVGLLLERDVD------INIYDWNGGTPL 106

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 84  GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
              ++H    +   D  +  + +  N   +      D+ G T L  A+     + V  L+
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNK-----PDERGFTPLIWASAFGEIETVRFLL 56

Query: 144 RENSNRRIMIRINTVNKEGQTTL 166
              ++       + + KE ++ L
Sbjct: 57  EWGAD------PHILAKERESAL 73

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.5 bits (187), Expect = 5e-17
 Identities = 27/126 (21%), Positives = 50/126 (39%), Gaps = 24/126 (19%)

Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL--- 103
               M  +     +GN+  +R  +      L +   +G + LH A ++ RS   E L   
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMR 61

Query: 104 ---VDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
              ++              ++  +T LHLA  +  + IV+ L++  ++      IN VN+
Sbjct: 62  GARINV------------MNRGDDTPLHLAASHGHRDIVQKLLQYKAD------INAVNE 103

Query: 161 EGQTTL 166
            G   L
Sbjct: 104 HGNVPL 109

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 75.2 bits (186), Expect = 5e-17
 Identities = 34/172 (19%), Positives = 60/172 (34%), Gaps = 43/172 (25%)

Query: 16  GETTMHLLSTDGDAETVRIF-----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
               +     +G+A  VR++      ++N     + D+    PLH A  +G S V+  L+
Sbjct: 5   FMDDIFTQCREGNAVAVRLWLDNTENDLN-----QGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 71  S----ICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKD 120
                I       +    +T LHLA      D  + L      ++              +
Sbjct: 60  MRGARI-----NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINA------------VN 102

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
           + GN  LH A      Q+ E L+   +       ++  NK G+  +    A 
Sbjct: 103 EHGNVPLHYACFWGQDQVAEDLVANGAL------VSICNKYGEMPVDKAKAP 148

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 66.3 bits (163), Expect = 9e-14
 Identities = 26/140 (18%), Positives = 46/140 (32%), Gaps = 24/140 (17%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            +  G + +H    +G +  V +       IN      ++     PLH AA  G+ D+++
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRGARIN-----VMNRGDDTPLHLAASHGHRDIVQ 89

Query: 68  ALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG 123
            L+     I       +  +G   LH A    +    E LV               +K G
Sbjct: 90  KLLQYKADI-----NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSI------CNKYG 138

Query: 124 NTVLHLATLNKLKQIVELLI 143
              +  A     + + E   
Sbjct: 139 EMPVDKAKAPLRELLRERAE 158

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 47.0 bits (113), Expect = 8e-07
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 18/103 (17%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           + N+  +T +HL ++ G  + V+       +IN      V+    +PLH A   G   V 
Sbjct: 67  VMNRGDDTPLHLAASHGHRDIVQKLLQYKADIN-----AVNEHGNVPLHYACFWGQDQVA 121

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
             LV+    +           GE  +  A    R    E    
Sbjct: 122 EDLVANGALV-----SICNKYGEMPVDKAKAPLRELLRERAEK 159

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.7 bits (190), Expect = 5e-17
 Identities = 37/171 (21%), Positives = 58/171 (33%), Gaps = 36/171 (21%)

Query: 9   ASIKNQR---GETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDG 61
           AS+ NQ    GET +HL +    ++  +       + N       DN    PLH A    
Sbjct: 47  ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADAN-----IQDNMGRTPLHAAVSAD 101

Query: 62  NSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHL 115
              V + L+      L+    +G T L LA + +     E L      V+          
Sbjct: 102 AQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNA--------- 152

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
               D  G + LH A          +L++  +N       +  N   +T L
Sbjct: 153 ---VDDLGKSALHWAAAVNNVDAAVVLLKNGAN------KDMQNNREETPL 194

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 76.0 bits (188), Expect = 1e-16
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 35/169 (20%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF-----GEINRELCLEVDNSSMIPLHRAALDGNSDV 65
           I++  G T +H   +       +I       +++        +    PL  AA      +
Sbjct: 85  IQDNMGRTPLHAAVSADAQGVFQILIRNRATDLD-----ARMHDGTTPLILAARLAVEGM 139

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWK 119
           +  L++   + +  +   G++ALH A   +  DA   L       D             +
Sbjct: 140 LEDLINSHAD-VNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM------------Q 186

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
           +    T L LA      +  ++L+   +N       +  +   +    +
Sbjct: 187 NNREETPLFLAAREGSYETAKVLLDHFAN------RDITDHMDRLPRDI 229

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.1 bits (178), Expect = 3e-15
 Identities = 27/144 (18%), Positives = 47/144 (32%), Gaps = 20/144 (13%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            +   G T + L +       +        ++N      VD+     LH AA   N D  
Sbjct: 119 ARMHDGTTPLILAARLAVEGMLEDLINSHADVN-----AVDDLGKSALHWAAAVNNVDAA 173

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDKEGN 124
             L+        +  +  ET L LA ++   +  + L+D    ++          D    
Sbjct: 174 VVLLKNGANKDMQ-NNREETPLFLAAREGSYETAKVLLDHFANRDI--------TDHMDR 224

Query: 125 TVLHLATLNKLKQIVELLIRENSN 148
               +A       IV LL  E+ +
Sbjct: 225 LPRDIAQERMHHDIVRLLDLEHHH 248

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 64.0 bits (157), Expect = 2e-12
 Identities = 32/141 (22%), Positives = 45/141 (31%), Gaps = 36/141 (25%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSI--CPESLEKLTS-----------NGETALHLA 91
                   PL  A+  G              P  +                 GETALHLA
Sbjct: 5   VRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLA 64

Query: 92  VKKSRSDAFEAL------VDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE 145
            + SRSDA + L       +             +D  G T LH A     + + ++LI  
Sbjct: 65  ARYSRSDAAKRLLEASADANI------------QDNMGRTPLHAAVSADAQGVFQILI-- 110

Query: 146 NSNRRIMIRINTVNKEGQTTL 166
             NR     ++    +G T L
Sbjct: 111 -RNRATD--LDARMHDGTTPL 128

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 77.2 bits (191), Expect = 6e-17
 Identities = 24/162 (14%), Positives = 51/162 (31%), Gaps = 22/162 (13%)

Query: 9   ASIKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSD 64
           A       E  +H  +T  D + V+I      + +     + D+     L+ A   GN  
Sbjct: 55  ALKNLLENEFPLHQAATLEDTKIVKILLFSGLDDS-----QFDDKGNTALYYAVDSGNMQ 109

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGN 124
            ++  V      +    +  +T+ + AV  +        + E  +               
Sbjct: 110 TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFD-------LAILL 162

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           + +H+   N    ++ LL+   ++       NT N       
Sbjct: 163 SCIHITIKNGHVDMMILLLDYMTS------TNTNNSLLFIPD 198

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 23/123 (18%), Positives = 41/123 (33%), Gaps = 19/123 (15%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
           + D       + A  D N  ++  L++             E  LH A     +   + L+
Sbjct: 26  KADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL---ENEFPLHQAATLEDTKIVKILL 82

Query: 105 DE--AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEG 162
                 +          D +GNT L+ A  +   Q V+L +++N        +    K G
Sbjct: 83  FSGLDDSQ--------FDDKGNTALYYAVDSGNMQTVKLFVKKNWR------LMFYGKTG 128

Query: 163 QTT 165
             T
Sbjct: 129 WKT 131

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 20/182 (10%), Positives = 54/182 (29%), Gaps = 39/182 (21%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNS-SMIPLHRAALDGNSDV 65
             + +G T ++     G+ +TV++F      +          +      + A +  +  +
Sbjct: 90  QFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLM-----FYGKTGWKTSFYHAVMLNDVSI 144

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE------------------- 106
           +   +S  P + +   +   + +H+ +K    D    L+D                    
Sbjct: 145 VSYFLSEIPSTFDL--AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLA 202

Query: 107 AKNHRKE--HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
             N   E        D    +      L    +I +++I ++          + +     
Sbjct: 203 IDNKDIEMLQALFKYDINIYSANLENVLLDDAEIAKMIIEKHVE------YKSDSYTKDL 256

Query: 165 TL 166
            +
Sbjct: 257 DI 258

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 45.2 bits (108), Expect = 7e-06
 Identities = 19/155 (12%), Positives = 39/155 (25%), Gaps = 33/155 (21%)

Query: 11  IKNQRGETT-MHLLSTDGDAETVRIF---GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
              + G  T  +      D   V  F                  +  +H    +G+ D++
Sbjct: 123 FYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----FDLAILLSCIHITIKNGHVDMM 177

Query: 67  RALVSICPESLEKLTSNGET-ALHLAVKKSRSDAFEALVD-----EAKNH---RKEHL-- 115
             L+           S      + LA+     +  +AL        + N      +    
Sbjct: 178 ILLLDYMTS-TNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANLENVLLDDAEI 236

Query: 116 ----------FTWKDKEGNTVLHLATLNKLKQIVE 140
                     +       +  +     NKL +I+ 
Sbjct: 237 AKMIIEKHVEYKSDSYTKDLDIVKN--NKLDEIIS 269

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 75.5 bits (187), Expect = 6e-17
 Identities = 36/162 (22%), Positives = 57/162 (35%), Gaps = 30/162 (18%)

Query: 10  SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
           S  ++ GE    +       + +      N       D+ +  PL  A + G  + I  L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFL--RN-----YRDSYNRTPLMVACMLGMENAIDKL 54

Query: 70  VSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWKDKEGN 124
           V    +  +K    G TAL  AVK +R    E L+        K           D  G 
Sbjct: 55  VENFDKLEDK-DIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTK-----------DFSGK 102

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           T L  + +    ++   L+   +N      +N  N EG+T L
Sbjct: 103 TPLMWSIIFGYSEMSYFLLEHGAN------VNDRNLEGETPL 138

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 73.2 bits (181), Expect = 4e-16
 Identities = 24/168 (14%), Positives = 55/168 (32%), Gaps = 32/168 (19%)

Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNS 63
           L + ++    T + +    G    +        ++      + D      L  A  +   
Sbjct: 27  LRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLE-----DKDIEGSTALIWAVKNNRL 81

Query: 64  DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTW 118
            +   L+S     +     +G+T L  ++    S+    L++                  
Sbjct: 82  GIAEKLLSKGSN-VNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND----------- 129

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           ++ EG T L +A+     +IV+ L+   ++      I+  +  G T  
Sbjct: 130 RNLEGETPLIVASKYGRSEIVKKLLELGAD------ISARDLTGLTAE 171

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 67.0 bits (165), Expect = 7e-14
 Identities = 28/149 (18%), Positives = 51/149 (34%), Gaps = 29/149 (19%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            K+  G T +     +            G  +N       D S   PL  + + G S++ 
Sbjct: 63  DKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVN-----TKDFSGKTPLMWSIIFGYSEMS 117

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWKDK 121
             L+      +      GET L +A K  RS+  + L++      A+           D 
Sbjct: 118 YFLLEHGAN-VNDRNLEGETPLIVASKYGRSEIVKKLLELGADISAR-----------DL 165

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRR 150
            G T    A +   ++++++       RR
Sbjct: 166 TGLTAEASARIFGRQEVIKIFT---EVRR 191

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 73.2 bits (181), Expect = 1e-16
 Identities = 32/143 (22%), Positives = 54/143 (37%), Gaps = 20/143 (13%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            N RGET +H+ S  GD  +V      G + N       D++   PLH A   G+  V+ 
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNGSDPN-----VKDHAGWTPLHEACNHGHLKVVE 60

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNT 125
            L+      +       ++ LH A K    D  + L+   A +N          +  G  
Sbjct: 61  LLLQHKAL-VNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA--------VNIFGLR 111

Query: 126 VLHLATLNKLKQIVELLIRENSN 148
            +       +K ++ L  +  S+
Sbjct: 112 PVDYTDDESMKSLLLLPEKNESS 134

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 64.0 bits (157), Expect = 3e-13
 Identities = 25/126 (19%), Positives = 41/126 (32%), Gaps = 25/126 (19%)

Query: 47  DNSSMIPLHRAALDGNSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEA 102
           ++     LH A++ G+   +  L+                 G T LH A         E 
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDP-----NVKDHAGWTPLHEACNHGHLKVVEL 61

Query: 103 LVDE--AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK 160
           L+      N            + ++ LH A  N    IV+LL+   ++       N VN 
Sbjct: 62  LLQHKALVNT--------TGYQNDSPLHDAAKNGHVDIVKLLLSYGAS------RNAVNI 107

Query: 161 EGQTTL 166
            G   +
Sbjct: 108 FGLRPV 113

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 42.0 bits (100), Expect = 2e-05
 Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +K+  G T +H     G  + V +       +N          +  PLH AA +G+ D++
Sbjct: 38  VKDHAGWTPLHEACNHGHLKVVELLLQHKALVN-----TTGYQNDSPLHDAAKNGHVDIV 92

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNH 110
           + L+S            G   +     +S             + 
Sbjct: 93  KLLLSYGASRNAV-NIFGLRPVDYTDDESMKSLLLLPEKNESSS 135

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 74.0 bits (183), Expect = 2e-16
 Identities = 29/183 (15%), Positives = 61/183 (33%), Gaps = 35/183 (19%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +K       +   +     +   I      +++     EVD     PL+ A  + + ++ 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTTYQVD-----EVDTEGNTPLNIAVHNNDIEIA 55

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE 122
           +AL+     I         S  ++    A  + R++    ++  A     +      ++ 
Sbjct: 56  KALIDRGADI-----NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNK-----HNRY 105

Query: 123 GNTVLHLATLNKLKQIVELLI---RENSNRRIMIRINTVNKEGQTTLQL-CNANSQDSAF 178
           G   L  A        V+LL+   RE+        I+  N  G T L         +  +
Sbjct: 106 GGNALIPAAEKGHIDNVKLLLEDGRED--------IDFQNDFGYTALIEAVGLREGNQLY 157

Query: 179 KEI 181
           ++I
Sbjct: 158 QDI 160

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 67.5 bits (166), Expect = 5e-14
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 25/145 (17%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF-----GEINRELCLEVDNSSMIPLHRAALDGNSDV 65
           ++N   ++        G  E +         ++N     + +      L  AA  G+ D 
Sbjct: 67  LQNSISDSPYLYAGAQGRTEILAYMLKHATPDLN-----KHNRYGGNALIPAAEKGHIDN 121

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRS-----DAFEALVDE--AKNHRKEHLFTW 118
           ++ L+    E ++     G TAL  AV          D  + L++    ++         
Sbjct: 122 VKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSI-------- 173

Query: 119 KDKEGNTVLHLATLNKLKQIVELLI 143
           KD  G T +  A      +I ++L 
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKILA 198

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 72.8 bits (180), Expect = 3e-16
 Identities = 35/163 (21%), Positives = 58/163 (35%), Gaps = 35/163 (21%)

Query: 16  GETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
               +   +  G  + VRI                D     PLH AA  G+      L+ 
Sbjct: 2   LGKKLLEAARAGQDDEVRILMANGAPFTT------DWLGTSPLHLAAQYGHFSTTEVLLR 55

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKDKEGNT 125
                  + T    T LH+A  +  ++  E L      V+             KD    T
Sbjct: 56  AGVSRDAR-TKVDRTPLHMAASEGHANIVEVLLKHGADVNA------------KDMLKMT 102

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            LH AT +  +++VELLI+  ++      ++T +K  +T   +
Sbjct: 103 ALHWATEHNHQEVVELLIKYGAD------VHTQSKFCKTAFDI 139

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 64.7 bits (159), Expect = 2e-13
 Identities = 26/141 (18%), Positives = 49/141 (34%), Gaps = 28/141 (19%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            +  G + +HL +  G   T  +        +             PLH AA +G+++++ 
Sbjct: 30  TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRD-----ARTKVDRTPLHMAASEGHANIVE 84

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKDK 121
            L+    +   K      TALH A + +  +  E L      V              + K
Sbjct: 85  VLLKHGADVNAK-DMLKMTALHWATEHNHQEVVELLIKYGADVHT------------QSK 131

Query: 122 EGNTVLHLATLNKLKQIVELL 142
              T   ++  N  + + E+L
Sbjct: 132 FCKTAFDISIDNGNEDLAEIL 152

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.5 bits (130), Expect = 3e-09
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 15/85 (17%)

Query: 83  NGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVEL 141
           +    L  A +  + D    L+   A            D  G + LHLA         E+
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFT--------TDWLGTSPLHLAAQYGHFSTTEV 52

Query: 142 LIRENSNRRIMIRINTVNKEGQTTL 166
           L+R   +       +   K  +T L
Sbjct: 53  LLRAGVS------RDARTKVDRTPL 71

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 72.8 bits (180), Expect = 3e-16
 Identities = 32/162 (19%), Positives = 52/162 (32%), Gaps = 34/162 (20%)

Query: 15  RGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
               ++H L+  G+   +         IN       D     PL  AA  G   V+  L+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVIN-----HTDEEGFTPLMWAAAHGQIAVVEFLL 56

Query: 71  S----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGN 124
                      + L    E+AL LA  K  +D  + L+D     N          D  G 
Sbjct: 57  QNGADP-----QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNE--------YDWNGG 103

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           T L  A      + V++L+   ++             G  ++
Sbjct: 104 TPLLYAVHGNHVKCVKMLLESGAD------PTIETDSGYNSM 139

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 66.6 bits (164), Expect = 6e-14
 Identities = 23/157 (14%), Positives = 49/157 (31%), Gaps = 26/157 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
             ++ G T +   +  G    V      G +        +       L  A   G +D++
Sbjct: 31  HTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQ-----LLGKGRESALSLACSKGYTDIV 85

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGN 124
           + L+    + + +   NG T L  AV  +     + L++  A            +   G 
Sbjct: 86  KMLLDCGVD-VNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTI--------ETDSGY 136

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE 161
             + LA     + + +++            +    KE
Sbjct: 137 NSMDLAVALGYRSVQQVIESHLLK------LLQNIKE 167

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 73.8 bits (182), Expect = 5e-16
 Identities = 27/177 (15%), Positives = 55/177 (31%), Gaps = 30/177 (16%)

Query: 9   ASIK-NQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNS 63
             +K N      +   S +G+ + V+       + +       ++  +  LH A   G++
Sbjct: 29  MRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDDPS-----LPNDEGITALHNAVCAGHT 83

Query: 64  DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTW 118
           ++++ LV      +    S+G T LH A   +     + LV+      A  +        
Sbjct: 84  EIVKFLVQFGVN-VNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY-------- 134

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD 175
            D +              Q  + L            +  +NK     L      + D
Sbjct: 135 SDMQTAADKCEEMEEGYTQCSQFLYGVQEK------MGIMNKGVIYALWDYEPQNDD 185

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 71.9 bits (177), Expect = 2e-15
 Identities = 28/169 (16%), Positives = 59/169 (34%), Gaps = 22/169 (13%)

Query: 16  GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE 75
           G+ ++         +T      I   + ++ +   +  L  ++L+G  D+++ ++    +
Sbjct: 5   GQVSLPPGKRTNLRKTGSER--IAHGMRVKFNPLPLALLLDSSLEGEFDLVQRIIYEVDD 62

Query: 76  SLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNTVLHLATLN 133
                   G TALH AV    ++  + LV      N          D +G T LH A   
Sbjct: 63  -PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA--------ADSDGWTPLHCAASC 113

Query: 134 KLKQIVELLIRENSNRRIMIRINTVN-KEGQTTLQLCNANSQDSAFKEI 181
              Q+ + L+   +       +  +   + QT    C    +     + 
Sbjct: 114 NNVQVCKFLVESGAA------VFAMTYSDMQTAADKCEEMEEGY--TQC 154

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 65.3 bits (160), Expect = 6e-13
 Identities = 19/122 (15%), Positives = 38/122 (31%), Gaps = 18/122 (14%)

Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
           + +  + L               ++       K        L  +  +   D  + ++ E
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRV--KFNPLPLALLLDSSLEGEFDLVQRIIYE 59

Query: 107 A--KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
               +          + EG T LH A      +IV+ L++   N      +N  + +G T
Sbjct: 60  VDDPSL--------PNDEGITALHNAVCAGHTEIVKFLVQFGVN------VNAADSDGWT 105

Query: 165 TL 166
            L
Sbjct: 106 PL 107

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 32/171 (18%), Positives = 53/171 (30%), Gaps = 24/171 (14%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRI---FG-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           + N  G T +H     G  E V+    FG  +N       D+    PLH AA   N  V 
Sbjct: 65  LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVN-----AADSDGWTPLHCAASCNNVQVC 119

Query: 67  RALVSICPESLEKLTSNGETA--LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGN 124
           + LV           S+ +TA      +++  +   + L    +           +K   
Sbjct: 120 KFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGI------MNKGVI 173

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD 175
             L            EL ++E       + I     E +        N ++
Sbjct: 174 YALWDYEPQ---NDDELPMKEGDC----MTIIHREDEDEIEWWWARLNDKE 217

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 74.4 bits (184), Expect = 6e-16
 Identities = 31/179 (17%), Positives = 61/179 (34%), Gaps = 21/179 (11%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           + + G T +H        + V +      +           +   P   AA+ G+  +++
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELLLRHGADPV-----LRKKNGATPFLLAAIAGSVKLLK 89

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWKDKE 122
             +S   + + +    G TA   A    +  A + L         +   KE       K 
Sbjct: 90  LFLSKGAD-VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER-LRKG 147

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEI 181
           G T L  A      +++++L+ E         +N  +  G+  L     +S DS  + I
Sbjct: 148 GATALMDAAEKGHVEVLKILLDEMG-----ADVNACDNMGRNALIHALLSSDDSDVEAI 201

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 70.6 bits (174), Expect = 1e-14
 Identities = 33/174 (18%), Positives = 59/174 (33%), Gaps = 30/174 (17%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---------GEINRELCLEVDNSSMIPLHRAALDG 61
             +  G T     +  G  + ++               +E    +       L  AA  G
Sbjct: 100 ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKG 159

Query: 62  NSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTW--- 118
           + +V++ L+      +    + G  AL  A+  S     EA+           L      
Sbjct: 160 HVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAIT--------HLLLDHGAD 211

Query: 119 ---KDKEGNTVLHLATLNKLKQIVELLI-RENSNRRIMIRINTVNKEGQTTLQL 168
              + + G T L LA   K   +V+ L+ +E+        IN  + +G+T L L
Sbjct: 212 VNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIE------INDTDSDGKTALLL 259

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 68.7 bits (169), Expect = 7e-14
 Identities = 25/116 (21%), Positives = 47/116 (40%), Gaps = 16/116 (13%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNH 110
            L +A  + + D+++ L+        +    G T LH AV+ SR D  E L+   A    
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                   + K G T   LA +    ++++L + + ++      +N  +  G T  
Sbjct: 68  --------RKKNGATPFLLAAIAGSVKLLKLFLSKGAD------VNECDFYGFTAF 109

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 66.0 bits (162), Expect = 6e-13
 Identities = 27/166 (16%), Positives = 48/166 (28%), Gaps = 23/166 (13%)

Query: 13  NQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRA 68
                  +     + D + V+        +N     + +     PLH A      D++  
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVN----FQEEEGGWTPLHNAVQMSREDIVEL 57

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNTV 126
           L+    +       NG T   LA         +  + + A  N          D  G T 
Sbjct: 58  LLRHGAD-PVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNE--------CDFYGFTA 108

Query: 127 LHLATLNKLKQIVELLIRE----NSNRRIMIRINTVNKEGQTTLQL 168
              A +    + ++ L +     N  R+       + K G T L  
Sbjct: 109 FMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 64.0 bits (157), Expect = 3e-12
 Identities = 36/147 (24%), Positives = 54/147 (36%), Gaps = 32/147 (21%)

Query: 12  KNQRGETTMHLLSTDGDAETVRI----FG-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
             + G T +   +  G  E ++I     G ++N       DN     L  A L  +   +
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVN-----ACDNMGRNALIHALLSSDDSDV 198

Query: 67  RALVSICPESL-------EKLTSNGETALHLAVKKSRSDAFEALVDEA---KNHRKEHLF 116
            A+       L             G+T L LAV+K      + L+++     N       
Sbjct: 199 EAIT----HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND------ 248

Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLI 143
              D +G T L LA   KLK+I ELL 
Sbjct: 249 --TDSDGKTALLLAVELKLKKIAELLC 273

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 45.9 bits (110), Expect = 4e-06
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 13/103 (12%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGE--------INRELCLEVDNSSMIPLHRAALDGN 62
             +  G   +       D   V             +N             PL  A    +
Sbjct: 177 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVN-----VRGERGKTPLILAVEKKH 231

Query: 63  SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
             +++ L+      +    S+G+TAL LAV+       E L  
Sbjct: 232 LGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 74.1 bits (183), Expect = 6e-16
 Identities = 25/163 (15%), Positives = 45/163 (27%), Gaps = 30/163 (18%)

Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           + S  N   E                    +        +     PLH A +  +++++R
Sbjct: 130 VDSQPNPENEEEPRDEDWRLQ---------LE-----AENYDGHTPLHVAVIHKDAEMVR 175

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDKEGNT 125
            L     +  +   + G T LHLAV+   +   E L+                +   G T
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA--------RMYGGRT 227

Query: 126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            L  A L     +  LL    +             +  +    
Sbjct: 228 PLGSALLRPNPILARLLRAHGAP------EPEDGGDKLSPCSS 264

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 67.6 bits (166), Expect = 1e-13
 Identities = 24/172 (13%), Positives = 48/172 (27%), Gaps = 27/172 (15%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF-------GEINRELCLEVDNSSMIPLHRAALDGNSD 64
             + G+T +HL         +            ++       ++     LH AA+ G + 
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLD-----LQNDLGQTALHLAAILGEAS 59

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-------EAKNHRKEHLFT 117
            +  L +     +      G TALHLA +         L+        +A +        
Sbjct: 60  TVEKLYAAGAG-VLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQD 118

Query: 118 WKDKEGNTVLHL-ATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                 +    + +  N   +                 +   N +G T L +
Sbjct: 119 CTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ------LEAENYDGHTPLHV 164

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 66.0 bits (162), Expect = 5e-13
 Identities = 26/143 (18%), Positives = 45/143 (31%), Gaps = 27/143 (18%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEA 102
            V       LH A +  +   +  L+      E L+     G+TALHLA     +   E 
Sbjct: 4   YVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK 63

Query: 103 L------VDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI-------RENSNR 149
           L      V               ++ G+T LHLA   +      +L+       R+ S+ 
Sbjct: 64  LYAAGAGVLV------------AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDT 111

Query: 150 RIMIRINTVNKEGQTTLQLCNAN 172
            +    +           + +  
Sbjct: 112 YLTQSQDCTPDTSHAPAAVDSQP 134

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.6 bits (153), Expect = 9e-12
 Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 35/174 (20%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           ++N  G+T +HL +  G+A TV      G  +        +      LH A         
Sbjct: 40  LQNDLGQTALHLAAILGEASTVEKLYAAGAGVL-----VAERGGHTALHLACRVRAHTCA 94

Query: 67  RALVS----ICPESLEKLTSNGE---------TALHLAVKKSRSDAFEALVDEAKNHRKE 113
             L+        ++ +   +  +          A   +     ++      D        
Sbjct: 95  CVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQ---- 150

Query: 114 HLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE-GQTTL 166
                ++ +G+T LH+A ++K  ++V LL    ++      +N      G+T L
Sbjct: 151 --LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD------LNKPEPTCGRTPL 196

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 22/142 (15%), Positives = 41/142 (28%), Gaps = 27/142 (19%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSS-MIPLHRAALDGNSDV 65
            +N  G T +H+     DAE VR+      ++N     + + +    PLH A     + V
Sbjct: 153 AENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN-----KPEPTCGRTPLHLAVEAQAASV 207

Query: 66  IRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKD 120
           +  L+                 G T L  A+ +        L    A             
Sbjct: 208 LELLLKAGADP-----TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPED-------G 255

Query: 121 KEGNTVLHLATLNKLKQIVELL 142
            +  +    +  +      +  
Sbjct: 256 GDKLSPCSSSGSDSDSDNRDEG 277

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 9/90 (10%)

Query: 77  LEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLK 136
              +T +G+TALHLAV        + L+  +  H    L   ++  G T LHLA +    
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL---QNDLGQTALHLAAILGEA 58

Query: 137 QIVELLIRENSNRRIMIRINTVNKEGQTTL 166
             VE L    +       +    + G T L
Sbjct: 59  STVEKLYAAGAG------VLVAERGGHTAL 82

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 45.2 bits (108), Expect = 6e-06
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL-CNANS 173
           +F +  ++G+T LHLA +++ +  ++ L+  ++       ++  N  GQT L L      
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHE---YLDLQNDLGQTALHLAAILGE 57

Query: 174 QDSA 177
             + 
Sbjct: 58  ASTV 61

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 74.9 bits (185), Expect = 7e-16
 Identities = 30/175 (17%), Positives = 57/175 (32%), Gaps = 36/175 (20%)

Query: 9   ASIKNQRGETTMHLLSTDGDA--ETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGN 62
           + +K+ +G+T +H     G    E ++I    G           D +   PL RA    N
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPT-----AKDKADETPLMRAMEFRN 185

Query: 63  SDVIRALVSICPES----LEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRK 112
            + +  ++   P      L+     G + LH A+  +  D           V+       
Sbjct: 186 REALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNM------ 239

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ 167
                 +D E    L+L+    +  + + L+       + +        G T L 
Sbjct: 240 ------EDNEHTVPLYLSVRAAMVLLTKELL---QKTDVFLIQACPYHNGTTVLP 285

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 38/162 (23%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           I+N+ G T +HL    G  +T +     G   +             P+H A +   +D++
Sbjct: 48  IQNRFGCTALHLACKFGCVDTAKYLASVGEVHS-------LWHGQKPIHLAVMANKTDLV 100

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV 126
            AL       +E     G+    L  +    +  E                 K  +G T 
Sbjct: 101 VAL-------VEGAKERGQMPESLLNECDEREVNEIGSHV------------KHCKGQTA 141

Query: 127 LHLATL--NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           LH       +  +++++L++  ++          +K  +T L
Sbjct: 142 LHWCVGLGPEYLEMIKILVQLGAS------PTAKDKADETPL 177

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 16/174 (9%), Positives = 47/174 (27%), Gaps = 33/174 (18%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
             N++G + +H        +    F     ++N       DN   +PL+ +       + 
Sbjct: 206 YANKQGNSHLHWAILINWEDVAMRFVEMGIDVN-----MEDNEHTVPLYLSVRAAMVLLT 260

Query: 67  RALVSICPESLEKLT------------SNGETALHLAVKKSRSDAFEALVDEAKNHRKEH 114
           + L+      L +                    +  A   S+ +  + L ++     +  
Sbjct: 261 KELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR-- 318

Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                   G              +  + +  ++       + T ++    +  +
Sbjct: 319 ----SLNTGAGGAVKRKKKAAPAVKRMKLAPSAP------VRTRSRSRARSSAV 362

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 34/151 (22%), Positives = 53/151 (35%), Gaps = 35/151 (23%)

Query: 35  FGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS----ICPESLEKLTSNGETALHL 90
           F ++NR    + D+ +M  +H AA  G +D +R L+                 G TALHL
Sbjct: 8   FPKLNRI---KSDDENMEKIHVAARKGQTDEVRRLIETGVSP-----TIQNRFGCTALHL 59

Query: 91  AVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI------- 143
           A K    D  + L    + H            G   +HLA +     +V  L+       
Sbjct: 60  ACKFGCVDTAKYLASVGEVH--------SLWHGQKPIHLAVMANKTDLVVALVEGAKERG 111

Query: 144 --------RENSNRRIMIRINTVNKEGQTTL 166
                     +      I  +  + +GQT L
Sbjct: 112 QMPESLLNECDEREVNEIGSHVKHCKGQTAL 142

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 54.9 bits (133), Expect = 5e-09
 Identities = 12/132 (9%), Positives = 33/132 (25%), Gaps = 19/132 (14%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRI-------FGEINREL-----CLEVDNSSMIPLHRAA 58
           +++      ++L          +        F             L      +  +  AA
Sbjct: 239 MEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAA 298

Query: 59  LDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTW 118
                +V++ L     E + +  + G        KK+        +  +   R       
Sbjct: 299 DPSKQEVLQLLQEKLDE-VVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRT------ 351

Query: 119 KDKEGNTVLHLA 130
           + +       ++
Sbjct: 352 RSRSRARSSAVS 363

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.1 bits (183), Expect = 7e-16
 Identities = 30/177 (16%), Positives = 53/177 (29%), Gaps = 34/177 (19%)

Query: 9   ASIKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSD 64
                    + MH  +  G   ++R        +N      +    + PLH A L G+  
Sbjct: 52  LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVN-----IITADHVSPLHEACLGGHLS 106

Query: 65  VIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWK 119
            ++ L+     +       +T++  T L  A      D    L+   A            
Sbjct: 107 CVKILLKHGAQV-----NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ--------P 153

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL-CNANSQD 175
           + +  + +H A      + V  LI    N      I+       T L L C    + 
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGN------IDHKISHLGTPLYLACENQQRA 204

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 74.1 bits (183), Expect = 8e-16
 Identities = 25/160 (15%), Positives = 61/160 (38%), Gaps = 20/160 (12%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
                  T +      G  + V +   +     ++ ++    P+H AA  G+ + + +L+
Sbjct: 120 GVTADWHTPLFNACVSGSWDCVNLL--LQHGASVQPESDLASPIHEAARRGHVECVNSLI 177

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDKEGNTVLH 128
           +     ++   S+  T L+LA +  +    + L++     N         + K  ++ LH
Sbjct: 178 AYGGN-IDHKISHLGTPLYLACENQQRACVKKLLESGADVN---------QGKGQDSPLH 227

Query: 129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                  +++  LL+   ++          N EG+  ++L
Sbjct: 228 AVVRTASEELACLLMDFGAD------TQAKNAEGKRPVEL 261

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.2 bits (160), Expect = 1e-12
 Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 36/166 (21%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           I      + +H     G    V+I      ++N      V      PL  A + G+ D +
Sbjct: 87  IITADHVSPLHEACLGGHLSCVKILLKHGAQVN-----GVTADWHTPLFNACVSGSWDCV 141

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKD 120
             L+     + PES      +  + +H A ++   +   +L+      +H        K 
Sbjct: 142 NLLLQHGASVQPES------DLASPIHEAARRGHVECVNSLIAYGGNIDH--------KI 187

Query: 121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
               T L+LA  N+ +  V+ L+   ++      +N   K   + L
Sbjct: 188 SHLGTPLYLACENQQRACVKKLLESGAD------VNQ-GKGQDSPL 226

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 23/147 (15%)

Query: 9   ASI-KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNS 63
           AS+       + +H  +  G  E V       G I+        +    PL+ A  +   
Sbjct: 149 ASVQPESDLASPIHEAARRGHVECVNSLIAYGGNID-----HKISHLGTPLYLACENQQR 203

Query: 64  DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDK 121
             ++ L+    + + +     ++ LH  V+ +  +    L+D               K+ 
Sbjct: 204 ACVKKLLESGAD-VNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQA--------KNA 253

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSN 148
           EG   + L            L RE ++
Sbjct: 254 EGKRPVELVPPES-PLAQLFLEREGAS 279

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 47.1 bits (113), Expect = 1e-06
 Identities = 11/114 (9%), Positives = 31/114 (27%), Gaps = 23/114 (20%)

Query: 57  AALDGNSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
            +   +      LV     +     ++   +G                  L+ +A +   
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVS--- 58

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                       + +H A ++  +  +  LI +         +N +  +  + L
Sbjct: 59  ----------DWSPMHEAAIHGHQLSLRNLISQGWA------VNIITADHVSPL 96

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 72.0 bits (178), Expect = 7e-16
 Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 26/159 (16%)

Query: 16  GETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
               +   +  G  + VRI      ++N       D S   PLH AA +G+ +++  L+ 
Sbjct: 14  LGKKLLEAARAGRDDEVRILMANGADVN-----AEDASGWTPLHLAAFNGHLEIVEVLLK 68

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNTVLHL 129
              + +  +   G T L LA      +  E L+   A  N          D EG+T LHL
Sbjct: 69  NGAD-VNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA--------NDMEGHTPLHL 119

Query: 130 ATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
           A +    +IVE+L++  ++      +N  +K G+T   +
Sbjct: 120 AAMFGHLEIVEVLLKNGAD------VNAQDKFGKTAFDI 152

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 68.5 bits (169), Expect = 1e-14
 Identities = 36/142 (25%), Positives = 62/142 (43%), Gaps = 20/142 (14%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            ++  G T +HL + +G  E V +      ++N      VD++ M PL  AAL G+ +++
Sbjct: 42  AEDASGWTPLHLAAFNGHLEIVEVLLKNGADVN-----AVDHAGMTPLRLAALFGHLEIV 96

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGN 124
             L+    + +      G T LHLA      +  E L+   A  N         +DK G 
Sbjct: 97  EVLLKNGAD-VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNA--------QDKFGK 147

Query: 125 TVLHLATLNKLKQIVELLIREN 146
           T   ++  N  + + E+L + N
Sbjct: 148 TAFDISIDNGNEDLAEILQKLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 51.2 bits (124), Expect = 2e-08
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 24/91 (26%)

Query: 82  SNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKDKEGNTVLHLATLNKL 135
           S+    L  A +  R D    L      V+             +D  G T LHLA  N  
Sbjct: 12  SDLGKKLLEAARAGRDDEVRILMANGADVNA------------EDASGWTPLHLAAFNGH 59

Query: 136 KQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            +IVE+L++  ++      +N V+  G T L
Sbjct: 60  LEIVEVLLKNGAD------VNAVDHAGMTPL 84

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.5 bits (91), Expect = 6e-04
 Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 6/48 (12%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
              +    L  A        V +L+   ++      +N  +  G T L
Sbjct: 10  HGSDLGKKLLEAARAGRDDEVRILMANGAD------VNAEDASGWTPL 51

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.8 bits (177), Expect = 1e-15
 Identities = 29/169 (17%), Positives = 55/169 (32%), Gaps = 33/169 (19%)

Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           + S     G     +   DG + +      I      +V +    P   AA   +   + 
Sbjct: 6   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAA----DVVSEYETPWWTAARKADEQALS 61

Query: 68  ALVS---ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWK 119
            L+    +     + +  NG TAL              L +     + ++          
Sbjct: 62  QLLEDRDV-----DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRD---------- 106

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            + G T LH+A      ++VE L+   ++      I   ++ G T L+L
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELGAD------IEVEDERGLTALEL 149

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 71.0 bits (175), Expect = 2e-15
 Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 24/140 (17%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---GEINRELCLEVDNSSMIPLHRAALDGNSDVIRA 68
                ET     +   D + +       +++      VD +    L   A  G+   +R 
Sbjct: 40  VVSEYETPWWTAARKADEQALSQLLEDRDVD-----AVDENGRTALLFVAGLGSDKCVRL 94

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWKDKEG 123
           L     +   +    G TALH+A    R +  EALV+     E +           D+ G
Sbjct: 95  LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-----------DERG 143

Query: 124 NTVLHLATLNKLKQIVELLI 143
            T L LA            +
Sbjct: 144 LTALELAREILKTTPKGNPM 163

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 62.9 bits (154), Expect = 2e-12
 Identities = 23/132 (17%), Positives = 44/132 (33%), Gaps = 20/132 (15%)

Query: 37  EINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSR 96
           E+N+ +         +       DG+S        I  +    + S  ET    A +K+ 
Sbjct: 1   EVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKAD 56

Query: 97  SDAFEALVDEA-KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRI 155
             A   L+++   +          D+ G T L         + V LL    ++      +
Sbjct: 57  EQALSQLLEDRDVDA--------VDENGRTALLFVAGLGSDKCVRLLAEAGAD------L 102

Query: 156 NTVN-KEGQTTL 166
           +  + + G T L
Sbjct: 103 DHRDMRGGLTAL 114

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 43.3 bits (103), Expect = 1e-05
 Identities = 23/107 (21%), Positives = 41/107 (38%), Gaps = 19/107 (17%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVD-NSSMIPLHRAALDGNSDVI 66
            ++ G T +  ++  G  + VR+    G +++       D    +  LH AA     +V+
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLTALHMAAGYVRPEVV 126

Query: 67  RALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN 109
            ALV     I     E     G TAL LA +  ++      +   + 
Sbjct: 127 EALVELGADI-----EVEDERGLTALELAREILKTTPKGNPMQFGRR 168

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 72.6 bits (179), Expect = 1e-15
 Identities = 28/140 (20%), Positives = 45/140 (32%), Gaps = 24/140 (17%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---GEINRELCLEVDNSSMIPLHRAALDGNSDVIRA 68
                ET     +   D + +       +++      VD +    L   A  G+   +R 
Sbjct: 41  VVSEYETPWWTAARKADEQALSQLLEDRDVD-----AVDENGRTALLFVAGLGSDKCVRL 95

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWKDKEG 123
           L     +   +    G TALH+A    R +  EALV+     E +           D+ G
Sbjct: 96  LAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE-----------DERG 144

Query: 124 NTVLHLATLNKLKQIVELLI 143
            T L LA            +
Sbjct: 145 LTALELAREILKTTPKGNPM 164

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 63.0 bits (154), Expect = 5e-12
 Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 20/133 (15%)

Query: 36  GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKS 95
           GE+N+ +         +       DG+S        I  +    + S  ET    A +K+
Sbjct: 1   GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKA 56

Query: 96  RSDAFEALVDEA-KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR 154
              A   L+++   +          D+ G T L         + V LL    ++      
Sbjct: 57  DEQALSQLLEDRDVDA--------VDENGRTALLFVAGLGSDKCVRLLAEAGAD------ 102

Query: 155 INTVNKE-GQTTL 166
           ++  +   G T L
Sbjct: 103 LDHRDMRGGLTAL 115

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 61.5 bits (150), Expect = 2e-11
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 27/158 (17%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVD-NSSMIPLHRAALDGNSDVI 66
            ++ G T +  ++  G  + VR+    G +++       D    +  LH AA     +V+
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAGADLD-----HRDMRGGLTALHMAAGYVRPEVV 127

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA--KNHRKEHLFTW------ 118
            ALV +  + +E     G TAL LA +  ++      +         K            
Sbjct: 128 EALVELGAD-IEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEY 186

Query: 119 --------KDKEGNTVLHLATLNKLKQIVELLIRENSN 148
                   K  +G  V +L           +     + 
Sbjct: 187 AEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 73.3 bits (181), Expect = 3e-15
 Identities = 27/165 (16%), Positives = 52/165 (31%), Gaps = 27/165 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF-----GEINRELCLEVDNSSMIPLHRAALDGNSDV 65
           +  +  +  +   +  G+ E +           +       D     PLH AA      +
Sbjct: 19  LTGEYKKDELLEAARSGNEEKLMALLTPLNVNCH-----ASDGRKSTPLHLAAGYNRVRI 73

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AK-NHRKEHLFTWKDKEG 123
           ++ L+    + +      G   LH A      +  E L+   A  N          D   
Sbjct: 74  VQLLLQHGAD-VHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNA--------MDLWQ 124

Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            T LH A      ++  LL+   ++         VN  G++ + +
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGAD------PTLVNCHGKSAVDM 163

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.8 bits (177), Expect = 1e-14
 Identities = 31/158 (19%), Positives = 49/158 (31%), Gaps = 40/158 (25%)

Query: 16  GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL-----V 70
           G++ + L                               L  AA  GN + + AL     V
Sbjct: 4   GKSALDLADPSAK---------AV-----LTGEYKKDELLEAARSGNEEKLMALLTPLNV 49

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AK-NHRKEHLFTWKDKEGNTVLH 128
           +              T LHLA   +R    + L+   A  +         KDK G   LH
Sbjct: 50  NC-----HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA--------KDKGGLVPLH 96

Query: 129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
            A      ++ ELL++  +       +N ++    T L
Sbjct: 97  NACSYGHYEVTELLLKHGAC------VNAMDLWQFTPL 128

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 71.0 bits (175), Expect = 1e-14
 Identities = 32/160 (20%), Positives = 55/160 (34%), Gaps = 29/160 (18%)

Query: 18  TTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDG---NSDVIRALV 70
            ++   + + D   V+          ++       S    LH A          V   L+
Sbjct: 180 HSLLQAAREADLAKVKKTLALEIINFKQ-----PQSHETALHCAVASLHPKRKQVAELLL 234

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AK-NHRKEHLFTWKDKEGNTVLH 128
                 + +   +  T LH+A +++ +D  E L    AK N          D  G T LH
Sbjct: 235 RKGAN-VNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA--------LDSLGQTALH 285

Query: 129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            A L    Q   LL+   S+       + ++ +G T  Q+
Sbjct: 286 RAALAGHLQTCRLLLSYGSD------PSIISLQGFTAAQM 319

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.4 bits (171), Expect = 6e-14
 Identities = 26/141 (18%), Positives = 55/141 (39%), Gaps = 16/141 (11%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
             + R  T +HL +       V++    G +++       D   ++PLH A   G+ +V 
Sbjct: 53  ASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVH-----AKDKGGLVPLHNACSYGHYEVT 107

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV 126
             L+      +  +     T LH A  K+R +    L+    +       T  +  G + 
Sbjct: 108 ELLLKHGAC-VNAMDLWQFTPLHEAASKNRVEVCSLLLSHGAD------PTLVNCHGKSA 160

Query: 127 LHLATLNKLKQIVELLIRENS 147
           + +A   +L++ +    + +S
Sbjct: 161 VDMAPTPELRERLTYEFKGHS 181

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.1 bits (157), Expect = 4e-12
 Identities = 30/162 (18%), Positives = 56/162 (34%), Gaps = 34/162 (20%)

Query: 12  KNQRGETTMHLLSTDGDA---ETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSD 64
           + Q  ET +H           +   +    G  +N     E +   M PLH AA   ++D
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKGANVN-----EKNKDFMTPLHVAAERAHND 261

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA--KNHRKEHLFTWKDKE 122
           V+  L     + +  L S G+TALH A           L+      +            +
Sbjct: 262 VMEVLHKHGAK-MNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSI--------ISLQ 312

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
           G T   +       + V+ ++ E++       + T + + + 
Sbjct: 313 GFTAAQMGN-----EAVQQILSESTP------MRTSDVDYRL 343

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 27/160 (16%), Positives = 52/160 (32%), Gaps = 34/160 (21%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
            K++ G   +H   + G  E   +       +N      +D     PLH AA     +V 
Sbjct: 86  AKDKGGLVPLHNACSYGHYEVTELLLKHGACVN-----AMDLWQFTPLHEAASKNRVEVC 140

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV 126
             L+S   +    +  +G++A+ +A      +                        G+++
Sbjct: 141 SLLLSHGAD-PTLVNCHGKSAVDMAPTPELRERLTYEFK-----------------GHSL 182

Query: 127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           L  A    L ++ + L  E  N           +  +T L
Sbjct: 183 LQAAREADLAKVKKTLALEIIN-------FKQPQSHETAL 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 26/85 (30%)

Query: 83  NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLH-LATLNKLKQIVEL 141
            G++AL LA          A                  +     L   A     ++++ L
Sbjct: 3   FGKSALDLADPS-------AKAVL------------TGEYKKDELLEAARSGNEEKLMAL 43

Query: 142 LIRENSNRRIMIRINTVNKEGQTTL 166
           L   N N       +  +    T L
Sbjct: 44  LTPLNVN------CHASDGRKSTPL 62

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 72.1 bits (177), Expect = 3e-15
 Identities = 34/198 (17%), Positives = 54/198 (27%), Gaps = 50/198 (25%)

Query: 12  KNQRGETTMH---LLSTDGDAETVRIFGEINREL----------CLEVDNSSMIPLHRAA 58
           +   G+T +    L   DG    +    +I+++           C +        LH A 
Sbjct: 39  EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAI 98

Query: 59  LDGNSDVIRALVS------------ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
              +   ++ LV                +        GE  L LA    + D    L++ 
Sbjct: 99  EKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN 158

Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNK----------------LKQIVELLIRENSNRR 150
                        D  GNTVLH   +                  L Q+   L        
Sbjct: 159 PHQPASLEA---TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQL-- 213

Query: 151 IMIRINTVNKEGQTTLQL 168
                   N +G T L+L
Sbjct: 214 ----EEISNHQGLTPLKL 227

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 63.3 bits (154), Expect = 4e-12
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 24/161 (14%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF------------GEINRELCLEVDNSSMIPLHRAAL 59
           +  +G + +H+       + V++             G   ++          +PL  AA 
Sbjct: 86  EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAAC 145

Query: 60  DGNSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSR-SDAFEALVDEAKNHRKEH-- 114
               DV+  L+     P SLE   S G T LH  V  +  S    ALV    +   +   
Sbjct: 146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGA 205

Query: 115 -------LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
                  L    + +G T L LA      +I   +++   +
Sbjct: 206 RLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFS 246

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 57.5 bits (139), Expect = 4e-10
 Identities = 25/136 (18%), Positives = 43/136 (31%), Gaps = 22/136 (16%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLT-------SNGETALHLAVKKSRS---DAFEA 102
            L      G  + +  L+     + + LT       S G+T L  AV   +         
Sbjct: 5   RLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMP 64

Query: 103 LVDEAKNHRKEHLFTW-----KDKEGNTVLHLATLNKLKQIVELLIR-------ENSNRR 150
           L+   K+              +  +G++ LH+A   +  Q V+LL+            R 
Sbjct: 65  LLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRF 124

Query: 151 IMIRINTVNKEGQTTL 166
                 T    G+  L
Sbjct: 125 FQKHQGTCFYFGELPL 140

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 69.7 bits (172), Expect = 3e-15
 Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 37/165 (22%)

Query: 15  RGETTMHLLSTDGDAETVRIF-----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
           R    +   +  GD + VR          +      ++      L      G++ +   L
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPD-----ALNRFGKTALQVMMF-GSTAIALEL 54

Query: 70  VS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEG 123
           +               ++G + +H A +    D  + LV+  A  N          D  G
Sbjct: 55  LKQGASP-----NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV--------PDGTG 101

Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
              +HLA       +V  L    S+      ++  +  G T L+L
Sbjct: 102 ALPIHLAVQEGHTAVVSFLA-AESD------LHRRDARGLTPLEL 139

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.2 bits (155), Expect = 9e-13
 Identities = 30/141 (21%), Positives = 49/141 (34%), Gaps = 28/141 (19%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            N+ G+T + +    G               N       D S   P+H AA  G  D ++
Sbjct: 32  LNRFGKTALQV-MMFGSTAIALELLKQGASPN-----VQDTSGTSPVHDAARTGFLDTLK 85

Query: 68  ALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEA-KNHRKEHLFTWKDKE 122
            LV     +           G   +HLAV++  +     L  E+  +         +D  
Sbjct: 86  VLVEHGADV-----NVPDGTGALPIHLAVQEGHTAVVSFLAAESDLHR--------RDAR 132

Query: 123 GNTVLHLATLNKLKQIVELLI 143
           G T L LA     + +V++L 
Sbjct: 133 GLTPLELALQRGAQDLVDILQ 153

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 47.0 bits (113), Expect = 5e-07
 Identities = 19/102 (18%), Positives = 46/102 (45%), Gaps = 17/102 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +++  G + +H  +  G  +T+++      ++N       D +  +P+H A  +G++ V+
Sbjct: 63  VQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN-----VPDGTGALPIHLAVQEGHTAVV 117

Query: 67  RALVS---ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
             L +   +      +  + G T L LA+++   D  + L  
Sbjct: 118 SFLAAESDL-----HRRDARGLTPLELALQRGAQDLVDILQG 154

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 72.5 bits (179), Expect = 3e-15
 Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 19/161 (11%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
           + + + +    L    G    +     + +    +V          A   G+++ +  L+
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPP--VVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLL 60

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDKEGNTVLH 128
               + +     +G TALH A      D  + LV+     N          D EG   LH
Sbjct: 61  ERGAD-INYANVDGLTALHQACIDDNVDMVKFLVENGANINQ--------PDNEGWIPLH 111

Query: 129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
            A       I E LI + ++      +  VN EG T L + 
Sbjct: 112 AAASCGYLDIAEYLISQGAH------VGAVNSEGDTPLDIA 146

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.8 bits (172), Expect = 3e-14
 Identities = 27/159 (16%), Positives = 56/159 (35%), Gaps = 28/159 (17%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            +  G   +H  ++ G  +           +       V++    PL  A  +   ++++
Sbjct: 102 PDNEGWIPLHAAASCGYLDIAEYLISQGAHVG-----AVNSEGDTPLDIAEEEAMEELLQ 156

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVL 127
             V+       +   + E A     +    DA + L     N  +        K G T L
Sbjct: 157 NEVN-------RQGVDIEAARKEEERIMLRDARQWLNSGHINDVR------HAKSGGTAL 203

Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           H+A      ++++LLI+   +      +N  + +G T L
Sbjct: 204 HVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPL 236

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 69.1 bits (170), Expect = 5e-14
 Identities = 33/162 (20%), Positives = 60/162 (37%), Gaps = 26/162 (16%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +K   G        + GD E V      G +IN       +   +  LH+A +D N D++
Sbjct: 36  VKFDDG-AVFLAACSSGDTEEVLRLLERGADIN-----YANVDGLTALHQACIDDNVDMV 89

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGN 124
           + LV      + +  + G   LH A      D  E L+ + A             + EG+
Sbjct: 90  KFLVENGAN-INQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGA--------VNSEGD 140

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           T L +A    ++++++  +           I    KE +  +
Sbjct: 141 TPLDIAEEEAMEELLQNEVNRQGV-----DIEAARKEEERIM 177

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 67.9 bits (167), Expect = 1e-13
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 16/146 (10%)

Query: 8   LASIKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNS 63
             + +    E            +  +                   S    LH AA  G +
Sbjct: 158 EVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV-----RHAKSGGTALHVAAAKGYT 212

Query: 64  DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG 123
           +V++ L+    + +     +G T LH A    + +A   LV+   +          +K G
Sbjct: 213 EVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILVENLCD------MEAVNKVG 265

Query: 124 NTVLHLATLNKLKQIVELLIRENSNR 149
            T   +A  + L  + EL  ++N   
Sbjct: 266 QTAFDVADEDILGYLEELQKKQNLLH 291

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 69.7 bits (172), Expect = 4e-15
 Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 18/137 (13%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           +N  G T + +    G+ E  R     G   +       D +    +H AA  G  D ++
Sbjct: 34  QNGFGRTALQV-MKLGNPEIARRLLLRGANPD-----LKDRTGFAVIHDAARAGFLDTLQ 87

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNTV 126
            L+    + +    + G   LHLA K+      E LV   A N    H    ++ +G+T 
Sbjct: 88  TLLEFQAD-VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASN--VGH----RNHKGDTA 140

Query: 127 LHLATLNKLKQIVELLI 143
             LA L    ++V L+ 
Sbjct: 141 CDLARLYGRNEVVSLMQ 157

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 68.2 bits (168), Expect = 2e-14
 Identities = 32/164 (19%), Positives = 52/164 (31%), Gaps = 34/164 (20%)

Query: 15  RGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
                +   +  GD E +         +N       +      L    L GN ++ R L+
Sbjct: 4   PWGNELASAAARGDLEQLTSLLQNNVNVN-----AQNGFGRTALQVMKL-GNPEIARRLL 57

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKDKEGN 124
                   K    G   +H A +    D  + L      V+             +D EGN
Sbjct: 58  LRGANPDLK-DRTGFAVIHDAARAGFLDTLQTLLEFQADVNI------------EDNEGN 104

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
             LHLA      ++VE L++  +       +   N +G T   L
Sbjct: 105 LPLHLAAKEGHLRVVEFLVKHTA-----SNVGHRNHKGDTACDL 143

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 52.4 bits (127), Expect = 8e-09
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +K++ G   +H  +  G  +T++       ++N       DN   +PLH AA +G+  V+
Sbjct: 65  LKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN-----IEDNEGNLPLHLAAKEGHLRVV 119

Query: 67  RALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
             LV     ++      G+TA  LA    R++    +  
Sbjct: 120 EFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQA 158

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 49.7 bits (120), Expect = 8e-08
 Identities = 12/93 (12%), Positives = 27/93 (29%), Gaps = 25/93 (26%)

Query: 80  LTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKDKEGNTVLHLATLN 133
           +       L  A  +   +   +L      V+             ++  G T L +  L 
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNA------------QNGFGRTALQVMKLG 48

Query: 134 KLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
              +I   L+   +N       +  ++ G   +
Sbjct: 49  N-PEIARRLLLRGAN------PDLKDRTGFAVI 74

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.8 bits (172), Expect = 2e-14
 Identities = 30/144 (20%), Positives = 54/144 (37%), Gaps = 16/144 (11%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNS-DV 65
           + +  G + +HL +  G    V      G +++      +D + M PL  AA   +S D 
Sbjct: 104 LIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD-----MMDQNGMTPLMWAAYRTHSVDP 158

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT 125
            R L++           +  TALH AV    +     L++   N         ++ +G +
Sbjct: 159 TRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGAN------VDAQNIKGES 212

Query: 126 VLHLATLNKLKQIVELLIRENSNR 149
            L LA   K   ++  L      +
Sbjct: 213 ALDLAKQRKNVWMINHLQEARQAK 236

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 31/166 (18%), Positives = 60/166 (36%), Gaps = 32/166 (19%)

Query: 13  NQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRA 68
                T +H  +  G    V        + +      +D      +H AA  G++ ++  
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPS-----LIDGEGCSCIHLAAQFGHTSIVAY 127

Query: 69  LVSICPESLEKLTSNGETALHLAVKKSRS-DAFEALVD-----EAKNHRKEHLFTWKDKE 122
           L++   + ++ +  NG T L  A  ++ S D    L+         +             
Sbjct: 128 LIAKGQD-VDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGD----------KYH 176

Query: 123 GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
            NT LH A L     ++ LL+   +N      ++  N +G++ L L
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGAN------VDAQNIKGESALDL 216

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 23/129 (17%), Positives = 46/129 (35%), Gaps = 22/129 (17%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
            +D+ S   + +A   G  +  R LV    + + +      T LH A   +R D  +  +
Sbjct: 4   HIDDYSTWDIVKATQYGIYERCRELVEAGYD-VRQPDKENVTLLHWAAINNRIDLVKYYI 62

Query: 105 D-----EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN 159
                 +                 +T LH AT      +V  L++  ++       + ++
Sbjct: 63  SKGAIVDQLG----------GDLNSTPLHWATRQGHLSMVVQLMKYGAD------PSLID 106

Query: 160 KEGQTTLQL 168
            EG + + L
Sbjct: 107 GEGCSCIHL 115

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 65.1 bits (160), Expect = 9e-14
 Identities = 35/119 (29%), Positives = 57/119 (47%), Gaps = 23/119 (19%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EA 107
           PLH AA +G+ +V++ L+    + +     NG T LHLA +    +  + L++      A
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 108 KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           K           DK G T LHLA  N   ++V+LL+   ++      +N  +K G+T L
Sbjct: 64  K-----------DKNGRTPLHLAARNGHLEVVKLLLEAGAD------VNAKDKNGRTPL 105

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 63.5 bits (156), Expect = 3e-13
 Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 26/137 (18%)

Query: 16  GETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
           G T +HL + +G  E V++    G ++N       D +   PLH AA +G+ +V++ L+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWKDKEGNTV 126
              + +     NG T LHLA +    +  + L++      AK           DK G T 
Sbjct: 57  AGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------DKNGRTP 104

Query: 127 LHLATLNKLKQIVELLI 143
           LHLA  N   ++V+LL+
Sbjct: 105 LHLAARNGHLEVVKLLL 121

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 49.7 bits (120), Expect = 3e-08
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 16/86 (18%)

Query: 83  NGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
           NG T LHLA +    +  + L++  A  N         KDK G T LHLA  N   ++V+
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNA--------KDKNGRTPLHLAARNGHLEVVK 52

Query: 141 LLIRENSNRRIMIRINTVNKEGQTTL 166
           LL+   ++      +N  +K G+T L
Sbjct: 53  LLLEAGAD------VNAKDKNGRTPL 72

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 45.4 bits (109), Expect = 1e-06
 Identities = 27/98 (27%), Positives = 50/98 (51%), Gaps = 10/98 (10%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
           K++ G T +HL + +G  E V++    G ++N       D +   PLH AA +G+ +V++
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVK 85

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
            L+    + +     NG T LHLA +    +  + L++
Sbjct: 86  LLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 64.7 bits (159), Expect = 1e-13
 Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 23/125 (18%)

Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD- 105
                 PLH AA +G+++ ++ L+S   + +   + +G T LHLA K   ++  + L+  
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64

Query: 106 ----EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE 161
                A+            K+GNT  HLA  N   +IV+LL  + ++      +N  +  
Sbjct: 65  GADVNAR-----------SKDGNTPEHLAKKNGHHEIVKLLDAKGAD------VNARSWG 107

Query: 162 GQTTL 166
                
Sbjct: 108 SSHHH 112

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 40.1 bits (95), Expect = 9e-05
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 6/49 (12%)

Query: 118 WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           W  K+GNT LH A  N   + V+ L+ + ++      +N  +K+G T L
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD------VNARSKDGNTPL 46

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 25/122 (20%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDE 106
            L  AA  G  D +R L++   +   K    G T L+LA      +  E L      V+ 
Sbjct: 17  KLLEAARAGQDDEVRILMANGADVNAK-DEYGLTPLYLATAHGHLEIVEVLLKNGADVNA 75

Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                        D  G T LHLA      +I E+L++  ++      +N  +K G+T  
Sbjct: 76  ------------VDAIGFTPLHLAAFIGHLEIAEVLLKHGAD------VNAQDKFGKTAF 117

Query: 167 QL 168
            +
Sbjct: 118 DI 119

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 63.9 bits (157), Expect = 3e-13
 Identities = 28/141 (19%), Positives = 51/141 (36%), Gaps = 28/141 (19%)

Query: 16  GETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
               +   +  G  + VRI      ++N       D   + PL+ A   G+ +++  L+ 
Sbjct: 14  LGKKLLEAARAGQDDEVRILMANGADVN-----AKDEYGLTPLYLATAHGHLEIVEVLLK 68

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKDKEGNT 125
              +      + G T LHLA      +  E L      V+             +DK G T
Sbjct: 69  NGADVNAV-DAIGFTPLHLAAFIGHLEIAEVLLKHGADVNA------------QDKFGKT 115

Query: 126 VLHLATLNKLKQIVELLIREN 146
              ++  N  + + E+L + N
Sbjct: 116 AFDISIGNGNEDLAEILQKLN 136

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 24/98 (24%)

Query: 75  ESLEKLTSNGETALHLAVKKSRSDAFEAL------VDEAKNHRKEHLFTWKDKEGNTVLH 128
                  S+    L  A +  + D    L      V+             KD+ G T L+
Sbjct: 5   HHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA------------KDEYGLTPLY 52

Query: 129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
           LAT +   +IVE+L++  ++      +N V+  G T L
Sbjct: 53  LATAHGHLEIVEVLLKNGAD------VNAVDAIGFTPL 84

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 63.6 bits (156), Expect = 3e-13
 Identities = 23/131 (17%), Positives = 46/131 (35%), Gaps = 20/131 (15%)

Query: 16  GETTMHLLSTDGDAETVRIF---G-EINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
            +        +GD + V+ +   G ++N             PLH AA  G  +++  L+ 
Sbjct: 7   CDKEFMWALKNGDLDEVKDYVAKGEDVN-----RTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNTVLHL 129
              + +     +  T L  AV +      + L+ + A K          K  +G T    
Sbjct: 62  KGAD-INAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTV--------KGPDGLTAFEA 112

Query: 130 ATLNKLKQIVE 140
                +K +++
Sbjct: 113 TDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.5 bits (148), Expect = 4e-12
 Identities = 22/118 (18%), Positives = 41/118 (34%), Gaps = 17/118 (14%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNH 110
               A  +G+ D ++  V+   + + +    G   LH A    + +  E L+ + A  N 
Sbjct: 10  EFMWALKNGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINA 68

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                    DK   T L  A        V+LL+ + ++            +G T  + 
Sbjct: 69  --------PDKHHITPLLSAVYEGHVSCVKLLLSKGAD------KTVKGPDGLTAFEA 112

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 51.2 bits (124), Expect = 1e-08
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 16/87 (18%)

Query: 82  SNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIV 139
           S  +     A+K    D  +  V +    N           + G   LH A      +I+
Sbjct: 5   SMCDKEFMWALKNGDLDEVKDYVAKGEDVNR--------TLEGGRKPLHYAADCGQLEIL 56

Query: 140 ELLIRENSNRRIMIRINTVNKEGQTTL 166
           E L+ + ++      IN  +K   T L
Sbjct: 57  EFLLLKGAD------INAPDKHHITPL 77

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 66.0 bits (161), Expect = 5e-13
 Identities = 33/186 (17%), Positives = 55/186 (29%), Gaps = 31/186 (16%)

Query: 8   LASIKNQRG--ETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDV 65
            A +    G  +T   LL      ++++ F   +     +        LH A    N  +
Sbjct: 60  KAMLNLHNGQNDTIALLLDVARKTDSLKQFVNAS---YTDSYYKGQTALHIAIERRNMTL 116

Query: 66  IRALVS-------------ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
           +  LV                          GE  L LA   ++    + L+    N  +
Sbjct: 117 VTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQ---NSWQ 173

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR----------INTVNKEG 162
               + +D  GNTVLH         +       +    I+I               N++G
Sbjct: 174 PADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKG 233

Query: 163 QTTLQL 168
            T L L
Sbjct: 234 LTPLAL 239

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 24/162 (14%), Positives = 52/162 (32%), Gaps = 25/162 (15%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF-------------GEINRELCLEVDNSSMIPLHRAA 58
              +G+T +H+     +   V +                  +           +PL  AA
Sbjct: 97  SYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAA 156

Query: 59  LDGNSDVIRALVS--ICPESLEKLTSNGETALHLAVK---------KSRSDAFEALVDEA 107
                 +++ L+     P  +    S G T LH  V+         K  +  +  ++   
Sbjct: 157 CTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILG 216

Query: 108 KN-HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
              H    L    +++G T L LA  +    ++  +++   +
Sbjct: 217 AKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH 258

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 57.1 bits (138), Expect = 6e-10
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 23/137 (16%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLT-------SNGETALHLAVKKSRS---DAFEA 102
            +  A    N   + +L+     S ++LT         G+T L  A+    +   D    
Sbjct: 16  SIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIAL 75

Query: 103 LVDEAKNHRKEHLF-----TWKDKEGNTVLHLATLNKLKQIVELLI--------RENSNR 149
           L+D A+       F     T    +G T LH+A   +   +V LL+          N + 
Sbjct: 76  LLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDF 135

Query: 150 RIMIRINTVNKEGQTTL 166
               +       G+  L
Sbjct: 136 FKKTKGRPGFYFGELPL 152

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 17/144 (11%), Positives = 32/144 (22%), Gaps = 34/144 (23%)

Query: 9   ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCL----EVDNSSMIPLHRAALDGNSD 64
                  GE  + L +       V+    +            D+     LH      ++ 
Sbjct: 141 GRPGFYFGELPLSLAACTNQLAIVKFL--LQNSWQPADISARDSVGNTVLHALVEVADNT 198

Query: 65  VIR---------------ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN 109
           V                 A +    +  E     G T L LA    +      ++     
Sbjct: 199 VDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQ---- 254

Query: 110 HRKEHLFTWKDKEGNTVLHLATLN 133
                    ++       H A  +
Sbjct: 255 ---------REIHEPECRHAAAHH 269

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 84  GETALHLAVKKSRSDAFEALVDEAKNHRKEH--LFTWKDKEGNTVLHLATLN---KLKQI 138
              ++  AV +S     E+L+   +  +K          + G T L  A LN        
Sbjct: 13  DRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT 72

Query: 139 VELLIR-----ENSNRRIMIRINTVNKEGQTTL 166
           + LL+      ++  + +         +GQT L
Sbjct: 73  IALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 64.5 bits (157), Expect = 1e-12
 Identities = 25/171 (14%), Positives = 50/171 (29%), Gaps = 30/171 (17%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
                    +L  +    E                    D  S   LH A   G+++++ 
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLAT-----RTDQDSRTALHWACSAGHTEIVE 57

Query: 68  ALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG 123
            L+     +           G + LH+A      +  +AL+ +  +          ++ G
Sbjct: 58  FLLQLGVPV-----NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA------VNQNG 106

Query: 124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
            T LH A      +I  +L+   +N       +  +    T +    A   
Sbjct: 107 CTPLHYAASKNRHEIAVMLLEGGAN------PDAKDHYDATAMHRAAAKGN 151

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 29/132 (21%), Positives = 50/132 (37%), Gaps = 10/132 (7%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
            NQ G T +H  ++    E   +  E         D+     +HRAA  GN  ++  L+ 
Sbjct: 102 VNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYDATAMHRAAAKGNLKMVHILLF 160

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT 131
                     + G T LHLA  + R +  + LV +  +         ++KE  T L +A 
Sbjct: 161 YKAS-TNIQDTEGNTPLHLACDEERVEEAKFLVTQGAS------IYIENKEEKTPLQVAK 213

Query: 132 LNKLKQIVELLI 143
                 ++   +
Sbjct: 214 GG--LGLILKRL 223

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 64.2 bits (157), Expect = 1e-12
 Identities = 32/161 (19%), Positives = 46/161 (28%), Gaps = 37/161 (22%)

Query: 12  KNQRGETTMHLLSTDGDAETVRI---FG-EINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
            N+ G T +H      +   V      G  +N       D+    PLH AA   ++ +  
Sbjct: 50  PNEEGITALHNAICGANYSIVDFLITAGANVN-----SPDSHGWTPLHCAASCNDTVICM 104

Query: 68  ALVSICPESLEKLTSNGETALHLA--------------------VKKSRSDAFEALVDEA 107
           ALV           S+G TA                        +    S A  AL D +
Sbjct: 105 ALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYS 164

Query: 108 KNHRKEHLF--------TWKDKEGNTVLHLATLNKLKQIVE 140
                E  F          +D    T    A L+  +  V 
Sbjct: 165 AEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVP 205

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 63.0 bits (154), Expect = 4e-12
 Identities = 27/132 (20%), Positives = 47/132 (35%), Gaps = 16/132 (12%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
               + ++ L  AAL G  +V++  V    +   +    G TALH A+  +     + L+
Sbjct: 16  RARLNPLVLLLDAALTGELEVVQQAVKEMND-PSQPNEEGITALHNAICGANYSIVDFLI 74

Query: 105 DE-AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KEG 162
              A  +         D  G T LH A       I   L++  +       I      +G
Sbjct: 75  TAGANVNSP-------DSHGWTPLHCAASCNDTVICMALVQHGAA------IFATTLSDG 121

Query: 163 QTTLQLCNANSQ 174
            T  + C+   +
Sbjct: 122 ATAFEKCDPYRE 133

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 39/189 (20%)

Query: 16  GETTMH---LLSTDGDAETVRI----------FGEINRELCLEVDNSSMIPLHRAALDGN 62
           G+T +    L  + G  +T+ I            E       +V       LH A     
Sbjct: 46  GKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRC 105

Query: 63  SDVIRALVS-------------ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN 109
              +  LV                P+        GE  L LA   ++      L +    
Sbjct: 106 KHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE--NG 163

Query: 110 HRKEHLFTWKDKEGNTVLHLA---------TLNKLKQIVELLIRENSNRRIMIRINTV-N 159
           H++  L   +D  GNTVLH               + ++ +LL+ + +       +  + N
Sbjct: 164 HKQADL-RRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLN 222

Query: 160 KEGQTTLQL 168
            +G + L +
Sbjct: 223 NDGLSPLMM 231

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 63.6 bits (155), Expect = 4e-12
 Identities = 28/158 (17%), Positives = 49/158 (31%), Gaps = 25/158 (15%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF-------------GEINRELCLEVDNSSMIPLHRAA 58
              RG+T +H+         V +                   +          +PL  AA
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 59  LDGNSDVIRALVS--ICPESLEKLTSNGETALHLAV---------KKSRSDAFEALVDE- 106
                 ++  L         L +  S G T LH  V          K  +  ++ L+ + 
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
           AK     +L    + +G + L +A       I + +IR
Sbjct: 209 AKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 59.0 bits (143), Expect = 1e-10
 Identities = 29/139 (20%), Positives = 44/139 (31%), Gaps = 23/139 (16%)

Query: 53  PLHRAALDGNSDVIRALVSI-------CPESLEKLTSNGETALHLAV---KKSRSDAFEA 102
            L      G+ D +  L+S          +   +  S G+T L  A+      R+D    
Sbjct: 8   ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67

Query: 103 LVDEAKNHRKEHLF-----TWKDKEGNTVLHLATLNKLKQIVELLI--------RENSNR 149
           L+D A+       F           G T LH+A   + K  VELL+        +     
Sbjct: 68  LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127

Query: 150 RIMIRINTVNKEGQTTLQL 168
                       G+  L L
Sbjct: 128 FQPKDEGGYFYFGELPLSL 146

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 64.3 bits (156), Expect = 3e-12
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 22/172 (12%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCL---EVDNSSMIPLHRAALDGNS---- 63
             +  GE+ +       +      F  +   L       D+ +   LH   +        
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 64  -------DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLF 116
                  D++   +        +  +N + +        R D+    +D        ++ 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII--ANML 276

Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
             +D  G+T L++A       IV+ L+   ++          NK G   +  
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGAD------PFIANKSGLRPVDF 322

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 54.3 bits (130), Expect = 7e-09
 Identities = 29/167 (17%), Positives = 51/167 (30%), Gaps = 20/167 (11%)

Query: 13  NQRGETTMHLLSTDGDAETVRI---FG-EINRELCLEVDNSSMIPLHRAALDGNS---DV 65
           ++ G T +H L++  + E V+     G           DN     L +A    N+     
Sbjct: 128 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-----GDNMGESCLVKAVKSVNNYDSGT 182

Query: 66  IRALVSICPESLEKLTSNGETALHLAV----KKSRSDAFEALVDEAKNH--RKEHLFTWK 119
             AL+      L    S   T LH  +        S A +  +D       +K++     
Sbjct: 183 FEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQS 242

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                         + K  +   +  +    I   +N  +  G T L
Sbjct: 243 GTNEKESKPNDKNGERKDSILENL--DLKWIIANMLNAQDSNGDTCL 287

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 51.6 bits (123), Expect = 6e-08
 Identities = 24/140 (17%), Positives = 47/140 (33%), Gaps = 14/140 (10%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
           E        L R       ++  +L +       +  S+ +   H++      +  +A  
Sbjct: 58  EQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 117

Query: 105 DEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
           +   N     L    D+ GNT LH  T     ++V+ L++  SN          +  G++
Sbjct: 118 NTQLN-----LNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN------RLYGDNMGES 166

Query: 165 TLQ---LCNANSQDSAFKEI 181
            L        N     F+ +
Sbjct: 167 CLVKAVKSVNNYDSGTFEAL 186

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 18/134 (13%), Positives = 41/134 (30%), Gaps = 20/134 (14%)

Query: 11  IKNQRGETTMHLL----STDGDAETVRIFGEINREL-------CLEVDNSSMIPLHRAAL 59
           +++    T +H +       G +   + + +I            ++   +          
Sbjct: 196 LEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKN 255

Query: 60  DGNSDVIRALVSICPESLEKL---TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLF 116
               D I   + +       L    SNG+T L++A +       +AL+D   +       
Sbjct: 256 GERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGAD------P 309

Query: 117 TWKDKEGNTVLHLA 130
              +K G   +   
Sbjct: 310 FIANKSGLRPVDFG 323

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 55.1 bits (134), Expect = 2e-10
 Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 11/93 (11%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNH 110
           PLH AA +G+ +V++ L+    + +     NG T LHLA +    +  + L++  A  N 
Sbjct: 5   PLHLAARNGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA 63

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
                   KDK G T LHLA  N   ++V+LL+
Sbjct: 64  --------KDKNGRTPLHLAARNGHLEVVKLLL 88

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 49.7 bits (120), Expect = 2e-08
 Identities = 27/89 (30%), Positives = 41/89 (46%), Gaps = 22/89 (24%)

Query: 83  NGETALHLAVKKSRSDAFEALVD-----EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQ 137
           NG T LHLA +    +  + L++      AK           DK G T LHLA  N   +
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAGADVNAK-----------DKNGRTPLHLAARNGHLE 49

Query: 138 IVELLIRENSNRRIMIRINTVNKEGQTTL 166
           +V+LL+   ++      +N  +K G+T L
Sbjct: 50  VVKLLLEAGAD------VNAKDKNGRTPL 72

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 45.8 bits (110), Expect = 5e-07
 Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 16  GETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
           G T +HL + +G  E V++      ++N       D +   PLH AA +G+ +V++ L+ 
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVN-----AKDKNGRTPLHLAARNGHLEVVKLLLE 56

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
              + +     NG T LHLA +    +  + L++
Sbjct: 57  AGAD-VNAKDKNGRTPLHLAARNGHLEVVKLLLE 89

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 54.8 bits (133), Expect = 6e-10
 Identities = 23/140 (16%), Positives = 41/140 (29%), Gaps = 22/140 (15%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVI 66
           +     +  +   +  G  ETVR       + N      ++     P+    + G++ V 
Sbjct: 7   MLGGSSDAGLATAAARGQVETVRQLLEAGADPN-----ALNRFGRRPIQVMMM-GSAQVA 60

Query: 67  RALVSICPESLEKLTSNGET-ALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFTWKDKEG 123
             L+    E          T  +H A ++   D    L    A  +          D  G
Sbjct: 61  ELLLLHGAE-PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV--------CDAWG 111

Query: 124 NTVLHLATLNKLKQIVELLI 143
              + LA     + I   L 
Sbjct: 112 RLPVDLAEEQGHRDIARYLH 131

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 46.3 bits (111), Expect = 8e-07
 Identities = 12/90 (13%), Positives = 28/90 (31%), Gaps = 17/90 (18%)

Query: 78  EKLTSNGETALHLAVKKSRSDAFEALVDE--AKNHRKEHLFTWKDKEGNTVLHLATLNKL 135
             L  + +  L  A  + + +    L++     N          ++ G   + +  +   
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA--------LNRFGRRPIQVMMMGSA 57

Query: 136 KQIVELLIRENSNRRIMIRINTVNKEGQTT 165
            Q+ ELL+   +        N  +    T 
Sbjct: 58  -QVAELLLLHGAE------PNCADPATLTR 80

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 40.9 bits (97), Expect = 5e-05
 Identities = 20/100 (20%), Positives = 37/100 (37%), Gaps = 12/100 (12%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSM-IPLHRAALDGNSDV 65
             N+ G   + ++   G A+   +      E N       D +++  P+H AA +G  D 
Sbjct: 40  ALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPN-----CADPATLTRPVHDAAREGFLDT 93

Query: 66  IRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVD 105
           +  L       L+   + G   + LA ++   D    L  
Sbjct: 94  LVVLHRAGAR-LDVCDAWGRLPVDLAEEQGHRDIARYLHA 132

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 39.7 bits (94), Expect = 2e-04
 Identities = 8/50 (16%), Positives = 18/50 (36%), Gaps = 6/50 (12%)

Query: 119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                +  L  A      + V  L+   ++       N +N+ G+  +Q+
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAGAD------PNALNRFGRRPIQV 51

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 55.2 bits (134), Expect = 7e-10
 Identities = 23/170 (13%), Positives = 42/170 (24%), Gaps = 36/170 (21%)

Query: 9   ASIKNQRGETTMHLLSTDGDAETVRIFGE----INRELCLEVDNSSMIPLHRAALDGNSD 64
           A    +     +   +  G  E VR   E     N       ++    P+    + G++ 
Sbjct: 5   AGSSMEPSADWLATAAARGRVEEVRALLEAGANPN-----APNSYGRRPIQVMMM-GSAR 58

Query: 65  VIRALVS----ICPESLEKLTSNGET-ALHLAVKKSRSDAFEALVDE-A-KNHRKEHLFT 117
           V   L+                   T  +H A ++   D    L    A  +        
Sbjct: 59  VAELLLLHGAEP-----NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDV------- 106

Query: 118 WKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ 167
            +D  G   + LA     + +   L                N       +
Sbjct: 107 -RDAWGRLPVDLAEELGHRDVARYLRAAAGG------TRGSNHARIDAAE 149

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 46.7 bits (112), Expect = 8e-07
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 12/88 (13%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
           P+H AA +G  D +  L       L+   + G   + LA +    D    L   A     
Sbjct: 81  PVHDAAREGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEELGHRDVARYLRAAAG---- 135

Query: 113 EHLFTWKDKEGNTVLHLATLNKLKQIVE 140
                     G+    +        I +
Sbjct: 136 -------GTRGSNHARIDAAEGPSDIPD 156

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 13/112 (11%), Positives = 25/112 (22%), Gaps = 18/112 (16%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKL----------TSNGETALHLAVKK 94
                           G +D+         E  +                +  +   +  
Sbjct: 70  SRTKEGTTLFFPLFQGGGNDITGTT-----ELCKIFLEKGADITALYKPYKIVVFKNIFN 124

Query: 95  SRSDAFE--ALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
              D  E   L     +     L   KDK G T L      +    ++++  
Sbjct: 125 YFVDENEMIPLYKLIFSQSGLQL-LIKDKWGLTALEFVKRCQKPIALKMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.3 bits (131), Expect = 3e-09
 Identities = 23/172 (13%), Positives = 49/172 (28%), Gaps = 36/172 (20%)

Query: 16  GETTMHLLSTDGDAETVRIF---GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS- 71
              T+   +  G  E        G  ++E  L+  N     L     +    +   L++ 
Sbjct: 6   EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLK-SNILYDVLRNNNDEARYKISMFLINK 64

Query: 72  ---ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL------FTWKDKE 122
              I     +  T  G T      +   +D              +         T   K 
Sbjct: 65  GADI-----KSRTKEGTTLFFPLFQGGGNDITGTT------ELCKIFLEKGADITALYKP 113

Query: 123 GNTVLHLATLN------KLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
              V+     N      ++  + +L+  ++      +++   +K G T L+ 
Sbjct: 114 YKIVVFKNIFNYFVDENEMIPLYKLIFSQSG-----LQLLIKDKWGLTALEF 160

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 44.7 bits (106), Expect = 6e-06
 Identities = 14/84 (16%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 83  NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
           +    +  A      + F  L ++    ++      K      VL         +I   L
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESV---LKSNILYDVLRNNNDEARYKISMFL 61

Query: 143 IRENSNRRIMIRINTVNKEGQTTL 166
           I + ++      I +  KEG T  
Sbjct: 62  INKGAD------IKSRTKEGTTLF 79

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 49.5 bits (119), Expect = 4e-08
 Identities = 25/125 (20%), Positives = 45/125 (36%), Gaps = 20/125 (16%)

Query: 57  AALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-A-KNHRKEH 114
            +   +      LV         + S+    L  A +  + D    L+   A        
Sbjct: 1   GSSHHHHHHSSGLVPRGSH----MGSDLGKKLLEAARAGQDDEVRILMANGADVAA---- 52

Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ 174
               KDK G+T LHLA  N   ++V+LL+   ++      +   +K G+T   +   N  
Sbjct: 53  ----KDKNGSTPLHLAARNGHLEVVKLLLEAGAD------VXAQDKFGKTAFDISIDNGN 102

Query: 175 DSAFK 179
           +   +
Sbjct: 103 EDLAE 107

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 46.8 bits (112), Expect = 3e-07
 Identities = 22/102 (21%), Positives = 40/102 (39%), Gaps = 15/102 (14%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
            + +     L  AA  G  D +R L++    +          NG T LHLA +    +  
Sbjct: 19  HMGSDLGKKLLEAARAGQDDEVRILMANGADV-----AAKDKNGSTPLHLAARNGHLEVV 73

Query: 101 EALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL 142
           + L++   +         +DK G T   ++  N  + + E+L
Sbjct: 74  KLLLEAGAD------VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 43.3 bits (103), Expect = 6e-06
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIR 67
                   +   +  G  + VRI      ++        D +   PLH AA +G+ +V++
Sbjct: 20  MGSDLGKKLLEAARAGQDDEVRILMANGADVA-----AKDKNGSTPLHLAARNGHLEVVK 74

Query: 68  ALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL 103
            L+    +   +    G+TA  +++     D  E L
Sbjct: 75  LLLEAGADVXAQ-DKFGKTAFDISIDNGNEDLAEIL 109

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 25/169 (14%), Positives = 46/169 (27%), Gaps = 12/169 (7%)

Query: 6   PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELC----LEVDNSSMIPLHRAALDG 61
            + A++          LL          I      E      +    + +  +H A    
Sbjct: 202 FRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLS 261

Query: 62  NSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL--FTWK 119
           N D +  LV+            G   L   ++++     + +         + L      
Sbjct: 262 NPDGVFDLVTKSECL------QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 315

Query: 120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
             + N +L LA     +    LL+   S   +    N    E    L L
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVLALTKANNYYINETGGRLDL 364

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 19/203 (9%), Positives = 52/203 (25%), Gaps = 45/203 (22%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLE-VDNSSMIPLHRAALDGNSDVIRAL 69
           +          L + +G    +    E+     +  +   +      AA +G+  V+  L
Sbjct: 123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 182

Query: 70  VSICPESLEK-LTSNGETALHLA-------------------VKKSRSDAFE-------- 101
             + P      + +    A   A                   +  +    FE        
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242

Query: 102 --------------ALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL--IRE 145
                         A      +   + +   +  +G  +L        + +++ +  +  
Sbjct: 243 FIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLS 302

Query: 146 NSNRRIMIRINTVNKEGQTTLQL 168
               + +    T+  +    L+L
Sbjct: 303 IPGIKALAPTATIPGDANELLRL 325

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 47.7 bits (113), Expect = 1e-06
 Identities = 27/96 (28%), Positives = 41/96 (42%), Gaps = 9/96 (9%)

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
            P       +  E  LHLAVK +   +   LVD    +        K  +GNT LH A L
Sbjct: 179 QPLPGPDAQAPEELVLHLAVKVANQASL-PLVDFIIQNGGH--LDAKAADGNTALHYAAL 235

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
                 ++LL++  +       + TVN+ G+T L +
Sbjct: 236 YNQPDCLKLLLKGRAL------VGTVNEAGETALDI 265

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 53  PLHRAALDGN--SDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNH 110
            LH A    N  S  +   +      L+   ++G TALH A   ++ D  + L+      
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRAL- 251

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
                    ++ G T L +A     K+  ELL +  + 
Sbjct: 252 -----VGTVNEAGETALDIARKKHHKECEELLEQAQAG 284

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 47.3 bits (112), Expect = 2e-06
 Identities = 23/115 (20%), Positives = 47/115 (40%), Gaps = 13/115 (11%)

Query: 81  TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVE 140
               ETALHLAV+     +   +    +N         +  +G+T LH   L    + ++
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTALHYCCLTDNAECLK 222

Query: 141 LLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ 195
           LL+R  ++      I   N+ G+T L +     +    +    ++ +A++ +   
Sbjct: 223 LLLRGKAS------IEIANESGETPLDIA----KRLKHEHCEELLTQALSGRFNS 267

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.8 bits (108), Expect = 5e-06
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 8/100 (8%)

Query: 53  PLHRAAL--DGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNH 110
            LH A    D  S  I   +     +L+K T  G TALH       ++  + L+   +  
Sbjct: 172 ALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL---RGK 228

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRR 150
               +    ++ G T L +A   K +   ELL +  S R 
Sbjct: 229 ASIEI---ANESGETPLDIAKRLKHEHCEELLTQALSGRF 265

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 40.4 bits (94), Expect = 3e-04
 Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 3/105 (2%)

Query: 13  NQRGETTMHLLSTDGDAETVRI--FGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
           ++  ET +HL     D  ++ I  F   N     +        LH   L  N++ ++ L+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
                S+E    +GET L +A +       E L          H+
Sbjct: 226 RGKA-SIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHV 269

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 29/105 (27%), Positives = 43/105 (40%), Gaps = 11/105 (10%)

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNTVLHLAT 131
            P       +  E  LHLAVK + + A   LVD   +N         K  +GNT LH A 
Sbjct: 160 QPLPGPDAQAPEELVLHLAVKVA-NQASLPLVDFIIQNGGH---LDAKAADGNTALHYAA 215

Query: 132 LNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDS 176
           L      ++LL++  +       + TVN+ G+T L +        
Sbjct: 216 LYNQPDCLKLLLKGRAL------VGTVNEAGETALDIARKKHHKE 254

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.1 bits (98), Expect = 1e-04
 Identities = 38/268 (14%), Positives = 94/268 (35%), Gaps = 78/268 (29%)

Query: 28  DAETVRIFGEI---NRELCLEVDNSSMIPLHRAALDGN--SDVIRALVSICPESLEKL-- 80
           D ET    GE     +++ L V   + +       D     D+ ++++S   E ++ +  
Sbjct: 8   DFET----GEHQYQYKDI-LSVFEDAFV----DNFDCKDVQDMPKSILS--KEEIDHIIM 56

Query: 81  TSNGETALHL---AVKKSRSDAFEALVDEAKNHRKEHLFTW-------KDKEGNTVLHLA 130
           + +  +        +   + +  +  V+E    R  + F         +     T +++ 
Sbjct: 57  SKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRINYKFLMSPIKTEQRQPSMMTRMYIE 114

Query: 131 TLNKLKQIVELLIRENSNR-RIMIRINTVNKE---------------GQTTL--QLCNAN 172
             ++L    ++  + N +R +  +++     E               G+T +   +C + 
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSY 174

Query: 173 SQDSAFK-EIGWI--------------IQRAIAQQSPQL--PADGAAN------SSRNQT 209
                   +I W+              +Q+ + Q  P     +D ++N      S + + 
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 210 RWPMQTR---NVLLMV--V--VTIAAAF 230
           R  ++++   N LL++  V       AF
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
2etb_A	256	Transient receptor potential cation channel subfam	100.0
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	100.0
2pnn_A	273	Transient receptor potential cation channel subfa	100.0
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	100.0
3jxi_A	260	Vanilloid receptor-related osmotically activated p	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.98
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.98
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.98
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.98
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.96
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.95
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.95
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.95
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.95
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.95
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.95
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.95
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.94
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.94
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.94
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.94
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.94
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.94
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.94
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.93
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.93
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.93
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.93
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.93
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.93
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.92
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.92
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.91
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.91
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.89
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.89
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.88
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.88
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.87
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.83
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.78

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.5e-37  Score=227.87  Aligned_cols=159  Identities=25%  Similarity=0.364  Sum_probs=148.1

Q ss_pred             hHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCCh
Q 025505           18 TTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~   97 (252)
                      ++|+.||..|+.++|+.|++.|++++. .|..|.||||+|+..++.+++++|++++ .+++.+|..|.||||+|+..|+.
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~Gadvn~-~d~~g~t~l~~a~~~~~~~~~~~ll~~g-ad~~~~d~~g~TpLh~A~~~g~~   83 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENGADVNA-SDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRTPLHHAAENGHK   83 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcc-cchhhhccCCCCHHHHHHHcCCH
Confidence            479999999999999999999999998 9999999999999999999999999999 78999999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCch
Q 025505           98 DAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSA  177 (252)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  177 (252)
                      +++++|++.++      +++.+|..|+||||+|+..|+.+++++|++      .|++++.+|..|+||||+|+.    .+
T Consensus        84 ~~v~~Ll~~ga------dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~------~gad~~~~d~~G~TpL~~A~~----~g  147 (169)
T 4gpm_A           84 EVVKLLISKGA------DVNAKDSDGRTPLHHAAENGHKEVVKLLIS------KGADVNTSDSDGRTPLDLARE----HG  147 (169)
T ss_dssp             HHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TT
T ss_pred             HHHHHHHHCcC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCCCHHHHHHH----cC
Confidence            99999999999      899999999999999999999999999996      889999999999999999999    88


Q ss_pred             hHHHHHHHHHhccccCC
Q 025505          178 FKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       178 ~~~~~~~L~~~ga~~~~  194 (252)
                      +.+++++|+++||+++.
T Consensus       148 ~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          148 NEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CHHHHHHHHTC------
T ss_pred             CHHHHHHHHHCCCCcCC
Confidence            99999999999999864

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=3.5e-35  Score=230.53  Aligned_cols=176  Identities=20%  Similarity=0.226  Sum_probs=160.0

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      ++..+++.+..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++++.+++..+
T Consensus        43 l~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~  121 (253)
T 1yyh_A           43 IYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARM  121 (253)
T ss_dssp             ---------CCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCC
T ss_pred             HHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccC
Confidence            4555666677799999999999999999999999999999987 899999999999999999999999999966889999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.||||+|+..++.+++++|++.+.      +++..+..|+||||+|+..|+.+++++|++      .|++++.+|..
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~  189 (253)
T 1yyh_A          122 HDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAVNNVDAAVVLLK------NGANKDMQNNR  189 (253)
T ss_dssp             TTCCCHHHHHHHHTCSSHHHHHHHTTC------CTTCBCTTSCBHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTT
T ss_pred             CCCCcHHHHHHHcChHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCC
Confidence            999999999999999999999999998      789999999999999999999999999996      88999999999


Q ss_pred             CCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          162 GQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       162 g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |.||||+|+.    .++.+++++|+++|++++.
T Consensus       190 g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  218 (253)
T 1yyh_A          190 EETPLFLAAR----EGSYETAKVLLDHFANRDI  218 (253)
T ss_dssp             SCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCHHHHHHH----CCCHHHHHHHHHcCCCccc
Confidence            9999999998    8899999999999999875

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=1.4e-34  Score=222.55  Aligned_cols=177  Identities=20%  Similarity=0.228  Sum_probs=165.6

Q ss_pred             CcccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc
Q 025505            1 MARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKL   80 (252)
Q Consensus         1 il~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~   80 (252)
                      ||+..+++....|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|+++++..++..
T Consensus        10 Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~   88 (223)
T 2f8y_A           10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANI-QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDAR   88 (223)
T ss_dssp             TEETTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTCC
T ss_pred             HHHcCCCcccccCCCCCchHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccC
Confidence            35566676677799999999999999999999999999999987 89999999999999999999999999997688999


Q ss_pred             CCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccC
Q 025505           81 TSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (252)
Q Consensus        81 ~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  160 (252)
                      +..|.||||+|+..++.+++++|++.+.      +++..+..|+||||+|+..++.+++++|++      .|++++.+|.
T Consensus        89 ~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~  156 (223)
T 2f8y_A           89 MHDGTTPLILAARLAVEGMLEDLINSHA------DVNAVDDLGKSALHWAAAVNNVDAAVVLLK------NGANKDMQNN  156 (223)
T ss_dssp             CTTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHH------TTCCTTCCCT
T ss_pred             CCCCCcHHHHHHHhCcHHHHHHHHHcCC------CCcCcCCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCcCC
Confidence            9999999999999999999999999988      788999999999999999999999999996      7899999999


Q ss_pred             CCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          161 EGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       161 ~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .|.||||+|+.    .++.+++++|+++|++++.
T Consensus       157 ~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  186 (223)
T 2f8y_A          157 REETPLFLAAR----EGSYETAKVLLDHFANRDI  186 (223)
T ss_dssp             TCCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCcCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            99999999998    8899999999999998864

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=1e-34  Score=225.52  Aligned_cols=177  Identities=24%  Similarity=0.262  Sum_probs=163.3

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC-----ccccccCC
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICP-----ESLEKLTS   82 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-----~~~~~~~~   82 (252)
                      .++.+|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+.     ...+..+.
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNY  115 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCT
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCC
Confidence            5788999999999999999999999999999999988 89999999999999999999999999883     23577888


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCC-CCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK-EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        83 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      .|.||||+|+..++.+++++|++.++      +++..+. .|+||||+|+..|+.+++++|++      .|++++.+|..
T Consensus       116 ~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~  183 (236)
T 1ikn_D          116 NGHTCLHLASIHGYLGIVELLVSLGA------DVNAQEPCNGRTALHLAVDLQNPDLVSLLLK------CGADVNRVTYQ  183 (236)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHHTC------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT------TTCCSCCCCTT
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCcccCC
Confidence            99999999999999999999999999      7888887 99999999999999999999996      89999999999


Q ss_pred             CCCHhHhhhhcCCCchhHHHHHHHHHhccccCCCCCCCCC
Q 025505          162 GQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPADGA  201 (252)
Q Consensus       162 g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~~~~~  201 (252)
                      |.||||+|+.    .++.+++++|+++|++.....+....
T Consensus       184 g~tpl~~A~~----~~~~~~~~~Ll~~ga~~~~~~~~~~~  219 (236)
T 1ikn_D          184 GYSPYQLTWG----RPSTRIQQQLGQLTLENLQMLPESED  219 (236)
T ss_dssp             CCCGGGGCTT----SSCHHHHHHHHTTSCGGGSSCCCCCT
T ss_pred             CCCHHHHHHc----cCchHHHHHHHHcchhhhhcCCccch
Confidence            9999999998    88999999999999988765555433

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.1e-35  Score=220.48  Aligned_cols=171  Identities=19%  Similarity=0.249  Sum_probs=147.0

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      |...+..++..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.+..+++..+
T Consensus        25 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~  103 (201)
T 3hra_A           25 LQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL-QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHN  103 (201)
T ss_dssp             HTCTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCC
T ss_pred             HHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhccCccccccc
Confidence            4455556788888899999999999999999999999888887 888889999999999999999999977767888888


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHH-hcccccccccccCCCCCcHHHHHHhCCh-----HHHHHHHHhcccccceeeee
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEA-KNHRKEHLFTWKDKEGNTVLHLATLNKL-----KQIVELLIRENSNRRIMIRI  155 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-----~~~v~~Ll~~~~~~~~~~~~  155 (252)
                      ..|.||||+|+..++.+++++|++.+ .      +++..+..|+||||+|+..++     .+++++|++      .|+++
T Consensus       104 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~------~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~------~ga~~  171 (201)
T 3hra_A          104 RYGGNALIPAAEKGHIDNVKLLLEDGRE------DIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLME------NGADQ  171 (201)
T ss_dssp             TTSCCSHHHHHHTTCHHHHHHHHHHCCC------CTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHH------TTCCT
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCC------CcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHH------CCCCC
Confidence            88999999999999999999999888 5      778888889999999998877     889999995      78888


Q ss_pred             ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhc
Q 025505          156 NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAI  189 (252)
Q Consensus       156 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~g  189 (252)
                      +.+|..|.||||+|+.    .++.+++++|+++|
T Consensus       172 ~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~G  201 (201)
T 3hra_A          172 SIKDNSGRTAMDYANQ----KGYTEISKILAQYN  201 (201)
T ss_dssp             TCCCTTSCCHHHHHHH----HTCHHHHHHHHTCC
T ss_pred             CccCCCCCCHHHHHHH----cCCHhHHHHHHhcC
Confidence            8888889999999888    88889999988876

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=1.3e-34  Score=223.98  Aligned_cols=175  Identities=23%  Similarity=0.251  Sum_probs=165.3

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      +...|..++..|..|.||||+|+..|+.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|++++ .+++.++
T Consensus        26 l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~  103 (231)
T 3aji_A           26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGXDEIVKALLVKG-AHVNAVN  103 (231)
T ss_dssp             HHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHhCCCCCC-cCCCCCCHHHHHHHcCHHHHHHHHHHcC-CCCCCCC
Confidence            4556778889999999999999999999999999999999987 8999999999999999999999999999 6888999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.||||+|+..++.+++++|++.+.      +++..+..|.||||+|+..|+.+++++|++      .|++++.+|..
T Consensus       104 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~  171 (231)
T 3aji_A          104 QNGCTPLHYAASKNRHEIAVMLLEGGA------NPDAKDHYDATAMHRAAAKGNLKMVHILLF------YKASTNIQDTE  171 (231)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHh------cCCCccccCCC
Confidence            999999999999999999999999998      788899999999999999999999999996      88899999999


Q ss_pred             CCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          162 GQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       162 g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |.||||+|+.    .++.+++++|+++|++++.
T Consensus       172 g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  200 (231)
T 3aji_A          172 GNTPLHLACD----EERVEEAKFLVTQGASIYI  200 (231)
T ss_dssp             SCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             CCCHHHHHHH----CCCHHHHHHHHHCCCCCCC
Confidence            9999999998    8899999999999998864

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=4.1e-35  Score=220.74  Aligned_cols=167  Identities=17%  Similarity=0.106  Sum_probs=157.9

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      +.+++.+|..|+||||+|+..|+.+++++|++.+++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.
T Consensus        25 ~~~~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~  102 (192)
T 2rfm_A           25 DFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLED-KDIEGSTALIWAVKNNRLGIAEKLLSKG-SNVNTKDFSGK  102 (192)
T ss_dssp             HHHHTCCCTTCCCHHHHHHHHTCGGGHHHHHHHHCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTSC
T ss_pred             HHHHhCcCCCCCCHHHHHHHcCCHHHHHHHHHhcccccc-ccccCccHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCC
Confidence            345778999999999999999999999999999999887 8899999999999999999999999999 68899999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCH
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT  165 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  165 (252)
                      ||||+|+..++.+++++|++.++      +++..+..|.||||+|+..++.+++++|++      .|++++.+|..|.||
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~  170 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGA------NVNDRNLEGETPLIVASKYGRSEIVKKLLE------LGADISARDLTGLTA  170 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTC------CSSCCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCTTCBCTTSCBH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCH
Confidence            99999999999999999999998      789999999999999999999999999996      789999999999999


Q ss_pred             hHhhhhcCCCchhHHHHHHHHHhcc
Q 025505          166 LQLCNANSQDSAFKEIGWIIQRAIA  190 (252)
Q Consensus       166 l~~a~~~~~~~~~~~~~~~L~~~ga  190 (252)
                      +++|+.    .++.+++++|+++|.
T Consensus       171 l~~A~~----~~~~~~v~~Ll~~~~  191 (192)
T 2rfm_A          171 EASARI----FGRQEVIKIFTEVRR  191 (192)
T ss_dssp             HHHHHH----TTCHHHHHHHHHHHH
T ss_pred             HHHHHH----hCcHHHHHHHHhccC
Confidence            999999    889999999998863

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=2e-34  Score=229.18  Aligned_cols=173  Identities=21%  Similarity=0.248  Sum_probs=148.2

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCc----------
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE----------   75 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~----------   75 (252)
                      +..++.+|..|+||||+|+..|+.+++++|+++|++++. .+..|.||||+|+..|+.+++++|+++++.          
T Consensus        35 ~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  113 (282)
T 1oy3_D           35 HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL  113 (282)
T ss_dssp             SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----
T ss_pred             cccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHh
Confidence            344778888888888888888888888888888888877 788888899988888888888888886632          


Q ss_pred             ------------------------------------cccccCCCCchHHHHHHHcCChHHHHHHHHHHhccccccccccc
Q 025505           76 ------------------------------------SLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWK  119 (252)
Q Consensus        76 ------------------------------------~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  119 (252)
                                                          .++.++..|.||||+|+..|+.+++++|++.++      +++..
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~------~~~~~  187 (282)
T 1oy3_D          114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGA------DLNKP  187 (282)
T ss_dssp             ------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTC------CTTCC
T ss_pred             hcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCC------CCCCC
Confidence                                                245667789999999999999999999999888      77777


Q ss_pred             CCC-CCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          120 DKE-GNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       120 ~~~-g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      +.. |+||||+|+..|+.+++++|++      .|++++.+|..|+||||+|+.    .++.+++++|+++|++++..
T Consensus       188 ~~~~g~tpL~~A~~~~~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~~  254 (282)
T 1oy3_D          188 EPTCGRTPLHLAVEAQAASVLELLLK------AGADPTARMYGGRTPLGSALL----RPNPILARLLRAHGAPEPED  254 (282)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHT----SSCHHHHHHHHHTTCCCCCC
T ss_pred             CCCCCcCHHHHHHHcCCHHHHHHHHH------cCCCCcccccCCCCHHHHHHH----cCCcHHHHHHHHcCCCcCcC
Confidence            754 9999999999999999999996      788999999999999999998    88899999999999998753

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=7.4e-34  Score=209.15  Aligned_cols=163  Identities=20%  Similarity=0.220  Sum_probs=155.1

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHc
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~   94 (252)
                      .|.||||+|+..|+.++++.|++.+.+++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||+|+..
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   79 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQENVINH-TDEEGFTPLMWAAAHGQIAVVEFLLQNG-ADPQLLGKGRESALSLACSK   79 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcCCCcCC-CCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHc
Confidence            589999999999999999999999999887 8999999999999999999999999998 78899999999999999999


Q ss_pred             CChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCC
Q 025505           95 SRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ  174 (252)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  174 (252)
                      ++.+++++|++.+.      +++..+..|+||||+|+..++.+++++|++      .|++++.+|..|.||+++|+.   
T Consensus        80 ~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A~~---  144 (167)
T 3v31_A           80 GYTDIVKMLLDCGV------DVNEYDWNGGTPLLYAVHGNHVKCVKMLLE------SGADPTIETDSGYNSMDLAVA---  144 (167)
T ss_dssp             TCHHHHHHHHHHTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH---
T ss_pred             CCHHHHHHHHHCCC------CCCcCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH---
Confidence            99999999999998      789999999999999999999999999996      889999999999999999999   


Q ss_pred             CchhHHHHHHHHHhccccCCC
Q 025505          175 DSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       175 ~~~~~~~~~~L~~~ga~~~~~  195 (252)
                       .++.+++++|++++++....
T Consensus       145 -~~~~~~~~~L~~~~~~~~~~  164 (167)
T 3v31_A          145 -LGYRSVQQVIESHLLKLLQN  164 (167)
T ss_dssp             -HTCHHHHHHHHHHHHHHCSS
T ss_pred             -cCcHHHHHHHHHHHHHHHHH
Confidence             88999999999999987653

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.1e-34  Score=229.65  Aligned_cols=167  Identities=20%  Similarity=0.301  Sum_probs=127.3

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      -++.+|.+|+||||+||..|+.++|++|++.+++++. .+..|.||+|+|+..++.+++++|++.+ .+++.+|..|.||
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~~~~-~~~~g~t~l~~a~~~~~~~~~~~Ll~~g-~~~n~~d~~g~Tp  155 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHGANAGA-RNADQAVPLHLACQQGHFQVVKCLLDSN-AKPNKKDLSGNTP  155 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTCCCH
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCCcCc-cCCCCCCccccccccChHHHHHHHHHCC-CCCCCCCCCCCCH
Confidence            3667788888888888888888888888888888776 7778888888888888888888888887 6777888888888


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      ||+|+..|+.+++++|++.++      +++..+..|+||||+|+..|+.++|++|++      .|++++.+|..|+||||
T Consensus       156 L~~A~~~g~~~~v~~Ll~~ga------dvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~------~Gad~~~~d~~G~TpL~  223 (269)
T 4b93_B          156 LIYACSGGHHELVALLLQHGA------SINASNNKGNTALHEAVIEKHVFVVELLLL------HGASVQVLNKRQRTAVD  223 (269)
T ss_dssp             HHHHHHTTCGGGHHHHHHTTC------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCSGG
T ss_pred             HHHHHHCCCHHHHHHHHHCCC------CCCccccCCCcHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHH
Confidence            888888888888888888877      677888888888888888888888888885      77788888888888888


Q ss_pred             hhhhcCCCchh-HHHHHHHHHhcccc
Q 025505          168 LCNANSQDSAF-KEIGWIIQRAIAQQ  192 (252)
Q Consensus       168 ~a~~~~~~~~~-~~~~~~L~~~ga~~  192 (252)
                      +|+.    ++. .+++++|.+.++..
T Consensus       224 ~A~~----~~~i~~lL~~l~~~~~~~  245 (269)
T 4b93_B          224 CAEQ----NSKIMELLQVVPSCVASL  245 (269)
T ss_dssp             GSCT----TCHHHHHTTC--------
T ss_pred             HHHh----CCcHHHHHHHHHHhchhh
Confidence            8875    333 34455555555544

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=8.9e-34  Score=218.78  Aligned_cols=177  Identities=25%  Similarity=0.233  Sum_probs=162.1

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcC--ccccccccCCCCcHHHHHHHcCCHHHHHHHHHhC-Ccccc
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEIN--RELCLEVDNSSMIPLHRAALDGNSDVIRALVSIC-PESLE   78 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~-~~~~~   78 (252)
                      |+..++..+..|..|.||||+|+..|+.+++++|++.+  .++....+..|.||||+|+..|+.+++++|++++ ..+++
T Consensus        22 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~  101 (228)
T 2dzn_A           22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN  101 (228)
T ss_dssp             HHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTT
T ss_pred             HhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccc
Confidence            45667777889999999999999999999999999999  4444446789999999999999999999999987 35678


Q ss_pred             ccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhccccccee-eeeec
Q 025505           79 KLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIM-IRINT  157 (252)
Q Consensus        79 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~  157 (252)
                      ..+..|.||||+|+..++.+++++|++.+.      +++..+..|+||||+|+..|+.+++++|++      .| ++++.
T Consensus       102 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~  169 (228)
T 2dzn_A          102 KITNQGVTCLHLAVGKKWFEVSQFLIENGA------SVRIKDKFNQIPLHRAASVGSLKLIELLCG------LGKSAVNW  169 (228)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHT------TTCCCSCC
T ss_pred             cCCcCCCCHHHHHHHcCCHhHHHHHHHcCC------CccccCCCCCCHHHHHHHcCCHHHHHHHHh------cCcccccC
Confidence            889999999999999999999999999998      789999999999999999999999999996      66 88999


Q ss_pred             ccCCCCCHhHhhhhcCCCchhHHHHHHHH-HhccccCC
Q 025505          158 VNKEGQTTLQLCNANSQDSAFKEIGWIIQ-RAIAQQSP  194 (252)
Q Consensus       158 ~~~~g~t~l~~a~~~~~~~~~~~~~~~L~-~~ga~~~~  194 (252)
                      +|..|+||||+|+.    .++.+++++|+ ++|++++.
T Consensus       170 ~d~~g~t~L~~A~~----~~~~~~v~~Ll~~~ga~~~~  203 (228)
T 2dzn_A          170 QDKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYDL  203 (228)
T ss_dssp             CCTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSCC
T ss_pred             cCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCCCCc
Confidence            99999999999999    88999999999 99999875

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=8.9e-34  Score=225.39  Aligned_cols=175  Identities=21%  Similarity=0.257  Sum_probs=157.2

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCcc---ccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCC
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRE---LCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNG   84 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~---~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g   84 (252)
                      +++.+|+.|+||||+||..|+.++|++|++.+++   ++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|
T Consensus         1 i~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g   78 (282)
T 1oy3_D            1 VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL-QNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGG   78 (282)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTS
T ss_pred             CCCccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCcccccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCC
Confidence            3678899999999999999999999999999887   555 8889999999999999999999999999 7889999999


Q ss_pred             chHHHHHHHcCChHHHHHHHHHHhccc-----------------------------------------ccccccccCCCC
Q 025505           85 ETALHLAVKKSRSDAFEALVDEAKNHR-----------------------------------------KEHLFTWKDKEG  123 (252)
Q Consensus        85 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~-----------------------------------------~~~~~~~~~~~g  123 (252)
                      .||||+|+..++.+++++|++.++...                                         ...+++..+..|
T Consensus        79 ~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  158 (282)
T 1oy3_D           79 HTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDG  158 (282)
T ss_dssp             CCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTS
T ss_pred             CCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCC
Confidence            999999999999999999998664311                                         011467788999


Q ss_pred             CcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC-CCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE-GQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       124 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~-g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +||||+|+..|+.+++++|++      .|++++..+.. |.||||+|+.    .++.+++++|+++|++++.
T Consensus       159 ~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~~~~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~  220 (282)
T 1oy3_D          159 HTPLHVAVIHKDAEMVRLLRD------AGADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTA  220 (282)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             cCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCcCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            999999999999999999996      88899998854 9999999999    8899999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=100.00  E-value=8.6e-34  Score=207.67  Aligned_cols=159  Identities=21%  Similarity=0.238  Sum_probs=147.7

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHH
Q 025505           14 QRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (252)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~   93 (252)
                      +...||||+|+..|+.+++++|++.+.+++. .+..|.||||+|+. |+.+++++|++++ .+++.++..|.||||+|+.
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~   79 (162)
T 1ihb_A            3 EPWGNELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMKL-GNPEIARRLLLRG-ANPDLKDRTGFAVIHDAAR   79 (162)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCCS-SCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHH
T ss_pred             chHhhHHHHHHHcCCHHHHHHHHhCCCCccc-cCccCccHHHHHHc-CcHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHH
Confidence            4678999999999999999999999999987 89999999999999 9999999999998 7889999999999999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeee-eecccCCCCCHhHhhhhc
Q 025505           94 KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR-INTVNKEGQTTLQLCNAN  172 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~-~~~~~~~g~t~l~~a~~~  172 (252)
                      .++.+++++|++.+.      +++.++..|+||||+|+..++.+++++|++      .|.+ ++.+|..|.||||+|+. 
T Consensus        80 ~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~~g~t~l~~A~~-  146 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQA------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK------HTASNVGHRNHKGDTACDLARL-  146 (162)
T ss_dssp             HTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------HSCCCTTCCCTTSCCHHHHHHH-
T ss_pred             cCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH------ccCCCCCCcCCCCCcHHHHHHH-
Confidence            999999999999998      789999999999999999999999999996      6666 58999999999999999 


Q ss_pred             CCCchhHHHHHHHHHhccc
Q 025505          173 SQDSAFKEIGWIIQRAIAQ  191 (252)
Q Consensus       173 ~~~~~~~~~~~~L~~~ga~  191 (252)
                         .++.+++++|+++||+
T Consensus       147 ---~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          147 ---YGRNEVVSLMQANGAG  162 (162)
T ss_dssp             ---TTCHHHHHHHHHTC--
T ss_pred             ---cCCHHHHHHHHHhCCC
Confidence               8899999999999985

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=5e-33  Score=216.25  Aligned_cols=173  Identities=22%  Similarity=0.227  Sum_probs=153.1

Q ss_pred             CccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCc---cccccC
Q 025505            5 WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE---SLEKLT   81 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~---~~~~~~   81 (252)
                      .+..++..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.++.   +++..+
T Consensus        35 ~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~  113 (241)
T 1k1a_A           35 GGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMA-LDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARN  113 (241)
T ss_dssp             TTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCC
T ss_pred             cCCCCCcccccCCCHHHHHHHcCCHHHHHHHHHcCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccC
Confidence            4555778888899999999999999999999999888877 788899999999999999999999988742   667788


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccC-CCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  160 (252)
                      ..|.||||+|+..++.+++++|++.+.      +++..+ ..|.||||+|+..++.+++++|++      .|++++.+|.
T Consensus       114 ~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~  181 (241)
T 1k1a_A          114 YDGLTALHVAVNTECQETVQLLLERGA------DIDAVDIKSGRSPLIHAVENNSLSMVQLLLQ------HGANVNAQMY  181 (241)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCBCT
T ss_pred             cCCCcHHHHHHHcCCHHHHHHHHHcCC------CcccccccCCCcHHHHHHHcCCHHHHHHHHH------cCCCCCCcCC
Confidence            889999999999999999999999888      677777 789999999999999999999996      7889999999


Q ss_pred             CCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          161 EGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       161 ~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .|.||||+|+.    .++.+++++|+++|++++.
T Consensus       182 ~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  211 (241)
T 1k1a_A          182 SGSSALHSASG----RGLLPLVRTLVRSGADSSL  211 (241)
T ss_dssp             TSCBHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCCCHHHHHHH----cCCHHHHHHHHhcCCCCCC
Confidence            99999999998    8899999999999999875

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.1e-33  Score=207.25  Aligned_cols=162  Identities=23%  Similarity=0.310  Sum_probs=149.7

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHH
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALH   89 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   89 (252)
                      ......+.|+|++|+..|+.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||
T Consensus         8 ~~~~~~~~~~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~   85 (169)
T 2y1l_E            8 HHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA-EDASGWTPLHLAAFNGHLEIVEVLLKNG-ADVNAVDHAGMTPLR   85 (169)
T ss_dssp             -----CHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             ccCCCcccchHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHH
Confidence            34556788999999999999999999999999987 8999999999999999999999999998 788999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhh
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC  169 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a  169 (252)
                      +|+..++.+++++|++.++      +++..|..|+||||+|+..++.+++++|++      .|++++.+|..|.||+++|
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~t~l~~A  153 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGA------DVNANDMEGHTPLHLAAMFGHLEIVEVLLK------NGADVNAQDKFGKTAFDIS  153 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHH
Confidence            9999999999999999998      788999999999999999999999999996      8899999999999999999


Q ss_pred             hhcCCCchhHHHHHHHHHhc
Q 025505          170 NANSQDSAFKEIGWIIQRAI  189 (252)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~~g  189 (252)
                      +.    .++.+++++|+++|
T Consensus       154 ~~----~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          154 ID----NGNEDLAEILQKLN  169 (169)
T ss_dssp             HH----TTCHHHHHHHHTC-
T ss_pred             HH----hCCHHHHHHHHHcC
Confidence            98    88999999999876

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=4.1e-33  Score=214.43  Aligned_cols=171  Identities=17%  Similarity=0.191  Sum_probs=159.6

Q ss_pred             cccccccCCCChHHHHHHhCCCHHHHHHHhhcCc-cccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            7 QLASIKNQRGETTMHLLSTDGDAETVRIFGEINR-ELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      ..++..|..|.||||+|+..|+.+++++|++.++ +++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|.
T Consensus        49 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~  126 (223)
T 2f8y_A           49 ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDA-RMHDGTTPLILAARLAVEGMLEDLINSH-ADVNAVDDLGK  126 (223)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCTTSC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccc-CCCCCCcHHHHHHHhCcHHHHHHHHHcC-CCCcCcCCCCC
Confidence            3467889999999999999999999999999987 5555 8899999999999999999999999998 68899999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCH
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT  165 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  165 (252)
                      ||||+|+..++.+++++|++.++      +++..+..|.||||+|+..++.+++++|++      .|++++.+|..|.||
T Consensus       127 t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~  194 (223)
T 2f8y_A          127 SALHWAAAVNNVDAAVVLLKNGA------NKDMQNNREETPLFLAAREGSYETAKVLLD------HFANRDITDHMDRLP  194 (223)
T ss_dssp             BHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTCCCH
T ss_pred             cHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCcCHHHHHHHcCCHHHHHHHHH------cCCCCccccccCCCH
Confidence            99999999999999999999998      788999999999999999999999999996      888999999999999


Q ss_pred             hHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          166 LQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       166 l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      +++|+.    .++.+++++|+++|+...+.
T Consensus       195 l~~A~~----~~~~~i~~~L~~~g~~~~~~  220 (223)
T 2f8y_A          195 RDIAQE----RMHHDIVRLLDEYNLVRSPQ  220 (223)
T ss_dssp             HHHHHH----TTCHHHHHHHHHTTCSSCC-
T ss_pred             HHHHHH----hcchHHHHHHHHcCCCcccc
Confidence            999999    88999999999999988753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=100.00  E-value=7.3e-33  Score=226.51  Aligned_cols=181  Identities=19%  Similarity=0.214  Sum_probs=160.0

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      |...+..++.+|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++..+
T Consensus        44 l~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~iv~~Ll~~g-~~~~~~~  121 (351)
T 3utm_A           44 LTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHA-KDKGGLVPLHNACSYGHYEVTELLLKHG-ACVNAMD  121 (351)
T ss_dssp             CCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCcHHHHHHHCCCHHHHHHHHHCC-CCCCCCC
Confidence            4445666788899999999999999999999999999999987 8999999999999999999999999998 7888899


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhccc--------------------------------------------------
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHR--------------------------------------------------  111 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~--------------------------------------------------  111 (252)
                      ..|.||||+|+..++.+++++|++.+++..                                                  
T Consensus       122 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  201 (351)
T 3utm_A          122 LWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALE  201 (351)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhh
Confidence            999999999999999999999998765421                                                  


Q ss_pred             ----------------------------------ccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeec
Q 025505          112 ----------------------------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT  157 (252)
Q Consensus       112 ----------------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  157 (252)
                                                        ...+++..+..|+||||+|+..|+.+++++|++      .|++++.
T Consensus       202 ~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~n~  275 (351)
T 3utm_A          202 IINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHK------HGAKMNA  275 (351)
T ss_dssp             CTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTC
T ss_pred             cccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCC
Confidence                                              112456678889999999999999999999996      8889999


Q ss_pred             ccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          158 VNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       158 ~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +|..|+||||+|+.    .++.+++++|+++|++++.
T Consensus       276 ~d~~g~t~L~~A~~----~~~~~~v~~Ll~~gad~~~  308 (351)
T 3utm_A          276 LDSLGQTALHRAAL----AGHLQTCRLLLSYGSDPSI  308 (351)
T ss_dssp             CCTTSCCHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCCCCHHHHHHH----cCcHHHHHHHHHcCCCCCC
Confidence            99999999999998    8899999999999998765

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=4.2e-33  Score=206.05  Aligned_cols=162  Identities=21%  Similarity=0.248  Sum_probs=151.6

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcC
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~   95 (252)
                      +.||||+|+..|+.++++.|++.+.+.....+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   80 (172)
T 3v30_A            2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG-ADPHILAKERESALSLASTGG   80 (172)
T ss_dssp             --CCHHHHHHTTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTT
T ss_pred             chhhHHHHHHcCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCchhhcccCCCHHHHHHHCC
Confidence            5789999999999999999999998844448999999999999999999999999999 788999999999999999999


Q ss_pred             ChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCC
Q 025505           96 RSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD  175 (252)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~  175 (252)
                      +.+++++|++.+.      +++..+..|+||||+|+..++.+++++|++      .|++++.+|..|.||||+|+.    
T Consensus        81 ~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~----  144 (172)
T 3v30_A           81 YTDIVGLLLERDV------DINIYDWNGGTPLLYAVRGNHVKCVEALLA------RGADLTTEADSGYTPMDLAVA----  144 (172)
T ss_dssp             CHHHHHHHHTTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----
T ss_pred             CHHHHHHHHHcCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCCCHHHHHHH----
Confidence            9999999999998      789999999999999999999999999996      889999999999999999999    


Q ss_pred             chhHHHHHHHHHhccccCC
Q 025505          176 SAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       176 ~~~~~~~~~L~~~ga~~~~  194 (252)
                      .++.+++++|+++|++...
T Consensus       145 ~~~~~~~~~L~~~~~~~~~  163 (172)
T 3v30_A          145 LGYRKVQQVIENHILKLFQ  163 (172)
T ss_dssp             HTCHHHHHHHHHHHHHHSC
T ss_pred             hCcHHHHHHHHHHHHHHhc
Confidence            8899999999999998865

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=4.2e-33  Score=215.48  Aligned_cols=168  Identities=22%  Similarity=0.209  Sum_probs=159.1

Q ss_pred             cccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCch
Q 025505            7 QLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET   86 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   86 (252)
                      ..++..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.|
T Consensus        64 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t  141 (231)
T 3aji_A           64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYDAT  141 (231)
T ss_dssp             CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCc
Confidence            34678899999999999999999999999999999987 8999999999999999999999999999 688899999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHh
Q 025505           87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL  166 (252)
Q Consensus        87 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l  166 (252)
                      |||+|+..++.+++++|++.+.      +++.++..|+||||+|+..++.+++++|++      .|++++.+|..|+||+
T Consensus       142 ~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l  209 (231)
T 3aji_A          142 AMHRAAAKGNLKMVHILLFYKA------STNIQDTEGNTPLHLACDEERVEEAKFLVT------QGASIYIENKEEKTPL  209 (231)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCHH
T ss_pred             HHHHHHHcCCHHHHHHHHhcCC------CccccCCCCCCHHHHHHHCCCHHHHHHHHH------CCCCCCCCCCCCCCHH
Confidence            9999999999999999999998      789999999999999999999999999996      8899999999999999


Q ss_pred             HhhhhcCCCchhHHHHHHHHHhcccc
Q 025505          167 QLCNANSQDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~L~~~ga~~  192 (252)
                      ++|..    .++.+++++|.++|+++
T Consensus       210 ~~A~~----~~~~~i~~lL~~~~a~i  231 (231)
T 3aji_A          210 QVAKG----GLGLILKRLAEGEEASM  231 (231)
T ss_dssp             HHSCH----HHHHHHHHHHHHHHHCC
T ss_pred             HHHHh----hHHHHHHHHHccccccC
Confidence            99998    88999999999999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=7.2e-33  Score=214.99  Aligned_cols=169  Identities=18%  Similarity=0.186  Sum_probs=143.4

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++.++..++..+..|.|||
T Consensus        37 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L  115 (237)
T 3b7b_A           37 IDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDP-KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPM  115 (237)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCC-CCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHH
T ss_pred             cCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHH
Confidence            566777888888888888888888888888888776 7778888888888888888888888887667777888888888


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHh
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      |+|+..++.+++++|++.+.      +++..+..|.||||+|+..|+.+++++|++      .|++++.+|..|.||||+
T Consensus       116 ~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~  183 (237)
T 3b7b_A          116 IWATEYKHVDLVKLLLSKGS------DINIRDNEENICLHWAAFSGCVDIAEILLA------AKCDLHAVNIHGDSPLHI  183 (237)
T ss_dssp             HHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHHCCHHHHHHHHT------TTCCTTCCCTTCCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHHCCC------CCCccCCCCCCHHHHHHHCCCHHHHHHHHH------cCCCCCCcCCCCCCHHHH
Confidence            88888888888888888887      778888889999999999999999999995      788888888899999999


Q ss_pred             hhhcCCCchhHHHHHHHHHhccccCC
Q 025505          169 CNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       169 a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+.    .++.+++++|+++|++++.
T Consensus       184 A~~----~~~~~~v~~Ll~~gad~~~  205 (237)
T 3b7b_A          184 AAR----ENRYDCVVLFLSRDSDVTL  205 (237)
T ss_dssp             HHH----TTCHHHHHHHHTTTCCTTC
T ss_pred             HHH----hCCHhHHHHHHHcCCCCCc
Confidence            988    7888999999999988765

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.7e-32  Score=212.24  Aligned_cols=162  Identities=22%  Similarity=0.221  Sum_probs=146.3

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccc----cccCCCCchHHH
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESL----EKLTSNGETALH   89 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~----~~~~~~g~t~L~   89 (252)
                      .|+||||+|+..|+.++++.|++. +.+++. .+..|.||||+|+..|+.+++++|+++++...    +..+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQ-RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTTCSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            589999999999999999999998 889887 89999999999999999999999999984322    556789999999


Q ss_pred             HHHHcCChHHHHHHHHHHhcccccccccccCC-------------CCCcHHHHHHhCChHHHHHHHHhcccccceeeeee
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK-------------EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRIN  156 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-------------~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~  156 (252)
                      +|+..|+.+++++|++.++      +++..+.             .|+||||+|+..|+.+++++|++      .|++++
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~------~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~  148 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGA------SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIE------HGADIR  148 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTC------CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHH------TTCCTT
T ss_pred             HHHHcCCHHHHHHHHhCCC------CCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHH------CCCCCC
Confidence            9999999999999999998      4555544             79999999999999999999996      889999


Q ss_pred             cccCCCCCHhHhhhhcCCCchhHHHH----HHHHHhccccC
Q 025505          157 TVNKEGQTTLQLCNANSQDSAFKEIG----WIIQRAIAQQS  193 (252)
Q Consensus       157 ~~~~~g~t~l~~a~~~~~~~~~~~~~----~~L~~~ga~~~  193 (252)
                      .+|..|+||||+|+.    .++.+++    ++|+++|++..
T Consensus       149 ~~d~~g~t~L~~A~~----~~~~~~~~~i~~~Ll~~g~~~~  185 (232)
T 2rfa_A          149 AQDSLGNTVLHILIL----QPNKTFACQMYNLLLSYDGGDH  185 (232)
T ss_dssp             CCCTTSCCHHHHHHT----CSCHHHHHHHHHHHHHTTCSCS
T ss_pred             CCCCCCCCHHHHHHH----cCChHHHHHHHHHHHhcCCchh
Confidence            999999999999998    6677766    99999999775

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=1.4e-33  Score=221.31  Aligned_cols=170  Identities=21%  Similarity=0.254  Sum_probs=126.2

Q ss_pred             cccccCCCChHHHHHHhCC-------------CHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCc
Q 025505            9 ASIKNQRGETTMHLLSTDG-------------DAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPE   75 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g-------------~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~   75 (252)
                      ++.+|..|.||||+|+..|             +.++++.|++.|+++....+..|.||||+|+..|+.+++++|++++ .
T Consensus         3 vn~~d~~g~tpL~~A~~~g~~~~~~~~~~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~   81 (253)
T 1yyh_A            3 VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEAS-A   81 (253)
T ss_dssp             -------------------------------------------------CCCTTSCCHHHHHHHTTCHHHHHHHHHTT-C
T ss_pred             CCCCCCCCCcHHHHHHhccccccccchhhcCCChHHHHHHHHccCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC-C
Confidence            6788999999999999987             8999999999999997757899999999999999999999999999 7


Q ss_pred             cccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeee
Q 025505           76 SLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRI  155 (252)
Q Consensus        76 ~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  155 (252)
                      +++.++..|.||||+|+..++.+++++|++.+..     +++..+..|.||||+|+..++.+++++|++      .|+++
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~  150 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNRAT-----DLDARMHDGTTPLILAARLAVEGMLEDLIN------SHADV  150 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTS-----CTTCCCTTCCCHHHHHHHHTCSSHHHHHHH------TTCCT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC-----CccccCCCCCcHHHHHHHcChHHHHHHHHH------cCCCC
Confidence            8899999999999999999999999999998763     678889999999999999999999999996      88999


Q ss_pred             ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          156 NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       156 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +.+|..|.||||+|+.    .++.+++++|+++|++++.
T Consensus       151 ~~~d~~g~t~L~~A~~----~~~~~~v~~Ll~~ga~~~~  185 (253)
T 1yyh_A          151 NAVDDLGKSALHWAAA----VNNVDAAVVLLKNGANKDM  185 (253)
T ss_dssp             TCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             CCcCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            9999999999999999    8899999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=4.5e-33  Score=204.53  Aligned_cols=161  Identities=22%  Similarity=0.255  Sum_probs=145.6

Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHH
Q 025505           12 KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLA   91 (252)
Q Consensus        12 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a   91 (252)
                      .|..|.||||.|+..|+.++++.|++.+.......+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A   82 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG-ADVHAKDKGGLVPLHNA   82 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcC-CCCCccCCCCCCHHHHH
Confidence            47789999999999999999999999655333337888999999999999999999999999 78899999999999999


Q ss_pred             HHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505           92 VKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus        92 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      +..++.+++++|++.++      +++..|..|+||||+|+..++.+++++|++      .|++++.+|..|.||+|+|. 
T Consensus        83 ~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~a~-  149 (165)
T 3twr_A           83 CSYGHYEVAELLVKHGA------VVNVADLWKFTPLHEAAAKGKYEICKLLLQ------HGADPTKKNRDGNTPLDLVK-  149 (165)
T ss_dssp             HHTTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCTGGGSC-
T ss_pred             HHcCcHHHHHHHHhCCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCcccCCCCCChhHhHh-
Confidence            99999999999999998      789999999999999999999999999996      88999999999999999987 


Q ss_pred             cCCCchhHHHHHHHHHhcc
Q 025505          172 NSQDSAFKEIGWIIQRAIA  190 (252)
Q Consensus       172 ~~~~~~~~~~~~~L~~~ga  190 (252)
                          .++.+++++|++.|+
T Consensus       150 ----~~~~~i~~~L~~~gA  164 (165)
T 3twr_A          150 ----DGDTDIQDLLRGDAA  164 (165)
T ss_dssp             ----TTCHHHHHHHHTC--
T ss_pred             ----cCChHHHHHHhhccc
Confidence                567799999999886

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=100.00  E-value=1.5e-33  Score=221.47  Aligned_cols=166  Identities=20%  Similarity=0.204  Sum_probs=152.2

Q ss_pred             ccCCCChHHHHHHhC---CCHHHHHHHhhcCcccccc----------ccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc
Q 025505           12 KNQRGETTMHLLSTD---GDAETVRIFGEINRELCLE----------VDNSSMIPLHRAALDGNSDVIRALVSICPESLE   78 (252)
Q Consensus        12 ~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~~~----------~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~   78 (252)
                      .|..|+||||+|+..   |+.+++++|++.|++.+..          .|..|.||||+|+..|+.+++++|++++ .+++
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~  117 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENG-ADVH  117 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCTT
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcC-CCCC
Confidence            799999999999999   9999999999999876531          2467999999999999999999999998 6788


Q ss_pred             ccCCC-------------CchHHHHHHHcCChHHHHHHHH---HHhcccccccccccCCCCCcHHHHHHh--CChHH---
Q 025505           79 KLTSN-------------GETALHLAVKKSRSDAFEALVD---EAKNHRKEHLFTWKDKEGNTVLHLATL--NKLKQ---  137 (252)
Q Consensus        79 ~~~~~-------------g~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~--~~~~~---  137 (252)
                      .++..             |.||||+|+..|+.+++++|++   .++      +++.+|..|+||||+|+.  .++.+   
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga------~~n~~d~~g~TpLh~A~~~~~~~~~~~~  191 (256)
T 2etb_A          118 LRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPA------SLEATDSLGNTVLHALVMIADNSPENSA  191 (256)
T ss_dssp             CCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSCHHHHH
T ss_pred             cccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC------CcCccCCCCCCHHHHHHHcccCCchhhH
Confidence            88776             9999999999999999999999   888      899999999999999998  78888   


Q ss_pred             ----HHHHHHhcccccceeeee-------ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          138 ----IVELLIRENSNRRIMIRI-------NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       138 ----~v~~Ll~~~~~~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                          ++++|++      .|+++       +.+|..|+||||+|+.    .++.+++++|+++|++...
T Consensus       192 ~~~~iv~~Ll~------~ga~~~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~g~~~~~  249 (256)
T 2etb_A          192 LVIHMYDGLLQ------MGARLCPTVQLEEISNHQGLTPLKLAAK----EGKIEIFRHILQREFSGAA  249 (256)
T ss_dssp             HHHHHHHHHHH------HHHHHSTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------cCCCcccccccccccCCCCCCHHHHHHH----hCCHHHHHHHHhCCCCCCC
Confidence                9999996      88888       8999999999999999    8899999999999998753

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=100.00  E-value=4.3e-33  Score=221.31  Aligned_cols=165  Identities=21%  Similarity=0.283  Sum_probs=155.3

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCc-cccccccCCCCcHHHHHH-----HcCCHHHHHHHHHhCCccccccC
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINR-ELCLEVDNSSMIPLHRAA-----LDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~Lh~A~-----~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      .++.+|..|+||||+||..|+.+++++|++.|+ +++. .+..|.||||+|+     ..++.+++++|++.+ ......+
T Consensus       103 ~~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~-~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g-~~~~~~~  180 (276)
T 4hbd_A          103 VVNIADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDK-QNRAGYSPIMLTALATLKTQDDIETVLQLFRLG-NINAKAS  180 (276)
T ss_dssp             HHTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTC-CCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS-CTTCCCT
T ss_pred             cCcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCC-CCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC-CCccccC
Confidence            378899999999999999999999999999998 7776 8999999999999     678999999999999 6778889


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.||||+|+..|+.+++++|++.++      +++.+|..|+||||+|+..|+.+++++|++     ..|++++.+|..
T Consensus       181 ~~g~tpLh~A~~~g~~~~v~~Ll~~ga------d~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~-----~~gad~~~~d~~  249 (276)
T 4hbd_A          181 QAGQTALMLAVSHGRVDVVKALLACEA------DVNVQDDDGSTALMCACEHGHKEIAGLLLA-----VPSCDISLTDRD  249 (276)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHT-----STTCCTTCCCTT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHhCCC------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHh-----cCCCCCcCcCCC
Confidence            999999999999999999999999999      899999999999999999999999999996     479999999999


Q ss_pred             CCCHhHhhhhcCCCchhHHHHHHHHHhc
Q 025505          162 GQTTLQLCNANSQDSAFKEIGWIIQRAI  189 (252)
Q Consensus       162 g~t~l~~a~~~~~~~~~~~~~~~L~~~g  189 (252)
                      |+||||+|+.    .++.+++++|++++
T Consensus       250 g~TpL~~A~~----~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          250 GSTALMVALD----AGQSEIASMLYSRM  273 (276)
T ss_dssp             SCCHHHHHHH----HTCHHHHHHHHHHC
T ss_pred             CCCHHHHHHH----cCCHHHHHHHHhcc
Confidence            9999999999    88999999999875

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=2.2e-32  Score=203.54  Aligned_cols=163  Identities=20%  Similarity=0.243  Sum_probs=150.8

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHhhcCc-cccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           14 QRGETTMHLLSTDGDAETVRIFGEINR-ELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      +.+.++||.||..|+.++++.|++.+. +++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNTENDLNQ-GDDHGFSPLHWACREGRSAVVEMLIMRG-ARINVMNRGDDTPLHLAA   80 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCTTSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcCcccccc-cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence            468899999999999999999999854 4555 8999999999999999999999999998 788999999999999999


Q ss_pred             HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhc
Q 025505           93 KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN  172 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~  172 (252)
                      ..++.+++++|++.++      +++..|..|.||||+|+..++.+++++|++      .|++++.+|..|.||+++|.. 
T Consensus        81 ~~~~~~~v~~Ll~~g~------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~tpl~~A~~-  147 (179)
T 3f6q_A           81 SHGHRDIVQKLLQYKA------DINAVNEHGNVPLHYACFWGQDQVAEDLVA------NGALVSICNKYGEMPVDKAKA-  147 (179)
T ss_dssp             HTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSSBCCTTSCCGGGGSCH-
T ss_pred             HcCCHHHHHHHHHcCC------CCCccCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCcchhccCCCCcHHHHHH-
Confidence            9999999999999998      889999999999999999999999999996      889999999999999999998 


Q ss_pred             CCCchhHHHHHHHHHhccccCC
Q 025505          173 SQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       173 ~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                         .++.+++++|+++|++.+.
T Consensus       148 ---~~~~~~~~~L~~~g~~~~~  166 (179)
T 3f6q_A          148 ---PLRELLRERAEKMGQNLNR  166 (179)
T ss_dssp             ---HHHHHHHHHHHHTTCCCSC
T ss_pred             ---HHHHHHHHHHHHhhcCccc
Confidence               8999999999999999975

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.4e-33  Score=220.96  Aligned_cols=169  Identities=21%  Similarity=0.179  Sum_probs=133.5

Q ss_pred             ccccccCCCChHHHHHHhCCCH-HHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCch
Q 025505            8 LASIKNQRGETTMHLLSTDGDA-ETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET   86 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~-~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   86 (252)
                      .++..|..|.|||++|+..++. .+++.|++.|++++. .|..|+||||+|+..|+.+++++|++.+ .+++..+..|.|
T Consensus        44 ~~~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~Gadvn~-~d~~G~TpLh~A~~~g~~~~v~~Ll~~~-a~~~~~~~~g~t  121 (269)
T 4b93_B           44 TVSAADPEFCHPLCQCPKCAPAQKRLAKVPASGLGVNV-TSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAV  121 (269)
T ss_dssp             -------------------------------CCCCTTC-CCTTSCCHHHHHHHTTCTTHHHHHHHTT-CCTTCCCTTCCC
T ss_pred             cccccCccCCCHHHHHHHhCCHHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHhcC-CCcCccCCCCCC
Confidence            4677888999999999988875 488999999999988 8999999999999999999999999999 788999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHh
Q 025505           87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL  166 (252)
Q Consensus        87 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l  166 (252)
                      |+|+|+..++.+++++|++.++      +++.+|..|+||||+|+..|+.+++++|++      .|++++.++..|.|||
T Consensus       122 ~l~~a~~~~~~~~~~~Ll~~g~------~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~------~gadvn~~~~~g~t~L  189 (269)
T 4b93_B          122 PLHLACQQGHFQVVKCLLDSNA------KPNKKDLSGNTPLIYACSGGHHELVALLLQ------HGASINASNNKGNTAL  189 (269)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC------CSCCCCTTCCCHHHHHHHTTCGGGHHHHHH------TTCCTTCBCTTSCBHH
T ss_pred             ccccccccChHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHCCCHHHHHHHHH------CCCCCCccccCCCcHH
Confidence            9999999999999999999998      889999999999999999999999999996      8899999999999999


Q ss_pred             HhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          167 QLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       167 ~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+|+.    .++.+++++|+++|++++.
T Consensus       190 h~A~~----~g~~~~v~~Ll~~Gad~~~  213 (269)
T 4b93_B          190 HEAVI----EKHVFVVELLLLHGASVQV  213 (269)
T ss_dssp             HHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             HHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            99999    8899999999999999875

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=100.00  E-value=1.7e-32  Score=218.94  Aligned_cols=164  Identities=15%  Similarity=0.150  Sum_probs=117.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++.+|..|.||||+|+..|+.+++++|++.|++++. .  +|.||||+|+..|+.+++++|++++ .+++.++..|.|||
T Consensus        24 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~--~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~t~L   99 (285)
T 3kea_A           24 TFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNL-L--ENEFPLHQAATLEDTKIVKILLFSG-LDDSQFDDKGNTAL   99 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTGGGSC-C--TTCCHHHHHTTSSSCHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             CCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC-C--CCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcHH
Confidence            677888888899998888888888888888888765 3  4888888888888888888888888 67778888888888


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCC-CcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEG-NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g-~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      |+|+..|+.+++++|++.++      +++..+..| .||||+|+..|+.+++++|++.+      .+.... ..|.||||
T Consensus       100 ~~A~~~g~~~~v~~Ll~~ga------~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g------~~~~~~-~~g~t~L~  166 (285)
T 3kea_A          100 YYAVDSGNMQTVKLFVKKNW------RLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEI------PSTFDL-AILLSCIH  166 (285)
T ss_dssp             HHHHHTTCHHHHHHHHHHCG------GGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTS------CTTCCC-STHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHhcCC------CCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCC------Cccccc-cCCccHHH
Confidence            88888888888888888887      566666666 57777766666666666666522      222100 14445555


Q ss_pred             hhhhcCCCchhHHHHHHHHHhccccC
Q 025505          168 LCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       168 ~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      +|+.    .++.+++++|+++|++++
T Consensus       167 ~A~~----~g~~~~v~~Ll~~gad~n  188 (285)
T 3kea_A          167 ITIK----NGHVDMMILLLDYMTSTN  188 (285)
T ss_dssp             HHHH----TTCHHHHHHHHHHHHHTC
T ss_pred             HHHH----cChHHHHHHHHHcCCCCC
Confidence            5444    444445555554444444

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=2.8e-32  Score=217.61  Aligned_cols=166  Identities=16%  Similarity=0.115  Sum_probs=137.5

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++.+|..|+||||+|+..|+.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.|||
T Consensus        52 ~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~t~L  129 (285)
T 3d9h_A           52 LMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNI-ITADHVSPLHEACLGGHLSCVKILLKHG-AQVNGVTADWHTPL  129 (285)
T ss_dssp             TCSSSCCSCCHHHHHHHTTCHHHHHHHHHTTCCSCE-ECTTCCCHHHHHHHTTCHHHHHHHHHTT-CCSSCCCTTCCCHH
T ss_pred             ccCCCccCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHCCcHHHHHHHHHCC-CCCCCCCCCCCCHH
Confidence            567788999999999999999999999999988887 8888999999999999999999999988 67888889999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHh
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      |+|+..++.+++++|++.+.      +++. +..|.||||+|+..|+.+++++|++      .|++++.+|..|.||||+
T Consensus       130 ~~A~~~~~~~~v~~Ll~~g~------~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~~~~~~d~~g~t~L~~  196 (285)
T 3d9h_A          130 FNACVSGSWDCVNLLLQHGA------SVQP-ESDLASPIHEAARRGHVECVNSLIA------YGGNIDHKISHLGTPLYL  196 (285)
T ss_dssp             HHHHHHTCHHHHHHHHHTTC------CSSC-SCTTSCHHHHHHHHTCHHHHHHHHH------TTCCTTCCBTTTBCHHHH
T ss_pred             HHHHHcCHHHHHHHHHHCCC------CCCC-CCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHH
Confidence            99999999999999998887      4443 3347788888888777788888775      667777777777777777


Q ss_pred             hhhcCCCchhHHHHHHHHHhccccC
Q 025505          169 CNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       169 a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      |+.    .++.+++++|++.|++++
T Consensus       197 A~~----~~~~~~v~~Ll~~ga~~~  217 (285)
T 3d9h_A          197 ACE----NQQRACVKKLLESGADVN  217 (285)
T ss_dssp             HHH----TTCHHHHHHHHHTTCCTT
T ss_pred             HHH----cCcHHHHHHHHHCCCCCC
Confidence            777    677777777777777765

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=3.5e-32  Score=211.08  Aligned_cols=169  Identities=20%  Similarity=0.258  Sum_probs=158.8

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++..|..|.||||+|+..|+.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.|||
T Consensus         4 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L   81 (237)
T 3b7b_A            4 FKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDT-CSEDQRTPLMEAAENNHLEAVKYLIKAG-ALVDPKDAEGSTCL   81 (237)
T ss_dssp             CCCSSCCSCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCCCCCCTTSCCHH
T ss_pred             cccccCCCCCHHHHHHHcCcHHHHHHHHHcCCCcCc-cCCCCCCHHHHHHHhCCHHHHHHHHhCC-CCCCCCCCCCCcHH
Confidence            567889999999999999999999999999999987 8899999999999999999999999998 67888999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHh
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      |+|+..++.+++++|++.+..     +++..+..|.||||+|+..++.+++++|++      .|++++.++..|.||||+
T Consensus        82 ~~A~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~  150 (237)
T 3b7b_A           82 HLAAKKGHYEVVQYLLSNGQM-----DVNCQDDGGWTPMIWATEYKHVDLVKLLLS------KGSDINIRDNEENICLHW  150 (237)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCCC-----CcccCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCccCCCCCCHHHH
Confidence            999999999999999998832     788889999999999999999999999996      888999999999999999


Q ss_pred             hhhcCCCchhHHHHHHHHHhccccCC
Q 025505          169 CNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       169 a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+.    .++.+++++|++.|++++.
T Consensus       151 A~~----~~~~~~~~~Ll~~g~~~~~  172 (237)
T 3b7b_A          151 AAF----SGCVDIAEILLAAKCDLHA  172 (237)
T ss_dssp             HHH----HCCHHHHHHHHTTTCCTTC
T ss_pred             HHH----CCCHHHHHHHHHcCCCCCC
Confidence            998    8899999999999998865

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=100.00  E-value=4.5e-32  Score=216.47  Aligned_cols=167  Identities=19%  Similarity=0.201  Sum_probs=154.6

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      -++.+|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++. +..|.||
T Consensus        84 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~-~~~g~t~  160 (285)
T 3d9h_A           84 AVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG-VTADWHTPLFNACVSGSWDCVNLLLQHG-ASVQP-ESDLASP  160 (285)
T ss_dssp             CSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCCSSC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSSC-SCTTSCH
T ss_pred             CCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCHHHHHHHHHHCC-CCCCC-CCCCCCH
Confidence            3778899999999999999999999999999999987 8999999999999999999999999998 44544 4459999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      ||+|+..|+.+++++|++.+.      +++..+..|+||||+|+..++.+++++|++      .|++++. +..|.||||
T Consensus       161 L~~A~~~g~~~~v~~Ll~~g~------~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~-~~~g~t~L~  227 (285)
T 3d9h_A          161 IHEAARRGHVECVNSLIAYGG------NIDHKISHLGTPLYLACENQQRACVKKLLE------SGADVNQ-GKGQDSPLH  227 (285)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC------CTTCCBTTTBCHHHHHHHTTCHHHHHHHHH------TTCCTTC-CBTTBCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHH------CCCCCCC-CCCCCCHHH
Confidence            999999999999999999998      789999999999999999999999999996      7778874 889999999


Q ss_pred             hhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          168 LCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       168 ~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +|+.    .++.+++++|+++|++++.
T Consensus       228 ~A~~----~~~~~~v~~Ll~~gad~~~  250 (285)
T 3d9h_A          228 AVVR----TASEELACLLMDFGADTQA  250 (285)
T ss_dssp             HHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             HHHH----cCCHHHHHHHHHCCCCCCC
Confidence            9999    8899999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=100.00  E-value=9e-33  Score=219.05  Aligned_cols=167  Identities=19%  Similarity=0.197  Sum_probs=147.5

Q ss_pred             cccCCCChHHHHHHhC---CCHHHHHHHhhcCcccc-------c---cccCCCCcHHHHHHHcCCHHHHHHHHHhCCccc
Q 025505           11 IKNQRGETTMHLLSTD---GDAETVRIFGEINRELC-------L---EVDNSSMIPLHRAALDGNSDVIRALVSICPESL   77 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~---g~~~~v~~Ll~~~~~~~-------~---~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~   77 (252)
                      ..|..|+||||+|+..   |+.+++++|++.|++..       .   ..+..|.||||+|+..|+.+++++|++++ .++
T Consensus        49 ~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g-a~~  127 (273)
T 2pnn_A           49 KDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENG-ADV  127 (273)
T ss_dssp             SCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTT-CCT
T ss_pred             ccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCC-CCc
Confidence            4588999999999987   99999999999986532       1   14568999999999999999999999998 677


Q ss_pred             cccCC--------------CCchHHHHHHHcCChHHHHHHHH---HHhcccccccccccCCCCCcHHHHHHhCCh-----
Q 025505           78 EKLTS--------------NGETALHLAVKKSRSDAFEALVD---EAKNHRKEHLFTWKDKEGNTVLHLATLNKL-----  135 (252)
Q Consensus        78 ~~~~~--------------~g~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-----  135 (252)
                      +.++.              .|.||||+|+..|+.+++++|++   .++      +++.+|..|+||||+|+..++     
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga------d~~~~d~~g~tpLh~A~~~~~~~~~~  201 (273)
T 2pnn_A          128 QAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPA------DISARDSVGNTVLHALVEVADNTVDN  201 (273)
T ss_dssp             TCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSCHHH
T ss_pred             CccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCC------CceeeCCCCCcHHHHHHHccCcchhH
Confidence            88776              79999999999999999999999   888      899999999999999999887     


Q ss_pred             ----HHHHHHHHhcccccceeeeee-------cccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcc-ccCC
Q 025505          136 ----KQIVELLIRENSNRRIMIRIN-------TVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIA-QQSP  194 (252)
Q Consensus       136 ----~~~v~~Ll~~~~~~~~~~~~~-------~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga-~~~~  194 (252)
                          .+++++|++      .|++++       .+|..|.||||+|+.    .++.+++++|+++|+ ++..
T Consensus       202 ~~~~~~~v~~Ll~------~ga~~n~~~~~~~~~d~~g~TpL~~A~~----~g~~~iv~~Ll~~ga~dp~~  262 (273)
T 2pnn_A          202 TKFVTSMYNEILI------LGAKLHPTLKLEEITNRKGLTPLALAAS----SGKIGVLAYILQREIHEPEC  262 (273)
T ss_dssp             HHHHHHHHHHHHH------HHHHHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHH------hhhhcccccccccccCCCCCCHHHHHHH----hChHHHHHHHHHCCCCCchh
Confidence                799999996      788886       489999999999999    889999999999999 4443

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.6e-33  Score=217.51  Aligned_cols=173  Identities=21%  Similarity=0.264  Sum_probs=151.9

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHHHhhcCc----cccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRIFGEINR----ELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~----~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      +.+|.+|.||||+|+..|+.++++.|++.+.    +++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.
T Consensus         2 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~   79 (236)
T 1ikn_D            2 QQLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGN   79 (236)
T ss_dssp             -----CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCC
T ss_pred             CcCCCCCCchhHHHHHcCChhHHHHHHHHhhccHHHhhc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCC
Confidence            3578999999999999999999999999876    5665 8889999999999999999999999998 78899999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccC-CCCC
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK-EGQT  164 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t  164 (252)
                      ||||+|+..++.+++++|++.+........++..+..|.||||+|+..|+.+++++|++      .|++++.++. .|.|
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~~g~t  153 (236)
T 1ikn_D           80 TPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS------LGADVNAQEPCNGRT  153 (236)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCC
T ss_pred             CHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCC
Confidence            99999999999999999999987433333567888999999999999999999999996      8899999997 9999


Q ss_pred             HhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          165 TLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       165 ~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |||+|+.    .++.+++++|+++|++++.
T Consensus       154 pL~~A~~----~~~~~~v~~Ll~~ga~~~~  179 (236)
T 1ikn_D          154 ALHLAVD----LQNPDLVSLLLKCGADVNR  179 (236)
T ss_dssp             HHHHHHH----TTCHHHHHHHHTTTCCSCC
T ss_pred             HHHHHHH----cCCHHHHHHHHHcCCCCCc
Confidence            9999999    8899999999999999875

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=100.00  E-value=9.5e-32  Score=209.02  Aligned_cols=173  Identities=25%  Similarity=0.333  Sum_probs=153.6

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhh----cCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCC
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGE----INRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSN   83 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~   83 (252)
                      +++.+|++|+||||+||..|+.+++++|++    .+.+++. .+..|.||||+|+..|+.+++++|++++ .+++..+..
T Consensus         1 l~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~   78 (241)
T 1k1a_A            1 MATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRH   78 (241)
T ss_dssp             ------CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTT
T ss_pred             CccccCCCCCcHHHHHHHcCCHHHHHHHHHHHHhcCCCCCc-ccccCCCHHHHHHHcCCHHHHHHHHHcC-CCccccCCC
Confidence            467889999999999999999999999997    6788877 8999999999999999999999999999 788899999


Q ss_pred             CchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeeccc-CCC
Q 025505           84 GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KEG  162 (252)
Q Consensus        84 g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g  162 (252)
                      |.||||+|+..++.+++++|++.+...  ..+++..+..|.||||+|+..++.+++++|++      .|++++..+ ..|
T Consensus        79 g~t~l~~A~~~~~~~~~~~Ll~~~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~~g  150 (241)
T 1k1a_A           79 GQTAAHLACEHRSPTCLRALLDSAAPG--TLDLEARNYDGLTALHVAVNTECQETVQLLLE------RGADIDAVDIKSG  150 (241)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHSCTT--SCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTTC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCc--cccccccCcCCCcHHHHHHHcCCHHHHHHHHH------cCCCcccccccCC
Confidence            999999999999999999999997621  11567788999999999999999999999996      888899888 789


Q ss_pred             CCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          163 QTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       163 ~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .||||+|+.    .++.+++++|+++|++++.
T Consensus       151 ~t~L~~A~~----~~~~~~v~~Ll~~g~~~~~  178 (241)
T 1k1a_A          151 RSPLIHAVE----NNSLSMVQLLLQHGANVNA  178 (241)
T ss_dssp             CCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CcHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            999999998    8899999999999998865

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=100.00  E-value=6.8e-33  Score=218.14  Aligned_cols=166  Identities=20%  Similarity=0.206  Sum_probs=148.2

Q ss_pred             cCCCChHHHHHH---hCCCHHHHHHHhhcCccccc----------cccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 025505           13 NQRGETTMHLLS---TDGDAETVRIFGEINRELCL----------EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEK   79 (252)
Q Consensus        13 d~~g~t~L~~A~---~~g~~~~v~~Ll~~~~~~~~----------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~   79 (252)
                      |..|.||||+|+   ..|+.+++++|++.+++...          ..|..|.||||+|+..|+.+++++|++++ .+++.
T Consensus        43 ~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~  121 (260)
T 3jxi_A           43 PSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKG-ADVHA  121 (260)
T ss_dssp             TTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTT-CCTTC
T ss_pred             cCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCC-CCcCc
Confidence            477999999999   78999999999998865211          13458999999999999999999999998 67888


Q ss_pred             cC--------------CCCchHHHHHHHcCChHHHHHHHH---HHhcccccccccccCCCCCcHHHHHHhCCh-------
Q 025505           80 LT--------------SNGETALHLAVKKSRSDAFEALVD---EAKNHRKEHLFTWKDKEGNTVLHLATLNKL-------  135 (252)
Q Consensus        80 ~~--------------~~g~t~L~~a~~~~~~~~~~~Ll~---~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-------  135 (252)
                      .+              ..|.||||+|+..|+.+++++|++   .++      +++.+|..|+||||+|+..++       
T Consensus       122 ~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga------~~~~~d~~g~TpLh~A~~~~~~~~~~~~  195 (260)
T 3jxi_A          122 QARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQA------DLRRQDSRGNTVLHALVAIADNTRENTK  195 (260)
T ss_dssp             CCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCC------CTTCCCTTSCCHHHHHHHHCCSSHHHHH
T ss_pred             cccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCC------CCcccCCCCCcHHHHHHHhccCchhHHH
Confidence            87              689999999999999999999999   788      899999999999999998776       


Q ss_pred             --HHHHHHHHhcccccceeeee-------ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          136 --KQIVELLIRENSNRRIMIRI-------NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       136 --~~~v~~Ll~~~~~~~~~~~~-------~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                        .+++++|++      .|+++       +.+|..|.||||+|+.    .++.+++++|+++|++....
T Consensus       196 ~~~~~v~~Ll~------~ga~~~~~~~~~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~g~~~~~~  254 (260)
T 3jxi_A          196 FVTKMYDLLLI------KCAKLFPDTNLEALLNNDGLSPLMMAAK----TGKIGIFQHIIRREIADAAA  254 (260)
T ss_dssp             HHHHHHHHHHH------HHHHHCTTCCGGGCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHH------hCcccccccchhhcccCCCCCHHHHHHH----cCCHHHHHHHHHhCCCcccc
Confidence              699999996      77887       6799999999999999    89999999999999988753

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.98  E-value=4.2e-32  Score=196.97  Aligned_cols=151  Identities=24%  Similarity=0.252  Sum_probs=143.1

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcC
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~   95 (252)
                      ..|+|+.|+..|+.+++++|++.|.+..  .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+..+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~   78 (153)
T 1awc_B            2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHT
T ss_pred             ccHHHHHHHHcCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHHHcC
Confidence            4689999999999999999999999775  6889999999999999999999999998 678999999999999999999


Q ss_pred             ChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCC
Q 025505           96 RSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD  175 (252)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~  175 (252)
                      +.+++++|++.++      +++..|..|+||||+|+..++.+++++|++      .|++++.+|..|.||+|+|+.    
T Consensus        79 ~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~----  142 (153)
T 1awc_B           79 HANIVEVLLKHGA------DVNAKDMLKMTALHWATEHNHQEVVELLIK------YGADVHTQSKFCKTAFDISID----  142 (153)
T ss_dssp             CHHHHHHHHTTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----
T ss_pred             hHHHHHHHHHcCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCccccCCCCCCHHHHHHH----
Confidence            9999999999998      789999999999999999999999999996      789999999999999999999    


Q ss_pred             chhHHHHHHH
Q 025505          176 SAFKEIGWII  185 (252)
Q Consensus       176 ~~~~~~~~~L  185 (252)
                      .++.+++++|
T Consensus       143 ~~~~~i~~~L  152 (153)
T 1awc_B          143 NGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHHh
Confidence            8899999987

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.98  E-value=1.8e-31  Score=212.10  Aligned_cols=171  Identities=20%  Similarity=0.221  Sum_probs=112.1

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccc---------cCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEV---------DNSSMIPLHRAALDGNSDVIRALVSICPESLEK   79 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~---------~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~   79 (252)
                      ++..|..|.||||+|+..|+.+++++|++.+++++...         +..|.||||+|+..|+.+++++|++....+++.
T Consensus        98 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~  177 (285)
T 1wdy_A           98 VNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA  177 (285)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTC
T ss_pred             CCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCc
Confidence            34455555555555555555555555555555554311         445556666666666666666666552255555


Q ss_pred             cCCCCchHHHHHHHcCC----hHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeee
Q 025505           80 LTSNGETALHLAVKKSR----SDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRI  155 (252)
Q Consensus        80 ~~~~g~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  155 (252)
                      .+..|.||||+|+..++    .+++++|++.+.      +++.++..|+||||+|+..++.+++++|++     ..|+++
T Consensus       178 ~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~~g~~~  246 (285)
T 1wdy_A          178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHGA------DVNVRGERGKTPLILAVEKKHLGLVQRLLE-----QEHIEI  246 (285)
T ss_dssp             CCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTC------CSSCCCTTSCCHHHHHHHTTCHHHHHHHHH-----SSSCCT
T ss_pred             cCCCCCCHHHHHHHccccchHHHHHHHHHHcCC------CCCCcCCCCCcHHHHHHHcCCHHHHHHHHh-----ccCCCc
Confidence            66666666666666666    556666666665      666777777788888888777788887775     467777


Q ss_pred             ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          156 NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       156 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +.+|..|+||||+|+.    .++.+++++|+++|++++.
T Consensus       247 ~~~~~~g~t~l~~A~~----~~~~~i~~~Ll~~Ga~~~~  281 (285)
T 1wdy_A          247 NDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             TCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             cccCCCCCcHHHHHHH----cCcHHHHHHHHHcCCCCCc
Confidence            7777788888888777    6777888888888877754

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.98  E-value=5.4e-32  Score=223.05  Aligned_cols=170  Identities=22%  Similarity=0.281  Sum_probs=80.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHh----CCccccc-----
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSI----CPESLEK-----   79 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~----~~~~~~~-----   79 (252)
                      ++.+|..|.||||+||..|+.++|++|++.+++...   ..|.||||+|+..|+.+++++|++.    + ..++.     
T Consensus        46 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~---~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~-~~~~~~~~~~  121 (364)
T 3ljn_A           46 PTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSL---WHGQKPIHLAVMANKTDLVVALVEGAKERG-QMPESLLNEC  121 (364)
T ss_dssp             TTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCC---BTTBCHHHHHHHTTCHHHHHHHHHHHHHHT-CCHHHHHTCC
T ss_pred             ccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccc---cCCCCHHHHHHHcCCHHHHHHHHHhccccC-CCHHHHHhhc
Confidence            455566666666666666666666666666653321   1233333333333333333333332    1 11111     


Q ss_pred             ------------cCCCCchHHHHHHHcC--ChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhc
Q 025505           80 ------------LTSNGETALHLAVKKS--RSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE  145 (252)
Q Consensus        80 ------------~~~~g~t~L~~a~~~~--~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  145 (252)
                                  .+..|.||||+|+..|  +.+++++|++.++      +++..|..|+||||+|+..|+.+++++|++.
T Consensus       122 ~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga------~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~  195 (364)
T 3ljn_A          122 DEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGA------SPTAKDKADETPLMRAMEFRNREALDLMMDT  195 (364)
T ss_dssp             CCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                        4444555555555555  5555555555555      4444455555555555555555555555531


Q ss_pred             ccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          146 NSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       146 ~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      ++. ..+.+++..|..|.||||+|+.    .++.+++++|+++|++++
T Consensus       196 g~~-~~~~~~~~~~~~g~t~L~~A~~----~g~~~~v~~Ll~~gad~~  238 (364)
T 3ljn_A          196 VPS-KSSLRLDYANKQGNSHLHWAIL----INWEDVAMRFVEMGIDVN  238 (364)
T ss_dssp             CSC-SSSCCTTCCCTTCCCTTHHHHT----TTCHHHHHHHHTTTCCTT
T ss_pred             ccc-cccccccccCCCCCcHHHHHHH----cCCHHHHHHHHHcCCCCC
Confidence            111 0111144455555555555544    444555555555555443

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.98  E-value=6.1e-32  Score=222.76  Aligned_cols=170  Identities=18%  Similarity=0.184  Sum_probs=152.6

Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHhhc----Cccccc----------------cccCCCCcHHHHHHHcC--CHHHHHHH
Q 025505           12 KNQRGETTMHLLSTDGDAETVRIFGEI----NRELCL----------------EVDNSSMIPLHRAALDG--NSDVIRAL   69 (252)
Q Consensus        12 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~~----------------~~~~~g~t~Lh~A~~~g--~~~~v~~L   69 (252)
                      .+..|.||||+|+..|+.+++++|++.    +.+++.                ..+..|.||||+|+..|  +.+++++|
T Consensus        80 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~L  159 (364)
T 3ljn_A           80 SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKIL  159 (364)
T ss_dssp             CCBTTBCHHHHHHHTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHH
T ss_pred             cccCCCCHHHHHHHcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHH
Confidence            345899999999999999999999998    555442                15678999999999999  99999999


Q ss_pred             HHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhccccc
Q 025505           70 VSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR  149 (252)
Q Consensus        70 l~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~  149 (252)
                      ++++ .+++.++..|.||||+|+..|+.+++++|++.+++. ...+++..+..|+||||+|+..|+.+++++|++     
T Consensus       160 l~~g-a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~-~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~-----  232 (364)
T 3ljn_A          160 VQLG-ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSK-SSLRLDYANKQGNSHLHWAILINWEDVAMRFVE-----  232 (364)
T ss_dssp             HHHT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCS-SSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHT-----
T ss_pred             HHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhccccc-ccccccccCCCCCcHHHHHHHcCCHHHHHHHHH-----
Confidence            9998 789999999999999999999999999999999821 000288999999999999999999999999996     


Q ss_pred             ceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          150 RIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       150 ~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                       .|++++.+|..|.||||+|+.    .++.+++++|+++|++..
T Consensus       233 -~gad~~~~d~~g~tpL~~A~~----~g~~~~v~~Ll~~~~~~~  271 (364)
T 3ljn_A          233 -MGIDVNMEDNEHTVPLYLSVR----AAMVLLTKELLQKTDVFL  271 (364)
T ss_dssp             -TTCCTTCCCTTSCCHHHHHHH----TCCHHHHHHHHHHSCHHH
T ss_pred             -cCCCCCCCCCCCCCHHHHHHH----hChHHHHHHHHHcCCchh
Confidence             899999999999999999999    889999999999998864

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1.4e-31  Score=214.63  Aligned_cols=170  Identities=21%  Similarity=0.262  Sum_probs=133.2

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      +..|.||||+||..|+.++|+.|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||+|+
T Consensus        37 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~tpL~~A~  114 (299)
T 1s70_B           37 KFDDGAVFLAACSSGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIPLHAAA  114 (299)
T ss_dssp             EECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred             ccCCccHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHH
Confidence            44566777777777777777777777777766 6777777777777777777777777777 566777777777777777


Q ss_pred             HcCChHHHHHHHHHHhcccccc------------------------------------------------------cccc
Q 025505           93 KKSRSDAFEALVDEAKNHRKEH------------------------------------------------------LFTW  118 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~------------------------------------------------------~~~~  118 (252)
                      ..|+.+++++|++.+++.+...                                                      ....
T Consensus       115 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  194 (299)
T 1s70_B          115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVR  194 (299)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred             HcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhh
Confidence            7777777777777765322000                                                      0111


Q ss_pred             cCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       119 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .+..|.||||+|+..|+.+++++|++      .|++++.+|..|.||||+|+.    .++.+++++|+++|++++.
T Consensus       195 ~~~~g~t~L~~A~~~g~~~~v~~Ll~------~g~d~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~gad~~~  260 (299)
T 1s70_B          195 HAKSGGTALHVAAAKGYTEVLKLLIQ------ARYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEA  260 (299)
T ss_dssp             CTTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             hcCCCCCHHHHHHHCCcHHHHHHHHH------cCCCCCCcCCCCCcHHHHHHh----cCCHHHHHHHHHcCCCCCC
Confidence            34578899999999999999999996      889999999999999999999    8899999999999999875

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=8.9e-32  Score=222.56  Aligned_cols=180  Identities=17%  Similarity=0.160  Sum_probs=159.0

Q ss_pred             CccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC--ccccccCC
Q 025505            5 WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICP--ESLEKLTS   82 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~--~~~~~~~~   82 (252)
                      .+..++.+|..|.||||+|+..|+.++|++|++.|++++. .+..|.||||+|+..|+.+++++|++++.  .+++..+.
T Consensus       155 ~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~  233 (373)
T 2fo1_E          155 AGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTI-YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR  233 (373)
T ss_dssp             TCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCT
T ss_pred             cCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcc-cCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCC
Confidence            3445788999999999999999999999999999999987 89999999999999999999999999763  46788899


Q ss_pred             CCchHHHHHHHcC---ChHHHHHHHHHHhcccccc--cccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeec
Q 025505           83 NGETALHLAVKKS---RSDAFEALVDEAKNHRKEH--LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT  157 (252)
Q Consensus        83 ~g~t~L~~a~~~~---~~~~~~~Ll~~~~~~~~~~--~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  157 (252)
                      .|.||||+|+..+   +.+++++|++.+++.+...  ..+..+..|+||||+|+..|+.+++++|++     ..+++++.
T Consensus       234 ~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~-----~~~~~~n~  308 (373)
T 2fo1_E          234 NGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVG-----EKGSNKDK  308 (373)
T ss_dssp             TSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHH-----HSCCCTTC
T ss_pred             CCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHH-----hcCCCccC
Confidence            9999999999998   8999999999998322100  122367789999999999999999999997     34599999


Q ss_pred             ccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          158 VNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       158 ~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +|..|.||||+|+.    .++.+++++|+++|++++.
T Consensus       309 ~d~~g~TpL~~A~~----~g~~~iv~~Ll~~gad~~~  341 (373)
T 2fo1_E          309 QDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEA  341 (373)
T ss_dssp             CCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             cCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCccC
Confidence            99999999999999    8899999999999999875

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=6.4e-31  Score=198.96  Aligned_cols=169  Identities=17%  Similarity=0.149  Sum_probs=151.4

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCc-cccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINR-ELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLA   91 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a   91 (252)
                      +..+.||||.|+..|+.+.++.|+..+. +++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|.||||+|
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~l~~A   79 (201)
T 3hra_A            2 KTYEVGALLEAANQRDTKKVKEILQDTTYQVDE-VDTEGNTPLNIAVHNNDIEIAKALIDRG-ADINLQNSISDSPYLYA   79 (201)
T ss_dssp             -CCCTTHHHHHHHTTCHHHHHHHHTCTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHH
T ss_pred             CcccccHHHHHHHhccHHHHHHHHHcCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence            4678999999999999999999999887 7766 8899999999999999999999999999 78899999999999999


Q ss_pred             HHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhccccccee-eeeecccCCCCCHhHhhh
Q 025505           92 VKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIM-IRINTVNKEGQTTLQLCN  170 (252)
Q Consensus        92 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~-~~~~~~~~~g~t~l~~a~  170 (252)
                      +..++.+++++|++.+..     +++..+..|.||||+|+..++.+++++|++      .+ ++++.+|..|.||||+|+
T Consensus        80 ~~~~~~~~~~~Ll~~~~~-----~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~~g~t~L~~A~  148 (201)
T 3hra_A           80 GAQGRTEILAYMLKHATP-----DLNKHNRYGGNALIPAAEKGHIDNVKLLLE------DGREDIDFQNDFGYTALIEAV  148 (201)
T ss_dssp             HHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCSHHHHHHTTCHHHHHHHHH------HCCCCTTCCCTTSCCHHHHHH
T ss_pred             HHcCCHHHHHHHHhccCc-----ccccccCCCCcHHHHHHHcCCHHHHHHHHH------cCCCCcCCCCCCCCCHHHHHH
Confidence            999999999999966542     788899999999999999999999999997      55 899999999999999998


Q ss_pred             hcCC-CchhHHHHHHHHHhccccCC
Q 025505          171 ANSQ-DSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       171 ~~~~-~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ..+. ..++.+++++|+++|++++.
T Consensus       149 ~~~~~~~~~~~~v~~Ll~~ga~~~~  173 (201)
T 3hra_A          149 GLREGNQLYQDIVKLLMENGADQSI  173 (201)
T ss_dssp             HSSCCSHHHHHHHHHHHHTTCCTTC
T ss_pred             HhccchhhHHHHHHHHHHCCCCCCc
Confidence            7322 12238999999999999875

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=4.2e-31  Score=203.76  Aligned_cols=163  Identities=18%  Similarity=0.170  Sum_probs=149.3

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC-ccccc-cCCCCchHHHHHHH
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICP-ESLEK-LTSNGETALHLAVK   93 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~~-~~~~g~t~L~~a~~   93 (252)
                      |+||||+||..|+.++++.|++.+++.....+..|.||||+|+..|+.+++++|+++++ .++.. .+..|.||||+|+.
T Consensus         2 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~   81 (228)
T 2dzn_A            2 SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   81 (228)
T ss_dssp             -CCHHHHHHHTTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CccHHHHHHHhCCHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHH
Confidence            78999999999999999999999998876689999999999999999999999999982 23344 78899999999999


Q ss_pred             cCChHHHHHHHHHH--hcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505           94 KSRSDAFEALVDEA--KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~--~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      .++.+++++|++.+  .      +++..+..|.||||+|+..++.+++++|++      .|++++.+|..|.||||+|+.
T Consensus        82 ~~~~~~~~~Ll~~g~~~------~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~L~~A~~  149 (228)
T 2dzn_A           82 VGNLEVVKSLYDRPLKP------DLNKITNQGVTCLHLAVGKKWFEVSQFLIE------NGASVRIKDKFNQIPLHRAAS  149 (228)
T ss_dssp             HCCHHHHHHHHSSSSCC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCc------ccccCCcCCCCHHHHHHHcCCHhHHHHHHH------cCCCccccCCCCCCHHHHHHH
Confidence            99999999999988  5      788889999999999999999999999996      789999999999999999998


Q ss_pred             cCCCchhHHHHHHHHHhc-cccCC
Q 025505          172 NSQDSAFKEIGWIIQRAI-AQQSP  194 (252)
Q Consensus       172 ~~~~~~~~~~~~~L~~~g-a~~~~  194 (252)
                          .++.+++++|++.| ++.+.
T Consensus       150 ----~~~~~~v~~Ll~~g~~~~~~  169 (228)
T 2dzn_A          150 ----VGSLKLIELLCGLGKSAVNW  169 (228)
T ss_dssp             ----TTCHHHHHHHHTTTCCCSCC
T ss_pred             ----cCCHHHHHHHHhcCcccccC
Confidence                88999999999999 76654

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.97  E-value=2.4e-31  Score=195.78  Aligned_cols=137  Identities=23%  Similarity=0.355  Sum_probs=125.9

Q ss_pred             cccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCch
Q 025505            7 QLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET   86 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   86 (252)
                      .-++.+|..|+||||+|+..++.++++.|++.|++++. .+..|+||||+|+..|+.+++++|++++ .+++.+|..|.|
T Consensus        28 advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad~~~-~d~~g~TpLh~A~~~g~~~~v~~Ll~~g-advn~~d~~G~T  105 (169)
T 4gpm_A           28 ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNA-KDSDGRTPLHHAAENGHKEVVKLLISKG-ADVNAKDSDGRT  105 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhh-hccCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCC
Confidence            34788999999999999999999999999999999988 9999999999999999999999999999 789999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeec
Q 025505           87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINT  157 (252)
Q Consensus        87 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~  157 (252)
                      |||+|+..|+.+++++|++.++      +++.+|..|+||||+|+..|+.+++++|++      +|++++-
T Consensus       106 pLh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~------~GA~ie~  164 (169)
T 4gpm_A          106 PLHHAAENGHKEVVKLLISKGA------DVNTSDSDGRTPLDLAREHGNEEVVKLLEK------QGGWLEH  164 (169)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHT------C------
T ss_pred             HHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCcCC
Confidence            9999999999999999999999      889999999999999999999999999996      7777653

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=1.7e-31  Score=194.32  Aligned_cols=153  Identities=18%  Similarity=0.187  Sum_probs=142.9

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHc
Q 025505           16 GETTMHLLSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~   94 (252)
                      +.||||+|+..|+.++++.|++. +.+++. .+..|.||||+ +..|+.+++++|++++ .+++.++..|.||||+|+..
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~~~~g~t~L~~-~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~   78 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQV-MMFGSTAIALELLKQG-ASPNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHTTCCCTTC-CCTTSCCHHHH-SCTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             cchHHHHHHHhCCHHHHHHHHHhhCcCccc-cCCCCCcHHHH-HHcCCHHHHHHHHHCC-CCCCCcCCCCCCHHHHHHHc
Confidence            67999999999999999999998 236666 88999999999 9999999999999998 78899999999999999999


Q ss_pred             CChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCC
Q 025505           95 SRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQ  174 (252)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~  174 (252)
                      |+.+++++|++.++      +++.+|..|+||||+|+..|+.+++++|++      . ++++.+|..|.||||+|+.   
T Consensus        79 ~~~~~v~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~------~-~~~~~~~~~g~t~l~~A~~---  142 (156)
T 1bd8_A           79 GFLDTLKVLVEHGA------DVNVPDGTGALPIHLAVQEGHTAVVSFLAA------E-SDLHRRDARGLTPLELALQ---  142 (156)
T ss_dssp             TCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHHTCHHHHHHHHT------T-SCTTCCCTTSCCHHHHHHH---
T ss_pred             CcHHHHHHHHHcCC------CCCCcCCCCCcHHHHHHHhChHHHHHHHHh------c-cCCCCcCCCCCCHHHHHHH---
Confidence            99999999999998      789999999999999999999999999996      5 8899999999999999999   


Q ss_pred             CchhHHHHHHHHHh
Q 025505          175 DSAFKEIGWIIQRA  188 (252)
Q Consensus       175 ~~~~~~~~~~L~~~  188 (252)
                       .++.+++++|+++
T Consensus       143 -~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          143 -RGAQDLVDILQGH  155 (156)
T ss_dssp             -SCCHHHHHHHHTT
T ss_pred             -cCcHHHHHHHHhh
Confidence             8899999999864

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=4.4e-31  Score=222.64  Aligned_cols=168  Identities=19%  Similarity=0.250  Sum_probs=141.7

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++..+..|.||||+|+..|+.+++++|++.+.+++. .+..|.||||+|+..|+.+++++|++++ .+++..+..|.|||
T Consensus       205 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~g~~~~v~~Ll~~~-~~~~~~~~~g~t~L  282 (437)
T 1n11_A          205 PHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANA-ESVQGVTPLHLAAQEGHAEMVALLLSKQ-ANGNLGNKSGLTPL  282 (437)
T ss_dssp             SCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTCCCHH
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHCCCHHHHHHHHhcC-CCCCCCCCCCCCHH
Confidence            445566777777777777777777777777777765 6777888888888888888888888887 56777888888888


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHh
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      |+|+..++.+++++|++.+.      +++..+..|+||||+|+..|+.+++++|++      .|++++.+|..|.||||+
T Consensus       283 ~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~gad~n~~~~~g~t~L~~  350 (437)
T 1n11_A          283 HLVAQEGHVPVADVLIKHGV------MVDATTRMGYTPLHVASHYGNIKLVKFLLQ------HQADVNAKTKLGYSPLHQ  350 (437)
T ss_dssp             HHHHHHTCHHHHHHHHHHTC------CTTCCCSSCCCHHHHHHHSSCSHHHHHHHH------TTCCTTCCCTTSCCHHHH
T ss_pred             HHHHHcCCHHHHHHHHhCCc------cCCCCCCCCCCHHHHHHHcCcHHHHHHHHh------cCCCCCCCCCCCCCHHHH
Confidence            88888888888888888888      788889999999999999999999999996      788999999999999999


Q ss_pred             hhhcCCCchhHHHHHHHHHhccccCC
Q 025505          169 CNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       169 a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+.    .++.+++++|+++|++++.
T Consensus       351 A~~----~g~~~iv~~Ll~~ga~~~~  372 (437)
T 1n11_A          351 AAQ----QGHTDIVTLLLKNGASPNE  372 (437)
T ss_dssp             HHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             HHH----CChHHHHHHHHHCcCCCCC
Confidence            998    8889999999999998875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=9.9e-31  Score=207.78  Aligned_cols=179  Identities=17%  Similarity=0.179  Sum_probs=154.3

Q ss_pred             ccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCC
Q 025505            3 RLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTS   82 (252)
Q Consensus         3 ~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~   82 (252)
                      +..+++....+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++..+.
T Consensus        26 ~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~  103 (285)
T 1wdy_A           26 EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL-RKKNGATPFLLAAIAGSVKLLKLFLSKG-ADVNECDF  103 (285)
T ss_dssp             HTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCBCT
T ss_pred             HcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCc
Confidence            344554334488899999999999999999999999999987 8999999999999999999999999998 67889999


Q ss_pred             CCchHHHHHHHcCChHHHHHHHHHHhccccccccccc----------CCCCCcHHHHHHhCChHHHHHHHHhccccccee
Q 025505           83 NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWK----------DKEGNTVLHLATLNKLKQIVELLIRENSNRRIM  152 (252)
Q Consensus        83 ~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~----------~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~  152 (252)
                      .|.||||+|+..++.+++++|++.+.      +++..          +..|.||||+|+..|+.+++++|++     ..+
T Consensus       104 ~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~-----~~~  172 (285)
T 1wdy_A          104 YGFTAFMEAAVYGKVKALKFLYKRGA------NVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLD-----EMG  172 (285)
T ss_dssp             TCCBHHHHHHHTTCHHHHHHHHHTTC------CTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHH-----TSC
T ss_pred             ccCCHHHHHHHhCCHHHHHHHHHhCC------CcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHH-----hcC
Confidence            99999999999999999999999988      45544          7788999999999999999999997     448


Q ss_pred             eeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          153 IRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       153 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ++++..|..|.||||+|+..+......+++++|+++|++++.
T Consensus       173 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~  214 (285)
T 1wdy_A          173 ADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNV  214 (285)
T ss_dssp             CCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSC
T ss_pred             CCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCC
Confidence            888888889999999988733322237899999999988764

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=9.4e-31  Score=220.63  Aligned_cols=169  Identities=18%  Similarity=0.200  Sum_probs=130.0

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      .++..+..|.||||+||..|+.++|++|+++|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g~~~~~-~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~   83 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTP   83 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTTCCSCC-SSSCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTSCCH
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHhCC-CCCCCCCCCCCCH
Confidence            3567888899999999999999999999998888877 7888889999999999999999999988 6778888889999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      ||+|+..|+.+++++|++.++      +++..+..|.||||+|+..|+.+++++|++      .+.+.+..+..|.||||
T Consensus        84 L~~A~~~g~~~~v~~Ll~~ga------~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~~~~~~~~~~~g~t~L~  151 (437)
T 1n11_A           84 LHCAARIGHTNMVKLLLENNA------NPNLATTAGHTPLHIAAREGHVETVLALLE------KEASQACMTKKGFTPLH  151 (437)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTC------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH------TTCCSCCCCTTSCCHHH
T ss_pred             HHHHHHCCCHHHHHHHHhCCC------CCCCCCCCCCcHHHHHHHcCCHHHHHHHHh------CCCCCcCCCCCCCCHHH
Confidence            999999999999999998888      667777777788887777777777777775      55566666667777777


Q ss_pred             hhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          168 LCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       168 ~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +|+.    .++.+++++|+++|++++.
T Consensus       152 ~A~~----~g~~~~v~~Ll~~g~~~~~  174 (437)
T 1n11_A          152 VAAK----YGKVRVAELLLERDAHPNA  174 (437)
T ss_dssp             HHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             HHHH----cCCHHHHHHHHhCCCCCCC
Confidence            7766    6667777777777766554

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=6.7e-31  Score=206.34  Aligned_cols=165  Identities=18%  Similarity=0.163  Sum_probs=143.8

Q ss_pred             CCChHHHHHHhCCCHH----HHHHHhhcCccccc---cccCCCCcHHHHHHHc---CCHHHHHHHHHhCCccccc-----
Q 025505           15 RGETTMHLLSTDGDAE----TVRIFGEINRELCL---EVDNSSMIPLHRAALD---GNSDVIRALVSICPESLEK-----   79 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~----~v~~Ll~~~~~~~~---~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~-----   79 (252)
                      .|+||||+|+..|+.+    ++++|++.+.+++.   ..+..|.||||+|+..   |+.+++++|++.+ .+++.     
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g-~~~~~~~~~~   79 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQID-KDSGNPKPLV   79 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHH-HHTTCSSCGG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcC-Ccccchhhhc
Confidence            4899999999999997    66777788998875   4689999999999999   9999999999988 44332     


Q ss_pred             ------cCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCC-------------CCcHHHHHHhCChHHHHH
Q 025505           80 ------LTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE-------------GNTVLHLATLNKLKQIVE  140 (252)
Q Consensus        80 ------~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-------------g~t~Lh~A~~~~~~~~v~  140 (252)
                            .|..|.||||+|+..|+.+++++|++.++      +++..+..             |.||||+|+..|+.++++
T Consensus        80 ~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga------~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~  153 (256)
T 2etb_A           80 NAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGA------DVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVT  153 (256)
T ss_dssp             GCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHH
T ss_pred             ccccccccccCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcccccccccccccccccCCCCHHHHHHHcCCHHHHH
Confidence                  34679999999999999999999999998      67777775             999999999999999999


Q ss_pred             HHHhcccccc--eeeeeecccCCCCCHhHhhhhcCCCchhHH-------HHHHHHHhccccC
Q 025505          141 LLIRENSNRR--IMIRINTVNKEGQTTLQLCNANSQDSAFKE-------IGWIIQRAIAQQS  193 (252)
Q Consensus       141 ~Ll~~~~~~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~-------~~~~L~~~ga~~~  193 (252)
                      +|++     .  .|++++.+|..|+||||+|+..+  .++.+       ++++|+++|+++.
T Consensus       154 ~Ll~-----~~~~ga~~n~~d~~g~TpLh~A~~~~--~~~~~~~~~~~~iv~~Ll~~ga~~~  208 (256)
T 2etb_A          154 YLLE-----NPHQPASLEATDSLGNTVLHALVMIA--DNSPENSALVIHMYDGLLQMGARLC  208 (256)
T ss_dssp             HHHH-----CSSCCCCTTCCCTTSCCHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHh-----ccccCCCcCccCCCCCCHHHHHHHcc--cCCchhhHHHHHHHHHHHHcCCCcc
Confidence            9995     3  78999999999999999998632  23455       9999999999995

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=1.4e-31  Score=208.29  Aligned_cols=163  Identities=15%  Similarity=0.139  Sum_probs=120.8

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      +..|.||||.|+..|+.+.++.|+++|.+++.  +..|.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g~~~~~--~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVKF--NPLPLALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAV   78 (239)
T ss_dssp             -------------------------------------CHHHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccCCCccc--CchhhHHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHH
Confidence            45799999999999999999999999999985  478899999999999999999999999 588999999999999999


Q ss_pred             HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC-CHhHhh--
Q 025505           93 KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ-TTLQLC--  169 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~-t~l~~a--  169 (252)
                      ..|+.+++++|+++++      +++.+|..|+||||+|+..|+.+++++|++      .|++++.++..|. ||+|+|  
T Consensus        79 ~~g~~~~v~~Ll~~ga------~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~~~~t~l~~a~~  146 (239)
T 1ycs_B           79 CAGHTEIVKFLVQFGV------NVNAADSDGWTPLHCAASCNNVQVCKFLVE------SGAAVFAMTYSDMQTAADKCEE  146 (239)
T ss_dssp             HHTCHHHHHHHHHHTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCSSSCCCHHHHCCS
T ss_pred             HcCCHHHHHHHHHcCC------CCCccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCcceecCCCCcchHHHHHH
Confidence            9999999999999999      899999999999999999999999999996      8899999998877 999998  


Q ss_pred             hhcCCCchhHHHHHHHHHhccccCC
Q 025505          170 NANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +.    .++.+++++|++.|++.+.
T Consensus       147 ~~----~g~~~~~~~Ll~~~a~~~~  167 (239)
T 1ycs_B          147 ME----EGYTQCSQFLYGVQEKMGI  167 (239)
T ss_dssp             SS----TTCCCHHHHHHHHHHHTTT
T ss_pred             hh----hccHHHHHHHHHhhhcccc
Confidence            55    7789999999999999875

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=1e-30  Score=209.64  Aligned_cols=161  Identities=26%  Similarity=0.332  Sum_probs=142.8

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccccc--------
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKL--------   80 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~--------   80 (252)
                      ++..|..|.||||+||..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++..        
T Consensus        66 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~~~~g~tpL~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~l  143 (299)
T 1s70_B           66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPL  143 (299)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHH
T ss_pred             CcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCCCcCCCCCCHH
Confidence            678899999999999999999999999999999987 8999999999999999999999999987 344333        


Q ss_pred             ----------------------------------------------------CCCCchHHHHHHHcCChHHHHHHHHHHh
Q 025505           81 ----------------------------------------------------TSNGETALHLAVKKSRSDAFEALVDEAK  108 (252)
Q Consensus        81 ----------------------------------------------------~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  108 (252)
                                                                          +..|.||||+|+..|+.+++++|++.++
T Consensus       144 ~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~  223 (299)
T 1s70_B          144 DIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY  223 (299)
T ss_dssp             HHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC
T ss_pred             HHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcCC
Confidence                                                                2457899999999999999999999998


Q ss_pred             cccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHh
Q 025505          109 NHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRA  188 (252)
Q Consensus       109 ~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~  188 (252)
                            +++..|..|+||||+|+..|+.+++++|++      .|++++.+|..|+||+|+|..    . ..+.++.+++.
T Consensus       224 ------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~------~gad~~~~d~~g~t~l~~A~~----~-~~~~l~~l~~~  286 (299)
T 1s70_B          224 ------DVNIKDYDGWTPLHAAAHWGKEEACRILVE------NLCDMEAVNKVGQTAFDVADE----D-ILGYLEELQKK  286 (299)
T ss_dssp             ------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCTTTSCCS----G-GGHHHHHHHHH
T ss_pred             ------CCCCcCCCCCcHHHHHHhcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----H-HHHHHHHHHHH
Confidence                  889999999999999999999999999996      889999999999999999985    3 44555555443

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.97  E-value=5.6e-31  Score=217.76  Aligned_cols=168  Identities=21%  Similarity=0.224  Sum_probs=152.5

Q ss_pred             cccccccCCCChHHHHHHhCCCHHHHHHHhhcC---ccccccccCCCCcHHHHHHHcC---CHHHHHHHHHhCCccccc-
Q 025505            7 QLASIKNQRGETTMHLLSTDGDAETVRIFGEIN---RELCLEVDNSSMIPLHRAALDG---NSDVIRALVSICPESLEK-   79 (252)
Q Consensus         7 ~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~---~~~~~~~~~~g~t~Lh~A~~~g---~~~~v~~Ll~~~~~~~~~-   79 (252)
                      .-++..|..|.||||+|+..|+.+++++|++.+   .+++. .+..|.||||+|+..+   +.+++++|++++ .+++. 
T Consensus       190 a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~-~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g-~~~~~~  267 (373)
T 2fo1_E          190 ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEE-LDRNGMTALMIVAHNEGRDQVASAKLLVEKG-AKVDYD  267 (373)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSC-CCTTSCCHHHHHHHSCSTTHHHHHHHHHHHT-CCSSCC
T ss_pred             CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhh-cCCCCCCHHHHHHHhCCcchHHHHHHHHHCC-CCcccc
Confidence            346788999999999999999999999999988   67776 8999999999999998   899999999998 45543 


Q ss_pred             -------cCCCCchHHHHHHHcCChHHHHHHHHHH-hcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccce
Q 025505           80 -------LTSNGETALHLAVKKSRSDAFEALVDEA-KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRI  151 (252)
Q Consensus        80 -------~~~~g~t~L~~a~~~~~~~~~~~Ll~~~-~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~  151 (252)
                             .+..|.||||+|+..|+.+++++|++.+ .      +++..|..|+||||+|+..|+.+++++|++      .
T Consensus       268 ~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~------~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~------~  335 (373)
T 2fo1_E          268 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS------NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQ------Q  335 (373)
T ss_dssp             SGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCC------CTTCCCTTCCCHHHHHHHHTCHHHHHHHHH------T
T ss_pred             cccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCC------CccCcCCCCCCHHHHHHHcCCHHHHHHHHH------c
Confidence                   5778999999999999999999999987 6      789999999999999999999999999996      8


Q ss_pred             eeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcccc
Q 025505          152 MIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       152 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~  192 (252)
                      |++++.+|..|+|||++|+.    .++.+++++|++++++.
T Consensus       336 gad~~~~d~~g~t~l~~A~~----~g~~~iv~~Ll~~~a~~  372 (373)
T 2fo1_E          336 GASVEAVDATDHTARQLAQA----NNHHNIVDIFDRCRPER  372 (373)
T ss_dssp             TCCSSCCCSSSCCHHHHHHH----TTCHHHHHHHHTTC---
T ss_pred             CCCccCCCCCCCCHHHHHHH----cCCHHHHHHHHhcCccc
Confidence            99999999999999999999    88999999999999875

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=3.8e-31  Score=209.71  Aligned_cols=172  Identities=18%  Similarity=0.192  Sum_probs=143.9

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhc----Ccccc---ccccCCCCcHHHHHHHc---CCHHHHHHHHHhCCcc-
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEI----NRELC---LEVDNSSMIPLHRAALD---GNSDVIRALVSICPES-   76 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----~~~~~---~~~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~-   76 (252)
                      ..+..|..|+||||+|+..|+.++|+.|++.    +.+++   ...+..|.||||+|+..   |+.+++++|++++... 
T Consensus         5 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~   84 (273)
T 2pnn_A            5 GEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD   84 (273)
T ss_dssp             ------CCCHHHHHHHHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTT
T ss_pred             cCCCCCcccchHHHHHHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhhcccc
Confidence            3567889999999999999999999988874    44433   12578999999999987   9999999999987311 


Q ss_pred             -----cc----ccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCC--------------CCCcHHHHHHhC
Q 025505           77 -----LE----KLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK--------------EGNTVLHLATLN  133 (252)
Q Consensus        77 -----~~----~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~--------------~g~t~Lh~A~~~  133 (252)
                           ++    ..+..|.||||+|+..|+.+++++|++.++      +++..+.              .|.||||+|+..
T Consensus        85 ~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga------~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~  158 (273)
T 2pnn_A           85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA------DVQAAANGDFFKKTKGRPGFYFGELPLSLAACT  158 (273)
T ss_dssp             CHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHT
T ss_pred             chhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCC------CcCccccccccccccccccccCCCCHHHHHHHc
Confidence                 22    256789999999999999999999999998      6777776              799999999999


Q ss_pred             ChHHHHHHHHhcccccc--eeeeeecccCCCCCHhHhhhhcCCCchh---------HHHHHHHHHhccccCC
Q 025505          134 KLKQIVELLIRENSNRR--IMIRINTVNKEGQTTLQLCNANSQDSAF---------KEIGWIIQRAIAQQSP  194 (252)
Q Consensus       134 ~~~~~v~~Ll~~~~~~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~---------~~~~~~L~~~ga~~~~  194 (252)
                      |+.+++++|++     .  .|++++.+|..|+||||+|+.    .++         .+++++|+++|++++.
T Consensus       159 g~~~~v~~Ll~-----~~~~gad~~~~d~~g~tpLh~A~~----~~~~~~~~~~~~~~~v~~Ll~~ga~~n~  221 (273)
T 2pnn_A          159 NQLAIVKFLLQ-----NSWQPADISARDSVGNTVLHALVE----VADNTVDNTKFVTSMYNEILILGAKLHP  221 (273)
T ss_dssp             TCHHHHHHHHH-----CSSCCCCTTCCCTTSCCHHHHHHH----HCCSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHh-----cccCCCCceeeCCCCCcHHHHHHH----ccCcchhHHHHHHHHHHHHHHhhhhccc
Confidence            99999999995     3  789999999999999999987    444         7899999999999975

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=202.10  Aligned_cols=170  Identities=16%  Similarity=0.173  Sum_probs=142.9

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      .++.+|..|.||||+|+..|+.+++++|++.++++....+..|.||||+|+..|+.+++++|++.+ .+++..+..|.||
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~  112 (240)
T 3eu9_A           34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSC  112 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCH
Confidence            367788999999999999999999999999999888756677999999999999999999999998 6788889999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCCh-HHHHHHHHhcccccceeeeeecccC-CCCCH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKL-KQIVELLIRENSNRRIMIRINTVNK-EGQTT  165 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~-~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~  165 (252)
                      ||+|+..++.+++++|++.+.      +++..+..|.||||+|+..+. .+++++|++      .+++++..+. .|.||
T Consensus       113 l~~A~~~~~~~~~~~Ll~~~~------~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~------~~~~~~~~~~~~g~t~  180 (240)
T 3eu9_A          113 IHLAAQFGHTSIVAYLIAKGQ------DVDMMDQNGMTPLMWAAYRTHSVDPTRLLLT------FNVSVNLGDKYHKNTA  180 (240)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHHCCSSTTHHHHHH------TTCCTTCCCTTTCCCH
T ss_pred             HHHHHHcCHHHHHHHHHhcCC------CccccCCCCCcHHHHHHHhCChHHHHHHHHh------cCCCcchhhccCCCcH
Confidence            999999999999999999888      677777778888888775554 677777774      6777777775 77788


Q ss_pred             hHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          166 LQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       166 l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ||+|+.    .++.+++++|+++|++++.
T Consensus       181 L~~A~~----~~~~~~v~~Ll~~g~~~~~  205 (240)
T 3eu9_A          181 LHWAVL----AGNTTVISLLLEAGANVDA  205 (240)
T ss_dssp             HHHHHH----HTCHHHHHHHHHHTCCTTC
T ss_pred             HHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            888777    7777788888888777764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.97  E-value=9.5e-31  Score=212.70  Aligned_cols=170  Identities=20%  Similarity=0.092  Sum_probs=139.8

Q ss_pred             cccccc-ccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCC---HHHHHHHHHhCCccccccC
Q 025505            6 PQLASI-KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGN---SDVIRALVSICPESLEKLT   81 (252)
Q Consensus         6 p~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~---~~~v~~Ll~~~~~~~~~~~   81 (252)
                      +.-++. .|..|+||||+||..|+.++|++|+++|++++. .+..|+||||+|+..|+   .++++.|++.+..+++.++
T Consensus       120 g~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~-~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~~d  198 (327)
T 1sw6_A          120 QLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILED  198 (327)
T ss_dssp             CCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEEC
T ss_pred             CCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccCCC
Confidence            344667 899999999999999999999999999999997 99999999999999998   7888899988766789999


Q ss_pred             CCCchHHHHHHH----cCChHHHHHHHHHHhccc--------------ccccccccCCCCCcHHHHHHhCChHHHHHHHH
Q 025505           82 SNGETALHLAVK----KSRSDAFEALVDEAKNHR--------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLI  143 (252)
Q Consensus        82 ~~g~t~L~~a~~----~~~~~~~~~Ll~~~~~~~--------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll  143 (252)
                      ..|.||||+|+.    .++.+++++|++.+....              ...+++..+..|.||||+|+.      +++|+
T Consensus       199 ~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll  272 (327)
T 1sw6_A          199 SMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWII  272 (327)
T ss_dssp             TTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCS------HHHHH
T ss_pred             CCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHH
Confidence            999999999999    899999999999843110              012778889999999999985      88899


Q ss_pred             hcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          144 RENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +      .  +++.+|..|+||||+|+.    .++.+++++|+++|++++.
T Consensus       273 ~------~--~~n~~d~~G~TpLh~A~~----~g~~~~v~~Ll~~Gad~~~  311 (327)
T 1sw6_A          273 A------N--MLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFI  311 (327)
T ss_dssp             H------H--TTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTC
T ss_pred             H------h--CCCCCCCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCcc
Confidence            6      3  588899999999999998    8889999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.97  E-value=3e-30  Score=210.50  Aligned_cols=172  Identities=20%  Similarity=0.219  Sum_probs=155.0

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccc---------cccCCCCcHHHHHHHcCCHHHHHHHHHhCCcccc
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCL---------EVDNSSMIPLHRAALDGNSDVIRALVSICPESLE   78 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~---------~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~   78 (252)
                      .++..|..|.||||+|+..|+.+++++|+++|++++.         ..+..|.||||+|+..|+.+++++|+++...+++
T Consensus       117 ~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n  196 (337)
T 4g8k_A          117 DVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVN  196 (337)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTT
T ss_pred             hhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcC
Confidence            4678899999999999999999999999999988764         1345789999999999999999999987548899


Q ss_pred             ccCCCCchHHHHHHHcCC----hHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeee
Q 025505           79 KLTSNGETALHLAVKKSR----SDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIR  154 (252)
Q Consensus        79 ~~~~~g~t~L~~a~~~~~----~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~  154 (252)
                      .++..|.|+++.++..+.    ..++++|++.++      +++.++..|+||||+|+..++.+++++|++     ..+++
T Consensus       197 ~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~ga------d~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~-----~~~~~  265 (337)
T 4g8k_A          197 ACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA------DVNVRGERGKTPLILAVEKKHLGLVQRLLE-----QEHIE  265 (337)
T ss_dssp             CCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTC------CTTCCCGGGCCHHHHHHHTTCHHHHHHHHT-----STTCC
T ss_pred             ccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHhhhhHHHHHHHH-----hcCCc
Confidence            999999999998876654    357899999999      889999999999999999999999999997     57899


Q ss_pred             eecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          155 INTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       155 ~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ++.+|..|+||||+|+.    .++.+++++|+++|++++.
T Consensus       266 vn~~d~~G~TpL~~A~~----~g~~~iv~~Ll~~GAd~n~  301 (337)
T 4g8k_A          266 INDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  301 (337)
T ss_dssp             TTCBCTTSCBHHHHHHH----TTCHHHHHHHHTTSCSSTT
T ss_pred             ccCcCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            99999999999999999    8899999999999998864

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=4.5e-30  Score=199.10  Aligned_cols=172  Identities=17%  Similarity=0.113  Sum_probs=149.0

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHH
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALH   89 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   89 (252)
                      +..|+.|.|||++|+..|+.+++++|++.|.+++. .+..|.||||+|+..|+.+++++|+++++......+..|.||||
T Consensus         3 ~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~   81 (240)
T 3eu9_A            3 THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQ-PDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLH   81 (240)
T ss_dssp             CCCSCGGGCCHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHH
T ss_pred             cccccccchHHHHHHHcCChHHHHHHHHcCCCcCC-CCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhH
Confidence            45688899999999999999999999999998877 88889999999999999999999999985554555666999999


Q ss_pred             HHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhh
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC  169 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a  169 (252)
                      +|+..++.+++++|++.+.      +++..+..|.||||+|+..++.+++++|++      .+++++..+..|.||||+|
T Consensus        82 ~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~------~~~~~~~~~~~g~t~l~~a  149 (240)
T 3eu9_A           82 WATRQGHLSMVVQLMKYGA------DPSLIDGEGCSCIHLAAQFGHTSIVAYLIA------KGQDVDMMDQNGMTPLMWA  149 (240)
T ss_dssp             HHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHcCHHHHHHHHHh------cCCCccccCCCCCcHHHHH
Confidence            9999999999999999888      778888999999999999999999999996      7888899999999999998


Q ss_pred             hhcCCCchhHHHHHHHHHhccccCCCCC
Q 025505          170 NANSQDSAFKEIGWIIQRAIAQQSPQLP  197 (252)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~~ga~~~~~~~  197 (252)
                      +..   ....+++++|++.|++.+....
T Consensus       150 ~~~---~~~~~~~~~L~~~~~~~~~~~~  174 (240)
T 3eu9_A          150 AYR---THSVDPTRLLLTFNVSVNLGDK  174 (240)
T ss_dssp             HHH---CCSSTTHHHHHHTTCCTTCCCT
T ss_pred             HHh---CChHHHHHHHHhcCCCcchhhc
Confidence            852   3347899999999999886544

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.97  E-value=3.3e-30  Score=190.49  Aligned_cols=150  Identities=21%  Similarity=0.240  Sum_probs=135.3

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      |+..+..++.+|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++
T Consensus        22 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~   99 (172)
T 3v30_A           22 LRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI-LAKERESALSLASTGGYTDIVGLLLERD-VDINIYD   99 (172)
T ss_dssp             HTTCSGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHTTT-CCTTCCC
T ss_pred             HHcCcccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCchh-hcccCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCC
Confidence            5566777899999999999999999999999999999999987 8999999999999999999999999998 7889999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.||||+|+..++.+++++|++.++      +++..+..|.||||+|+..++.+++++|++      ++.++...+..
T Consensus       100 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~------~~~~~~~~~~~  167 (172)
T 3v30_A          100 WNGGTPLLYAVRGNHVKCVEALLARGA------DLTTEADSGYTPMDLAVALGYRKVQQVIEN------HILKLFQSNLV  167 (172)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH------HHHHHSCC---
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHHhCcHHHHHHHHH------HHHHHhcccCC
Confidence            999999999999999999999999998      789999999999999999999999999996      78888888888


Q ss_pred             CCCH
Q 025505          162 GQTT  165 (252)
Q Consensus       162 g~t~  165 (252)
                      |.||
T Consensus       168 ~~~p  171 (172)
T 3v30_A          168 PADP  171 (172)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8776

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.9e-31  Score=206.20  Aligned_cols=167  Identities=14%  Similarity=0.067  Sum_probs=143.1

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      |...+..+..|.||||+|+..|+.+++++|++.|++++. .|..|.||||+|+..|+.+++++|++++ .+++.+|..|.
T Consensus        11 ~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~tpLh~A~~~g~~~~v~~Ll~~g-a~~n~~d~~g~   88 (229)
T 2vge_A           11 PRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQ-PNEEGITALHNAICGANYSIVDFLITAG-ANVNSPDSHGW   88 (229)
T ss_dssp             CCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCC
T ss_pred             CccccccccchhHHHHHHHHcCCHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCC
Confidence            445667788899999999999999999999999999988 8999999999999999999999999998 78999999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccC-CCCCcHHHHH--HhCChHHHHHHHHhcccc--------------
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD-KEGNTVLHLA--TLNKLKQIVELLIRENSN--------------  148 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A--~~~~~~~~v~~Ll~~~~~--------------  148 (252)
                      ||||+|+..|+.+++++|++.++      +++..+ ..|+||||+|  +..++.+++++|++.|++              
T Consensus        89 tpLh~A~~~g~~~~v~~Ll~~ga------~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~  162 (229)
T 2vge_A           89 TPLHCAASCNDTVICMALVQHGA------AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWD  162 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTTC------CTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSC
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC------CcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHH
Confidence            99999999999999999999998      788876 6999999999  999999999999986542              


Q ss_pred             ----------cceeee--eecccCCCCCHhHhhhhcCCCchhHHHHHH
Q 025505          149 ----------RRIMIR--INTVNKEGQTTLQLCNANSQDSAFKEIGWI  184 (252)
Q Consensus       149 ----------~~~~~~--~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~  184 (252)
                                ...|.+  ++.+|..|+||||+|+.    .++.++++.
T Consensus       163 ~~~~~~~~~ll~~ga~~~~~~~d~~G~TpL~~A~~----~g~~~~v~~  206 (229)
T 2vge_A          163 YSAEFGDELSFREGESVTVLRRDGPEETDWWWAAL----HGQEGYVPR  206 (229)
T ss_dssp             BCCSSTTBCCBCTTCEEEEEESSCTTCSSEEEEEE----TTEEEEEEG
T ss_pred             HhhccccccCccccccccccccCCCcccHHHHHHH----cCCcceeeh
Confidence                      112333  55666677777777776    556666653

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.96  E-value=1.4e-29  Score=206.46  Aligned_cols=164  Identities=20%  Similarity=0.214  Sum_probs=143.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhh-cCccccccccCCCCcHHHHHHHcCC----HHHHHHHHHhCCccccccCCC
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGE-INRELCLEVDNSSMIPLHRAALDGN----SDVIRALVSICPESLEKLTSN   83 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~~~~~~~g~t~Lh~A~~~g~----~~~v~~Ll~~~~~~~~~~~~~   83 (252)
                      ....+..|.||||+|+..|+.++|++|++ .|++++. .+..|.|++|.++..++    ..++++|++++ .+++.++..
T Consensus       161 ~~~~~~~g~T~L~~A~~~g~~~~v~~LL~~~gad~n~-~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~g-ad~n~~d~~  238 (337)
T 4g8k_A          161 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNA-CDNMGRNALIHALLSSDDSDVEAITHLLLDHG-ADVNVRGER  238 (337)
T ss_dssp             ---CTTCSCCHHHHHHHHTCHHHHHHHHHHSCCCTTC-CCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTT-CCTTCCCGG
T ss_pred             cccccCCCCcHHHHHHHCCCHHHHHHHHhccCCCcCc-cCCCCCcHHHHHHHHcCcccHHHHHHHHHHCC-CCCCCcCCC
Confidence            45567889999999999999999999996 5899987 89999999998876544    46889999999 789999999


Q ss_pred             CchHHHHHHHcCChHHHHHHHHH-HhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCC
Q 025505           84 GETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEG  162 (252)
Q Consensus        84 g~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  162 (252)
                      |.||||+|+..++.+++++|+.. +.      +++.+|..|+||||+|+..|+.++|++|++      +|++++.     
T Consensus       239 g~t~L~~a~~~~~~~~v~~Ll~~~~~------~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~------~GAd~n~-----  301 (337)
T 4g8k_A          239 GKTPLILAVEKKHLGLVQRLLEQEHI------EINDTDSDGKTALLLAVELKLKKIAELLCK------RGASTDC-----  301 (337)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHTSTTC------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHT------TSCSSTT-----
T ss_pred             CCCHHHHHHHhhhhHHHHHHHHhcCC------cccCcCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCC-----
Confidence            99999999999999999999985 55      789999999999999999999999999996      7777764     


Q ss_pred             CCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          163 QTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       163 ~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      .+|||+|+.    .++.+++++|+++||+++..
T Consensus       302 ~~~L~~A~~----~~~~~iv~~Ll~~GA~~d~~  330 (337)
T 4g8k_A          302 GDLVMTARR----NYDHSLVKVLLSHGAKEDFH  330 (337)
T ss_dssp             CCHHHHHHH----TTCHHHHHHHHHTTCCC---
T ss_pred             CCHHHHHHH----cCCHHHHHHHHHCcCCCCCC
Confidence            469999998    88999999999999998753

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.96  E-value=2.6e-29  Score=205.44  Aligned_cols=174  Identities=18%  Similarity=0.179  Sum_probs=150.2

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      ....+..+.|+||.|+..|+.+.++.|+.. +.+++. .|..|.||||+|+..|+.+++++|++++ .+++.++..|.||
T Consensus        17 ~~~~~~~~~~~L~~A~~~g~~~~v~~ll~~~~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~   94 (351)
T 3utm_A           17 AVLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHA-SDGRKSTPLHLAAGYNRVRIVQLLLQHG-ADVHAKDKGGLVP   94 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHCCTTTTTCCC-SSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCCH
T ss_pred             eeeeccccchhHHHHHHcCCHHHHHHHHHhcCCCccc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCcH
Confidence            345677899999999999999999999876 667766 8999999999999999999999999999 7889999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhccccc------------------
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNR------------------  149 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~------------------  149 (252)
                      ||+|+..|+.+++++|++.++      +++..+..|.||||+|+..|+.+++++|++.|+..                  
T Consensus        95 L~~A~~~g~~~iv~~Ll~~g~------~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~  168 (351)
T 3utm_A           95 LHNACSYGHYEVTELLLKHGA------CVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE  168 (351)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHH
T ss_pred             HHHHHHCCCHHHHHHHHHCCC------CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhh
Confidence            999999999999999999998      78888999999999999999999999999865421                  


Q ss_pred             ------------------------------------------------------------------ceeeeeecccCCCC
Q 025505          150 ------------------------------------------------------------------RIMIRINTVNKEGQ  163 (252)
Q Consensus       150 ------------------------------------------------------------------~~~~~~~~~~~~g~  163 (252)
                                                                                        ..|++++.+|..|.
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~  248 (351)
T 3utm_A          169 LRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFM  248 (351)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCC
T ss_pred             hHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCC
Confidence                                                                              13456666777788


Q ss_pred             CHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          164 TTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       164 t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ||||+|+.    .++.+++++|+++|++++.
T Consensus       249 t~L~~A~~----~g~~~~v~~Ll~~ga~~n~  275 (351)
T 3utm_A          249 TPLHVAAE----RAHNDVMEVLHKHGAKMNA  275 (351)
T ss_dssp             CHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             CHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            88888877    7777888888888877764

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=8.5e-30  Score=200.43  Aligned_cols=173  Identities=18%  Similarity=0.209  Sum_probs=142.7

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHH----hhcCcccccc---ccCCCCcHHHHHH---HcCCHHHHHHHHHhCC--------
Q 025505           13 NQRGETTMHLLSTDGDAETVRIF----GEINRELCLE---VDNSSMIPLHRAA---LDGNSDVIRALVSICP--------   74 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~L----l~~~~~~~~~---~~~~g~t~Lh~A~---~~g~~~~v~~Ll~~~~--------   74 (252)
                      +..|+|+||.|+..|+.++++.|    ++.+.+++..   .+..|.||||+|+   ..|+.+++++|++.+.        
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   81 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREF   81 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhh
Confidence            56799999999999999955544    4588888751   2377999999999   6799999999999863        


Q ss_pred             --ccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccC--------------CCCCcHHHHHHhCChHHH
Q 025505           75 --ESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD--------------KEGNTVLHLATLNKLKQI  138 (252)
Q Consensus        75 --~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--------------~~g~t~Lh~A~~~~~~~~  138 (252)
                        ......|..|.||||+|+..|+.+++++|++.++      +++..+              ..|+||||+|+..|+.++
T Consensus        82 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga------~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~  155 (260)
T 3jxi_A           82 INSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGA------DVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHI  155 (260)
T ss_dssp             HTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHH
T ss_pred             hcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCC------CcCccccccccCcccccccccCCCCHHHHHHHcCCHHH
Confidence              1234445689999999999999999999999998      677777              689999999999999999


Q ss_pred             HHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCc-----hhHHHHHHHHHhccccCC
Q 025505          139 VELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDS-----AFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       139 v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~-----~~~~~~~~L~~~ga~~~~  194 (252)
                      +++|++.+.   .|++++.+|..|+||||+|+..+...     ...+++++|+++|++++.
T Consensus       156 v~~Ll~~~~---~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~  213 (260)
T 3jxi_A          156 VHYLTENGH---KQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFP  213 (260)
T ss_dssp             HHHHHHCSS---CCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHhccc---cCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCccccc
Confidence            999995100   78999999999999999998622100     016899999999999864

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.96  E-value=5.1e-30  Score=186.59  Aligned_cols=146  Identities=14%  Similarity=0.059  Sum_probs=119.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCch-H
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET-A   87 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~   87 (252)
                      .+..++.|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+ .|+.+++++|++++ .+++.++..|.| |
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~-~~~~~~v~~Ll~~g-~~~~~~d~~g~ttp   81 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRP   81 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCH
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHH-cCCHHHHHHHHHcC-CCCCCcCCCCCcHH
Confidence            456788999999999999999999999999999988 8999999999985 89999999999998 789999999999 9


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      ||+|+..++.+++++|+++++      +++.++..|+||||+|+..++.+++++|++      .|++++.++..|.||.+
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           82 VHDAAREGFLDTLVVLHRAGA------RLDVRDAWGRLPVDLAEELGHRDVARYLRA------AAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHTC------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSS------CC---------------
T ss_pred             HHHHHHCCCHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHhCHHHHHHHHHH------cCCCCCccCcCcCcccc
Confidence            999999999999999999999      889999999999999999999999999995      89999999999999987


Q ss_pred             hh
Q 025505          168 LC  169 (252)
Q Consensus       168 ~a  169 (252)
                      .+
T Consensus       150 ~~  151 (156)
T 1bi7_B          150 GP  151 (156)
T ss_dssp             --
T ss_pred             cC
Confidence            54

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=3.3e-29  Score=178.08  Aligned_cols=127  Identities=17%  Similarity=0.209  Sum_probs=62.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCC-CC
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKE-GN  124 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~-g~  124 (252)
                      .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+. ++.+++++|++.++      +++.++.. |+
T Consensus         8 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~------~~~~~~~~~g~   79 (136)
T 1d9s_A            8 LGGSSDAGLATAAARGQVETVRQLLEAG-ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGA------EPNCADPATLT   79 (136)
T ss_dssp             CCCCCSCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTC------CSSCCBTTTTB
T ss_pred             CCCCCccHHHHHHHcCCHHHHHHHHHcC-CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCC------CCCCcCCCCCC
Confidence            4444444444444444444444444444 3444444444444444444 44445555554444      44444444 45


Q ss_pred             cHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcc
Q 025505          125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIA  190 (252)
Q Consensus       125 t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga  190 (252)
                      ||||+|+..++.+++++|++      .|++++.+|..|.||||+|+.    .++.+++++|+++|+
T Consensus        80 t~L~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~Ll~~Ga  135 (136)
T 1d9s_A           80 RPVHDAAREGFLDTLVVLHR------AGARLDVCDAWGRLPVDLAEE----QGHRDIARYLHAATG  135 (136)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH------TCCCCCCCSSSSSCHHHHHHH----HTCHHHHHHHHHHHC
T ss_pred             CHHHHHHHcCCHHHHHHHHH------cCCCCCccCCCCCCHHHHHHH----cCCHHHHHHHHHcCC
Confidence            55555555555555555553      444455555555555555554    444555555555544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=8.7e-29  Score=197.41  Aligned_cols=161  Identities=18%  Similarity=0.082  Sum_probs=150.4

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCC-chHHHHHHH
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNG-ETALHLAVK   93 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g-~t~L~~a~~   93 (252)
                      +|+||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..| .||||+|+.
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~g~~t~L~~A~~  138 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSGLDDSQ-FDDKGNTALYYAVDSGNMQTVKLFVKKN-WRLMFYGKTGWKTSFYHAVM  138 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHHC-GGGGGCSSSGGGSHHHHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCccCCCCCCCHHHHHHH
Confidence            599999999999999999999999999988 8999999999999999999999999998 7889999999 899999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccCC-CCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCH-hHhhhh
Q 025505           94 KSRSDAFEALVDEAKNHRKEHLFTWKDK-EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT-LQLCNA  171 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~-l~~a~~  171 (252)
                      .|+.+++++|++.++      ..  .+. .|+||||+|+..|+.+++++|++      .|++++.+|..|+|| ||+|+.
T Consensus       139 ~~~~~~v~~Ll~~g~------~~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~gad~n~~~~~g~t~~L~~A~~  204 (285)
T 3kea_A          139 LNDVSIVSYFLSEIP------ST--FDLAILLSCIHITIKNGHVDMMILLLD------YMTSTNTNNSLLFIPDIKLAID  204 (285)
T ss_dssp             TTCHHHHHHHHTTSC------TT--CCCSTHHHHHHHHHHTTCHHHHHHHHH------HHHHTCTTCCCBCCTTHHHHHH
T ss_pred             cCCHHHHHHHHhCCC------cc--ccccCCccHHHHHHHcChHHHHHHHHH------cCCCCCcccCCCCChHHHHHHH
Confidence            999999999999987      22  233 88999999999999999999996      899999999999998 999999


Q ss_pred             cCCCchhHHHHHHHHHhccccCCC
Q 025505          172 NSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       172 ~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                          .++.+++++|+++|++++..
T Consensus       205 ----~~~~~~v~~Ll~~gad~~~~  224 (285)
T 3kea_A          205 ----NKDIEMLQALFKYDINIYSA  224 (285)
T ss_dssp             ----HTCHHHHHHHTTSCBCSTTT
T ss_pred             ----cCCHHHHHHHHHcCCCCCCC
Confidence                88999999999999999865

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.96  E-value=3.4e-29  Score=178.01  Aligned_cols=127  Identities=16%  Similarity=0.142  Sum_probs=122.3

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCC-CchH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSN-GETA   87 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~-g~t~   87 (252)
                      ++..|..|.||||+|+..|+.+++++|++.+++++. .+..|.||||+|+. |+.+++++|++++ .+++.++.. |.||
T Consensus         5 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~-~~~~~v~~Ll~~g-~~~~~~~~~~g~t~   81 (136)
T 1d9s_A            5 IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNA-LNRFGRRPIQVMMM-GSAQVAELLLLHG-AEPNCADPATLTRP   81 (136)
T ss_dssp             CSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCTTTTTSTT-SCHHHHHHHHHHT-CCSSCCBTTTTBCH
T ss_pred             ccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCCcCC-cCCCCCCHHHHHHc-CCHHHHHHHHHCC-CCCCCcCCCCCCCH
Confidence            678899999999999999999999999999999987 89999999999999 9999999999999 788999999 9999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ||+|+..++.+++++|++.++      +++..|..|.||||+|+..++.+++++|++
T Consensus        82 L~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~  132 (136)
T 1d9s_A           82 VHDAAREGFLDTLVVLHRAGA------RLDVCDAWGRLPVDLAEEQGHRDIARYLHA  132 (136)
T ss_dssp             HHHHHHHTCHHHHHHHHHTCC------CCCCCSSSSSCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCC------CCCccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            999999999999999999998      789999999999999999999999999997

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=2.1e-29  Score=188.38  Aligned_cols=161  Identities=12%  Similarity=0.018  Sum_probs=142.5

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCH----HHHHHHHHhCCccccccCCCCchHHHHH
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS----DVIRALVSICPESLEKLTSNGETALHLA   91 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~L~~a   91 (252)
                      +.++|+.|+..|+.+.++.++..+.+..  .+..|+||||+|+..|+.    +++++|+++| ++++.++..|.||||+|
T Consensus         6 ~~~~l~~Aa~~g~~~~~~~l~~~~~~~~--~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G-advn~~d~~g~TpLh~a   82 (186)
T 3t8k_A            6 EYRTVSAAAMLGTYEDFLELFEKGYEDK--ESVLKSNILYDVLRNNNDEARYKISMFLINKG-ADIKSRTKEGTTLFFPL   82 (186)
T ss_dssp             HCSSHHHHHHHSCHHHHHHHHHHSSSCH--HHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTT-CCSSCCCTTCCCTHHHH
T ss_pred             cccHHHHHHHcCCHHHHHHHHhcCcccc--cccCCCCHHHHHHHcCCcchHHHHHHHHHHCC-CCCCCCCCCCCcHHHHH
Confidence            5689999999999999999998775431  337799999999999975    5999999999 78999999999999999


Q ss_pred             HHcCC------hHHHHHHHHHHhcccccccccccCCCCC-cHHHHHHhCC-----hHHHHHHHHhcccccceeeeeeccc
Q 025505           92 VKKSR------SDAFEALVDEAKNHRKEHLFTWKDKEGN-TVLHLATLNK-----LKQIVELLIRENSNRRIMIRINTVN  159 (252)
Q Consensus        92 ~~~~~------~~~~~~Ll~~~~~~~~~~~~~~~~~~g~-t~Lh~A~~~~-----~~~~v~~Ll~~~~~~~~~~~~~~~~  159 (252)
                      +..++      .+++++|++.|+      +++.+|..|+ ||||+|+..+     ..+++++|++     ..|++++.+|
T Consensus        83 ~~~~~~~~~~~~~iv~~Ll~~Ga------din~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~-----~~gad~~~~d  151 (186)
T 3t8k_A           83 FQGGGNDITGTTELCKIFLEKGA------DITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFS-----QSGLQLLIKD  151 (186)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTTC------CSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHT-----STTCCTTCCC
T ss_pred             HHcCCcchhhHHHHHHHHHHCCC------CCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHH-----hcCCCCcccC
Confidence            99987      478999999999      8999999999 9999999844     4579999995     4899999999


Q ss_pred             CCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          160 KEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       160 ~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ..|+||||+|..    .++.+++++|.++..+.+.
T Consensus       152 ~~G~TpL~~A~~----~~~~~~v~~L~~~~~~~~~  182 (186)
T 3t8k_A          152 KWGLTALEFVKR----CQKPIALKMMEDYIKKYNL  182 (186)
T ss_dssp             TTSCCHHHHHHT----TTCHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHH----cCCHHHHHHHHHHHHHHhc
Confidence            999999999998    8899999999988766553

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.95  E-value=1.8e-28  Score=182.33  Aligned_cols=146  Identities=17%  Similarity=0.226  Sum_probs=135.3

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      |+..+..++..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.+|
T Consensus        25 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d  102 (179)
T 3f6q_A           25 LDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV-MNRGDDTPLHLAASHGHRDIVQKLLQYK-ADINAVN  102 (179)
T ss_dssp             HHCTTSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HhcCcccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccC
Confidence            4555777889999999999999999999999999999999988 8999999999999999999999999999 7889999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.||||+|+..++.+++++|++.++      +++..+..|.||||+|+..++.+++++|++      .|++++..+..
T Consensus       103 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~------~g~~~~~~~~~  170 (179)
T 3f6q_A          103 EHGNVPLHYACFWGQDQVAEDLVANGA------LVSICNKYGEMPVDKAKAPLRELLRERAEK------MGQNLNRIPYK  170 (179)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHTTC------CSSBCCTTSCCGGGGSCHHHHHHHHHHHHH------TTCCCSCBCCC
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCC------CcchhccCCCCcHHHHHHHHHHHHHHHHHH------hhcCcccCCcc
Confidence            999999999999999999999999999      889999999999999999999999999996      77777765543

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.95  E-value=1.2e-28  Score=195.62  Aligned_cols=165  Identities=17%  Similarity=0.181  Sum_probs=151.6

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCcc--ccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRE--LCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~--~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      +...++++|.|+..|+.+.++.++..+.+  ++. .|..|.||||+|+..|+.+++++|++.+..+++..+..|.||||+
T Consensus        73 ~~~~~~~l~~a~~~~~~~~~~~l~~~~~~~~~n~-~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~  151 (276)
T 4hbd_A           73 RLACRSDAHPELVRRHLVTFRAMSARLLDYVVNI-ADSNGNTALHYSVSHANFPVVQQLLDSGVCKVDKQNRAGYSPIML  151 (276)
T ss_dssp             HHHHSTTCCHHHHHHHHHHHHHHCHHHHHHHHTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHHHHHHHHHHhhcCcC-CCCCCCCHHHHHHHCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHH
Confidence            34567889999999999999999988766  555 899999999999999999999999999966899999999999999


Q ss_pred             HH-----HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCH
Q 025505           91 AV-----KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTT  165 (252)
Q Consensus        91 a~-----~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~  165 (252)
                      |+     ..++.+++++|++.+.      ..+..+..|+||||+|+..|+.+++++|++      .|++++.+|..|+||
T Consensus       152 a~~~~~~~~~~~~~v~~Ll~~g~------~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~------~gad~n~~d~~G~Tp  219 (276)
T 4hbd_A          152 TALATLKTQDDIETVLQLFRLGN------INAKASQAGQTALMLAVSHGRVDVVKALLA------CEADVNVQDDDGSTA  219 (276)
T ss_dssp             GGGCCCCSHHHHHHHHHHHHHSC------TTCCCTTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCH
T ss_pred             HHHHHhhhhhhHHHHHHHHHcCC------CccccCCCCCCHHHHHHHcCCHHHHHHHHh------CCCCCCCCCCCCCCH
Confidence            99     6688999999999998      778888999999999999999999999996      899999999999999


Q ss_pred             hHhhhhcCCCchhHHHHHHHHH-hccccCC
Q 025505          166 LQLCNANSQDSAFKEIGWIIQR-AIAQQSP  194 (252)
Q Consensus       166 l~~a~~~~~~~~~~~~~~~L~~-~ga~~~~  194 (252)
                      ||+|+.    .++.+++++|++ .|++++.
T Consensus       220 Lh~A~~----~g~~~iv~~Ll~~~gad~~~  245 (276)
T 4hbd_A          220 LMCACE----HGHKEIAGLLLAVPSCDISL  245 (276)
T ss_dssp             HHHHHH----HTCHHHHHHHHTSTTCCTTC
T ss_pred             HHHHHH----CCCHHHHHHHHhcCCCCCcC
Confidence            999999    889999999999 8998875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.95  E-value=1.1e-27  Score=175.12  Aligned_cols=129  Identities=23%  Similarity=0.313  Sum_probs=122.2

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      -++..|..|+||||+|+. |+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||
T Consensus        30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~  106 (162)
T 1ihb_A           30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIEDNEGNLP  106 (162)
T ss_dssp             CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             CccccCccCccHHHHHHc-CcHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCH
Confidence            367889999999999999 999999999999999987 8999999999999999999999999999 7889999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ||+|+..++.+++++|++.+++     .++..+..|.||||+|+..++.+++++|++
T Consensus       107 L~~A~~~~~~~~v~~Ll~~g~~-----~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~  158 (162)
T 1ihb_A          107 LHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNEVVSLMQA  158 (162)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHccCC-----CCCCcCCCCCcHHHHHHHcCCHHHHHHHHH
Confidence            9999999999999999999983     368899999999999999999999999997

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.95  E-value=1e-27  Score=175.88  Aligned_cols=134  Identities=22%  Similarity=0.205  Sum_probs=125.3

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      ++..+..++..+..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++
T Consensus        28 l~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~  105 (165)
T 3twr_A           28 CTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHA-KDKGGLVPLHNACSYGHYEVAELLVKHG-AVVNVAD  105 (165)
T ss_dssp             CCTTTTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHcCCCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCCCCc-cCCCCCCHHHHHHHcCcHHHHHHHHhCC-CCCCCcC
Confidence            4445666778889999999999999999999999999999987 8999999999999999999999999999 7889999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ..|.||||+|+..++.+++++|+++++      +++.+|..|.||||+|+. ++.+++++|++
T Consensus       106 ~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~  161 (165)
T 3twr_A          106 LWKFTPLHEAAAKGKYEICKLLLQHGA------DPTKKNRDGNTPLDLVKD-GDTDIQDLLRG  161 (165)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCTGGGSCT-TCHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCC------CCcccCCCCCChhHhHhc-CChHHHHHHhh
Confidence            999999999999999999999999998      889999999999999877 88999999996

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.95  E-value=3.6e-27  Score=173.72  Aligned_cols=129  Identities=25%  Similarity=0.347  Sum_probs=123.4

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      .++.+|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~  116 (169)
T 2y1l_E           39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA-VDHAGMTPLRLAALFGHLEIVEVLLKNG-ADVNANDMEGHTP  116 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCH
Confidence            3678899999999999999999999999999999987 8999999999999999999999999999 7889999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ||+|+..++.+++++|++.++      +++..|..|.||||+|+..++.+++++|++
T Consensus       117 L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  167 (169)
T 2y1l_E          117 LHLAAMFGHLEIVEVLLKNGA------DVNAQDKFGKTAFDISIDNGNEDLAEILQK  167 (169)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHhCCHHHHHHHHH
Confidence            999999999999999999998      788999999999999999999999999996

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.95  E-value=1.6e-27  Score=169.40  Aligned_cols=127  Identities=20%  Similarity=0.249  Sum_probs=118.3

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHH
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALH   89 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   89 (252)
                      ......+.||||+|+..|+.+++++|++.|.+++. .|..|.||||+|+..|+.+++++|++++ .+++.+|..|.||||
T Consensus         8 ~~~~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~t~L~   85 (136)
T 2jab_A            8 HHHGSDLGKKLLEAARAGQDDEVRILMANGADVNA-KDEYGLTPLYLATAHGHLEIVEVLLKNG-ADVNAVDAIGFTPLH   85 (136)
T ss_dssp             ----CHHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHH
T ss_pred             CcccccccHHHHHHHHhCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHH
Confidence            34456789999999999999999999999999987 8999999999999999999999999998 788999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      +|+..++.+++++|++.++      +++..|..|+||||+|+..++.+++++|++
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~  134 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGA------DVNAQDKFGKTAFDISIGNGNEDLAEILQK  134 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHcCC------CCcCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            9999999999999999998      788999999999999999999999999996

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.95  E-value=3.1e-27  Score=171.60  Aligned_cols=129  Identities=22%  Similarity=0.265  Sum_probs=122.5

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      +..++..|..|.||||+ +..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.
T Consensus        26 ~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~  102 (156)
T 1bd8_A           26 LVHPDALNRFGKTALQV-MMFGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPDGTGA  102 (156)
T ss_dssp             CCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCCTTSC
T ss_pred             CcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCC
Confidence            44678889999999999 999999999999999999987 8999999999999999999999999999 78899999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ||||+|+..|+.+++++|++. .      +++..|..|.||||+|+..|+.+++++|++
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~-~------~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  154 (156)
T 1bd8_A          103 LPIHLAVQEGHTAVVSFLAAE-S------DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHTT-S------CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             cHHHHHHHhChHHHHHHHHhc-c------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHh
Confidence            999999999999999999998 6      788999999999999999999999999996

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.95  E-value=5.3e-27  Score=163.99  Aligned_cols=123  Identities=31%  Similarity=0.485  Sum_probs=117.6

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHc
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~   94 (252)
                      +|+||||+|+..|+.+++++|++.+.+++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~l~~A~~~   78 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHc
Confidence            589999999999999999999999999887 8999999999999999999999999998 68889999999999999999


Q ss_pred             CChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhc
Q 025505           95 SRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRE  145 (252)
Q Consensus        95 ~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~  145 (252)
                      ++.+++++|++.+.      +++..+..|.||||+|+..++.+++++|++.
T Consensus        79 ~~~~~~~~Ll~~g~------~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  123 (126)
T 1n0r_A           79 GHLEVVKLLLEAGA------DVNAKDKNGRTPLHLAARNGHLEVVKLLLEA  123 (126)
T ss_dssp             TCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCC------CCcccCCCCCCHHHHHHHcCcHHHHHHHHHc
Confidence            99999999999998      7889999999999999999999999999973

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.94  E-value=6.7e-27  Score=163.49  Aligned_cols=126  Identities=30%  Similarity=0.421  Sum_probs=119.9

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHH
Q 025505           49 SSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLH  128 (252)
Q Consensus        49 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh  128 (252)
                      +|.||||+|+..|+.+++++|++++ .+++..+..|.||||+|+..++.+++++|++.+.      +++..+..|+||||
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t~l~   73 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLH   73 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC-CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCC------CCcccCCCCCcHHH
Confidence            4899999999999999999999998 6788899999999999999999999999999988      78889999999999


Q ss_pred             HHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccc
Q 025505          129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQ  191 (252)
Q Consensus       129 ~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~  191 (252)
                      +|+..++.+++++|++      .|++++.+|..|.||+++|+.    .++.+++++|+++|++
T Consensus        74 ~A~~~~~~~~~~~Ll~------~g~~~~~~~~~g~t~l~~A~~----~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           74 LAARNGHLEVVKLLLE------AGADVNAKDKNGRTPLHLAAR----NGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHTCC
T ss_pred             HHHHcChHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----cCcHHHHHHHHHcCCC
Confidence            9999999999999996      788999999999999999998    8899999999999985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.94  E-value=5e-27  Score=170.11  Aligned_cols=123  Identities=20%  Similarity=0.239  Sum_probs=118.1

Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHH
Q 025505           12 KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLA   91 (252)
Q Consensus        12 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a   91 (252)
                      .|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A  107 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWA  107 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-CCCCCCCHHHHHHHcChHHHHHHHHHcC-CCCCCCCCCCCCHHHHH
Confidence            578899999999999999999999999999987 8999999999999999999999999998 78899999999999999


Q ss_pred             HHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHH
Q 025505           92 VKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL  142 (252)
Q Consensus        92 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  142 (252)
                      +..++.+++++|++.++      +++.++..|.||||+|+..|+.+++++|
T Consensus       108 ~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          108 TEHNHQEVVELLIKYGA------DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHcCC------CccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            99999999999999998      7889999999999999999999999987

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.94  E-value=6.7e-27  Score=171.82  Aligned_cols=131  Identities=16%  Similarity=0.225  Sum_probs=124.8

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE   85 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~   85 (252)
                      +..++.+|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.
T Consensus        26 ~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~  103 (167)
T 3v31_A           26 ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL-LGKGRESALSLACSKGYTDIVKMLLDCG-VDVNEYDWNGG  103 (167)
T ss_dssp             SSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTSC
T ss_pred             CCCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCC-cCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCcCCCCCC
Confidence            344788999999999999999999999999999999987 8999999999999999999999999999 78899999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ||||+|+..++.+++++|+++++      +++..+..|.||||+|+..|+.+++++|++
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~  156 (167)
T 3v31_A          104 TPLLYAVHGNHVKCVKMLLESGA------DPTIETDSGYNSMDLAVALGYRSVQQVIES  156 (167)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCcHHHHHHHHH
Confidence            99999999999999999999998      788999999999999999999999999997

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.94  E-value=1.7e-26  Score=173.47  Aligned_cols=129  Identities=18%  Similarity=0.168  Sum_probs=123.4

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      .++..|..|.||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~~~~g~t~  137 (192)
T 2rfm_A           60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNT-KDFSGKTPLMWSIIFGYSEMSYFLLEHG-ANVNDRNLEGETP  137 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTCCCH
T ss_pred             ccccccccCccHHHHHHHcCCHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCCH
Confidence            3677889999999999999999999999999999987 8999999999999999999999999998 7889999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ||+|+..++.+++++|++.++      +++.+|..|.||||+|+..++.+++++|++
T Consensus       138 L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~  188 (192)
T 2rfm_A          138 LIVASKYGRSEIVKKLLELGA------DISARDLTGLTAEASARIFGRQEVIKIFTE  188 (192)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC------CTTCBCTTSCBHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCCHHHHHHHhCcHHHHHHHHh
Confidence            999999999999999999998      789999999999999999999999999997

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=3.9e-27  Score=167.33  Aligned_cols=127  Identities=24%  Similarity=0.253  Sum_probs=118.2

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      ....+.||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..++.+++++|++.++      +++..|..|+|
T Consensus        10 ~~~~~~t~l~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~d~~g~t   82 (136)
T 2jab_A           10 HGSDLGKKLLEAARAGQDDEVRILMANG-ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGA------DVNAVDAIGFT   82 (136)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTCCC
T ss_pred             ccccccHHHHHHHHhCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCCC
Confidence            4556889999999999999999999998 6889999999999999999999999999999988      78899999999


Q ss_pred             HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhc
Q 025505          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAI  189 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~g  189 (252)
                      |||+|+..++.+++++|++      .|++++.+|..|.||||+|+.    .++.+++++|+++|
T Consensus        83 ~L~~A~~~~~~~~v~~Ll~------~g~~~~~~~~~g~tpl~~A~~----~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           83 PLHLAAFIGHLEIAEVLLK------HGADVNAQDKFGKTAFDISIG----NGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHC-
T ss_pred             HHHHHHHcCCHHHHHHHHH------cCCCCcCcCCCCCCHHHHHHH----CCCHHHHHHHHHcC
Confidence            9999999999999999996      788999999999999999999    88999999999876

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=2.8e-27  Score=168.22  Aligned_cols=129  Identities=20%  Similarity=0.218  Sum_probs=93.0

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+..++.+++++|++.+.      +++..+..|+|
T Consensus         6 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~~~~g~t   78 (137)
T 3c5r_A            6 TNHRGETLLHIASIKGDIPSVEYLLQNG-SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA------LVNTTGYQNDS   78 (137)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCGGGCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCC------cccCcCCCCCC
Confidence            6677777777777777777777777776 5666777777777777777777777777777776      66777777788


Q ss_pred             HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccc
Q 025505          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQ  191 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~  191 (252)
                      |||+|+..++.+++++|++      .|++++.+|..|.||+++|..    .+..+++++|.+.+..
T Consensus        79 ~L~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~tpl~~A~~----~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           79 PLHDAAKNGHVDIVKLLLS------YGASRNAVNIFGLRPVDYTDD----ESMKSLLLLPEKNESS  134 (137)
T ss_dssp             HHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCGGGGCCC----HHHHHHHSCC------
T ss_pred             HHHHHHHcCCHHHHHHHHH------cCCCCCCCCCCCCCHHHHHhh----ccHHHHHhhccccccC
Confidence            8888888888888888885      677777777888888888776    6677777766655443

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.94  E-value=1.8e-26  Score=172.16  Aligned_cols=142  Identities=22%  Similarity=0.212  Sum_probs=128.3

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC-CCCchHHH
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT-SNGETALH   89 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~   89 (252)
                      ..+..|.||||+|+..|+.++++.|++ +.+++. .|..|.||||+|+..|+.+++++|++++ .+++.++ ..|.||||
T Consensus        39 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~~~~~g~tpL~  115 (183)
T 3deo_A           39 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHTT-TSCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSSCCHHH
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHh-cCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCCHHH
Confidence            346789999999999999999999999 888887 8999999999999999999999999999 6787777 89999999


Q ss_pred             HHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhh
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC  169 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a  169 (252)
                      +|+..++.+++++|+++++      +++.+|..|+||||+|+..++                       ...+.+++++|
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~tpl~~A~~~~~-----------------------~~~~~~~l~~a  166 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGA------DIEVEDERGLTALELAREILK-----------------------TTPKGNPMQFG  166 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTC------CTTCCCTTSCCHHHHHHHHHH-----------------------TCCCCSHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCC------CCcCCCCCCCCHHHHHHHhcc-----------------------CcccccHHHHH
Confidence            9999999999999999999      889999999999999985321                       13568999999


Q ss_pred             hhcCCCchhHHHHHHHHHh
Q 025505          170 NANSQDSAFKEIGWIIQRA  188 (252)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~~  188 (252)
                      +.    .+..+++++|.++
T Consensus       167 ~~----~~~~~i~~~L~~~  181 (183)
T 3deo_A          167 RR----IGLEKVINVLEGQ  181 (183)
T ss_dssp             HH----HHHHHHHHHHHTC
T ss_pred             HH----cCHHHHHHHHHHh
Confidence            98    8999999999764

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.94  E-value=1.4e-26  Score=180.56  Aligned_cols=145  Identities=21%  Similarity=0.249  Sum_probs=131.2

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC-CCCchHHH
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT-SNGETALH   89 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~-~~g~t~L~   89 (252)
                      ..+..|.||||+|+..|+.++++.|++ +.+++. .+..|.||||+|+..|+.+++++|++++ .+++.++ ..|.||||
T Consensus        40 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~~~~~g~t~L~  116 (244)
T 3ui2_A           40 DVVSEYETPWWTAARKADEQALSQLLE-DRDVDA-VDENGRTALLFVAGLGSDKCVRLLAEAG-ADLDHRDMRGGLTALH  116 (244)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHTTT-TCCTTC-BCTTSCBHHHHHHHHTCHHHHHHHHHTT-CCTTCCCSSSCCCHHH
T ss_pred             ccccCCCCHHHHHHHcCCHHHHHHHHc-CCCCCC-cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCcCCCCCCCCHHH
Confidence            345689999999999999999999999 889887 8999999999999999999999999999 6787777 88999999


Q ss_pred             HHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhh
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC  169 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a  169 (252)
                      +|+..|+.+++++|+++++      +++.+|..|+||||+|+.         +..              ...+.|||++|
T Consensus       117 ~A~~~g~~~~v~~Ll~~ga------~~~~~d~~g~t~l~~A~~---------~~~--------------~~~~~~~l~~a  167 (244)
T 3ui2_A          117 MAAGYVRPEVVEALVELGA------DIEVEDERGLTALELARE---------ILK--------------TTPKGNPMQFG  167 (244)
T ss_dssp             HHHHTTCHHHHHHHHHTTC------CTTCCCTTCCCHHHHHHH---------HHT--------------TCCCSSHHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCC------CCCCCCCCCCcHHHHHHH---------HHh--------------ccCCCCHHHHH
Confidence            9999999999999999999      889999999999999984         221              25689999999


Q ss_pred             hhcCCCchhHHHHHHHHHhccc
Q 025505          170 NANSQDSAFKEIGWIIQRAIAQ  191 (252)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~~ga~  191 (252)
                      +.    .++.+++++|++.+.+
T Consensus       168 ~~----~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          168 RR----IGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HH----HHHHHHHHHHHHHHEE
T ss_pred             HH----cChHHHHHHHHHhccc
Confidence            98    9999999999998665

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.94  E-value=3.2e-27  Score=171.73  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=118.6

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+|+ .++.+++++|++.++      +++.++..|+|
T Consensus         8 ~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~------~~~~~d~~g~t   79 (156)
T 1bi7_B            8 SMEPSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA------EPNCADPATLT   79 (156)
T ss_dssp             --CCSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC------CCCCCCTTTCC
T ss_pred             CCccchHHHHHHHHcCCHHHHHHHHHcC-CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCC------CCCCcCCCCCc
Confidence            6778999999999999999999999998 688999999999999985 899999999999998      88999999999


Q ss_pred             -HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          126 -VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       126 -~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                       |||+|+..|+.+++++|++      .|++++.+|..|+||||+|+.    .++.+++++|+++|++++..
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~----~~~~~~v~~Ll~~ga~~~~~  140 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEE----LGHRDVARYLRAAAGGTRGS  140 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHH------HTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSSCC------
T ss_pred             HHHHHHHHCCCHHHHHHHHH------cCCCCcccCCCCCCHHHHHHH----hCHHHHHHHHHHcCCCCCcc
Confidence             9999999999999999996      889999999999999999998    88999999999999998753

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.94  E-value=3.8e-26  Score=176.35  Aligned_cols=147  Identities=18%  Similarity=0.172  Sum_probs=126.2

Q ss_pred             HHHHhhcCccccc--cccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhc
Q 025505           32 VRIFGEINRELCL--EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKN  109 (252)
Q Consensus        32 v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  109 (252)
                      ++.|++++++.+.  ..+..+.||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..|+.+++++|++.++ 
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g-~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga-   78 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM-NDPSQPNEEGITALHNAICGANYSIVDFLITAGA-   78 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS-SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC-
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC-CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCC-
Confidence            4677888877654  23456778999999999999999999999 6889999999999999999999999999999998 


Q ss_pred             ccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeeccc-CCCCCHhHhh--hhcCCCchhHHHHHHHH
Q 025505          110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KEGQTTLQLC--NANSQDSAFKEIGWIIQ  186 (252)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t~l~~a--~~~~~~~~~~~~~~~L~  186 (252)
                           +++..|..|+||||+|+..|+.+++++|++      .|++++.++ ..|.||||+|  +.    .++.+++++|+
T Consensus        79 -----~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~------~ga~~~~~~~~~g~tpL~~A~a~~----~~~~~~v~~Ll  143 (229)
T 2vge_A           79 -----NVNSPDSHGWTPLHCAASCNDTVICMALVQ------HGAAIFATTLSDGATAFEKCDPYR----EGYADCATYLA  143 (229)
T ss_dssp             -----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHT------TTCCTTCCCSSTTCCTGGGCCTTS----TTHHHHHHHHH
T ss_pred             -----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCcccccCCCCCCHHHHHHHHh----cChHHHHHHHH
Confidence                 889999999999999999999999999996      889999986 6999999999  77    88999999999


Q ss_pred             HhccccCCC
Q 025505          187 RAIAQQSPQ  195 (252)
Q Consensus       187 ~~ga~~~~~  195 (252)
                      ++|++++..
T Consensus       144 ~~ga~~~~~  152 (229)
T 2vge_A          144 DVEQSMGLM  152 (229)
T ss_dssp             HHHHHTTTS
T ss_pred             HcCCCcccc
Confidence            999998753

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.94  E-value=6.1e-27  Score=166.50  Aligned_cols=126  Identities=21%  Similarity=0.269  Sum_probs=118.0

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      .+|..|+||||+|+..|+.+++++|++.|++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~~~~g~t~L~~   82 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSDPNV-KDHAGWTPLHEACNHGHLKVVELLLQHK-ALVNTTGYQNDSPLHD   82 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCGGGCCHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCc-CCCCCCCHHHHHHHcCCHHHHHHHHHcC-CcccCcCCCCCCHHHH
Confidence            5789999999999999999999999999999987 8999999999999999999999999998 7889999999999999


Q ss_pred             HHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           91 AVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      |+..++.+++++|++.++      +++..|..|.||||+|+..+..+++++|.+
T Consensus        83 A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~  130 (137)
T 3c5r_A           83 AAKNGHVDIVKLLLSYGA------SRNAVNIFGLRPVDYTDDESMKSLLLLPEK  130 (137)
T ss_dssp             HHHTTCHHHHHHHHHTTC------CTTCCCTTSCCGGGGCCCHHHHHHHSCC--
T ss_pred             HHHcCCHHHHHHHHHcCC------CCCCCCCCCCCHHHHHhhccHHHHHhhccc
Confidence            999999999999999998      789999999999999999888888887764

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.93  E-value=8.3e-27  Score=179.23  Aligned_cols=141  Identities=17%  Similarity=0.153  Sum_probs=118.5

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ++..|..|.||||+||..|+.++++.|++.|++++. .+..|.||||+|+..|+.+++++|++....+++.+|..|.|||
T Consensus        66 v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL  144 (222)
T 3ehr_A           66 VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNG-LDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTAL  144 (222)
T ss_dssp             HHHHEEEESCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHH
T ss_pred             ccccccccccccccccccCcHHHHHHHHhCCCCccc-cCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHH
Confidence            456678899999999999999999999999999987 8999999999999999999999999993388999999999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCC
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEG  162 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  162 (252)
                      |+|+..|+.+++++|++.++      +++.++..|.||||+|+..+..++++.|++      .++.....+.++
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~------~~~~~~~~~~~~  206 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGA------RTDLRNIEKKLAFDMATNAACASLLKKKQG------TDAVRTLSNAED  206 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTC------CSCCCCTTSCCHHHHCCSHHHHHHHC----------------------
T ss_pred             HHHHHcCCHHHHHHHHHcCC------CCccccCCCCCHHHHhcchhHHHHHHHHhc------cchhhhccchhh
Confidence            99999999999999999999      889999999999999999999999999996      666666655443

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.93  E-value=1e-26  Score=180.81  Aligned_cols=151  Identities=17%  Similarity=0.110  Sum_probs=130.0

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      +..|.||||+|+..|+.++++.|++.|++++. .|..|.||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+
T Consensus        34 ~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~-~d~~g~t~L~~A~~~g~~~~v~~Ll~~g-a~~~~~d~~g~tpL~~A~  111 (239)
T 1ycs_B           34 NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAA  111 (239)
T ss_dssp             ---CHHHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHH
T ss_pred             CchhhHHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHH
Confidence            46789999999999999999999999999988 8999999999999999999999999998 789999999999999999


Q ss_pred             HcCChHHHHHHHHHHhcccccccccccCCCCC-cHHHHH--HhCChHHHHHHHHhccccc---ceeeeeecccCCCCCHh
Q 025505           93 KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGN-TVLHLA--TLNKLKQIVELLIRENSNR---RIMIRINTVNKEGQTTL  166 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~-t~Lh~A--~~~~~~~~v~~Ll~~~~~~---~~~~~~~~~~~~g~t~l  166 (252)
                      ..++.+++++|+++++      +++..+..|. ||||+|  +..|+.+++++|++.++..   ..+......+..+.+++
T Consensus       112 ~~~~~~~v~~Ll~~ga------~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~  185 (239)
T 1ycs_B          112 SCNNVQVCKFLVESGA------AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDD  185 (239)
T ss_dssp             HTTCHHHHHHHHHTTC------CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTT
T ss_pred             HcCCHHHHHHHHHcCC------CcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCC
Confidence            9999999999999999      7888887777 999999  7889999999999744321   11222333467788888


Q ss_pred             Hhhhh
Q 025505          167 QLCNA  171 (252)
Q Consensus       167 ~~a~~  171 (252)
                      +++..
T Consensus       186 eLa~~  190 (239)
T 1ycs_B          186 ELPMK  190 (239)
T ss_dssp             BCCBC
T ss_pred             ccccc
Confidence            88776

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.93  E-value=1e-27  Score=197.45  Aligned_cols=160  Identities=13%  Similarity=0.092  Sum_probs=132.5

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHHHhhcCccccc--cccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc--ccccCCCCc
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCL--EVDNSSMIPLHRAALDGNSDVIRALVSICPES--LEKLTSNGE   85 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g~   85 (252)
                      ...+.+++||||+|+..|+.++|++|++.|+....  ..+..|.||||+|+..|+.+++++|+++++..  .+..+.+ .
T Consensus        86 ~~~g~~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~  164 (376)
T 2aja_A           86 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-Y  164 (376)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-H
T ss_pred             HHcCCCcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-C
Confidence            34566778999999999999999999999873211  14456789999999999999999999999420  2223333 9


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccc--cCCCCCcHHHHHH-hCChHHHHHHHHhcccccceeeeeecccCCC
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTW--KDKEGNTVLHLAT-LNKLKQIVELLIRENSNRRIMIRINTVNKEG  162 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~--~~~~g~t~Lh~A~-~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g  162 (252)
                      ||||+|+..|+.+++++|++.++      +++.  .|..|+||||+|+ ..|+.++|++|++      .|.       .|
T Consensus       165 TpLh~Aa~~G~~eiv~~Ll~~ga------~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~------~ga-------~~  225 (376)
T 2aja_A          165 HAFRLAAENGHLHVLNRLCELAP------TEATAMIQAENYYAFRWAAVGRGHHNVINFLLD------CPV-------ML  225 (376)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCG------GGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTT------SHH-------HH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCC------ccchhccCCCCCCHHHHHHHHCCCHHHHHHHHh------CCC-------cc
Confidence            99999999999999999999998      6665  7888999999999 9999999999996      442       28


Q ss_pred             CCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          163 QTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       163 ~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      .||+++|+.    .++.+++++|++.|++..
T Consensus       226 ~taL~~Aa~----~g~~evv~lL~~~ga~~~  252 (376)
T 2aja_A          226 AYAEIHEFE----YGEKYVNPFIARHVNRLK  252 (376)
T ss_dssp             HHHHHCTTT----TTTTTHHHHHHHHHHHHH
T ss_pred             chHHHHHHH----CCCHHHHHHHHhcCcccc
Confidence            999999998    888999999999999764

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.93  E-value=1.7e-26  Score=187.58  Aligned_cols=145  Identities=15%  Similarity=0.158  Sum_probs=119.4

Q ss_pred             ccccccccCCCChHHHHHHhCCC---HHHHHHHhhcC-ccccccccCCCCcHHHHHHH----cCCHHHHHHHHHhC----
Q 025505            6 PQLASIKNQRGETTMHLLSTDGD---AETVRIFGEIN-RELCLEVDNSSMIPLHRAAL----DGNSDVIRALVSIC----   73 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~~-~~~~~~~~~~g~t~Lh~A~~----~g~~~~v~~Ll~~~----   73 (252)
                      +.-++.+|..|+||||+|+..|+   .++++.|++.+ .+++. .+..|+||||+|+.    .|+.+++++|++.+    
T Consensus       154 Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~~~~-~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~  232 (327)
T 1sw6_A          154 GSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLIL-EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWI  232 (327)
T ss_dssp             TCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGE-ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhccccC-CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHH
Confidence            34477899999999999999998   67888888876 56666 89999999999999    89999999999873    


Q ss_pred             ---------------CccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHH
Q 025505           74 ---------------PESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQI  138 (252)
Q Consensus        74 ---------------~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~  138 (252)
                                     ..+++.++..|.||||.|+.      +++|++.        +++.+|..|+||||+|+..|+.++
T Consensus       233 ~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~------~~~Ll~~--------~~n~~d~~G~TpLh~A~~~g~~~~  298 (327)
T 1sw6_A          233 VKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD------LKWIIAN--------MLNAQDSNGDTCLNIAARLGNISI  298 (327)
T ss_dssp             HHGGGCCEEEC----------------CHHHHHCS------HHHHHHH--------TTTCCCTTSCCHHHHHHHHCCHHH
T ss_pred             hcccchHHHhhhhcccCCcccccccCCChhHHHHH------HHHHHHh--------CCCCCCCCCCCHHHHHHHcCCHHH
Confidence                           26788899999999999985      8889887        367889999999999999999999


Q ss_pred             HHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505          139 VELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus       139 v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      |++|++      .|++++.+|..|+||||+|+.
T Consensus       299 v~~Ll~------~Gad~~~~d~~G~TpL~~A~~  325 (327)
T 1sw6_A          299 VDALLD------YGADPFIANKSGLRPVDFGAG  325 (327)
T ss_dssp             HHHHHH------TTCCTTCCCTTSCCGGGGTCC
T ss_pred             HHHHHH------cCCCCcccCCCCCCHHHHHHh
Confidence            999996      899999999999999999986

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.93  E-value=7.8e-26  Score=157.78  Aligned_cols=117  Identities=17%  Similarity=0.165  Sum_probs=106.3

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAV   92 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~   92 (252)
                      +..|.||||+|+..|+.++++.|++.+.+++. .+..|.||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g-~~~~~~d~~g~tpL~~A~   81 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAV   81 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCCTTS-CCTTSSCHHHHHHHTTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCCcCc-cCCCCCcHHHHHHHcCCHHHHHHHHHcC-CCCCcCCCCCCCHHHHHH
Confidence            56789999999999999999999999999987 8999999999999999999999999998 788999999999999999


Q ss_pred             HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHH
Q 025505           93 KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQ  137 (252)
Q Consensus        93 ~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~  137 (252)
                      ..++.+++++|++.++      +++..|..|.||||+|+..+..+
T Consensus        82 ~~~~~~~v~~Ll~~ga------~~~~~~~~g~t~l~~A~~~~~~~  120 (123)
T 3aaa_C           82 YEGHVSCVKLLLSKGA------DKTVKGPDGLTAFEATDNQAIKA  120 (123)
T ss_dssp             HHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHCCCHHHHH
T ss_pred             HcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHhCCHHHHH
Confidence            9999999999999998      78999999999999995444333

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.93  E-value=2e-26  Score=172.13  Aligned_cols=127  Identities=7%  Similarity=0.028  Sum_probs=115.7

Q ss_pred             cccc-CCCChHHHHHHhCCCH----HHHHHHhhcCccccccccCCCCcHHHHHHHcCC------HHHHHHHHHhCCcccc
Q 025505           10 SIKN-QRGETTMHLLSTDGDA----ETVRIFGEINRELCLEVDNSSMIPLHRAALDGN------SDVIRALVSICPESLE   78 (252)
Q Consensus        10 ~~~d-~~g~t~L~~A~~~g~~----~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~------~~~v~~Ll~~~~~~~~   78 (252)
                      +..+ ..|+||||+|+..|+.    +++++|+++|++++. ++..|+||||+|+..|+      .+++++|+++| ++++
T Consensus        31 ~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gadvn~-~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G-adin  108 (186)
T 3t8k_A           31 EDKESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS-RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG-ADIT  108 (186)
T ss_dssp             SCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCCSSC-CCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT-CCSS
T ss_pred             ccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCCCCC-CCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC-CCCC
Confidence            3444 7799999999999975    599999999999998 89999999999999987      68899999999 7999


Q ss_pred             ccCCCCc-hHHHHHHHcCC-----hHHHHHHHH-HHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           79 KLTSNGE-TALHLAVKKSR-----SDAFEALVD-EAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        79 ~~~~~g~-t~L~~a~~~~~-----~~~~~~Ll~-~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      .+|..|. ||||+|+..+.     .+++++|++ .|+      +++.+|..|.||||+|+..++.+++++|++
T Consensus       109 ~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~ga------d~~~~d~~G~TpL~~A~~~~~~~~v~~L~~  175 (186)
T 3t8k_A          109 ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGL------QLLIKDKWGLTALEFVKRCQKPIALKMMED  175 (186)
T ss_dssp             SCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTC------CTTCCCTTSCCHHHHHHTTTCHHHHHHHHH
T ss_pred             ccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCC------CCcccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            9999999 99999999554     468999999 899      899999999999999999999999999996

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.92  E-value=4.6e-25  Score=176.96  Aligned_cols=137  Identities=18%  Similarity=0.154  Sum_probs=122.9

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCcccccc-----ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCccccccCCCCchH
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLE-----VDNSSMIPLHRAALD---GNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      ..++|+.|+..|+.+.++.|++.+++++..     .+..|.||||+|+..   |+.+++++|++++ .+++.+|..|.||
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-advn~~d~~G~Tp  229 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG-GHLDAKAADGNTA  229 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS-SCTTCCCTTCCCH
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC-CCCCCCCCCCCCH
Confidence            457799999999999999999999998753     488999999999997   8999999999999 7889999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      ||+|+..|+.+++++|++.++      +++.+|..|.||||+|+..++.+++++|++      .+++      .|.||||
T Consensus       230 Lh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~------~ga~------~g~tpLh  291 (301)
T 2b0o_E          230 LHYAALYNQPDCLKLLLKGRA------LVGTVNEAGETALDIARKKHHKECEELLEQ------AQAG------TFAFPLH  291 (301)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC------CCSCCCTTSCCHHHHHHHHTCHHHHHHHHH------HHHH------TTSSCCC
T ss_pred             HHHHHHcCCHHHHHHHHHcCC------CCCCcCCCCCCHHHHHHHcCCHHHHHHHHH------hcCC------CCCChhH
Confidence            999999999999999999999      889999999999999999999999999997      4443      6899999


Q ss_pred             hhhh
Q 025505          168 LCNA  171 (252)
Q Consensus       168 ~a~~  171 (252)
                      +|+.
T Consensus       292 ~A~~  295 (301)
T 2b0o_E          292 VDYS  295 (301)
T ss_dssp             ----
T ss_pred             HHHh
Confidence            9987

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.92  E-value=3.5e-25  Score=154.47  Aligned_cols=113  Identities=19%  Similarity=0.180  Sum_probs=104.3

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      .+..|.||||+|+..|+.+++++|++.+ .+++.++..|.||||+|+..++.+++++|++.++      +++.+|..|+|
T Consensus         3 ~~~~~~~~l~~A~~~~~~~~v~~ll~~~-~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~------~~~~~d~~g~t   75 (123)
T 3aaa_C            3 LGSMCDKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA------DINAPDKHHIT   75 (123)
T ss_dssp             ----CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTC------CTTCCCTTSCC
T ss_pred             cccccchHHHHHHHcCCHHHHHHHHHcC-CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCCC
Confidence            3567889999999999999999999999 6789999999999999999999999999999998      88999999999


Q ss_pred             HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      |||+|+..++.+++++|++      .|++++.+|..|.||+|+|..
T Consensus        76 pL~~A~~~~~~~~v~~Ll~------~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           76 PLLSAVYEGHVSCVKLLLS------KGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHhCC
Confidence            9999999999999999996      789999999999999999975

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.92  E-value=1.1e-24  Score=178.87  Aligned_cols=151  Identities=15%  Similarity=0.095  Sum_probs=118.1

Q ss_pred             ccccCCCChHHHHHHhC-CCHHHHHHHhhcCcccccccc--CCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCch
Q 025505           10 SIKNQRGETTMHLLSTD-GDAETVRIFGEINRELCLEVD--NSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGET   86 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t   86 (252)
                      +..+..+.|+||+|+.. |+.++++.|++.|++++. .+  ..|.||||+|+..|+.+++++|++++ .+++.+|..|.|
T Consensus       193 ~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gadvn~-~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~G-advn~~d~~G~T  270 (368)
T 3jue_A          193 DLGSLHPGALLFRASGHPPSLPTMADALAHGADVNW-VNGGQDNATPLIQATAANSLLACEFLLQNG-ANVNQADSAGRG  270 (368)
T ss_dssp             ----CCHHHHHHHHTSSSCCHHHHHHHHHTTCCTTC-CCTTTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCC
T ss_pred             ccccCCCCcHHHHHHHccCCHHHHHHHHHcCCCCCc-cccccCCCCHHHHHHHCCCHHHHHHHHHcC-CCCCCCCCCCCC
Confidence            33445667899999999 999999999999999987 66  88999999999999999999999998 789999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHh
Q 025505           87 ALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL  166 (252)
Q Consensus        87 ~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l  166 (252)
                      |||+|+..++.+++++|+++++      +++..|..|.||||+|+..++.+++++|++.+.   ...+....+..+.|++
T Consensus       271 pLh~A~~~g~~~~v~~LL~~Ga------d~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~---~~~~~~~~~~~~~t~l  341 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLKRGA------DLGARDSEGRDPLTIAMETANADIVTLLRLAKM---REAEAAQGQAGDETYL  341 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC-------------------
T ss_pred             HHHHHHHcCcHHHHHHHHHCcC------CCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCC---CcccccccCCCCCCHH
Confidence            9999999999999999999999      889999999999999999999999999997443   2334445567788888


Q ss_pred             Hhhhh
Q 025505          167 QLCNA  171 (252)
Q Consensus       167 ~~a~~  171 (252)
                      +++..
T Consensus       342 ~i~~~  346 (368)
T 3jue_A          342 DIFRD  346 (368)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            88654

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=2.8e-25  Score=170.67  Aligned_cols=167  Identities=24%  Similarity=0.232  Sum_probs=129.6

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCc--------------cccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINR--------------ELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPES   76 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~--------------~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~   76 (252)
                      ..+-.++++.+++...|....+..+.+.+.              ......+..|.||||+|+..|+.+++++|++.+ .+
T Consensus        20 l~d~~~~~~~el~~~~Gd~~~v~~~~~~~w~~~~~~g~~gl~p~~~v~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~   98 (222)
T 3ehr_A           20 LYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQAESIDNPLHEAAKRGNLSWLRECLDNR-VG   98 (222)
T ss_dssp             SSCCCCSSTTBCCCCTTCEEEEEECCSSSEEEEEETTEEEEEEHHHHHHHEEEESCHHHHHHHHTCHHHHHHHHHTT-CC
T ss_pred             eCCcCCCCCCcccccCCCEEEEeccccchhHhcccCCcceeechhhccccccccccccccccccCcHHHHHHHHhCC-CC
Confidence            345566666776666665433322221110              000124567899999999999999999999998 78


Q ss_pred             ccccCCCCchHHHHHHHcCChHHHHHHHHH-HhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeee
Q 025505           77 LEKLTSNGETALHLAVKKSRSDAFEALVDE-AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRI  155 (252)
Q Consensus        77 ~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~-~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~  155 (252)
                      ++.++..|.||||+|+..|+.+++++|++. ++      +++.+|..|+||||+|+..|+.+++++|++      .|+++
T Consensus        99 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~------~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~------~ga~~  166 (222)
T 3ehr_A           99 VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNI------ELNQQNKLGDTALHAAAWKGYADIVQLLLA------KGART  166 (222)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTC------CCCCCCTTSCCHHHHHHHHTCHHHHHHHHH------HTCCS
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCC------CccccCCCCCCHHHHHHHcCCHHHHHHHHH------cCCCC
Confidence            899999999999999999999999999998 77      789999999999999999999999999996      89999


Q ss_pred             ecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          156 NTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       156 ~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +.+|..|.|||++|+.    .+..++++.|++.|+....
T Consensus       167 ~~~~~~g~t~l~~A~~----~~~~~~l~~l~~~~~~~~~  201 (222)
T 3ehr_A          167 DLRNIEKKLAFDMATN----AACASLLKKKQGTDAVRTL  201 (222)
T ss_dssp             CCCCTTSCCHHHHCCS----HHHHHHHC-----------
T ss_pred             ccccCCCCCHHHHhcc----hhHHHHHHHHhccchhhhc
Confidence            9999999999999998    9999999999999998865

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.91  E-value=1.6e-26  Score=172.40  Aligned_cols=128  Identities=19%  Similarity=0.202  Sum_probs=114.2

Q ss_pred             cCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccC-CCCCc
Q 025505           47 DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD-KEGNT  125 (252)
Q Consensus        47 ~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t  125 (252)
                      +..|.||||+|+..|+.++++.|++ + .+++.+|..|.||||+|+..|+.+++++|++.++      +++..+ ..|+|
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~~~~~g~t  112 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGA------DLDHRDMRGGLT  112 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-T-SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCSSSSCC
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-c-CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCcCCCCCCCC
Confidence            5578999999999999999999999 6 7889999999999999999999999999999998      788888 88999


Q ss_pred             HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcccc
Q 025505          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~  192 (252)
                      |||+|+..|+.+++++|++      .|++++.+|..|+||||+|+.    .++.+....++..++..
T Consensus       113 pL~~A~~~~~~~~v~~Ll~------~ga~~~~~d~~g~tpl~~A~~----~~~~~~~~~~l~~a~~~  169 (183)
T 3deo_A          113 ALHMAAGYVRPEVVEALVE------LGADIEVEDERGLTALELARE----ILKTTPKGNPMQFGRRI  169 (183)
T ss_dssp             HHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTSCCHHHHHHH----HHHTCCCCSHHHHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHH------cCCCCcCCCCCCCCHHHHHHH----hccCcccccHHHHHHHc
Confidence            9999999999999999996      889999999999999999987    65555555555555443

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.91  E-value=2e-23  Score=165.60  Aligned_cols=168  Identities=19%  Similarity=0.182  Sum_probs=140.8

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCcccc--------------------c-----cc-----cCCCCcHHHHHHHc
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELC--------------------L-----EV-----DNSSMIPLHRAALD   60 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~--------------------~-----~~-----~~~g~t~Lh~A~~~   60 (252)
                      ..|..+.++|+++...|+..+.+++...-+...                    +     ..     .....++|+.|+..
T Consensus        61 ~~d~~~~~~l~~~~~~GN~~~n~i~e~~l~~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~~~~~~~l~~l~~a~~~  140 (278)
T 1dcq_A           61 TLDVLGTSELLLAKNIGNAGFNEIMECCLPSEDPVKPNPGSDMIARKDYITAKYMERRYARKKHADTAAKLHSLCEAVKT  140 (278)
T ss_dssp             TTSCCCGGGGHHHHHSCHHHHHHHHTTTCCSSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCSSSHHHHHHHHHHHHHT
T ss_pred             ecCCCCHHHHHHHHHcCcHHHHHHHHhhCChhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccccccchhhhhhhhHhhh
Confidence            467889999999999999877776643221110                    0     00     01123689999999


Q ss_pred             CCHHHHHHHHHhCCcc-----ccccCCCCchHHHHHHHc---CChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHh
Q 025505           61 GNSDVIRALVSICPES-----LEKLTSNGETALHLAVKK---SRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL  132 (252)
Q Consensus        61 g~~~~v~~Ll~~~~~~-----~~~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~  132 (252)
                      |+.+.++.+++.+...     ++..+..|.||||+|+..   ++.+++++|++.++      +++.+|..|+||||+|+.
T Consensus       141 ~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga------~in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          141 RDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG------NLDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             TCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS------CTTCCCTTCCCHHHHHHH
T ss_pred             cccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCC------CccccCCCCCCHHHHHHH
Confidence            9999999999998532     344588999999999999   89999999999999      899999999999999999


Q ss_pred             CChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       133 ~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .|+.+++++|++      .|++++.+|..|.||||+|+.    .++.+++++|+++|++...
T Consensus       215 ~g~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~----~~~~~~v~~Ll~~ga~~~~  266 (278)
T 1dcq_A          215 TDNAECLKLLLR------GKASIEIANESGETPLDIAKR----LKHEHCEELLTQALSGRFN  266 (278)
T ss_dssp             TTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTCCC
T ss_pred             cCCHHHHHHHHH------cCCCCCCccCCCCCHHHHHHH----cCCHHHHHHHHHcCCCCCC
Confidence            999999999996      899999999999999999999    8899999999999997643

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=5.5e-25  Score=181.16  Aligned_cols=121  Identities=12%  Similarity=0.127  Sum_probs=104.1

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccc---cccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc--cCCCCc
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINREL---CLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEK--LTSNGE   85 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~---~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~--~~~~g~   85 (252)
                      ..|..|.||||+||..|+.++|++|+++|++.   +. .+.. .||||+|+..|+.+++++|++++ .+++.  .+..|.
T Consensus       123 ~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i-~~~~-~TpLh~Aa~~G~~eiv~~Ll~~g-a~~~~~~~d~~g~  199 (376)
T 2aja_A          123 VIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMI-QAEN-YHAFRLAAENGHLHVLNRLCELA-PTEATAMIQAENY  199 (376)
T ss_dssp             --CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHH-SHHH-HHHHHHHHHTTCHHHHHHHHHSC-GGGHHHHHHHHHH
T ss_pred             HhccCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccc-CCCC-CCHHHHHHHCCCHHHHHHHHHcC-CccchhccCCCCC
Confidence            45567889999999999999999999999752   22 2222 89999999999999999999999 56665  888899


Q ss_pred             hHHHHHH-HcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhccc
Q 025505           86 TALHLAV-KKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (252)
Q Consensus        86 t~L~~a~-~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  147 (252)
                      ||||+|+ ..|+.+++++|++.+.      .       |.||||+|+..|+.+++++|++.++
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga------~-------~~taL~~Aa~~g~~evv~lL~~~ga  249 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPV------M-------LAYAEIHEFEYGEKYVNPFIARHVN  249 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHH------H-------HHHHHHCTTTTTTTTHHHHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCC------c-------cchHHHHHHHCCCHHHHHHHHhcCc
Confidence            9999999 9999999999999765      2       7899999999999999999998664

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.89  E-value=4.8e-25  Score=171.84  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=124.4

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHH
Q 025505           14 QRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (252)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~   93 (252)
                      ..+.+++++++..|+.+.+..+...+.+    .+..|.||||+|+..|+.++++.|++ + .+++.+|..|.||||+|+.
T Consensus        13 ~~~~~~~l~~~~~g~~~~~~~~~~~~~~----~~~~g~t~L~~A~~~g~~~~v~~Ll~-~-~~~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           13 GEGAMEYLIEWKDGHSPSWVPSSYIAAD----VVSEYETPWWTAARKADEQALSQLLE-D-RDVDAVDENGRTALLFVAG   86 (244)
T ss_dssp             TTTEEEEEEEESSCCCCEEEEGGGSCHH----HHHHHHHHHHHHHTTTCHHHHHHTTT-T-CCTTCBCTTSCBHHHHHHH
T ss_pred             CCCccHHHHHHHcCCCcccccccccccc----cccCCCCHHHHHHHcCCHHHHHHHHc-C-CCCCCcCCCCCCHHHHHHH
Confidence            5677888888888887776665554444    34578999999999999999999999 6 7889999999999999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccC-CCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505           94 KSRSDAFEALVDEAKNHRKEHLFTWKD-KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~-~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      .|+.+++++|+++++      +++..+ ..|+||||+|+..|+.+++++|++      .|++++.+|..|.||||+|+.
T Consensus        87 ~g~~~~v~~Ll~~ga------~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~------~ga~~~~~d~~g~t~l~~A~~  153 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGA------DLDHRDMRGGLTALHMAAGYVRPEVVEALVE------LGADIEVEDERGLTALELARE  153 (244)
T ss_dssp             HTCHHHHHHHHHTTC------CTTCCCSSSCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCC------CCCcCCCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCcHHHHHHH
Confidence            999999999999999      788888 789999999999999999999996      799999999999999999986

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.88  E-value=1.5e-22  Score=160.56  Aligned_cols=124  Identities=19%  Similarity=0.165  Sum_probs=114.9

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCcccccc-----ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCccccccCCCCchH
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLE-----VDNSSMIPLHRAALD---GNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      ..++|+.|+..|+.+.+..+++.|.+++..     .+..|.||||+|+..   |+.+++++|++++ .+++.+|..|.||
T Consensus       130 ~l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g-a~in~~d~~g~Tp  208 (278)
T 1dcq_A          130 KLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTA  208 (278)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCH
T ss_pred             hhhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC-CCccccCCCCCCH
Confidence            347899999999999999999999986432     478899999999999   8999999999999 7899999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcc
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  146 (252)
                      ||+|+..|+.+++++|+++|+      +++.+|..|.||||+|+..|+.+++++|++.+
T Consensus       209 Lh~A~~~g~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  261 (278)
T 1dcq_A          209 LHYCCLTDNAECLKLLLRGKA------SIEIANESGETPLDIAKRLKHEHCEELLTQAL  261 (278)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCC------CCCCccCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999      89999999999999999999999999999743

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.88  E-value=1.1e-22  Score=134.67  Aligned_cols=92  Identities=27%  Similarity=0.479  Sum_probs=74.6

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHc
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKK   94 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~   94 (252)
                      +|+||||+|+..|+.+++++|++.|++++. .|..|.||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~-~d~~g~t~L~~A~~~~~~~~v~~Ll~~g-a~~~~~d~~g~t~l~~A~~~   78 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA-KDKNGRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARN   78 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHc
Confidence            478888888888888888888888888876 7888888888888888888888888887 67777888888888888888


Q ss_pred             CChHHHHHHHHHHh
Q 025505           95 SRSDAFEALVDEAK  108 (252)
Q Consensus        95 ~~~~~~~~Ll~~~~  108 (252)
                      ++.+++++|++.|+
T Consensus        79 ~~~~~~~~Ll~~ga   92 (93)
T 1n0q_A           79 GHLEVVKLLLEAGA   92 (93)
T ss_dssp             TCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHcCC
Confidence            88888888887765

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=3.5e-22  Score=160.18  Aligned_cols=126  Identities=23%  Similarity=0.272  Sum_probs=116.9

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCccccc------cCCCCchHHHHHHHc---CChHHHHHHHHHHhcccccccccccC
Q 025505           50 SMIPLHRAALDGNSDVIRALVSICPESLEK------LTSNGETALHLAVKK---SRSDAFEALVDEAKNHRKEHLFTWKD  120 (252)
Q Consensus        50 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~------~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~  120 (252)
                      ..++|+.|+..|+.+.++.|++.+ .+++.      .+..|.||||+|+..   ++.+++++|++.++      +++.+|
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g-~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga------dvn~~d  223 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG-QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGG------HLDAKA  223 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT-CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSS------CTTCCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC-CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCC------CCCCCC
Confidence            346799999999999999999998 55665      688999999999997   89999999999999      889999


Q ss_pred             CCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcccc
Q 025505          121 KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       121 ~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~  192 (252)
                      ..|+||||+|+..|+.+++++|++      .|++++.+|..|.||||+|+.    .++.+++++|+++|++.
T Consensus       224 ~~G~TpLh~A~~~g~~~~v~~Ll~------~gad~~~~d~~G~TpL~~A~~----~~~~~iv~~Ll~~ga~~  285 (301)
T 2b0o_E          224 ADGNTALHYAALYNQPDCLKLLLK------GRALVGTVNEAGETALDIARK----KHHKECEELLEQAQAGT  285 (301)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHH------TTCCCSCCCTTSCCHHHHHHH----HTCHHHHHHHHHHHHHT
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHH------cCCCCCCcCCCCCCHHHHHHH----cCCHHHHHHHHHhcCCC
Confidence            999999999999999999999996      899999999999999999999    88999999999999984

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.87  E-value=2.1e-22  Score=133.25  Aligned_cols=88  Identities=33%  Similarity=0.491  Sum_probs=52.2

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHH
Q 025505           50 SMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHL  129 (252)
Q Consensus        50 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~  129 (252)
                      |+||||+|+..|+.+++++|++.+ .+++.+|..|.||||+|+..++.+++++|++.++      +++.+|..|+||||+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g-~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~t~l~~   74 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG-ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA------DVNAKDKNGRTPLHL   74 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CCCccCCCCCCHHHH
Confidence            556666666666666666666655 4555556666666666666666666666665555      455555556666666


Q ss_pred             HHhCChHHHHHHHHh
Q 025505          130 ATLNKLKQIVELLIR  144 (252)
Q Consensus       130 A~~~~~~~~v~~Ll~  144 (252)
                      |+..++.+++++|++
T Consensus        75 A~~~~~~~~~~~Ll~   89 (93)
T 1n0q_A           75 AARNGHLEVVKLLLE   89 (93)
T ss_dssp             HHHTTCHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHH
Confidence            666666666666654

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.87  E-value=7.8e-23  Score=140.73  Aligned_cols=108  Identities=19%  Similarity=0.290  Sum_probs=94.4

Q ss_pred             cccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           11 IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        11 ~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      .+|+.|+||||+||..|+.+++++|++.+++++. .+..|.||||+|+..|+.+++++|++++ .+++.++..|.||||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~-~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNA-RSKDGNTPLHLAAKNGHAEIVKLLLAKG-ADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSC-CCSSSCCTTHHHHTTTCHHHHHHHTTTT-CCTTCCCTTCCCTTHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC-cCCCCCCHHHHHHHcCcHHHHHHHHHcC-CCCcccCCCCCCHHHH
Confidence            5688899999999999999999999999988887 8888999999999999999999999988 6788888899999999


Q ss_pred             HHHcCChHHHHHHHHHHhcccccccccccCCCCCcH
Q 025505           91 AVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTV  126 (252)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~  126 (252)
                      |+..++.+++++|+++++      +++..+..|.+|
T Consensus        82 A~~~~~~~~~~~Ll~~ga------~~n~~~~~~~~~  111 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKGA------DVNARSWGSSHH  111 (115)
T ss_dssp             HHTTTCHHHHHHHHTTSS------SHHHHSCCCC--
T ss_pred             HHHCCCHHHHHHHHHcCC------CCCcCCcccccc
Confidence            999999999999999888      788888888776

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=4.4e-22  Score=163.34  Aligned_cols=128  Identities=17%  Similarity=0.155  Sum_probs=117.8

Q ss_pred             CCCcHHHHHHHc-CCHHHHHHHHHhCCccccccC--CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           49 SSMIPLHRAALD-GNSDVIRALVSICPESLEKLT--SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        49 ~g~t~Lh~A~~~-g~~~~v~~Ll~~~~~~~~~~~--~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      .+.|+||+|+.. |+.++++.|++++ .+++..+  ..|.||||+|+..++.+++++|+++++      +++..|..|+|
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~G-advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Ga------dvn~~d~~G~T  270 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHG-ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGA------NVNQADSAGRG  270 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTT-CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCC
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcC-CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCC------CCCCCCCCCCC
Confidence            445799999999 9999999999999 6788887  899999999999999999999999999      89999999999


Q ss_pred             HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      |||+|+..|+.+++++|++      .|++++.+|..|.||||+|+.    .++.+++++|++.+....
T Consensus       271 pLh~A~~~g~~~~v~~LL~------~Gad~~~~d~~G~TpL~~A~~----~g~~~iv~lLl~~~~~~~  328 (368)
T 3jue_A          271 PLHHATILGHTGLACLFLK------RGADLGARDSEGRDPLTIAME----TANADIVTLLRLAKMREA  328 (368)
T ss_dssp             HHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHC---
T ss_pred             HHHHHHHcCcHHHHHHHHH------CcCCCCCcCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCcc
Confidence            9999999999999999996      899999999999999999999    889999999999986554

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.86  E-value=1.9e-22  Score=138.78  Aligned_cols=108  Identities=27%  Similarity=0.352  Sum_probs=100.5

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      .|..|.||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..++.+++++|++.++      +++..|..|+|
T Consensus         5 ~d~~g~t~L~~A~~~~~~~~~~~Ll~~g-~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~------~~~~~d~~g~t   77 (115)
T 2l6b_A            5 GSKDGNTPLHNAAKNGHAEEVKKLLSKG-ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA------DVNARSKDGNT   77 (115)
T ss_dssp             CSCSSCCHHHHHHHHTCHHHHHHHTTTT-CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTC------CTTCCCTTCCC
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC------CCcccCCCCCC
Confidence            7889999999999999999999999998 6789999999999999999999999999999998      78899999999


Q ss_pred             HHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHh
Q 025505          126 VLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL  166 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l  166 (252)
                      |||+|+..++.+++++|++      .|++++.++..|.+|-
T Consensus        78 pl~~A~~~~~~~~~~~Ll~------~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           78 PEHLAKKNGHHEIVKLLDA------KGADVNARSWGSSHHH  112 (115)
T ss_dssp             TTHHHHTTTCHHHHHHHHT------TSSSHHHHSCCCC---
T ss_pred             HHHHHHHCCCHHHHHHHHH------cCCCCCcCCccccccc
Confidence            9999999999999999996      8999999999999875

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.83  E-value=1.9e-20  Score=127.69  Aligned_cols=99  Identities=20%  Similarity=0.260  Sum_probs=80.5

Q ss_pred             ccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCC
Q 025505            3 RLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTS   82 (252)
Q Consensus         3 ~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~   82 (252)
                      ...|......|.+|.||||+|+..|+.+++++|++.+++++. .|..|.||||+|+..|+.+++++|++++ .+++.+|.
T Consensus        11 ~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~-~d~~g~tpLh~A~~~~~~~~v~~Ll~~g-a~~~~~d~   88 (110)
T 2zgd_A           11 SGLVPRGSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAA-KDKNGSTPLHLAARNGHLEVVKLLLEAG-ADVXAQDK   88 (110)
T ss_dssp             CC---------CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCT
T ss_pred             cCCCCcccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCc-cCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCcccccc
Confidence            345777788889999999999999999999999999998887 7889999999999999999999999988 67888888


Q ss_pred             CCchHHHHHHHcCChHHHHHH
Q 025505           83 NGETALHLAVKKSRSDAFEAL  103 (252)
Q Consensus        83 ~g~t~L~~a~~~~~~~~~~~L  103 (252)
                      .|.||||+|+..++.+++++|
T Consensus        89 ~g~tpl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           89 FGKTAFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             TSCCHHHHHHHHTCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHh
Confidence            999999999999999988876

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.78  E-value=4.3e-19  Score=120.96  Aligned_cols=90  Identities=24%  Similarity=0.313  Sum_probs=84.4

Q ss_pred             ccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCc
Q 025505           46 VDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNT  125 (252)
Q Consensus        46 ~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t  125 (252)
                      .+.+|.||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..++.+++++|++.++      +++..|..|+|
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g-~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga------~~~~~d~~g~t   92 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANG-ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGA------DVXAQDKFGKT   92 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTSCC
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcC-CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCC------CccccccCCCc
Confidence            6788999999999999999999999998 7889999999999999999999999999999998      78999999999


Q ss_pred             HHHHHHhCChHHHHHHH
Q 025505          126 VLHLATLNKLKQIVELL  142 (252)
Q Consensus       126 ~Lh~A~~~~~~~~v~~L  142 (252)
                      |||+|+..++.+++++|
T Consensus        93 pl~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           93 AFDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHh
Confidence            99999999999999976

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	252
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-09
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-08
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-06
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	9e-09
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-04
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	7e-04
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	3e-07
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-05
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-08
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	6e-08
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-04
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	4e-04
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	6e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-06
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	4e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	5e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-04
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	7e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	9e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	0.003
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	7e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	0.003

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 40/184 (21%), Positives = 70/184 (38%), Gaps = 14/184 (7%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSD 64
           +   A+ ++ +G T +HL + +G AE V +         L  + S + PLH  A +G+  
Sbjct: 220 YGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVP 278

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGN 124
           V   L+      ++  T  G T LH+A         +         + +     K K G 
Sbjct: 279 VADVLIKHGVM-VDATTRMGYTPLHVASHYGNIKLVK------FLLQHQADVNAKTKLGY 331

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWI 184
           + LH A       IV LL++  ++       N V+ +G T L +       S    +  +
Sbjct: 332 SPLHQAAQQGHTDIVTLLLKNGAS------PNEVSSDGTTPLAIAKRLGYISVTDVLKVV 385

Query: 185 IQRA 188
               
Sbjct: 386 TDET 389

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 3e-11
 Identities = 24/98 (24%), Positives = 42/98 (42%), Gaps = 7/98 (7%)

Query: 51  MIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNH 110
           + PLH A+  G+  +++ L+     S        ET LH+A +   ++  + L+      
Sbjct: 1   LTPLHVASFMGHLPIVKNLLQ-RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK- 58

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
                   K K+  T LH A       +V+LL+  N+N
Sbjct: 59  -----VNAKAKDDQTPLHCAARIGHTNMVKLLLENNAN 91

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 1e-09
 Identities = 35/193 (18%), Positives = 64/193 (33%), Gaps = 43/193 (22%)

Query: 18  TTMHLLSTDGDAETVRIF----GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSIC 73
           T +H+ S  G    V+         N       +     PLH AA  G+++V + L+   
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPN-----VSNVKVETPLHMAARAGHTEVAKYLLQ-N 55

Query: 74  PESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTW--------------- 118
              +     + +T LH A +   ++  + L++   N                        
Sbjct: 56  KAKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETV 115

Query: 119 ------------KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTL 166
                         K+G T LH+A      ++ ELL+  +++       N   K G T L
Sbjct: 116 LALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAH------PNAAGKNGLTPL 169

Query: 167 QLCNANSQDSAFK 179
            +   ++     K
Sbjct: 170 HVAVHHNNLDIVK 182

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 8/152 (5%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSD 64
                ++ N+ G T +HL++ +G      +  +    +          PLH A+  GN  
Sbjct: 253 KQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVD-ATTRMGYTPLHVASHYGNIK 311

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGN 124
           +++  +      +   T  G + LH A ++  +D    L+    +  +         +G 
Sbjct: 312 LVK-FLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNE------VSSDGT 364

Query: 125 TVLHLATLNKLKQIVELLIRENSNRRIMIRIN 156
           T L +A       + ++L         ++  +
Sbjct: 365 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSD 396

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 2e-06
 Identities = 36/192 (18%), Positives = 67/192 (34%), Gaps = 45/192 (23%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
           + N + ET +H+ +  G  E  +   +   ++          PLH AA  G++++++ L+
Sbjct: 28  VSNVKVETPLHMAARAGHTEVAKYLLQNKAKVN-AKAKDDQTPLHCAARIGHTNMVKLLL 86

Query: 71  SICPE--------------------------------SLEKLTSNGETALHLAVKKSRSD 98
                                                S   +T  G T LH+A K  +  
Sbjct: 87  ENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVR 146

Query: 99  AFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV 158
             E L++      ++       K G T LH+A  +    IV+LL+    +       ++ 
Sbjct: 147 VAELLLE------RDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGS------PHSP 194

Query: 159 NKEGQTTLQLCN 170
              G T L +  
Sbjct: 195 AWNGYTPLHIAA 206

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.7 bits (125), Expect = 9e-09
 Identities = 23/172 (13%), Positives = 51/172 (29%), Gaps = 24/172 (13%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEV---DNSSMIPLHRAALDGNSDVIR 67
             +  GE+ +       +      F  +   L   +   D+ +   LH   +        
Sbjct: 135 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 194

Query: 68  ALVSICPES------------LEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHL 115
           A      +             ++  T+  E+  +    + +    E L          ++
Sbjct: 195 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL---KWIIANM 251

Query: 116 FTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ 167
              +D  G+T L++A       IV+ L+   ++          NK G   + 
Sbjct: 252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGAD------PFIANKSGLRPVD 297

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 10/161 (6%)

Query: 29  AETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL 88
            E    F      L + VD     PLH      N ++++ LV     +     + GE+ L
Sbjct: 86  QEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVK-HGSNRLYGDNMGESCL 144

Query: 89  HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN 148
             AVK   +  +++   EA           +D    T+LH   +           +   +
Sbjct: 145 VKAVKSVNN--YDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLD 202

Query: 149 RRIM-------IRINTVNKEGQTTLQLCNANSQDSAFKEIG 182
             +          I +   E ++     N   +DS  + + 
Sbjct: 203 ILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLD 243

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.1 bits (87), Expect = 6e-04
 Identities = 11/83 (13%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIF--GEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
                E+  +  + +     +       I   +    D++    L+ AA  GN  ++ AL
Sbjct: 219 GTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDAL 278

Query: 70  VSICPESLEKLTSNGETALHLAV 92
           +    +       +G   +    
Sbjct: 279 LDYGAD-PFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 47  DNSSMIPLHRAALDGNSDVIRALVS--ICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
            N      +    +    ++  L    I    L    SNG+T L++A +       +AL+
Sbjct: 220 TNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALL 279

Query: 105 DEAKNHRKEHLFTWKDKEGNTVLHLA 130
           D   +          +K G   +   
Sbjct: 280 DYGAD------PFIANKSGLRPVDFG 299

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 50.5 bits (119), Expect = 4e-08
 Identities = 22/98 (22%), Positives = 39/98 (39%), Gaps = 6/98 (6%)

Query: 47  DNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDE 106
                  LH AA   N  +++ LV     + +K   +G+T + LA ++ R +    L+ +
Sbjct: 184 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQ 243

Query: 107 AKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
             +          D   +T   LA  N    IV++  R
Sbjct: 244 GAS------VEAVDATDHTARQLAQANNHHNIVDIFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 2e-07
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 1/99 (1%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSD 64
                  +  +G T +H  +   +   V+           + D     P+  AA +G  +
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIE 235

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEAL 103
           V+  L+      +E + +   TA  LA   +  +  +  
Sbjct: 236 VVMYLIQQGAS-VEAVDATDHTARQLAQANNHHNIVDIF 273

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 47.8 bits (112), Expect = 3e-07
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 85  ETALHLAVKKSRSDA-FEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
           E+ + L  + + S A  E +  E+ N           +   TVLH    N   +  E LI
Sbjct: 1   ESPIKLHTEAAGSYAITEPITRESVNIID-------PRHNRTVLHWIASNSSAEKSEDLI 53

Query: 144 RENSNRRIM--IRINTVNKEGQTTLQLCNAN 172
              +   I     +N ++ +  T L L    
Sbjct: 54  VHEAKECIAAGADVNAMDCDENTPLMLAVLA 84

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 22/96 (22%), Positives = 39/96 (40%), Gaps = 11/96 (11%)

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
                +     G TALH A + S     + LV E  ++        +D++G T + LA  
Sbjct: 176 GAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSN-----KDKQDEDGKTPIMLAAQ 230

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL 168
               ++V  LI++ ++      +  V+    T  QL
Sbjct: 231 EGRIEVVMYLIQQGAS------VEAVDATDHTARQL 260

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 39.3 bits (90), Expect = 2e-04
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 5/79 (6%)

Query: 52  IPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHR 111
           I LH  A  G+  +   +       ++    +  T LH     S ++  E L+       
Sbjct: 4   IKLHTEAA-GSYAITEPITRESVNIID--PRHNRTVLHWIASNSSAEKSEDLIVHEAKEC 60

Query: 112 KEHLF--TWKDKEGNTVLH 128
                     D + NT L 
Sbjct: 61  IAAGADVNAMDCDENTPLM 79

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 5e-08
 Identities = 21/165 (12%), Positives = 43/165 (26%), Gaps = 33/165 (20%)

Query: 54  LHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKE 113
           +   A  G  + ++  +        +   +  TALH A     ++  E L+        +
Sbjct: 7   VCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDK 66

Query: 114 HLFTW---------------------------KDKEGNTVLHLATLNKLKQIVELLIREN 146
               W                            ++ G T LH A      +I  +L+   
Sbjct: 67  DDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 126

Query: 147 SNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQ 191
           +N       +  +    T +    A         + +       Q
Sbjct: 127 AN------PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQ 165

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 13/124 (10%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
            V+ +   PLH AA     ++   L+       +       TA+H A  K        L 
Sbjct: 98  AVNQNGCTPLHYAASKNRHEIAVMLLEGGAN-PDAKDHYEATAMHRAAAKGNLKMIHIL- 155

Query: 105 DEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQT 164
                   +     +D EGNT LHLA   +  +  +LL+ + ++      I   NKE +T
Sbjct: 156 -----LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGAS------IYIENKEEKT 204

Query: 165 TLQL 168
            LQ+
Sbjct: 205 PLQV 208

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 2e-05
 Identities = 32/133 (24%), Positives = 55/133 (41%), Gaps = 9/133 (6%)

Query: 11  IKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALV 70
             NQ G T +H  ++    E   +  E         D+     +HRAA  GN  +I  L+
Sbjct: 98  AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPD-AKDHYEATAMHRAAAKGNLKMIHILL 156

Query: 71  SICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLA 130
                +  +  + G T LHLA  + R +  + LV +  +         ++KE  T L +A
Sbjct: 157 YYKASTNIQ-DTEGNTPLHLACDEERVEEAKLLVSQGASIYI------ENKEEKTPLQVA 209

Query: 131 TLNKLKQIVELLI 143
               L  I++ ++
Sbjct: 210 K-GGLGLILKRMV 221

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 6e-08
 Identities = 32/147 (21%), Positives = 57/147 (38%), Gaps = 8/147 (5%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSD 64
             +      + G T +   +  G  E ++I  +         DN     L  A L  +  
Sbjct: 137 TKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS 196

Query: 65  VIRALVSICPE---SLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDK 121
            + A+  +  +    +      G+T L LAV+K      + L+++      +      D 
Sbjct: 197 DVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIND-----TDS 251

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSN 148
           +G T L LA   KLK+I ELL +  ++
Sbjct: 252 DGKTALLLAVELKLKKIAELLCKRGAS 278

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 15/66 (22%), Positives = 26/66 (39%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
            L +A  + + D+++ L+        +    G T LH AV+ SR D  E L+    +   
Sbjct: 8   LLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL 67

Query: 113 EHLFTW 118
                 
Sbjct: 68  RKKNGA 73

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 4e-04
 Identities = 25/178 (14%), Positives = 55/178 (30%), Gaps = 11/178 (6%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
           + + G T +H        + V +   +       +   +       A    S  +  L  
Sbjct: 35  EEEGGWTPLHNAVQMSREDIVELL--LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL 92

Query: 72  ICPESLEKLTSNGETALHLAVKKSR----SDAFEALVDEAKNHRKEHLFTWKDKEGNTVL 127
                + +    G TA   A    +       ++   +     + +       K G T L
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152

Query: 128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWII 185
             A      +++++L+ E         +N  +  G+  L     +S DS  + I  ++
Sbjct: 153 MDAAEKGHVEVLKILLDEMG-----ADVNACDNMGRNALIHALLSSDDSDVEAITHLL 205

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.7 bits (117), Expect = 6e-08
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 8/110 (7%)

Query: 46  VDNSSMIPLHRAALDGNSDVIRALVSIC--PESLEKLTSNGETALHLAVKKSRSDAFEAL 103
           V       LH A +  +   +  L+      E L+     G+TALHLA            
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGE------A 58

Query: 104 VDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMI 153
               K +         ++ G+T LHLA   +      +L++   +     
Sbjct: 59  STVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDA 108

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.0 bits (110), Expect = 6e-07
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 3/55 (5%)

Query: 115 LFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
           +F +  ++G+T LHLA +++ +  ++ L+  ++       ++  N  GQT L L 
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLA 52

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 3/57 (5%)

Query: 77  LEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLN 133
              +T +G+TALHLAV        + L+  +  H        ++  G T LHLA + 
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGH---EYLDLQNDLGQTALHLAAIL 55

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.7 bits (117), Expect = 8e-08
 Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 7/102 (6%)

Query: 45  EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALV 104
               S    LH AA  G ++V++ L+    + +     +G T LH A    + +A   LV
Sbjct: 194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYD-VNIKDYDGWTPLHAAAHWGKEEACRILV 252

Query: 105 DEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN 146
           +   +          +K G T   +A  + L  + EL  ++N
Sbjct: 253 ENLCD------MEAVNKVGQTAFDVADEDILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 22/100 (22%), Positives = 41/100 (41%), Gaps = 12/100 (12%)

Query: 73  CPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATL 132
              +  +   +G TALH+A  K  ++  + L+    +         KD +G T LH A  
Sbjct: 188 GHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYD------VNIKDYDGWTPLHAAAH 241

Query: 133 NKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNAN 172
              ++   +L+    +      +  VNK GQT   + + +
Sbjct: 242 WGKEEACRILVENLCD------MEAVNKVGQTAFDVADED 275

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 47.6 bits (112), Expect = 5e-07
 Identities = 18/167 (10%), Positives = 44/167 (26%), Gaps = 6/167 (3%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIFGEI--NRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
           K  + E    + +  G +  +     +  + E+   +   +      AA +G+  V+  L
Sbjct: 86  KGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRL 145

Query: 70  VSICPESLEKLTSN-GETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLH 128
             + P  +  +       A  LA +         L +       E     + +       
Sbjct: 146 CELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE---LAPTEATAMIQAENYYAFRW 202

Query: 129 LATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD 175
            A       ++  L+                 E      +    ++ 
Sbjct: 203 AAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRL 249

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 46.8 bits (110), Expect = 8e-07
 Identities = 21/173 (12%), Positives = 40/173 (23%), Gaps = 23/173 (13%)

Query: 10  SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRAL 69
           +I+N   +  + L+         + F   N    + +     I +          V + L
Sbjct: 6   NIENYENDPQLRLIPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 65

Query: 70  VS----------ICPESLEKLTSNGETALHLAVKKSRSDA---FEALVDEAKNHRKEHLF 116
                              K     E    +A     S A      L+   +  +     
Sbjct: 66  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV---- 121

Query: 117 TWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLC 169
                E      LA  N    ++  L            +  +  E     +L 
Sbjct: 122 --IQAENYQAFRLAAENGHLHVLNRLCELAPTE----IMAMIQAENYHAFRLA 168

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 12/109 (11%)

Query: 9   ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEV--------DNSSMIPLHRAALD 60
                ++          +   E    F   N +   ++            +  L R   +
Sbjct: 230 EFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDE 289

Query: 61  GNSDVIRALVSICPE----SLEKLTSNGETALHLAVKKSRSDAFEALVD 105
              D IR L+SI           +  +    L LA++     A   L+ 
Sbjct: 290 VLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 13/132 (9%), Positives = 24/132 (18%), Gaps = 13/132 (9%)

Query: 12  KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS 71
                          G+               +            +  DG  D++     
Sbjct: 219 CPVMLAYAEIHEFEYGEKYVNPFI-----ARHVNRLKEMHDAFKLSNPDGVFDLVTKSEC 273

Query: 72  ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT 131
                           L     +   D    L+                 + N +L LA 
Sbjct: 274 -------LQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPT-ATIPGDANELLRLAL 325

Query: 132 LNKLKQIVELLI 143
               +    LL+
Sbjct: 326 RLGNQGACALLL 337

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (105), Expect = 2e-06
 Identities = 13/66 (19%), Positives = 27/66 (40%)

Query: 53  PLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRK 112
           PLH+A ++     ++ L+   P  L +   +G   LH +V     +    L+ + +N   
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNL 62

Query: 113 EHLFTW 118
           +     
Sbjct: 63  DDYPDD 68

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (96), Expect = 3e-05
 Identities = 15/90 (16%), Positives = 34/90 (37%)

Query: 5   WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSD 64
                 IK++  +  +H  ++ G  + + +   + +      D     PL  A  +G+ D
Sbjct: 127 NGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGD 186

Query: 65  VIRALVSICPESLEKLTSNGETALHLAVKK 94
               LV       + + + G  A  +A+ +
Sbjct: 187 AAVLLVEKYGAEYDLVDNKGAKAEDVALNE 216

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 7e-05
 Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 83  NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLN 133
           +G+T LH+AV +    A   LV+  +   +E      +    T LHLA + 
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRE--LDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 9e-05
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 53 PLHRAALDGNSDVIRALVSICPES---LEKLTSNGETALHLAVKK 94
          PLH A + GN   +  LV++  +    L+   +  +T LHLAV  
Sbjct: 6  PLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVIT 50

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 3e-04
 Identities = 18/96 (18%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEI 181
           +G+T LH+A +      V  L+           ++  N   QT L L    +  S  + +
Sbjct: 2   DGDTPLHIAVVQGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLL 59

Query: 182 GWIIQRAIAQQSPQLPADGAANSSRNQTRWPMQTRN 217
                  +A       A   A   R+ T       +
Sbjct: 60  VTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDS 95

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 1e-04
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 51  MIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNH 110
              LH A++ G   ++  LVS+  +   +   NG TALHLAV     D    L+    + 
Sbjct: 112 HTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADV 171

Query: 111 RKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR 144
                      +G +   L       +I + L +
Sbjct: 172 ------NRVTYQGYSPYQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 5e-04
 Identities = 11/48 (22%), Positives = 21/48 (43%), Gaps = 2/48 (4%)

Query: 83  NGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLA 130
           +G++ LHLA+          ++ + K         +++    T LHLA
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLA 46

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 15/62 (24%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 122 EGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEI 181
           +G++ LHLA +++ K +   +IR+         +N  N   QT L L    +Q    + +
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAF--LNFQNNLQQTPLHLAVITNQPEIAEAL 58

Query: 182 GW 183
             
Sbjct: 59  LG 60

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.9 bits (84), Expect = 7e-04
 Identities = 24/139 (17%), Positives = 39/139 (28%), Gaps = 36/139 (25%)

Query: 47  DNSSMI-PLHRAALDGNSDVIRALVS-----ICPESLEKLTSNGETALHLAVKKSRSDAF 100
           D ++ +  L  A    +   +    +          L       ETALHLAV+     + 
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 101 E---------ALVDEAKNHRKEHLFTWK---------------------DKEGNTVLHLA 130
                       +D+        L                         ++ G T L +A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 131 TLNKLKQIVELLIRENSNR 149
              K +   ELL +  S R
Sbjct: 122 KRLKHEHCEELLTQALSGR 140

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (78), Expect = 0.003
 Identities = 7/36 (19%), Positives = 14/36 (38%)

Query: 108 KNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLI 143
                      ++ +G+T   LA L    ++V L+ 
Sbjct: 118 LVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQ 153

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	100.0
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.97
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.97
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.97
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.96
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.96
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.95
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.93
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.93
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.92
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.91
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.9
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.89
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.88
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.88
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.87
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-33  Score=219.66  Aligned_cols=171  Identities=22%  Similarity=0.243  Sum_probs=106.2

Q ss_pred             ccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC-----------
Q 025505            6 PQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICP-----------   74 (252)
Q Consensus         6 p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-----------   74 (252)
                      +..++.+|..|+||||+||..|+.+++++|++.|++++. .|..|.||||+|+..++.+++++|++...           
T Consensus        35 ~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~-~d~~g~tpL~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  113 (255)
T d1oy3d_          35 HEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLV-AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYL  113 (255)
T ss_dssp             SGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSC-CCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----
T ss_pred             cccccCcCCCCCCccchHHhhcccccccccccccccccc-cccccchhhhhhhccCchHHHHHHHhhccchhcccchhhh
Confidence            444555566666666666666666666666666666555 55566666666666666666655543211           


Q ss_pred             -----------------------------------ccccccCCCCchHHHHHHHcCChHHHHHHHHHHhccccccccccc
Q 025505           75 -----------------------------------ESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWK  119 (252)
Q Consensus        75 -----------------------------------~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~  119 (252)
                                                         ..++.++..|.||||+|+..++.+++++|++.+..     .....
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~-----~~~~~  188 (255)
T d1oy3d_         114 TQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD-----LNKPE  188 (255)
T ss_dssp             ------------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC-----TTCCC
T ss_pred             hHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCcccccccccccccccccchhccccc-----ccccc
Confidence                                               00122345566666666666666666666666652     22234


Q ss_pred             CCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhcccc
Q 025505          120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       120 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~  192 (252)
                      +..|.||||+|+..++.+++++|++      +|++++.+|..|+||||+|+.    .++.+++++|+++||+.
T Consensus       189 ~~~g~TpL~~A~~~~~~~~v~~Ll~------~gadin~~d~~g~t~L~~A~~----~~~~~i~~~Ll~~Ga~~  251 (255)
T d1oy3d_         189 PTCGRTPLHLAVEAQAASVLELLLK------AGADPTARMYGGRTPLGSALL----RPNPILARLLRAHGAPE  251 (255)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHT----SSCHHHHHHHHHTTCCC
T ss_pred             cccccccccccccccHHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHH----CCCHHHHHHHHHcCCCC
Confidence            5567777777777777777777774      667777777777777777777    66777777777777753

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4e-33  Score=213.00  Aligned_cols=175  Identities=23%  Similarity=0.259  Sum_probs=164.4

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      |...|..++.+|..|+||||+||..|+.+++++++..+..... .+..+.++++.++..++.+++++|++++ .+++.+|
T Consensus        23 l~~~~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~Ll~~~-~d~~~~d  100 (223)
T d1uoha_          23 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND-KDDAGWSPLHIAASAGRDEIVKALLGKG-AQVNAVN  100 (223)
T ss_dssp             HHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHhCCCcCcCcCCCCCCHHHHHHHhhhhccccccccccccccc-ccccccccccccccccccchhHHHhccC-ceeEeeC
Confidence            4567889999999999999999999999999999999988876 7788899999999999999999999999 6889999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCC
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKE  161 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~  161 (252)
                      ..|.||||+|+..++.+++++|++++.      +++..+..|.||||+|+..++.+++++|++      .+.+++.+|..
T Consensus       101 ~~g~tpL~~A~~~~~~e~~~~Ll~~g~------d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~------~~~~i~~~d~~  168 (223)
T d1uoha_         101 QNGCTPLHYAASKNRHEIAVMLLEGGA------NPDAKDHYEATAMHRAAAKGNLKMIHILLY------YKASTNIQDTE  168 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTT
T ss_pred             CCCCchhhHHHHcCCHHHHHHHHHCCC------CCCCcCCCCCccchhhhhcCCcchhhhhcc------ccceeeeccCC
Confidence            999999999999999999999999998      788999999999999999999999999995      88899999999


Q ss_pred             CCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          162 GQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       162 g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      |+||||+|+.    .++.+++++|+++|++++.
T Consensus       169 g~TpL~~Aa~----~g~~~~v~~LL~~Gad~~~  197 (223)
T d1uoha_         169 GNTPLHLACD----EERVEEAKLLVSQGASIYI  197 (223)
T ss_dssp             CCCHHHHHHH----TTCHHHHHHHHHTTCCSCC
T ss_pred             CCceeccccc----cCcHHHHHHHHHCCCCCCC
Confidence            9999999998    8899999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.5e-32  Score=213.64  Aligned_cols=174  Identities=20%  Similarity=0.228  Sum_probs=151.0

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHHHhhcCccccc--cccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRIFGEINRELCL--EVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      ...+++|+||||+||..|+.+++++|++.|++...  .++..|.||||+|+..|+.+++++|++++ ++++.+|.+|.||
T Consensus         3 ~~i~~~G~t~Lh~A~~~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~g-a~i~~~d~~g~tp   81 (255)
T d1oy3d_           3 GYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAG-AGVLVAERGGHTA   81 (255)
T ss_dssp             CCCCTTCCCHHHHHHHTTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSSCCCTTSCCH
T ss_pred             ccCCcCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhhccccccccccccc-ccccccccccchh
Confidence            45789999999999999999999999999877432  27789999999999999999999999999 7899999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhccc-----------------------------------------ccccccccCCCCCcH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHR-----------------------------------------KEHLFTWKDKEGNTV  126 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~-----------------------------------------~~~~~~~~~~~g~t~  126 (252)
                      ||+|+..++.+++++|++......                                         ....++.++..|.||
T Consensus        82 L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~d~~g~Tp  161 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTP  161 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGGGGTTCCCTTSCCH
T ss_pred             hhhhhccCchHHHHHHHhhccchhcccchhhhhHHhhhcccchHHHHHHHhhcchhHHHHHHhhhcCcccccccccCccc
Confidence            999999999999999876432211                                         122566788999999


Q ss_pred             HHHHHhCChHHHHHHHHhcccccceeeeeec-ccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          127 LHLATLNKLKQIVELLIRENSNRRIMIRINT-VNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ||+|+..++.+++++|++      .+.+.+. .+..|.||||+|+.    .++.+++++|+++|++++.
T Consensus       162 Lh~A~~~~~~~~v~~Ll~------~~~~~~~~~~~~g~TpL~~A~~----~~~~~~v~~Ll~~gadin~  220 (255)
T d1oy3d_         162 LHVAVIHKDAEMVRLLRD------AGADLNKPEPTCGRTPLHLAVE----AQAASVLELLLKAGADPTA  220 (255)
T ss_dssp             HHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccccccccccchhc------cccccccccccccccccccccc----ccHHHHHHHHHHCCCCCCC
Confidence            999999999999999997      6666654 46789999999998    8899999999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.2e-32  Score=206.10  Aligned_cols=177  Identities=25%  Similarity=0.234  Sum_probs=102.9

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccc--cccCCCCcHHHHHHHcCCHHHHHHHHHhCC-cccc
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCL--EVDNSSMIPLHRAALDGNSDVIRALVSICP-ESLE   78 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~--~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-~~~~   78 (252)
                      |+..|..++.+|.+|+||||+|+..|+.+++++|+++|++++.  ..+..|.+|+|+++..+..++++.++..+. ....
T Consensus        20 l~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (229)
T d1ixva_          20 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLN   99 (229)
T ss_dssp             HHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHSSSSCCCTT
T ss_pred             HHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccccccccccccccccccccccc
Confidence            4567889999999999999999999999999999999987653  245566677777666666666655554432 1222


Q ss_pred             ccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecc
Q 025505           79 KLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV  158 (252)
Q Consensus        79 ~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  158 (252)
                      ..+..+.|+++.++..++.+++++|+..+.      ..+..+..|+||||+|+..++.+++++|++     ..+.+++.+
T Consensus       100 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~------~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~-----~~~~~in~~  168 (229)
T d1ixva_         100 KITNQGVTCLHLAVGKKWFEVSQFLIENGA------SVRIKDKFNQIPLHRAASVGSLKLIELLCG-----LGKSAVNWQ  168 (229)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHHTCHHHHHHHHT-----TTCCCSCCC
T ss_pred             ccccccccccccccccchhhhhhhhhhhcc------cccccCCCCCCccchhhhcccccccccccc-----ccccccccc
Confidence            333444444444444444444444444444      334444444444444444444444444443     122334444


Q ss_pred             cCCCCCHhHhhhhcCCCchhHHHHHHHHH-hccccC
Q 025505          159 NKEGQTTLQLCNANSQDSAFKEIGWIIQR-AIAQQS  193 (252)
Q Consensus       159 ~~~g~t~l~~a~~~~~~~~~~~~~~~L~~-~ga~~~  193 (252)
                      |..|+||||+|+.    .++.+++++|++ .|++++
T Consensus       169 d~~g~TpLh~A~~----~~~~~~v~~Ll~~~gad~~  200 (229)
T d1ixva_         169 DKQGWTPLFHALA----EGHGDAAVLLVEKYGAEYD  200 (229)
T ss_dssp             CTTSCCHHHHHHH----TTCHHHHHHHHHHHCCCSC
T ss_pred             ccccCCchhhhcc----cccHHHHHHHHHhcCCCCC
Confidence            4444444444444    444444444443 344444

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.7e-30  Score=197.91  Aligned_cols=177  Identities=24%  Similarity=0.238  Sum_probs=156.4

Q ss_pred             CccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCC-----ccccc
Q 025505            5 WPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICP-----ESLEK   79 (252)
Q Consensus         5 ~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~-----~~~~~   79 (252)
                      .+..++.+|..|+||||+||..|+.+++++|++.|++++. .+..|.||||+|+..++.++++.|++.+.     .....
T Consensus        28 ~~~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~-~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  106 (221)
T d1iknd_          28 DLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPEL-RDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKA  106 (221)
T ss_dssp             -CCCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCC-CCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGC
T ss_pred             CCCCcccCCCCCCccccccccccccccccccccccccccc-cccccccccccccccccccccchhhhhcccccccccccc
Confidence            4556889999999999999999999999999999999987 89999999999999999999999998752     23344


Q ss_pred             cCCCCchHHHHHHHcCChHHHHHHHHHHhccccccccccc-CCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecc
Q 025505           80 LTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWK-DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTV  158 (252)
Q Consensus        80 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~-~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~  158 (252)
                      ....|.||||.|+..++.+++++|+..+.      .++.. +..|+||||+|++.|+.+++++|++      .|+|++.+
T Consensus       107 ~~~~~~t~l~~a~~~~~~~~~~~l~~~~~------~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~------~gad~~~~  174 (221)
T d1iknd_         107 TNYNGHTCLHLASIHGYLGIVELLVSLGA------DVNAQEPCNGRTALHLAVDLQNPDLVSLLLK------CGADVNRV  174 (221)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHHHTC------CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHT------TTCCSCCC
T ss_pred             cccccchhhhHHhhcCChhheeeecccCc------ccccccccCCCCccccccccccHHHHHHHHh------cCCccccc
Confidence            55678999999999999999999999988      45554 4679999999999999999999996      89999999


Q ss_pred             cCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCCCCC
Q 025505          159 NKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQLPA  198 (252)
Q Consensus       159 ~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~~~~  198 (252)
                      |.+|+||||+|+.    .++.+++++|.+.+.+.....+.
T Consensus       175 ~~~G~tpl~~A~~----~~~~~~~~~l~~~~~~~~~~~~~  210 (221)
T d1iknd_         175 TYQGYSPYQLTWG----RPSTRIQQQLGQLTLENLQMLPE  210 (221)
T ss_dssp             CTTCCCGGGGCTT----SSCHHHHHHHHTTSCGGGSSCCC
T ss_pred             CCCCCCHHHHHHH----CCCHHHHHHHHHcCCcccccccC
Confidence            9999999999998    88999999999998876554443

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.4e-31  Score=188.88  Aligned_cols=154  Identities=20%  Similarity=0.237  Sum_probs=144.5

Q ss_pred             hHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCCh
Q 025505           18 TTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~   97 (252)
                      +|||+||..|+.++|+.|+++|++++. .|..|.||||+|+ .|+.+++++|++++ .+++.++..+.++++.++..+..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g~d~n~-~d~~g~TpL~~A~-~~~~ei~~~Ll~~~-a~~~~~~~~~~~~l~~~~~~~~~   79 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNNVNVNA-QNGFGRTALQVMK-LGNPEIARRLLLRG-ANPDLKDRTGFAVIHDAARAGFL   79 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSCCCTTC-CCTTSCCHHHHCC-SSCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCCcCc-cCCcccccccccc-cccccccccccccc-cccccccccCccccccccccccc
Confidence            899999999999999999999999987 8999999999886 79999999999999 67899999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCch
Q 025505           98 DAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSA  177 (252)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~  177 (252)
                      .+++.|+..+.      .++..+..|.+|+|+|+..++.+++++|++     ..+.+++.+|..|.||||+|+.    .+
T Consensus        80 ~~~~~l~~~~~------~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~-----~~~~~~~~~d~~g~TpL~~A~~----~~  144 (156)
T d1ihba_          80 DTLQTLLEFQA------DVNIEDNEGNLPLHLAAKEGHLRVVEFLVK-----HTASNVGHRNHKGDTACDLARL----YG  144 (156)
T ss_dssp             HHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH-----HSCCCTTCCCTTSCCHHHHHHH----TT
T ss_pred             ccccccccccc------cccccccccccccccccccccccccccccc-----cccccccccCCCCCCHHHHHHH----cC
Confidence            99999999888      788899999999999999999999999997     3445789999999999999999    88


Q ss_pred             hHHHHHHHHHhc
Q 025505          178 FKEIGWIIQRAI  189 (252)
Q Consensus       178 ~~~~~~~L~~~g  189 (252)
                      +.+++++|+++|
T Consensus       145 ~~~iv~~Ll~~G  156 (156)
T d1ihba_         145 RNEVVSLMQANG  156 (156)
T ss_dssp             CHHHHHHHHHTC
T ss_pred             CHHHHHHHHhcC
Confidence            999999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.97  E-value=1.9e-31  Score=209.50  Aligned_cols=175  Identities=17%  Similarity=0.175  Sum_probs=124.1

Q ss_pred             ccccc-CCCChHHHHHHhCCCHHHHHHH--------hhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccc
Q 025505            9 ASIKN-QRGETTMHLLSTDGDAETVRIF--------GEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEK   79 (252)
Q Consensus         9 ~~~~d-~~g~t~L~~A~~~g~~~~v~~L--------l~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~   79 (252)
                      ++..| ++|+||||+||..|+.++|+.|        ++.|++++. +|..|.||||+|+..|+.+++++|+++| ++++.
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~-~d~~G~TpLh~A~~~g~~~iv~~Ll~~G-ad~n~  102 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNA-MDCDENTPLMLAVLARRRRLVAYLMKAG-ADPTI  102 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCSCC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccc-cCCCCCeeeccccccccccccccccccc-ccccc
Confidence            44444 5699999999999999988776        566889987 8999999999999999999999999999 77899


Q ss_pred             cCCCCchHHHHHHHcCChHHHHHHHHHHhccc-----------------------------------------ccccccc
Q 025505           80 LTSNGETALHLAVKKSRSDAFEALVDEAKNHR-----------------------------------------KEHLFTW  118 (252)
Q Consensus        80 ~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~-----------------------------------------~~~~~~~  118 (252)
                      ++.+|.|||++|+..++.+++.++........                                         .....+.
T Consensus       103 ~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (277)
T d2fo1e1         103 YNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDS  182 (277)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSS
T ss_pred             ccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhcccccccccccccccccccccccccccccc
Confidence            99999999999999999988887765432110                                         0012223


Q ss_pred             cCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          119 KDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       119 ~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .+..|+||||+++..++.+++++++.     ..+.+++.+|..|.||||+|+.    .++.+++++|+++|++++.
T Consensus       183 ~~~~g~t~L~~~~~~~~~~~~~~~l~-----~~~~~~~~~d~~g~tpL~~A~~----~g~~~iv~~Ll~~gadin~  249 (277)
T d2fo1e1         183 EKYKGRTALHYAAQVSNMPIVKYLVG-----EKGSNKDKQDEDGKTPIMLAAQ----EGRIEVVMYLIQQGASVEA  249 (277)
T ss_dssp             SSCCCCCTHHHHHSSCCHHHHHHHHH-----HSCCCTTCCCTTCCCHHHHHHH----HTCHHHHHHHHHTTCCSSC
T ss_pred             cccCCCCccccccccccccccccccc-----cccccccccCCCCCCHHHHHHH----cCCHHHHHHHHHCcCCCCC
Confidence            34445555555555555555555443     3455555555555566655555    5555555555555555543

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=2.1e-30  Score=197.74  Aligned_cols=161  Identities=24%  Similarity=0.237  Sum_probs=150.5

Q ss_pred             ccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchH
Q 025505            8 LASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETA   87 (252)
Q Consensus         8 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~   87 (252)
                      .....+..+.+++++++..|+.+++++|++++.+++. .|..|.||||+|+..|+.+++++|++++ .+++.++..|.||
T Consensus        62 ~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~-~d~~g~tpL~~A~~~~~~e~~~~Ll~~g-~d~~~~~~~~~t~  139 (223)
T d1uoha_          62 PVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNA-VNQNGCTPLHYAASKNRHEIAVMLLEGG-ANPDAKDHYEATA  139 (223)
T ss_dssp             CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCCTTSCCH
T ss_pred             ccccccccccccccccccccccchhHHHhccCceeEe-eCCCCCchhhHHHHcCCHHHHHHHHHCC-CCCCCcCCCCCcc
Confidence            3445667889999999999999999999999999987 8999999999999999999999999999 6889999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhH
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQ  167 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~  167 (252)
                      ||+|+..++.+++++|++.+.      +++..|..|+||||+|+..|+.++|++|++      .|++++.+|..|+||||
T Consensus       140 L~~a~~~~~~~~~~~L~~~~~------~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~------~Gad~~~~d~~g~tpl~  207 (223)
T d1uoha_         140 MHRAAAKGNLKMIHILLYYKA------STNIQDTEGNTPLHLACDEERVEEAKLLVS------QGASIYIENKEEKTPLQ  207 (223)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTC------CSCCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCHHH
T ss_pred             chhhhhcCCcchhhhhccccc------eeeeccCCCCceeccccccCcHHHHHHHHH------CCCCCCCCCCCCCCHHH
Confidence            999999999999999999888      899999999999999999999999999996      89999999999999999


Q ss_pred             hhhhcCCCchhHHHHHHHHH
Q 025505          168 LCNANSQDSAFKEIGWIIQR  187 (252)
Q Consensus       168 ~a~~~~~~~~~~~~~~~L~~  187 (252)
                      +|.     .++.+++++|++
T Consensus       208 ~A~-----~~~~~i~~~Ll~  222 (223)
T d1uoha_         208 VAK-----GGLGLILKRMVE  222 (223)
T ss_dssp             HCC-----TTHHHHHHHHHC
T ss_pred             HHH-----CCCHHHHhcccC
Confidence            985     778889999885

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=1.5e-29  Score=181.65  Aligned_cols=151  Identities=24%  Similarity=0.252  Sum_probs=139.8

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcC
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKS   95 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~   95 (252)
                      ..||||.||+.|+.++|+.|+++|++.+  .+..|+||||+|+..++.++++.++... ......+..+.++++.++...
T Consensus         2 ~~t~L~~Aa~~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~   78 (153)
T d1awcb_           2 LGKKLLEAARAGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQYGHFSTTEVLLRAG-VSRDARTKVDRTPLHMAASEG   78 (153)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTCCCHHHHHHHHT
T ss_pred             CCHHHHHHHHCCCHHHHHHHHHcCCCcc--cccCCCcccccccccccccccccccccc-ccccccccccccccccccccc
Confidence            3499999999999999999999999875  6899999999999999999999999887 445667788889999999999


Q ss_pred             ChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCC
Q 025505           96 RSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQD  175 (252)
Q Consensus        96 ~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~  175 (252)
                      +.+++++++..+.      +.+.++..|+||||+|+..|+.+++++|++      .|++++.+|..|.||||+|+.    
T Consensus        79 ~~~~~~~l~~~~~------~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~------~gad~~~~d~~g~Tpl~~A~~----  142 (153)
T d1awcb_          79 HANIVEVLLKHGA------DVNAKDMLKMTALHWATEHNHQEVVELLIK------YGADVHTQSKFCKTAFDISID----  142 (153)
T ss_dssp             CHHHHHHHHTTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----
T ss_pred             cceeeecccccCC------ccccccccCchHHHhhhhcchhheeeeccc------cccCCcccCCCCCCHHHHHHH----
Confidence            9999999999888      788899999999999999999999999996      899999999999999999999    


Q ss_pred             chhHHHHHHH
Q 025505          176 SAFKEIGWII  185 (252)
Q Consensus       176 ~~~~~~~~~L  185 (252)
                      .++.|++++|
T Consensus       143 ~g~~eiv~lL  152 (153)
T d1awcb_         143 NGNEDLAEIL  152 (153)
T ss_dssp             TTCHHHHHHH
T ss_pred             cCCHHHHHhC
Confidence            8899999977

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=4.7e-29  Score=197.29  Aligned_cols=170  Identities=21%  Similarity=0.254  Sum_probs=151.2

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHH
Q 025505           14 QRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVK   93 (252)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~   93 (252)
                      ..+.|+|+.||..|+.++|++|+++|++++. .|..|.||||+|+..|+.+++++|++++ ......+..+.+||+.++.
T Consensus        38 ~~~~t~l~~A~~~G~~~~v~~Ll~~Gadvn~-~d~~G~T~L~~A~~~g~~eiv~~Ll~~~-~~~~~~~~~~~~~L~~a~~  115 (291)
T d1s70b_          38 FDDGAVFLAACSSGDTEEVLRLLERGADINY-ANVDGLTALHQACIDDNVDMVKFLVENG-ANINQPDNEGWIPLHAAAS  115 (291)
T ss_dssp             ECHHHHHHHHHHHTCHHHHHHHHHHCCCTTC-BCTTCCBHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHH
T ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCc-cCCCCCcHHHHHHhcCCceeeeeecccc-ccccccccccccccccccc
Confidence            3467999999999999999999999999987 8999999999999999999999999998 5677888899999999999


Q ss_pred             cCChHHHHHHHHHHhccc------------------------------------------------------cccccccc
Q 025505           94 KSRSDAFEALVDEAKNHR------------------------------------------------------KEHLFTWK  119 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~------------------------------------------------------~~~~~~~~  119 (252)
                      .++.++++.|++.+....                                                      ........
T Consensus       116 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (291)
T d1s70b_         116 CGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRH  195 (291)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             ccccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccc
Confidence            999999999998765332                                                      01123446


Q ss_pred             CCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          120 DKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       120 ~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      +..|.||||+|+..|+.+++++|++      .|++++.++..|.||||+|+.    .++.+++++|+++|++++..
T Consensus       196 ~~~g~t~L~~a~~~~~~~~~~~Ll~------~g~din~~~~~g~TpL~~A~~----~g~~~iv~lLl~~Gadv~~~  261 (291)
T d1s70b_         196 AKSGGTALHVAAAKGYTEVLKLLIQ------ARYDVNIKDYDGWTPLHAAAH----WGKEEACRILVENLCDMEAV  261 (291)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHT------TTCCTTCCCTTCCCHHHHHHH----TTCHHHHHHHHHTTCCTTCC
T ss_pred             cCCCCChhhHHHHcCChhhhccccc------ceecccccccCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCCc
Confidence            6789999999999999999999996      889999999999999999999    88999999999999998753

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.4e-29  Score=181.26  Aligned_cols=151  Identities=18%  Similarity=0.184  Sum_probs=138.9

Q ss_pred             hHHHHHHhCCCHHHHHHHhhc-CccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCC
Q 025505           18 TTMHLLSTDGDAETVRIFGEI-NRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSR   96 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~-~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~   96 (252)
                      +.|+.||..|+.++|+.|++. +.+++. .|..|.||||+|+ .|+.+++++|++++ .+++..+..|.+|++.++..++
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~~~~~n~-~d~~g~t~L~~A~-~~~~~~v~~Ll~~~-~~~~~~~~~~~~~l~~~~~~~~   80 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRELVHPDA-LNRFGKTALQVMM-FGSTAIALELLKQG-ASPNVQDTSGTSPVHDAARTGF   80 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTTCCCTTC-CCTTSCCHHHHSC-TTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCCCCCc-cCCCCCccccccc-cccccccccccccc-cccccccccccccccccccccc
Confidence            459999999999999999986 567766 8999999999987 48999999999998 6788899999999999999999


Q ss_pred             hHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCc
Q 025505           97 SDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDS  176 (252)
Q Consensus        97 ~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~  176 (252)
                      .++++++++.+.      +++.+|..|+||||+|+..|+.+++++|+       .+++++.+|..|+||||+|+.    .
T Consensus        81 ~~~~~~~l~~~~------~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-------~~~~~~~~d~~G~TpL~~A~~----~  143 (156)
T d1bd8a_          81 LDTLKVLVEHGA------DVNVPDGTGALPIHLAVQEGHTAVVSFLA-------AESDLHRRDARGLTPLELALQ----R  143 (156)
T ss_dssp             HHHHHHHHHTTC------CSCCCCTTSCCHHHHHHHHTCHHHHHHHH-------TTSCTTCCCTTSCCHHHHHHH----S
T ss_pred             cccccccccccc------ccccccCCCCeeecccccccccccccccc-------ccccccccCCCCCCHHHHHHH----c
Confidence            999999999998      78899999999999999999999999888       567899999999999999999    8


Q ss_pred             hhHHHHHHHHHh
Q 025505          177 AFKEIGWIIQRA  188 (252)
Q Consensus       177 ~~~~~~~~L~~~  188 (252)
                      ++.+++++|+++
T Consensus       144 g~~~iv~~Ll~h  155 (156)
T d1bd8a_         144 GAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTT
T ss_pred             CCHHHHHHHHhh
Confidence            899999999875

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.96  E-value=2.5e-29  Score=189.53  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=142.5

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCH------------------
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS------------------   63 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~------------------   63 (252)
                      |++.+++....|++|.||||+||..|+.+++++|++.|++++. .+..+.++++.++..++.                  
T Consensus         9 l~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g~~~n~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (209)
T d1ot8a_           9 LAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAGADANS-QDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARM   87 (209)
T ss_dssp             HHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCC
T ss_pred             HHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhcccccc-cccccccccccccccccccccccccccccccccccc
Confidence            3444553334689999999999999999999999999999887 777788888887775554                  


Q ss_pred             ----------------HHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHH
Q 025505           64 ----------------DVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVL  127 (252)
Q Consensus        64 ----------------~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~L  127 (252)
                                      ...+.|...+ .+++.++..|.|||++++..+...+++.++..+.      +++..|..|.|||
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~L~~~~-~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~------~~~~~d~~g~TpL  160 (209)
T d1ot8a_          88 HDGTTPLILAARLAIEGMVEDLITAD-ADINAADNSGKTALHWAAAVNNTEAVNILLMHHA------NRDAQDDKDETPL  160 (209)
T ss_dssp             TTCCCHHHHHHHTTCTTHHHHHHHTT-CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTC------CTTCCCTTCCCHH
T ss_pred             ccccccccccccccchhhhhhhhhhc-ccccccCCCCCCcchhhcccCcceeeeeeccccc------ccccccccccccc
Confidence                            3444444554 4567788999999999999999999999999988      7889999999999


Q ss_pred             HHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHH
Q 025505          128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWII  185 (252)
Q Consensus       128 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L  185 (252)
                      |+|+..|+.+++++|++      .|++++.+|..|+||||+|+.    .++.+++++|
T Consensus       161 ~~A~~~g~~~~v~~Ll~------~gad~n~~d~~g~Tpl~~A~~----~~~~~iv~lL  208 (209)
T d1ot8a_         161 FLAAREGSYEASKALLD------NFANREITDHMDRLPRDVASE----RLHHDIVRLL  208 (209)
T ss_dssp             HHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHH
T ss_pred             chhccccHHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH----cCCHHHHhhc
Confidence            99999999999999996      889999999999999999999    8899999986

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.3e-28  Score=185.07  Aligned_cols=158  Identities=26%  Similarity=0.303  Sum_probs=127.0

Q ss_pred             CCCChHHHHHHhCCCHHHHHHHhh----cCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHH
Q 025505           14 QRGETTMHLLSTDGDAETVRIFGE----INRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALH   89 (252)
Q Consensus        14 ~~g~t~L~~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   89 (252)
                      ++|+||||+||..|+.++++.|++    .|.+++. .|..|+||||+|+..|+.+++++|++++ ...+..+..+.++++
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~-~d~~g~TpL~~A~~~~~~~iv~~Ll~~g-a~~~~~~~~~~~~~~   78 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDI-YNNLRQTPLHLAVITTLPSVVRLLVTAG-ASPMALDRHGQTAAH   78 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCc-cCCCCCccceehhccccccccccccccc-ccccccccccccccc
Confidence            469999999999999999998875    7788887 8899999999999999999999999987 455555555556666


Q ss_pred             HHHHcCChHHHHHHHHHHhccc----------------------------------------------------------
Q 025505           90 LAVKKSRSDAFEALVDEAKNHR----------------------------------------------------------  111 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~----------------------------------------------------------  111 (252)
                      .|....+.++++.+........                                                          
T Consensus        79 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~  158 (228)
T d1k1aa_          79 LACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLS  158 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH
T ss_pred             cccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhh
Confidence            6555555555554443321110                                                          


Q ss_pred             -------ccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHH
Q 025505          112 -------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGW  183 (252)
Q Consensus       112 -------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~  183 (252)
                             .....+.+|..|.||||+|+..|+.+++++|++      .|++++.+|.+|+||||+|++    .++.++++
T Consensus       159 ~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~------~Gad~n~~d~~G~TpL~~A~~----~~~~divk  227 (228)
T d1k1aa_         159 MVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVR------SGADSSLKNCHNDTPLMVARS----RRVIDILR  227 (228)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHH------TTCCTTCCCTTSCCTTTTCSS----HHHHHHHT
T ss_pred             hhhhhhhhccccccccccCcchHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHHHh----CCCccccC
Confidence                   112677788999999999999999999999996      899999999999999999998    88888874

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.7e-28  Score=191.32  Aligned_cols=170  Identities=22%  Similarity=0.282  Sum_probs=130.2

Q ss_pred             CChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc-------------------
Q 025505           16 GETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPES-------------------   76 (252)
Q Consensus        16 g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~-------------------   76 (252)
                      +.|+||+|+..|+.++|++|+++|++++...+..|.||||+|+..|+.+++++|++.+...                   
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGS   84 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhcCC
Confidence            4577777777777777777777777776644556777777777777777777776643210                   


Q ss_pred             --------------------------------------------------------ccccCCCCchHHHHHHHcCChHHH
Q 025505           77 --------------------------------------------------------LEKLTSNGETALHLAVKKSRSDAF  100 (252)
Q Consensus        77 --------------------------------------------------------~~~~~~~g~t~L~~a~~~~~~~~~  100 (252)
                                                                              ....+..|.||||+|++.++.+++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~  164 (285)
T d1wdya_          85 VKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVL  164 (285)
T ss_dssp             HHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHH
T ss_pred             ccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHHHH
Confidence                                                                    001123588888888888888888


Q ss_pred             HHHHHHH-hccc-------------------------------ccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccc
Q 025505          101 EALVDEA-KNHR-------------------------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN  148 (252)
Q Consensus       101 ~~Ll~~~-~~~~-------------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~  148 (252)
                      ++|++.. .+..                               ...+++..+..|.||||+|+..++.+++++|++    
T Consensus       165 ~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~----  240 (285)
T d1wdya_         165 KILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLE----  240 (285)
T ss_dssp             HHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHH----
T ss_pred             HHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHH----
Confidence            8888642 2111                               112567788899999999999999999999997    


Q ss_pred             cceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          149 RRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       149 ~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                       ..|++++.+|.+|.||||+|++    .++.+++++|+++||+++.
T Consensus       241 -~~g~din~~d~~G~TpL~~A~~----~~~~eiv~~Ll~~GAd~n~  281 (285)
T d1wdya_         241 -QEHIEINDTDSDGKTALLLAVE----LKLKKIAELLCKRGASTDC  281 (285)
T ss_dssp             -SSSCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHSSCSCC
T ss_pred             -cCCCCCcCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCc
Confidence             5799999999999999999999    8899999999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=8.9e-28  Score=183.43  Aligned_cols=161  Identities=18%  Similarity=0.170  Sum_probs=140.0

Q ss_pred             ChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccc---cccCCCCchHHHHHHH
Q 025505           17 ETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESL---EKLTSNGETALHLAVK   93 (252)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~---~~~~~~g~t~L~~a~~   93 (252)
                      +||||+||..|+.++|+.|++..+.....+|.+|+||||+|+..|+.+++++|++++. ++   ...+..|.+|+|+++.
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga-~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME-NVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCT-TCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHcCCccccchhhhhhc-ccccccccccccccccccccc
Confidence            5899999999999999999987654444489999999999999999999999999983 43   4567789999999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcC
Q 025505           94 KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANS  173 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~  173 (252)
                      .+..++++.++..+...    .....+..+.|+++.++..++.++++.|+.      .+.+.+.+|..|+||||+|+.  
T Consensus        80 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~------~~~~~~~~~~~g~t~l~~a~~--  147 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKP----DLNKITNQGVTCLHLAVGKKWFEVSQFLIE------NGASVRIKDKFNQIPLHRAAS--  147 (229)
T ss_dssp             HTCHHHHHHHHSSSSCC----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCTTSCCHHHHHHH--
T ss_pred             ccccccccccccccccc----cccccccccccccccccccchhhhhhhhhh------hcccccccCCCCCCccchhhh--
Confidence            99999999888876632    345567788999999999999999999996      778888899999999999999  


Q ss_pred             CCchhHHHHHHHHHhcccc
Q 025505          174 QDSAFKEIGWIIQRAIAQQ  192 (252)
Q Consensus       174 ~~~~~~~~~~~L~~~ga~~  192 (252)
                        .++.+++++|++.|...
T Consensus       148 --~~~~~~~~~Ll~~~~~~  164 (229)
T d1ixva_         148 --VGSLKLIELLCGLGKSA  164 (229)
T ss_dssp             --HTCHHHHHHHHTTTCCC
T ss_pred             --ccccccccccccccccc
Confidence              88899999999988543

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1e-28  Score=187.92  Aligned_cols=168  Identities=22%  Similarity=0.284  Sum_probs=143.7

Q ss_pred             CCChHHHHHHhCCCHHH----HHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHH
Q 025505           15 RGETTMHLLSTDGDAET----VRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHL   90 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~----v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~   90 (252)
                      +|+||||+|+..|+.++    ++.+...+.+++. .|..|+||||+|+..|+.+++++|++++ .+++..+..|.|||++
T Consensus         1 dG~t~Lh~A~~~g~~~~~~~li~~~~~~~~~in~-~d~~g~TpLh~A~~~~~~~iv~~L~~~g-~d~~~~d~~g~t~l~~   78 (221)
T d1iknd_           1 DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNF-QNNLQQTPLHLAVITNQPEIAEALLGAG-CDPELRDFRGNTPLHL   78 (221)
T ss_dssp             CCCCTTHHHHHTTCSSSSSCCCC-----CCCCCC-CCTTCCCHHHHHHHTTCHHHHHCCCSCC-CCSCCCCTTCCCHHHH
T ss_pred             CCChHHHHHHHcCCHHHHHHHHHHHHhCCCCccc-CCCCCCcccccccccccccccccccccc-cccccccccccccccc
Confidence            59999999999999654    4555567888887 8999999999999999999999999999 6889999999999999


Q ss_pred             HHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeeccc-CCCCCHhHhh
Q 025505           91 AVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVN-KEGQTTLQLC  169 (252)
Q Consensus        91 a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~-~~g~t~l~~a  169 (252)
                      ++..+..++++.|+..+...............|.||||.|+..++.+++++|+.      .+..++..+ ..|.||||+|
T Consensus        79 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~------~~~~~~~~~~~~G~T~L~~A  152 (221)
T d1iknd_          79 ACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVS------LGADVNAQEPCNGRTALHLA  152 (221)
T ss_dssp             HHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHH------HTCCTTCCCTTTCCCHHHHH
T ss_pred             ccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecc------cCcccccccccCCCCccccc
Confidence            999999999999999876444444555667778999999999999999999996      677776655 5799999999


Q ss_pred             hhcCCCchhHHHHHHHHHhccccCC
Q 025505          170 NANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       170 ~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +.    .++.+++++|+++|++++.
T Consensus       153 ~~----~g~~~~v~~Ll~~gad~~~  173 (221)
T d1iknd_         153 VD----LQNPDLVSLLLKCGADVNR  173 (221)
T ss_dssp             HH----TTCHHHHHHHHTTTCCSCC
T ss_pred             cc----cccHHHHHHHHhcCCcccc
Confidence            99    8899999999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.95  E-value=7.3e-28  Score=190.38  Aligned_cols=163  Identities=26%  Similarity=0.331  Sum_probs=143.5

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCcc------------
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPES------------   76 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~------------   76 (252)
                      ++..|.+|.||||+|+..|+.++|++|++++.+... .+..+.+||++|+..++.++++.|++++...            
T Consensus        66 vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~-~~~~~~~~L~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  144 (291)
T d1s70b_          66 INYANVDGLTALHQACIDDNVDMVKFLVENGANINQ-PDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD  144 (291)
T ss_dssp             TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCccCCCCCcHHHHHHhcCCceeeeeeccccccccc-ccccccccccccccccccchhhcccccCcccccccccCccccc
Confidence            688999999999999999999999999999998876 7888999999999999999999998765210            


Q ss_pred             -----------------------------------------------ccccCCCCchHHHHHHHcCChHHHHHHHHHHhc
Q 025505           77 -----------------------------------------------LEKLTSNGETALHLAVKKSRSDAFEALVDEAKN  109 (252)
Q Consensus        77 -----------------------------------------------~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~  109 (252)
                                                                     ....+..|.||||+|+..++.+++++|++.++ 
T Consensus       145 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~-  223 (291)
T d1s70b_         145 IAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARY-  223 (291)
T ss_dssp             HCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTTC-
T ss_pred             cccccccchhccccccccccccccccccccccccccchhhhcccccccccccCCCCChhhHHHHcCChhhhccccccee-
Confidence                                                           11234678899999999999999999999998 


Q ss_pred             ccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhc
Q 025505          110 HRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAI  189 (252)
Q Consensus       110 ~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~g  189 (252)
                           +++.++..|+||||+|+..|+.++|++|++      +|++++.+|..|+||||+|++        +++++|.+..
T Consensus       224 -----din~~~~~g~TpL~~A~~~g~~~iv~lLl~------~Gadv~~~d~~G~TaL~~A~e--------~~~~~L~~~~  284 (291)
T d1s70b_         224 -----DVNIKDYDGWTPLHAAAHWGKEEACRILVE------NLCDMEAVNKVGQTAFDVADE--------DILGYLEELQ  284 (291)
T ss_dssp             -----CTTCCCTTCCCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCTTTSCCS--------GGGHHHHHHH
T ss_pred             -----cccccccCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCcCCCCCCHHHHHHH--------HHHHHHHHHh
Confidence                 789999999999999999999999999996      899999999999999999984        4677776665


Q ss_pred             ccc
Q 025505          190 AQQ  192 (252)
Q Consensus       190 a~~  192 (252)
                      ...
T Consensus       285 ~~~  287 (291)
T d1s70b_         285 KKQ  287 (291)
T ss_dssp             HHT
T ss_pred             hhc
Confidence            544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=8.1e-28  Score=191.31  Aligned_cols=151  Identities=22%  Similarity=0.197  Sum_probs=119.6

Q ss_pred             cCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCH---HHHHHHHHhCCccccccCCCCchHHH
Q 025505           13 NQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNS---DVIRALVSICPESLEKLTSNGETALH   89 (252)
Q Consensus        13 d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~---~~v~~Ll~~~~~~~~~~~~~g~t~L~   89 (252)
                      |+.|+||||+||..|+.++|++|+++|++++. +|..|+||||.||..++.   ..+..+++.........|..|.||||
T Consensus       104 D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~-~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~~~~~~d~~g~t~lh  182 (301)
T d1sw6a_         104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLY-GDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILH  182 (301)
T ss_dssp             STTCCCHHHHHHHTTCHHHHHHHHHTTCCTTB-CCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGGGGEECTTCCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCc-CCcccccHHHHhhhcccchhhhhHHHHHHHHhhhhhhcccccCCHHH
Confidence            89999999999999999999999999999987 899999999999987753   22333444333456778899999999


Q ss_pred             HHHHcCC----hHHHH--------HHHHHHhccc-------------------------------ccccccccCCCCCcH
Q 025505           90 LAVKKSR----SDAFE--------ALVDEAKNHR-------------------------------KEHLFTWKDKEGNTV  126 (252)
Q Consensus        90 ~a~~~~~----~~~~~--------~Ll~~~~~~~-------------------------------~~~~~~~~~~~g~t~  126 (252)
                      +++..+.    ..+++        +++..+....                               ....+|.+|..|+||
T Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~Tp  262 (301)
T d1sw6a_         183 HIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTC  262 (301)
T ss_dssp             HHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCH
T ss_pred             HHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCH
Confidence            9886544    22332        3333222111                               011368889999999


Q ss_pred             HHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhh
Q 025505          127 LHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCN  170 (252)
Q Consensus       127 Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~  170 (252)
                      ||+|++.|+.++|++|++      .|++++.+|+.|+|||++|+
T Consensus       263 Lh~A~~~g~~~iv~~Ll~------~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         263 LNIAARLGNISIVDALLD------YGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             HHHHHHHCCHHHHHHHHH------TTCCTTCCCTTSCCGGGGTC
T ss_pred             HHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHHcC
Confidence            999999999999999996      89999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-26  Score=191.83  Aligned_cols=166  Identities=22%  Similarity=0.234  Sum_probs=150.0

Q ss_pred             hHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCCh
Q 025505           18 TTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~   97 (252)
                      ||||+||..|+.++|++|+++|++++. .|..|.||||+|+..|+.+++++|+++| ++++.++..|.||||+|+..|+.
T Consensus         2 TpL~~Aa~~g~~~~v~~Ll~~g~~in~-~d~~g~TpL~~A~~~g~~~iv~~Ll~~g-adi~~~~~~g~t~L~~A~~~g~~   79 (408)
T d1n11a_           2 TPLHVASFMGHLPIVKNLLQRGASPNV-SNVKVETPLHMAARAGHTEVAKYLLQNK-AKVNAKAKDDQTPLHCAARIGHT   79 (408)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCC-SSSCCCCHHHHHHHHTCHHHHHHHHHHT-CCSSCCCTTSCCHHHHHHHHTCH
T ss_pred             ChHHHHHHCcCHHHHHHHHHCCCCCCC-CCCCCCCHHHHHHHcCCHHHHHHHHHCc-CCCCCCCCCCCCHHHHHHHcCCH
Confidence            999999999999999999999999988 8999999999999999999999999999 68999999999999999999999


Q ss_pred             HHHHHHHHHHhccc---------------------------ccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccc
Q 025505           98 DAFEALVDEAKNHR---------------------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRR  150 (252)
Q Consensus        98 ~~~~~Ll~~~~~~~---------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~  150 (252)
                      +++++|+.......                           ........+..+.++++.|+..++.+++++|++      
T Consensus        80 ~~~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~------  153 (408)
T d1n11a_          80 NMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE------  153 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH------
T ss_pred             HHHHHHHHhhhccccccccccchhhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHH------
Confidence            99999998765432                           112445567788999999999999999999996      


Q ss_pred             eeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCCC
Q 025505          151 IMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSPQ  195 (252)
Q Consensus       151 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~~  195 (252)
                      .+.+++..+..|.+||++|+.    .++.+++++|+++|++++..
T Consensus       154 ~~~~~~~~~~~~~~~L~~A~~----~~~~~~~~~Ll~~g~~~~~~  194 (408)
T d1n11a_         154 RDAHPNAAGKNGLTPLHVAVH----HNNLDIVKLLLPRGGSPHSP  194 (408)
T ss_dssp             TTCCTTCCCSSCCCHHHHHHH----TTCHHHHHHHGGGTCCSCCC
T ss_pred             cCCCCCcCCCcCchHHHHHHH----cCCHHHHHHHHhcCCccccc
Confidence            788889999999999999998    88899999999999987653

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-27  Score=164.48  Aligned_cols=121  Identities=15%  Similarity=0.101  Sum_probs=112.6

Q ss_pred             CCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCc-hHHHHHHH
Q 025505           15 RGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGE-TALHLAVK   93 (252)
Q Consensus        15 ~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~-t~L~~a~~   93 (252)
                      .+.++||+|+..|+.++|++|+++|++++. .+..|.||||+|+ .|+.+++++|++++ .+++.++..+. ||||+|++
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~-~~~~g~t~l~~a~-~g~~~~v~~Ll~~g-a~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNA-PNSYGRRPIQVMM-MGSARVAELLLLHG-AEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTC-CCSSSCCTTTSSC-TTCHHHHHHHHTTT-CCCCCCCTTTCCCHHHHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCcccc-ccccccccccccc-cccccccccccccc-cccccccccccccccccccc
Confidence            467899999999999999999999999987 8999999999775 79999999999999 67888888776 69999999


Q ss_pred             cCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           94 KSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        94 ~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      .|+.+++++|++.++      +++.+|..|+||||+|+..|+.+++++|++
T Consensus        79 ~g~~~~v~~Ll~~ga------~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGA------RLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HTCHHHHHHHHHHTC------CSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccc------ccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999998      889999999999999999999999999985

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.7e-26  Score=190.45  Aligned_cols=162  Identities=25%  Similarity=0.307  Sum_probs=149.7

Q ss_pred             cccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHH
Q 025505            9 ASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETAL   88 (252)
Q Consensus         9 ~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L   88 (252)
                      ....+..|.|||++|+..++.++++.+++.+...+. .+..|.|||+.|+..++.+++++|++++ .+++..+..+.|||
T Consensus       224 ~~~~~~~~~t~l~~a~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~l~~a~~~~~~~i~~~Ll~~g-~~~~~~~~~~~t~L  301 (408)
T d1n11a_         224 ANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL-GNKSGLTPLHLVAQEGHVPVADVLIKHG-VMVDATTRMGYTPL  301 (408)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCSSCCCHH
T ss_pred             ccccCCCCCCHHHHHHHhCcHhHhhhhhcccccccc-ccCCCCChhhhhhhcCcHHHHHHHHHCC-Cccccccccccccc
Confidence            445677889999999999999999999999888877 8889999999999999999999999999 67888899999999


Q ss_pred             HHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHh
Q 025505           89 HLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQL  168 (252)
Q Consensus        89 ~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~  168 (252)
                      |.++..++.++++++++.+.      +++.+|..|.||||+|++.|+.++|++|++      +|++++.+|.+|+||||+
T Consensus       302 ~~~~~~~~~~~~~~ll~~g~------~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~------~GAd~n~~d~~G~t~L~~  369 (408)
T d1n11a_         302 HVASHYGNIKLVKFLLQHQA------DVNAKTKLGYSPLHQAAQQGHTDIVTLLLK------NGASPNEVSSDGTTPLAI  369 (408)
T ss_dssp             HHHHHSSCSHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH------TTCCSCCCCSSSCCHHHH
T ss_pred             hhhcccCcceeeeeeccccc------cccccCCCCCCHHHHHHHcCCHHHHHHHHH------CCCCCCCCCCCCCCHHHH
Confidence            99999999999999999998      899999999999999999999999999996      899999999999999999


Q ss_pred             hhhcCCCchhHHHHHHHHHh
Q 025505          169 CNANSQDSAFKEIGWIIQRA  188 (252)
Q Consensus       169 a~~~~~~~~~~~~~~~L~~~  188 (252)
                      |+.    .++.+++++|...
T Consensus       370 A~~----~~~~~iv~~L~~~  385 (408)
T d1n11a_         370 AKR----LGYISVTDVLKVV  385 (408)
T ss_dssp             HHH----TTCHHHHHHHHHH
T ss_pred             HHH----cCCHHHHHHHHHH
Confidence            999    8888999877543

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.93  E-value=2e-28  Score=198.42  Aligned_cols=132  Identities=11%  Similarity=0.115  Sum_probs=76.2

Q ss_pred             ccccCCCChHHHHHHhCCCHHHHHH---HhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC--CCC
Q 025505           10 SIKNQRGETTMHLLSTDGDAETVRI---FGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT--SNG   84 (252)
Q Consensus        10 ~~~d~~g~t~L~~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~--~~g   84 (252)
                      ..+|..|.||||+||..|+.+++++   |++.|++++. .+..|+||||+||..|+.++|++|++++ .+++..+  .+|
T Consensus        84 ~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~~~in~-~~~~g~taL~~Aa~~G~~~~v~~Ll~~g-~~~~~~~~~~~g  161 (346)
T d2ajaa1          84 HKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV-IQAENYQAFRLAAENGHLHVLNRLCELA-PTEIMAMIQAEN  161 (346)
T ss_dssp             HHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC---CHHHHHHHHHHHHTTCHHHHHHHHHSC-TTTHHHHHSHHH
T ss_pred             HhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCCCcccc-cCCCCCCHHHHHHHCCCHHHHHHHHHcC-CCccccccccCC
Confidence            4455666667777776666655444   5566666665 6666666777777777777777776666 3333332  346


Q ss_pred             chHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcc
Q 025505           85 ETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIREN  146 (252)
Q Consensus        85 ~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~  146 (252)
                      .||||+|+..|+.+++++|++.++..   ...+..+..+.||+|.|+.+|+.++|++|++.|
T Consensus       162 ~t~L~~Aa~~g~~~iv~~Ll~~~~~~---~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~g  220 (346)
T d2ajaa1         162 YHAFRLAAENGHLHVLNRLCELAPTE---ATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP  220 (346)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHSCGGG---HHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSH
T ss_pred             CChhHHHHHHhhHHHHHHHHHcCCcc---cccccccCCCcchhhHHhhcCHHHHHHHHHhCC
Confidence            66777777667777777666655411   012223334455566666666666666666544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=2e-27  Score=162.82  Aligned_cols=107  Identities=19%  Similarity=0.186  Sum_probs=95.9

Q ss_pred             ChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCC
Q 025505           17 ETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSR   96 (252)
Q Consensus        17 ~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~   96 (252)
                      .|||++|+..|+.++|+.|+++|++++. .+..|+||||+|+..|+.+++++|++++ .+++.+|..|.||||+|+..|+
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g~d~n~-~~~~g~t~lh~A~~~~~~~~~~~ll~~g-~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKGEDVNR-TLEGGRKPLHYAADCGQLEILEFLLLKG-ADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTTCCCCC-CSSSSCCTTHHHHHHSTTTHHHHHHHSS-CTTTCCSSSCSCHHHHHHTTTC
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhhhcccc-cccccccccccccccccccccccccccc-ceeeecccccccchhhhhhcCc
Confidence            4799999999999999999999998887 8889999999999999999999999988 6788889999999999999999


Q ss_pred             hHHHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 025505           97 SDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT  131 (252)
Q Consensus        97 ~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  131 (252)
                      .+++++|++.|+      +++.+|..|.||||+|.
T Consensus        81 ~~~v~~Ll~~Ga------d~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          81 VSCVKLLLSKGA------DKTVKGPDGLTALEATD  109 (118)
T ss_dssp             CHHHHHHHTTCC------CSSSSSSSTCCCCCTCS
T ss_pred             hhhhhhhhcccc------cceeeCCCCCCHHHHHh
Confidence            999999999888      78888999999998874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.93  E-value=4.4e-27  Score=161.15  Aligned_cols=108  Identities=20%  Similarity=0.190  Sum_probs=102.9

Q ss_pred             CcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHH
Q 025505           51 MIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLA  130 (252)
Q Consensus        51 ~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A  130 (252)
                      .|||++|+..|+.+++++|++++ .+++.++..|.||||+|+..++.+++++|++.++      +++.+|..|+||||+|
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g-~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~------din~~d~~g~tpLh~A   75 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKG-EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGA------DINAPDKHHITPLLSA   75 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTT-CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSC------TTTCCSSSCSCHHHHH
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhh-hccccccccccccccccccccccccccccccccc------eeeecccccccchhhh
Confidence            48999999999999999999999 7899999999999999999999999999999998      8899999999999999


Q ss_pred             HhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhh
Q 025505          131 TLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNA  171 (252)
Q Consensus       131 ~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~  171 (252)
                      +..|+.+++++|++      .|++++.+|.+|+||||+|..
T Consensus        76 ~~~~~~~~v~~Ll~------~Gad~~~~d~~G~t~l~~a~~  110 (118)
T d1myoa_          76 VYEGHVSCVKLLLS------KGADKTVKGPDGLTALEATDN  110 (118)
T ss_dssp             HTTTCCHHHHHHHT------TCCCSSSSSSSTCCCCCTCSS
T ss_pred             hhcCchhhhhhhhc------ccccceeeCCCCCCHHHHHhH
Confidence            99999999999996      899999999999999999853

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.6e-25  Score=161.02  Aligned_cols=133  Identities=21%  Similarity=0.239  Sum_probs=122.1

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      |...+..++..|..|+||||+|+ .|+.+++++|++.+.+++. .+..|.+|++.++..++.++++.+++++ .+++.++
T Consensus        22 L~~~~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~l~~~-~~~n~~~   98 (156)
T d1bd8a_          22 LHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGASPNV-QDTSGTSPVHDAARTGFLDTLKVLVEHG-ADVNVPD   98 (156)
T ss_dssp             HHTTCCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHTTCHHHHHHHHHTT-CCSCCCC
T ss_pred             HHhCCCCCCccCCCCCccccccc-ccccccccccccccccccc-cccccccccccccccccccccccccccc-ccccccc
Confidence            44556678899999999999987 4889999999999999987 8889999999999999999999999999 6788999


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ..|.||||+|+..|+.+++++|+ .++      +++.+|..|+||||+|+..|+.+++++|++
T Consensus        99 ~~~~t~L~~A~~~~~~~i~~~L~-~~~------~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  154 (156)
T d1bd8a_          99 GTGALPIHLAVQEGHTAVVSFLA-AES------DLHRRDARGLTPLELALQRGAQDLVDILQG  154 (156)
T ss_dssp             TTSCCHHHHHHHHTCHHHHHHHH-TTS------CTTCCCTTSCCHHHHHHHSCCHHHHHHHHT
T ss_pred             CCCCeeecccccccccccccccc-ccc------cccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            99999999999999999999887 566      788999999999999999999999999996

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.7e-26  Score=158.83  Aligned_cols=121  Identities=17%  Similarity=0.169  Sum_probs=111.5

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCC-cHH
Q 025505           49 SSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGN-TVL  127 (252)
Q Consensus        49 ~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~-t~L  127 (252)
                      .+.++||+|+..|+.+++++|++++ .+++.++..|.||+|+|+ .|+.+++++|++.++      +++.++..+. |||
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~g-ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga------~~~~~~~~~~~~~L   73 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAG-ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGA------EPNCADPATLTRPV   73 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTT-CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTC------CCCCCCTTTCCCHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcC-Cccccccccccccccccc-ccccccccccccccc------cccccccccccccc
Confidence            3568999999999999999999998 789999999999999775 699999999999998      7888888775 699


Q ss_pred             HHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHH
Q 025505          128 HLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQR  187 (252)
Q Consensus       128 h~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~  187 (252)
                      |+|++.|+.+++++|++      .|++++.+|..|+||||+|+.    .++.+++++|++
T Consensus        74 ~~A~~~g~~~~v~~Ll~------~ga~~~~~d~~G~T~l~~A~~----~g~~~~v~~Lls  123 (125)
T d1bi7b_          74 HDAAREGFLDTLVVLHR------AGARLDVRDAWGRLPVDLAEE----LGHRDVARYLRA  123 (125)
T ss_dssp             HHHHHHTCHHHHHHHHH------HTCCSSCCCTTCCCHHHHHHH----HTCHHHHHHHSS
T ss_pred             ccccccccccccccccc------cccccccccCCCCCHHHHHHH----cCCHHHHHHHHh
Confidence            99999999999999996      889999999999999999999    899999999875

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=155.81  Aligned_cols=124  Identities=19%  Similarity=0.225  Sum_probs=72.3

Q ss_pred             cHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHH
Q 025505           52 IPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLAT  131 (252)
Q Consensus        52 t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~  131 (252)
                      ++|+.||..|+.++++.|++++ .+++.+|.+|.||||+|+..++.+++++|++.+.      +++..|.+|+||||+|+
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g-~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~------~~~~~d~~g~tpLh~A~   75 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV-DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGV------NVNAADSDGWTPLHCAA   75 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT-SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTC------CTTCCCTTCCCHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC-CCcccccccccccccccccccccccccccccccc------ccccccccCcccccccc
Confidence            4555666666666666666655 4555566666666666666666666666666655      55566666666666666


Q ss_pred             hCChHHHHHHHHhcccccceeeeeecccC-CCCCHhHhhhhcCCCchhHHHHHHHHHhcc
Q 025505          132 LNKLKQIVELLIRENSNRRIMIRINTVNK-EGQTTLQLCNANSQDSAFKEIGWIIQRAIA  190 (252)
Q Consensus       132 ~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga  190 (252)
                      ..|+.+++++|++      +|++++..+. .|+||++++....  .++.+++++|+..+.
T Consensus        76 ~~g~~~~v~~Ll~------~ga~v~~~~~~~~~~~~~~~~a~~--~g~~eiv~~L~~~~~  127 (130)
T d1ycsb1          76 SCNNVQVCKFLVE------SGAAVFAMTYSDMQTAADKCEEME--EGYTQCSQFLYGVQE  127 (130)
T ss_dssp             HTTCHHHHHHHHH------TTCCTTCCCSSSCCCHHHHCCSSS--TTCCCHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHH------cCCCcccccCCCCCCHHHHHHHHH--cChHHHHHHHHhHHH
Confidence            6666666666664      5555655543 3566655532111  445566666665443

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2e-25  Score=155.46  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=109.1

Q ss_pred             hHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCCh
Q 025505           18 TTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRS   97 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~   97 (252)
                      ++|+.||..|+.++|+.|+++|++++. +|..|+||||+|+..|+.+++++|++.+ .+++.+|.+|.||||+|+..|+.
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g~d~n~-~d~~g~t~Lh~A~~~~~~~~~~~ll~~g-~~~~~~d~~g~tpLh~A~~~g~~   80 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEVDDPSL-PNDEGITALHNAVCAGHTEIVKFLVQFG-VNVNAADSDGWTPLHCAASCNNV   80 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTTSSCCC-CCTTSCCHHHHHHHHTCHHHHHHHHHHT-CCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHcCCCccc-cccccccccccccccccccccccccccc-cccccccccCcccccccchhhHH
Confidence            679999999999999999999999987 8999999999999999999999999998 78899999999999999999999


Q ss_pred             HHHHHHHHHHhcccccccccccCC-CCCcHHHHH--HhCChHHHHHHHHh
Q 025505           98 DAFEALVDEAKNHRKEHLFTWKDK-EGNTVLHLA--TLNKLKQIVELLIR  144 (252)
Q Consensus        98 ~~~~~Ll~~~~~~~~~~~~~~~~~-~g~t~Lh~A--~~~~~~~~v~~Ll~  144 (252)
                      +++++|+++|+      +++..+. .++|+++++  +..|+.+++++|++
T Consensus        81 ~~v~~Ll~~ga------~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~  124 (130)
T d1ycsb1          81 QVCKFLVESGA------AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYG  124 (130)
T ss_dssp             HHHHHHHHTTC------CTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHH
T ss_pred             HHHHHHHHcCC------CcccccCCCCCCHHHHHHHHHcChHHHHHHHHh
Confidence            99999999998      6776654 588887765  56788999999996

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.92  E-value=2.7e-26  Score=179.80  Aligned_cols=164  Identities=15%  Similarity=0.135  Sum_probs=130.3

Q ss_pred             ChHHHHHHh-CCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHH--------hCCccccccCCCCchH
Q 025505           17 ETTMHLLST-DGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVS--------ICPESLEKLTSNGETA   87 (252)
Q Consensus        17 ~t~L~~A~~-~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~--------~~~~~~~~~~~~g~t~   87 (252)
                      +||||+++. .|+.++++.|.+.+.+..  .+..|+||||+||..|+.+++++|+.        +| ++++.+|.+|.||
T Consensus         1 ~~p~~~~~~~~~~~~~~~~l~~~~~n~~--~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~G-advn~~d~~G~Tp   77 (277)
T d2fo1e1           1 ESPIKLHTEAAGSYAITEPITRESVNII--DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAG-ADVNAMDCDENTP   77 (277)
T ss_dssp             CCCCHHHHHHHSSSCCCSCCSTTTTTTC--CCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC-CCTTCCCTTSCCH
T ss_pred             CChHHHHHHhCCCHHHHHHHHhcCCCcC--CCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcC-CCccccCCCCCee
Confidence            489886654 577888888888776653  34569999999999999999988754        45 6789999999999


Q ss_pred             HHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccc-------------------
Q 025505           88 LHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSN-------------------  148 (252)
Q Consensus        88 L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~-------------------  148 (252)
                      ||+|+..|+.+++++|+++|+      +++..+..|.|||++|+..++.++++++......                   
T Consensus        78 Lh~A~~~g~~~iv~~Ll~~Ga------d~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  151 (277)
T d2fo1e1          78 LMLAVLARRRRLVAYLMKAGA------DPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVA  151 (277)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTC------CSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHH
T ss_pred             ecccccccccccccccccccc------ccccccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHH
Confidence            999999999999999999999      7899999999999999999999888888764311                   


Q ss_pred             ----------------------cceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHH-HhccccC
Q 025505          149 ----------------------RRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQ-RAIAQQS  193 (252)
Q Consensus       149 ----------------------~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~-~~ga~~~  193 (252)
                                            .......+..+..|.||||++..    .++.+++++++ ..+.+..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~----~~~~~~~~~~l~~~~~~~~  215 (277)
T d2fo1e1         152 HNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ----VSNMPIVKYLVGEKGSNKD  215 (277)
T ss_dssp             HSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS----SCCHHHHHHHHHHSCCCTT
T ss_pred             hcccccccccccccccccccccccccccccccccCCCCccccccc----ccccccccccccccccccc
Confidence                                  11122234456789999999988    77888888765 4555444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=4.9e-24  Score=152.97  Aligned_cols=134  Identities=22%  Similarity=0.284  Sum_probs=122.9

Q ss_pred             cccCccccccccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccC
Q 025505            2 ARLWPQLASIKNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLT   81 (252)
Q Consensus         2 l~~~p~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~   81 (252)
                      |+...+ ++.+|..|.||||+|+ .|+.+++++|++++++++. .+..+.++++.++..++.+.++.|++.+ ..++..+
T Consensus        21 l~~g~d-~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~~~~-~~~~~~~~l~~~~~~~~~~~~~~l~~~~-~~~~~~~   96 (156)
T d1ihba_          21 LQNNVN-VNAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDL-KDRTGFAVIHDAARAGFLDTLQTLLEFQ-ADVNIED   96 (156)
T ss_dssp             TTSCCC-TTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCCTTC-CCTTSCCHHHHHHHHTCHHHHHHHHHTT-CCTTCCC
T ss_pred             HHCCCC-cCccCCcccccccccc-ccccccccccccccccccc-ccccCccccccccccccccccccccccc-ccccccc
Confidence            444444 7889999999999886 7899999999999999987 8999999999999999999999999998 6788899


Q ss_pred             CCCchHHHHHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHh
Q 025505           82 SNGETALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIR  144 (252)
Q Consensus        82 ~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~  144 (252)
                      ..|.+|+|+|+..++.+++++|+++++.     +.+.+|..|.||||+|+..++.+++++|++
T Consensus        97 ~~~~~~l~~a~~~~~~~~~~~Ll~~~~~-----~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~  154 (156)
T d1ihba_          97 NEGNLPLHLAAKEGHLRVVEFLVKHTAS-----NVGHRNHKGDTACDLARLYGRNEVVSLMQA  154 (156)
T ss_dssp             TTSCCHHHHHHHTTCHHHHHHHHHHSCC-----CTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccc-----cccccCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            9999999999999999999999999864     678889999999999999999999999996

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=1.1e-23  Score=158.10  Aligned_cols=155  Identities=20%  Similarity=0.217  Sum_probs=130.5

Q ss_pred             HHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHh
Q 025505           29 AETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAK  108 (252)
Q Consensus        29 ~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~  108 (252)
                      .|+|++|+++|++++...|.+|.||||+||..|+.+++++|++.+ ..++.++..+.++++.++..+.............
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~g~~e~v~~Ll~~g-~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRLLDAG-ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRA   80 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHhhc-cccccccccccccccccccccccccccccccccc
Confidence            589999999999998757899999999999999999999999998 6788888888888888887766554433322211


Q ss_pred             ccc----------------------------ccccccccCCCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccC
Q 025505          109 NHR----------------------------KEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNK  160 (252)
Q Consensus       109 ~~~----------------------------~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  160 (252)
                      ...                            ...+++..+..|+|||++++..+..++++.+++      .+.+++..|.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~------~~~~~~~~d~  154 (209)
T d1ot8a_          81 TNLNARMHDGTTPLILAARLAIEGMVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLM------HHANRDAQDD  154 (209)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCTTHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHH------TTCCTTCCCT
T ss_pred             cccccccccccccccccccccchhhhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecc------cccccccccc
Confidence            110                            112677889999999999999999999999996      7888999999


Q ss_pred             CCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          161 EGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       161 ~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      .|.||||+|+.    .++.+++++|+++|++++.
T Consensus       155 ~g~TpL~~A~~----~g~~~~v~~Ll~~gad~n~  184 (209)
T d1ot8a_         155 KDETPLFLAAR----EGSYEASKALLDNFANREI  184 (209)
T ss_dssp             TCCCHHHHHHH----TTCHHHHHHHHHTTCCTTC
T ss_pred             ccccccchhcc----ccHHHHHHHHHHCCCCCCC
Confidence            99999999999    8999999999999998764

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.90  E-value=3.3e-23  Score=147.86  Aligned_cols=123  Identities=20%  Similarity=0.183  Sum_probs=109.8

Q ss_pred             hHHHHHHhCCCHHHHHHHhhcCcccccc-----ccCCCCcHHHHHHHc---CCHHHHHHHHHhCCccccccCCCCchHHH
Q 025505           18 TTMHLLSTDGDAETVRIFGEINRELCLE-----VDNSSMIPLHRAALD---GNSDVIRALVSICPESLEKLTSNGETALH   89 (252)
Q Consensus        18 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~-----~~~~g~t~Lh~A~~~---g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~   89 (252)
                      ..|+.|+..++...+..++..|.++...     .+..|+||||+|+..   ++.+++++|++++ .+++.+|..|.||||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g-adin~~d~~g~TpLh   86 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS-GNLDKQTGKGSTALH   86 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC-SCTTCCCTTCCCHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcC-CChhhhhhhhccccc
Confidence            3466888999999999999988876541     267899999999974   6889999999999 688999999999999


Q ss_pred             HHHHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHHHhccc
Q 025505           90 LAVKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELLIRENS  147 (252)
Q Consensus        90 ~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~Ll~~~~  147 (252)
                      +|+..|+.+++++|+++++      +++.+|..|.||||+|++.|+.+++++|++.++
T Consensus        87 ~A~~~~~~~~v~~Ll~~ga------d~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~  138 (154)
T d1dcqa1          87 YCCLTDNAECLKLLLRGKA------SIEIANESGETPLDIAKRLKHEHCEELLTQALS  138 (154)
T ss_dssp             HHHHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             cccccccccccccccccCc------cccccCCCCCCHHHHHHHcCCHHHHHHHHHhCC
Confidence            9999999999999999999      889999999999999999999999999997443

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.5e-22  Score=144.44  Aligned_cols=125  Identities=22%  Similarity=0.240  Sum_probs=109.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHhCCcccc------ccCCCCchHHHHHHHc---CChHHHHHHHHHHhcccccccccccCCCC
Q 025505           53 PLHRAALDGNSDVIRALVSICPESLE------KLTSNGETALHLAVKK---SRSDAFEALVDEAKNHRKEHLFTWKDKEG  123 (252)
Q Consensus        53 ~Lh~A~~~g~~~~v~~Ll~~~~~~~~------~~~~~g~t~L~~a~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g  123 (252)
                      .|+.|+..+++..+..++..+. +..      ..+..|.||||+|++.   +..+++++|+++++      +++.+|..|
T Consensus         9 ~L~~Av~~~dl~~l~~~~~~g~-d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~ga------din~~d~~g   81 (154)
T d1dcqa1           9 SLCEAVKTRDIFGLLQAYADGV-DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSG------NLDKQTGKG   81 (154)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTC-CTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCS------CTTCCCTTC
T ss_pred             HHHHHHHhCCHHHHHHHHHcCC-CcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCC------Chhhhhhhh
Confidence            4567889999999999888873 322      2367899999999975   56789999999999      899999999


Q ss_pred             CcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          124 NTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       124 ~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      +||||+|+..|+.+++++|++      .|++++.+|..|+||||+|+.    .++.+++++|++.++....
T Consensus        82 ~TpLh~A~~~~~~~~v~~Ll~------~gad~~~~d~~g~tpL~~A~~----~~~~~i~~~L~~~~~~~~~  142 (154)
T d1dcqa1          82 STALHYCCLTDNAECLKLLLR------GKASIEIANESGETPLDIAKR----LKHEHCEELLTQALSGRFN  142 (154)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHH------TTCCTTCCCTTSCCHHHHHHH----TTCHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccccccccccccc------cCccccccCCCCCCHHHHHHH----cCCHHHHHHHHHhCCCCCC
Confidence            999999999999999999996      899999999999999999999    8899999999999876643

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=8.4e-23  Score=145.93  Aligned_cols=123  Identities=20%  Similarity=0.239  Sum_probs=115.5

Q ss_pred             ccCCCChHHHHHHhCCCHHHHHHHhhcCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHH
Q 025505           12 KNQRGETTMHLLSTDGDAETVRIFGEINRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLA   91 (252)
Q Consensus        12 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a   91 (252)
                      .|..|+||||+|+..++.++++.++........ .+..+.++++.++...+.++++++..++ .+.+.++.+|.||||+|
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~g~T~L~~A  107 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDA-RTKVDRTPLHMAASEGHANIVEVLLKHG-ADVNAKDMLKMTALHWA  107 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTC-CCTTCCCHHHHHHHHTCHHHHHHHHTTT-CCTTCCCTTSCCHHHHH
T ss_pred             cccCCCccccccccccccccccccccccccccc-cccccccccccccccccceeeecccccC-CccccccccCchHHHhh
Confidence            689999999999999999999999998877765 7788889999999999999999999998 67888999999999999


Q ss_pred             HHcCChHHHHHHHHHHhcccccccccccCCCCCcHHHHHHhCChHHHHHHH
Q 025505           92 VKKSRSDAFEALVDEAKNHRKEHLFTWKDKEGNTVLHLATLNKLKQIVELL  142 (252)
Q Consensus        92 ~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~v~~L  142 (252)
                      +..|+.+++++|++.++      +++..|..|.||||+|+.+|+.+++++|
T Consensus       108 ~~~g~~~iv~~ll~~ga------d~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         108 TEHNHQEVVELLIKYGA------DVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHTTCHHHHHHHHHTTC------CTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             hhcchhheeeecccccc------CCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            99999999999999999      8899999999999999999999999976

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.3e-22  Score=156.85  Aligned_cols=60  Identities=25%  Similarity=0.279  Sum_probs=52.8

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHHhCCcccccc-CCCCchHHHHHHHcCChHHHHHHHHHHhcc
Q 025505           50 SMIPLHRAALDGNSDVIRALVSICPESLEKL-TSNGETALHLAVKKSRSDAFEALVDEAKNH  110 (252)
Q Consensus        50 g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~-~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~  110 (252)
                      +.|+||+|+..|+.++|++|+++| .+++.+ +..|.||||+|+..|+.+++++|++.+...
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G-~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~   65 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGG-ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADP   65 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT-CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCC-CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccc
Confidence            568999999999999999999999 566655 457999999999999999999999876544

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=3e-22  Score=158.88  Aligned_cols=147  Identities=22%  Similarity=0.209  Sum_probs=111.9

Q ss_pred             cCccccccccCCCCcHHHHHHHcCCHHHHHHHHHhCCccccccCCCCchHHHHHHHcCC---hHHHHHHHHHHhcccccc
Q 025505           38 INRELCLEVDNSSMIPLHRAALDGNSDVIRALVSICPESLEKLTSNGETALHLAVKKSR---SDAFEALVDEAKNHRKEH  114 (252)
Q Consensus        38 ~~~~~~~~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~a~~~~~---~~~~~~Ll~~~~~~~~~~  114 (252)
                      .+.+++...|..|+||||+||..|+.++|++|++++ ++++.+|..|.||||.|+..++   ...++.+++....     
T Consensus        95 ~~~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g-ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~~-----  168 (301)
T d1sw6a_          95 TQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG-SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYP-----  168 (301)
T ss_dssp             SCCCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT-CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGG-----
T ss_pred             cCCCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC-CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHhh-----
Confidence            345666534899999999999999999999999999 7899999999999999998775   2334445554332     


Q ss_pred             cccccCCCCCcHHHHHHhCCh----H--------HHHHHHHhcccccc-------------------------------e
Q 025505          115 LFTWKDKEGNTVLHLATLNKL----K--------QIVELLIRENSNRR-------------------------------I  151 (252)
Q Consensus       115 ~~~~~~~~g~t~Lh~A~~~~~----~--------~~v~~Ll~~~~~~~-------------------------------~  151 (252)
                      .+...|..|+||||.++..+.    .        .++.++++.+....                               .
T Consensus       169 ~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         169 CLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             GGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence            466788999999998875432    2        23444444332200                               0


Q ss_pred             eeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          152 MIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       152 ~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ...+|.+|..|+||||+|+.    .++.+++++|+++||+++.
T Consensus       249 ~~~in~~D~~G~TpLh~A~~----~g~~~iv~~Ll~~GAd~~~  287 (301)
T d1sw6a_         249 ANMLNAQDSNGDTCLNIAAR----LGNISIVDALLDYGADPFI  287 (301)
T ss_dssp             HHTTTCCCTTSCCHHHHHHH----HCCHHHHHHHHHTTCCTTC
T ss_pred             hcCccCCCCCCCCHHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            11267889999999999999    8899999999999999875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=7.2e-25  Score=177.29  Aligned_cols=161  Identities=12%  Similarity=0.040  Sum_probs=121.0

Q ss_pred             HHHHHHhCCCHHHHHHHhhcCccccc----------cccCCCCcHHHHHHHcCCHHHHHH---HHHhCCccccccCCCCc
Q 025505           19 TMHLLSTDGDAETVRIFGEINRELCL----------EVDNSSMIPLHRAALDGNSDVIRA---LVSICPESLEKLTSNGE   85 (252)
Q Consensus        19 ~L~~A~~~g~~~~v~~Ll~~~~~~~~----------~~~~~g~t~Lh~A~~~g~~~~v~~---Ll~~~~~~~~~~~~~g~   85 (252)
                      .++.+...+..++.+.+...+.+...          .++..|.||||+||..|+.+++++   |++.+ ..++.++.+|.
T Consensus        49 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~-~~in~~~~~g~  127 (346)
T d2ajaa1          49 HIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSD-EIVKVIQAENY  127 (346)
T ss_dssp             HHCCCCSSHHHHHHHHHHHHHHHTTTTCTTHHHHHHHHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC-SSCC--CHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHcchhhccchhhhhhHHHhccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC-CcccccCCCCC
Confidence            33334444456666666554433221          257789999999999999887776   67777 78999999999


Q ss_pred             hHHHHHHHcCChHHHHHHHHHHhcccccccccccC--CCCCcHHHHHHhCChHHHHHHHHhcccccceeeeeecccCCCC
Q 025505           86 TALHLAVKKSRSDAFEALVDEAKNHRKEHLFTWKD--KEGNTVLHLATLNKLKQIVELLIRENSNRRIMIRINTVNKEGQ  163 (252)
Q Consensus        86 t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~--~~g~t~Lh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~  163 (252)
                      ||||+|++.|+.+++++|++.++      +++..+  .+|+||||+|+..|+.++|++|++.++.   ..+.+..+..|.
T Consensus       128 taL~~Aa~~G~~~~v~~Ll~~g~------~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~---~~~~~~~~~~~~  198 (346)
T d2ajaa1         128 QAFRLAAENGHLHVLNRLCELAP------TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAENYY  198 (346)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHSCT------TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCC------CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCc---ccccccccCCCc
Confidence            99999999999999999999988      566554  4689999999999999999999973321   112344455677


Q ss_pred             CHhHhhhhcCCCchhHHHHHHHHHhccccC
Q 025505          164 TTLQLCNANSQDSAFKEIGWIIQRAIAQQS  193 (252)
Q Consensus       164 t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~  193 (252)
                      ||++.|+.    .++.+++++|++.|++..
T Consensus       199 t~l~~A~~----~g~~~iv~~Ll~~ga~~~  224 (346)
T d2ajaa1         199 AFRWAAVG----RGHHNVINFLLDCPVMLA  224 (346)
T ss_dssp             HHHHHHST----TCCHHHHHHHTTSHHHHH
T ss_pred             chhhHHhh----cCHHHHHHHHHhCCCCcc
Confidence            88888887    889999999999998764

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4e-21  Score=144.60  Aligned_cols=136  Identities=23%  Similarity=0.232  Sum_probs=115.8

Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHH----hCCccccccCCCCchHHHHHHHcCChHHHHHHHHHHhcccccc---------
Q 025505           48 NSSMIPLHRAALDGNSDVIRALVS----ICPESLEKLTSNGETALHLAVKKSRSDAFEALVDEAKNHRKEH---------  114 (252)
Q Consensus        48 ~~g~t~Lh~A~~~g~~~~v~~Ll~----~~~~~~~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~~~~~~~~~---------  114 (252)
                      ++|.||||+||..|+.++++.|++    .+ .+++.+|..|.||||+|+..|+.+++++|+++++..+...         
T Consensus         1 ~dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g-~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~   79 (228)
T d1k1aa_           1 EDGDTPLHIAVVQGNLPAVHRLVNLFQQGG-RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHL   79 (228)
T ss_dssp             CTTCCHHHHHHHTTCHHHHHHHHHHHHHTT-CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCccHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCccCCCCCccceehhccccccccccccccccccccccccccccccc
Confidence            369999999999999999999886    44 6789999999999999999999999999999887543100         


Q ss_pred             --------------------------------------------------------cccccCCCCCcHHHHHHhCChHHH
Q 025505          115 --------------------------------------------------------LFTWKDKEGNTVLHLATLNKLKQI  138 (252)
Q Consensus       115 --------------------------------------------------------~~~~~~~~g~t~Lh~A~~~~~~~~  138 (252)
                                                                              ........+.++|+.|+..+...+
T Consensus        80 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~  159 (228)
T d1k1aa_          80 ACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSM  159 (228)
T ss_dssp             HHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHH
T ss_pred             ccccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhh
Confidence                                                                    001133456789999999999999


Q ss_pred             HHHHHhcccccceeeeeecccCCCCCHhHhhhhcCCCchhHHHHHHHHHhccccCC
Q 025505          139 VELLIRENSNRRIMIRINTVNKEGQTTLQLCNANSQDSAFKEIGWIIQRAIAQQSP  194 (252)
Q Consensus       139 v~~Ll~~~~~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~L~~~ga~~~~  194 (252)
                      ++.+++      .+.+++.+|..|.||||+|+.    .++.+++++|+++|++++.
T Consensus       160 ~~~~~~------~~~~~~~~d~~g~t~L~~A~~----~g~~~~v~~Ll~~Gad~n~  205 (228)
T d1k1aa_         160 VQLLLQ------HGANVNAQMYSGSSALHSASG----RGLLPLVRTLVRSGADSSL  205 (228)
T ss_dssp             HHHHHH------TTCCTTCBCTTSCBHHHHHHH----HTCHHHHHHHHHTTCCTTC
T ss_pred             hhhhhh------hccccccccccCcchHHHHHH----cCCHHHHHHHHHCCCCCCC
Confidence            999996      788889999999999999999    8899999999999999874